AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46012

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46012.t1 MTR_7g066340 83.885 453 72 1 1 452 1 453 0.0 767
MS.gene46012.t1 MTR_7g066310 69.369 444 72 3 9 452 4 383 0.0 594
MS.gene46012.t1 MTR_7g066350 65.714 455 141 7 1 449 1 446 0.0 566
MS.gene46012.t1 MTR_1g041315 62.416 447 147 6 7 436 9 451 0.0 530
MS.gene46012.t1 MTR_7g066280 64.806 412 73 2 91 452 1 390 0.0 513
MS.gene46012.t1 MTR_7g066260 59.607 458 170 7 6 452 9 462 1.56e-177 506
MS.gene46012.t1 MTR_7g066400 56.568 472 156 7 1 455 1 440 8.10e-169 482
MS.gene46012.t1 MTR_7g066570 56.263 487 167 9 3 453 5 481 2.15e-167 483
MS.gene46012.t1 MTR_7g012680 54.936 466 171 8 3 453 5 446 3.29e-154 445
MS.gene46012.t1 MTR_7g066360 56.236 457 175 9 6 452 8 449 7.80e-152 440
MS.gene46012.t1 MTR_7g066290 54.846 454 169 8 6 452 9 433 7.09e-148 429
MS.gene46012.t1 MTR_7g058710 48.096 499 200 11 1 456 1 483 9.93e-137 402
MS.gene46012.t1 MTR_7g066580 46.921 471 174 11 18 445 1 438 2.16e-124 369
MS.gene46012.t1 MTR_7g066580 27.344 256 139 8 4 233 207 441 4.37e-13 71.2
MS.gene46012.t1 MTR_2g029400 44.703 472 150 10 6 441 8 404 1.32e-115 345
MS.gene46012.t1 MTR_7g066430 42.041 490 229 13 12 453 4 486 1.72e-114 346
MS.gene46012.t1 MTR_7g066430 28.151 238 144 6 9 231 254 479 3.20e-15 78.2
MS.gene46012.t1 MTR_7g058700 46.771 449 161 10 24 452 531 921 1.04e-111 350
MS.gene46012.t1 MTR_7g066410 39.764 508 238 10 12 454 10 514 1.54e-110 336
MS.gene46012.t1 MTR_7g066480 40.535 449 218 10 11 452 15 421 1.46e-96 297
MS.gene46012.t1 MTR_7g066490 40.225 445 209 9 12 452 16 407 6.49e-95 293
MS.gene46012.t1 MTR_7g062300 37.243 486 250 12 1 448 1 469 1.40e-91 286
MS.gene46012.t1 MTR_7g062280 36.686 507 248 14 5 456 3 491 3.95e-90 283
MS.gene46012.t1 MTR_7g063660 36.714 493 250 14 7 456 4 477 1.79e-89 280
MS.gene46012.t1 MTR_7g063900 39.754 488 242 12 5 450 3 480 2.52e-88 278
MS.gene46012.t1 MTR_7g063820 37.423 489 257 11 5 454 2 480 1.29e-87 276
MS.gene46012.t1 MTR_7g063880 38.365 477 239 14 5 448 4 458 4.04e-86 271
MS.gene46012.t1 MTR_7g063830 37.474 475 249 12 1 457 1 445 4.47e-84 265
MS.gene46012.t1 MTR_7g063890 39.130 483 243 11 11 452 26 498 7.46e-84 267
MS.gene46012.t1 MTR_7g063840 36.511 493 256 16 1 456 1 473 1.00e-82 263
MS.gene46012.t1 MTR_7g063920 35.818 483 236 11 1 456 1 436 4.28e-81 258
MS.gene46012.t1 MTR_4g019310 34.064 502 255 13 6 448 2 486 5.79e-81 259
MS.gene46012.t1 MTR_4g019310 31.760 233 136 11 13 234 267 487 1.32e-15 79.3
MS.gene46012.t1 MTR_3g007740 37.310 461 244 12 11 452 8 442 4.96e-79 252
MS.gene46012.t1 MTR_3g065200 35.269 465 209 15 10 439 1 408 6.30e-74 239
MS.gene46012.t1 MTR_4g017440 32.549 510 268 13 6 453 8 503 1.80e-73 240
MS.gene46012.t1 MTR_4g017830 33.333 519 273 15 1 457 1 508 4.83e-73 239
MS.gene46012.t1 MTR_4g019340 33.264 478 254 11 13 440 39 501 3.29e-72 236
MS.gene46012.t1 MTR_4g019340 29.630 216 135 5 12 226 303 502 2.31e-15 78.6
MS.gene46012.t1 MTR_7g066680 46.154 299 98 5 214 449 37 335 2.49e-70 227
MS.gene46012.t1 MTR_7g066680 29.534 193 122 7 6 193 80 263 3.80e-12 67.8
MS.gene46012.t1 MTR_4g017410 33.535 495 260 17 6 448 3 480 4.75e-69 228
MS.gene46012.t1 MTR_7g063670 35.000 460 259 12 13 454 16 453 5.18e-69 227
MS.gene46012.t1 MTR_4g017610 32.106 489 250 14 15 449 16 476 7.24e-68 224
MS.gene46012.t1 MTR_4g017610 28.992 238 123 9 255 448 6 241 4.10e-13 71.6
MS.gene46012.t1 MTR_4g017610 29.185 233 136 8 5 230 262 472 9.93e-12 67.0
MS.gene46012.t1 MTR_1g014060 55.300 217 87 5 21 233 9 219 1.84e-66 218
MS.gene46012.t1 MTR_1g014060 48.000 175 77 3 292 452 210 384 5.44e-37 140
MS.gene46012.t1 MTR_4g017470 29.941 511 250 11 1 448 1 466 5.54e-59 201
MS.gene46012.t1 MTR_4g017550 29.730 481 244 17 41 453 20 474 1.75e-46 167
MS.gene46012.t1 MTR_4g017550 29.832 238 130 7 12 230 247 466 1.03e-15 79.7
MS.gene46012.t1 MTR_7g066390 56.000 150 38 1 303 452 1 122 1.58e-45 155
MS.gene46012.t1 MTR_7g063720 39.048 210 115 3 256 452 17 226 3.85e-36 134
MS.gene46012.t1 MTR_7g063720 29.487 234 130 8 3 231 17 220 4.36e-18 84.0
MS.gene46012.t1 MTR_7g062270 40.116 172 100 3 13 183 11 180 1.02e-33 130
MS.gene46012.t1 MTR_2g067310 43.353 173 58 4 23 195 58 190 4.21e-29 114
MS.gene46012.t1 MTR_7g100420 33.934 333 169 11 155 453 83 398 5.48e-29 118
MS.gene46012.t1 MTR_7g063850 29.677 310 155 10 185 456 4 288 1.24e-27 112
MS.gene46012.t1 MTR_7g063850 25.652 230 136 9 15 231 69 276 9.73e-13 68.9
MS.gene46012.t1 MTR_1g115440 34.400 250 140 9 1 237 1 239 2.75e-26 107
MS.gene46012.t1 MTR_7g063690 30.466 279 123 7 13 289 13 222 5.68e-26 106
MS.gene46012.t1 MTR_8g445860 31.276 243 149 6 4 237 5 238 7.35e-26 105
MS.gene46012.t1 MTR_8g445860 29.018 224 118 4 260 445 11 231 1.70e-21 93.6
MS.gene46012.t1 MTR_8g023240 25.105 474 283 13 13 444 38 481 4.31e-25 108
MS.gene46012.t1 MTR_0150s0010 31.418 261 132 9 1 237 1 238 7.65e-21 91.7
MS.gene46012.t1 MTR_4g019330 32.240 183 94 7 276 456 32 186 9.55e-17 78.6
MS.gene46012.t1 MTR_1g115455 27.888 251 142 8 6 237 3 233 2.72e-16 78.6
MS.gene46012.t1 MTR_4g019240 36.842 114 60 4 3 108 4 113 2.69e-15 74.3
MS.gene46012.t1 MTR_1g115470 41.905 105 53 3 12 114 6 104 2.39e-14 75.1
MS.gene46012.t1 MTR_1g115450 40.000 90 49 1 7 96 2 86 2.69e-14 70.5
MS.gene46012.t1 MTR_7g063760 47.945 73 34 2 388 456 2 74 5.98e-14 67.0
MS.gene46012.t1 MTR_0150s0030 37.363 91 51 2 6 95 2 87 8.57e-12 64.7
MS.gene46012.t1 MTR_8g044880 37.113 97 55 2 6 101 2 93 2.26e-11 64.7
MS.gene46012.t1 MTR_1g115435 27.004 237 140 9 7 238 2 210 2.32e-11 63.9
MS.gene46012.t1 MTR_8g445910 38.462 91 50 2 6 95 2 87 7.94e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46012.t1 AT3G09140 31.693 508 282 16 1 455 1 496 1.47e-61 208
MS.gene46012.t1 AT5G01120 30.595 487 276 13 13 448 10 485 1.10e-59 204
MS.gene46012.t1 AT3G09140 29.963 534 285 16 1 455 1 524 1.48e-57 198
MS.gene46012.t1 AT5G43240 30.223 493 274 13 13 448 10 489 1.22e-55 193
MS.gene46012.t1 AT5G43240 30.223 493 274 13 13 448 10 489 1.22e-55 193
MS.gene46012.t1 AT5G43240 30.223 493 274 13 13 448 10 489 1.22e-55 193
MS.gene46012.t1 AT5G01150 30.390 487 283 13 12 455 9 482 1.26e-54 190
MS.gene46012.t1 AT5G01140 29.474 475 282 11 12 457 9 459 1.35e-52 184
MS.gene46012.t1 AT5G01130 29.362 470 292 8 1 454 1 446 3.64e-50 177
MS.gene46012.t1 AT3G09110 32.390 318 209 4 12 327 9 322 5.52e-49 171
MS.gene46012.t1 AT3G09120 30.408 319 199 6 11 316 5 313 6.89e-38 140
MS.gene46012.t1 AT5G37320 26.347 501 301 16 3 455 2 482 5.35e-37 142
MS.gene46012.t1 AT5G43240 29.091 330 181 8 163 448 25 345 2.18e-25 107

Find 77 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGCACCATTAACGTTTA+TGG 0.174129 7.2:-43704068 MS.gene46012:CDS
CAATGTTCAGTTTCATATTC+TGG 0.191679 7.2:+43705048 None:intergenic
GATCCTAAATCCCCTATTTC+TGG 0.192592 7.2:-43704100 MS.gene46012:CDS
CCATTTCCTCCACATCATTA+AGG 0.209295 7.2:+43703972 None:intergenic
GTCCGACTTCATATTTAAAA+AGG 0.224512 7.2:-43704527 MS.gene46012:CDS
TGAGTTCAAACAAGTGTTTC+AGG 0.239676 7.2:-43704246 MS.gene46012:CDS
TAAGCACCTGCTGAGTTTCT+TGG 0.241431 7.2:+43705074 None:intergenic
CTAGCATATCCACCAGAAAT+AGG 0.248360 7.2:+43704088 None:intergenic
AAGAAAACATACCTCTTTCT+TGG 0.258951 7.2:+43704725 None:intergenic
CCACCAGAAATAGGGGATTT+AGG 0.261981 7.2:+43704097 None:intergenic
AGATTTGCGAAATTGAAAAT+AGG 0.270663 7.2:-43704983 MS.gene46012:CDS
CAAGGTTACCATTAGAGTTT+TGG 0.279997 7.2:-43705324 MS.gene46012:CDS
TGATCTACTCAAATTGTCTT+TGG 0.290186 7.2:-43704566 MS.gene46012:CDS
AACCAATTGGAGGTTAATAT+TGG 0.305540 7.2:-43704475 MS.gene46012:CDS
CTTGGTAATGTTGATATTAA+CGG 0.315104 7.2:+43704743 None:intergenic
AAACTTGTCGTAACAACATT+TGG 0.329105 7.2:+43704819 None:intergenic
CGATTTCTTTACTCAAAATC+AGG 0.337067 7.2:+43704895 None:intergenic
AGTTTCCTCACTTTCCCCTT+AGG 0.352308 7.2:-43704343 MS.gene46012:CDS
TAGCATATCCACCAGAAATA+GGG 0.365800 7.2:+43704089 None:intergenic
GAGGAAATGGTCATTAATAT+TGG 0.367390 7.2:-43703959 MS.gene46012:CDS
TTTAGTTCTAAGTAACCAAT+TGG 0.384220 7.2:-43704488 MS.gene46012:CDS
GAGTTCAGATTGAGCGGAAA+TGG 0.387194 7.2:+43704189 None:intergenic
GCTTCTTAACATTGCGCTTA+GGG 0.394593 7.2:-43705235 MS.gene46012:CDS
CATTTCCTCCACATCATTAA+GGG 0.397517 7.2:+43703973 None:intergenic
AAAGGAAGAATCTGATGAAA+TGG 0.399313 7.2:-43704446 MS.gene46012:CDS
TTTATATGGTTGCAGGGTCT+CGG 0.399617 7.2:-43703832 MS.gene46012:intron
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.2:-43704798 MS.gene46012:CDS
GATTTGCGAAATTGAAAATA+GGG 0.405308 7.2:-43704982 MS.gene46012:CDS
TCTGTCACCATAAACGTTAA+TGG 0.410819 7.2:+43704061 None:intergenic
AGCTTCTTAACATTGCGCTT+AGG 0.417921 7.2:-43705236 MS.gene46012:CDS
CCTTAATGATGTGGAGGAAA+TGG 0.422441 7.2:-43703972 MS.gene46012:CDS
TACCAATATTAACCTCCAAT+TGG 0.431128 7.2:+43704473 None:intergenic
CTTTGACCAACGGCCTCAAC+CGG 0.435801 7.2:-43703777 MS.gene46012:CDS
CTTGTCCACCAAAACTCTAA+TGG 0.440326 7.2:+43705316 None:intergenic
TATGTATGAAATACCATCAA+TGG 0.443472 7.2:+43704012 None:intergenic
AATATGCAACACTGCTCCTA+AGG 0.452936 7.2:+43704327 None:intergenic
TCTATTTGCTGAGGCAGATA+AGG 0.457603 7.2:-43705279 MS.gene46012:CDS
TTGAGCGGAAATGGTTGGTC+TGG 0.463561 7.2:+43704198 None:intergenic
GGTTAATATTGGTAAAGAAA+AGG 0.492157 7.2:-43704464 MS.gene46012:CDS
ACTCCAATGTCATCCATTGA+TGG 0.495461 7.2:-43704025 MS.gene46012:CDS
AGCTTACAAGAGAGAATCCT+TGG 0.511462 7.2:+43704302 None:intergenic
TATCAACATTACCAAGAAAG+AGG 0.515400 7.2:-43704736 MS.gene46012:intron
AGTTCTAAGTAACCAATTGG+AGG 0.534683 7.2:-43704485 MS.gene46012:CDS
AGTAACCTATGTACCGGTTG+AGG 0.549425 7.2:+43703764 None:intergenic
TCTCACAGAGGTAGTAGGAC+TGG 0.549499 7.2:+43705009 None:intergenic
ATATGCAACACTGCTCCTAA+GGG 0.554427 7.2:+43704328 None:intergenic
TATGTACCGGTTGAGGCCGT+TGG 0.557931 7.2:+43703771 None:intergenic
CATTGACTCCAAGCTTCTGA+AGG 0.561296 7.2:+43704790 None:intergenic
AGCATATCCACCAGAAATAG+GGG 0.564754 7.2:+43704090 None:intergenic
TTCATACATAGAAAGAATGA+AGG 0.565371 7.2:-43703999 MS.gene46012:CDS
ATCAATCCAAGAAACTCAGC+AGG 0.567136 7.2:-43705080 MS.gene46012:CDS
TCAACATCTGCTTTGACCAA+CGG 0.573453 7.2:-43703787 MS.gene46012:CDS
CCTAAATCCCCTATTTCTGG+TGG 0.575624 7.2:-43704097 MS.gene46012:CDS
TCAGATTGAGCGGAAATGGT+TGG 0.577011 7.2:+43704193 None:intergenic
TAGTGAAGTAACCTATGTAC+CGG 0.579660 7.2:+43703758 None:intergenic
AACGGCCTCAACCGGTACAT+AGG 0.580423 7.2:-43703769 MS.gene46012:intron
CTCAGCAAAACAAGTAGACA+AGG 0.581182 7.2:-43705342 MS.gene46012:CDS
CTCGTTCTCACAGAGGTAGT+AGG 0.593294 7.2:+43705004 None:intergenic
ATTTCCTCCACATCATTAAG+GGG 0.596639 7.2:+43703974 None:intergenic
GTTCCTGAGTTCAGATTGAG+CGG 0.597400 7.2:+43704183 None:intergenic
AAATAAAGTTCTATTTGCTG+AGG 0.602370 7.2:-43705288 MS.gene46012:CDS
AGGGACCATTGCAAAACTTG+TGG 0.604088 7.2:-43705216 MS.gene46012:CDS
ATACCATCAATGGATGACAT+TGG 0.606080 7.2:+43704022 None:intergenic
TTTCCGCTCAATCTGAACTC+AGG 0.610861 7.2:-43704186 MS.gene46012:CDS
GTTTATGGTGACAGATGACT+TGG 0.612440 7.2:-43704053 MS.gene46012:CDS
GCAGTGTTGCATATTCTCCA+AGG 0.619271 7.2:-43704319 MS.gene46012:CDS
CGCAAATCTCGTTCTCACAG+AGG 0.626293 7.2:+43704997 None:intergenic
TTAAATATGAAGTCGGACAG+AGG 0.633596 7.2:+43704532 None:intergenic
ACAGAGGTAGTAGGACTGGA+AGG 0.635795 7.2:+43705013 None:intergenic
GGTCATTAATATTGGCCACA+AGG 0.638042 7.2:-43703951 MS.gene46012:CDS
CTGCTCCTAAGGGGAAAGTG+AGG 0.642220 7.2:+43704338 None:intergenic
TATTCCCTATTACCTCCTTG+TGG 0.645442 7.2:+43703936 None:intergenic
GTTGGTCAAAGCAGATGTTG+AGG 0.676855 7.2:+43703789 None:intergenic
TATGCAACACTGCTCCTAAG+GGG 0.682165 7.2:+43704329 None:intergenic
TTTCCTCCACATCATTAAGG+GGG 0.685271 7.2:+43703975 None:intergenic
TCTATGGTCACAGACATGCA+AGG 0.694458 7.2:-43705111 MS.gene46012:CDS
CATTAATATTGGCCACAAGG+AGG 0.705705 7.2:-43703948 MS.gene46012:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATATTTGTTTGTTTATA+TGG - chr7.2:43704962-43704981 MS.gene46012:CDS 15.0%
!! TAAGAGAATTAGTTATAAAT+AGG - chr7.2:43705241-43705260 MS.gene46012:CDS 15.0%
!!! TTTCCTTATAATTGTTTTTT+GGG + chr7.2:43704665-43704684 None:intergenic 15.0%
!!! TTTTAATTACTCAATTTGAA+TGG + chr7.2:43705332-43705351 None:intergenic 15.0%
!!! TTTTCCTTATAATTGTTTTT+TGG + chr7.2:43704666-43704685 None:intergenic 15.0%
!! ATCTTGATGAAAAATATCTA+TGG - chr7.2:43703681-43703700 MS.gene46012:intron 20.0%
!!! TGTATCATGAAGTTTTTTTT+TGG + chr7.2:43705081-43705100 None:intergenic 20.0%
!!! TTCCTTTTTAAATATGAAGT+CGG + chr7.2:43704286-43704305 None:intergenic 20.0%
! AGATTTGCGAAATTGAAAAT+AGG - chr7.2:43703825-43703844 MS.gene46012:intron 25.0%
! AGCAAACTTTACTAATTTAG+TGG + chr7.2:43705301-43705320 None:intergenic 25.0%
! AGCAATCAAAAATGTATTTG+TGG - chr7.2:43703866-43703885 MS.gene46012:intron 25.0%
! GAGAATTAGTTATAAATAGG+AGG - chr7.2:43705244-43705263 MS.gene46012:CDS 25.0%
! GATCCCAAAAAACAATTATA+AGG - chr7.2:43704659-43704678 MS.gene46012:intron 25.0%
! GATTTGCGAAATTGAAAATA+GGG - chr7.2:43703826-43703845 MS.gene46012:intron 25.0%
! GGTTAATATTGGTAAAGAAA+AGG - chr7.2:43704344-43704363 MS.gene46012:CDS 25.0%
! TATGTATGAAATACCATCAA+TGG + chr7.2:43704799-43704818 None:intergenic 25.0%
! TTCATACATAGAAAGAATGA+AGG - chr7.2:43704809-43704828 MS.gene46012:CDS 25.0%
!! AAATAAAGTTCTATTTGCTG+AGG - chr7.2:43703520-43703539 MS.gene46012:intron 25.0%
!! TCAAAATCAGGAATTTTTCT+CGG + chr7.2:43703904-43703923 None:intergenic 25.0%
!!! AGTTTTTAAAGTTTAAACCC+TGG + chr7.2:43705271-43705290 None:intergenic 25.0%
!!! CTGATTTTGAGTAAAGAAAT+CGG - chr7.2:43703914-43703933 MS.gene46012:intron 25.0%
!!! CTTGGTAATGTTGATATTAA+CGG + chr7.2:43704068-43704087 None:intergenic 25.0%
!!! TAAAGAAATCGGTTTTGTTA+AGG - chr7.2:43703925-43703944 MS.gene46012:intron 25.0%
!!! TTTAGTTCTAAGTAACCAAT+TGG - chr7.2:43704320-43704339 MS.gene46012:CDS 25.0%
!!! TTTTTGGGATCAGTAATATT+TGG + chr7.2:43704650-43704669 None:intergenic 25.0%
AAACTTGTCGTAACAACATT+TGG + chr7.2:43703992-43704011 None:intergenic 30.0%
AAAGGAAGAATCTGATGAAA+TGG - chr7.2:43704362-43704381 MS.gene46012:CDS 30.0%
AACCAATTGGAGGTTAATAT+TGG - chr7.2:43704333-43704352 MS.gene46012:CDS 30.0%
AAGAAAACATACCTCTTTCT+TGG + chr7.2:43704086-43704105 None:intergenic 30.0%
CAATGTTCAGTTTCATATTC+TGG + chr7.2:43703763-43703782 None:intergenic 30.0%
CACATATTGAAGAATTAGTG+AGG + chr7.2:43704207-43704226 None:intergenic 30.0%
CGATTTCTTTACTCAAAATC+AGG + chr7.2:43703916-43703935 None:intergenic 30.0%
CTCACTAATTCTTCAATATG+TGG - chr7.2:43704205-43704224 MS.gene46012:CDS 30.0%
CTTCAATATGTGGTTTGAAT+AGG - chr7.2:43704215-43704234 MS.gene46012:CDS 30.0%
GAGGAAATGGTCATTAATAT+TGG - chr7.2:43704849-43704868 MS.gene46012:CDS 30.0%
GTCCGACTTCATATTTAAAA+AGG - chr7.2:43704281-43704300 MS.gene46012:CDS 30.0%
TACCAATATTAACCTCCAAT+TGG + chr7.2:43704338-43704357 None:intergenic 30.0%
TATCAACATTACCAAGAAAG+AGG - chr7.2:43704072-43704091 MS.gene46012:CDS 30.0%
TGATCTACTCAAATTGTCTT+TGG - chr7.2:43704242-43704261 MS.gene46012:CDS 30.0%
TGTTTGTTTATATGGTTGCA+GGG - chr7.2:43704970-43704989 MS.gene46012:CDS 30.0%
TTGTTTGTTTATATGGTTGC+AGG - chr7.2:43704969-43704988 MS.gene46012:CDS 30.0%
!! CATGATACCAAGATTTTGAT+TGG - chr7.2:43705156-43705175 MS.gene46012:CDS 30.0%
!!! AATTTTGAAGCATTGAGCTT+TGG - chr7.2:43703626-43703645 MS.gene46012:intron 30.0%
AGCACAACCAATCAAAATCT+TGG + chr7.2:43705166-43705185 None:intergenic 35.0%
AGTTATAAATAGGAGGTCCA+GGG - chr7.2:43705251-43705270 MS.gene46012:CDS 35.0%
ATACCATCAATGGATGACAT+TGG + chr7.2:43704789-43704808 None:intergenic 35.0%
ATTTCCTCCACATCATTAAG+GGG + chr7.2:43704837-43704856 None:intergenic 35.0%
CATTTCCTCCACATCATTAA+GGG + chr7.2:43704838-43704857 None:intergenic 35.0%
TAGCATATCCACCAGAAATA+GGG + chr7.2:43704722-43704741 None:intergenic 35.0%
TAGTGAAGTAACCTATGTAC+CGG + chr7.2:43705053-43705072 None:intergenic 35.0%
TAGTTATAAATAGGAGGTCC+AGG - chr7.2:43705250-43705269 MS.gene46012:CDS 35.0%
TCTGTCACCATAAACGTTAA+TGG + chr7.2:43704750-43704769 None:intergenic 35.0%
TGAGTTCAAACAAGTGTTTC+AGG - chr7.2:43704562-43704581 MS.gene46012:CDS 35.0%
TTAAATATGAAGTCGGACAG+AGG + chr7.2:43704279-43704298 None:intergenic 35.0%
TTAAATCTCCTTCAGAAGCT+TGG - chr7.2:43704010-43704029 MS.gene46012:CDS 35.0%
! ATTAGCCACAAGTTTTGCAA+TGG + chr7.2:43703600-43703619 None:intergenic 35.0%
! CAAGGTTACCATTAGAGTTT+TGG - chr7.2:43703484-43703503 MS.gene46012:intron 35.0%
! TAGAGCACCATTAACGTTTA+TGG - chr7.2:43704740-43704759 MS.gene46012:CDS 35.0%
!! AGTTCTAAGTAACCAATTGG+AGG - chr7.2:43704323-43704342 MS.gene46012:CDS 35.0%
AATATGCAACACTGCTCCTA+AGG + chr7.2:43704484-43704503 None:intergenic 40.0%
ACTCCAATGTCATCCATTGA+TGG - chr7.2:43704783-43704802 MS.gene46012:CDS 40.0%
AGCATATCCACCAGAAATAG+GGG + chr7.2:43704721-43704740 None:intergenic 40.0%
AGCTTACAAGAGAGAATCCT+TGG + chr7.2:43704509-43704528 None:intergenic 40.0%
AGCTTCTTAACATTGCGCTT+AGG - chr7.2:43703572-43703591 MS.gene46012:intron 40.0%
ATATGCAACACTGCTCCTAA+GGG + chr7.2:43704483-43704502 None:intergenic 40.0%
ATCAATCCAAGAAACTCAGC+AGG - chr7.2:43703728-43703747 MS.gene46012:intron 40.0%
CATTAACCTGACTACGTACT+TGG + chr7.2:43705218-43705237 None:intergenic 40.0%
CATTAATATTGGCCACAAGG+AGG - chr7.2:43704860-43704879 MS.gene46012:CDS 40.0%
CCATTTCCTCCACATCATTA+AGG + chr7.2:43704839-43704858 None:intergenic 40.0%
CCTTAATGATGTGGAGGAAA+TGG - chr7.2:43704836-43704855 MS.gene46012:CDS 40.0%
CTAGCATATCCACCAGAAAT+AGG + chr7.2:43704723-43704742 None:intergenic 40.0%
CTCAGCAAAACAAGTAGACA+AGG - chr7.2:43703466-43703485 MS.gene46012:intron 40.0%
CTTGTCCACCAAAACTCTAA+TGG + chr7.2:43703495-43703514 None:intergenic 40.0%
GATCCTAAATCCCCTATTTC+TGG - chr7.2:43704708-43704727 MS.gene46012:intron 40.0%
GCTTCTTAACATTGCGCTTA+GGG - chr7.2:43703573-43703592 MS.gene46012:intron 40.0%
GGTCATTAATATTGGCCACA+AGG - chr7.2:43704857-43704876 MS.gene46012:CDS 40.0%
GTTTATGGTGACAGATGACT+TGG - chr7.2:43704755-43704774 MS.gene46012:CDS 40.0%
TATTCCCTATTACCTCCTTG+TGG + chr7.2:43704875-43704894 None:intergenic 40.0%
TCAACATCTGCTTTGACCAA+CGG - chr7.2:43705021-43705040 MS.gene46012:CDS 40.0%
TTTATATGGTTGCAGGGTCT+CGG - chr7.2:43704976-43704995 MS.gene46012:CDS 40.0%
TTTCCTCCACATCATTAAGG+GGG + chr7.2:43704836-43704855 None:intergenic 40.0%
! TCTATTTGCTGAGGCAGATA+AGG - chr7.2:43703529-43703548 MS.gene46012:intron 40.0%
! TTTTCTCCAAGTACGTAGTC+AGG - chr7.2:43705209-43705228 MS.gene46012:CDS 40.0%
!! GGTTACCATTAGAGTTTTGG+TGG - chr7.2:43703487-43703506 MS.gene46012:intron 40.0%
!!! CTTGTCTACTTGTTTTGCTG+AGG + chr7.2:43703468-43703487 None:intergenic 40.0%
AGGGACCATTGCAAAACTTG+TGG - chr7.2:43703592-43703611 MS.gene46012:intron 45.0%
AGTTTCCTCACTTTCCCCTT+AGG - chr7.2:43704465-43704484 MS.gene46012:CDS 45.0%
ATTGGCCACAAGGAGGTAAT+AGG - chr7.2:43704867-43704886 MS.gene46012:CDS 45.0%
CCACCAGAAATAGGGGATTT+AGG + chr7.2:43704714-43704733 None:intergenic 45.0%
GAGTTCAGATTGAGCGGAAA+TGG + chr7.2:43704622-43704641 None:intergenic 45.0%
GCAGTGTTGCATATTCTCCA+AGG - chr7.2:43704489-43704508 MS.gene46012:CDS 45.0%
GTTCCTGAGTTCAGATTGAG+CGG + chr7.2:43704628-43704647 None:intergenic 45.0%
GTTGGTCAAAGCAGATGTTG+AGG + chr7.2:43705022-43705041 None:intergenic 45.0%
TAAGCACCTGCTGAGTTTCT+TGG + chr7.2:43703737-43703756 None:intergenic 45.0%
TATGCAACACTGCTCCTAAG+GGG + chr7.2:43704482-43704501 None:intergenic 45.0%
TCAGATTGAGCGGAAATGGT+TGG + chr7.2:43704618-43704637 None:intergenic 45.0%
TCTATGGTCACAGACATGCA+AGG - chr7.2:43703697-43703716 MS.gene46012:intron 45.0%
TTGGCCACAAGGAGGTAATA+GGG - chr7.2:43704868-43704887 MS.gene46012:CDS 45.0%
TTTCCGCTCAATCTGAACTC+AGG - chr7.2:43704622-43704641 MS.gene46012:intron 45.0%
!! AGTAACCTATGTACCGGTTG+AGG + chr7.2:43705047-43705066 None:intergenic 45.0%
!! CATTGACTCCAAGCTTCTGA+AGG + chr7.2:43704021-43704040 None:intergenic 45.0%
!! CCTAAATCCCCTATTTCTGG+TGG - chr7.2:43704711-43704730 MS.gene46012:intron 45.0%
ACAGAGGTAGTAGGACTGGA+AGG + chr7.2:43703798-43703817 None:intergenic 50.0%
CGCAAATCTCGTTCTCACAG+AGG + chr7.2:43703814-43703833 None:intergenic 50.0%
CTCGTTCTCACAGAGGTAGT+AGG + chr7.2:43703807-43703826 None:intergenic 50.0%
GAAGGTCCCCCTTAATGATG+TGG - chr7.2:43704827-43704846 MS.gene46012:CDS 50.0%
TCTCACAGAGGTAGTAGGAC+TGG + chr7.2:43703802-43703821 None:intergenic 50.0%
! TTGAGCGGAAATGGTTGGTC+TGG + chr7.2:43704613-43704632 None:intergenic 50.0%
AACGGCCTCAACCGGTACAT+AGG - chr7.2:43705039-43705058 MS.gene46012:CDS 55.0%
CTGCTCCTAAGGGGAAAGTG+AGG + chr7.2:43704473-43704492 None:intergenic 55.0%
CTTTGACCAACGGCCTCAAC+CGG - chr7.2:43705031-43705050 MS.gene46012:CDS 55.0%
GGTCCCCCTTAATGATGTGG+AGG - chr7.2:43704830-43704849 MS.gene46012:CDS 55.0%
!! TATGTACCGGTTGAGGCCGT+TGG + chr7.2:43705040-43705059 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 43703452 43705378 43703452 ID=MS.gene46012
chr7.2 mRNA 43703452 43705378 43703452 ID=MS.gene46012.t1;Parent=MS.gene46012
chr7.2 exon 43704737 43705378 43704737 ID=MS.gene46012.t1.exon1;Parent=MS.gene46012.t1
chr7.2 CDS 43704737 43705378 43704737 ID=cds.MS.gene46012.t1;Parent=MS.gene46012.t1
chr7.2 exon 43703949 43704593 43703949 ID=MS.gene46012.t1.exon2;Parent=MS.gene46012.t1
chr7.2 CDS 43703949 43704593 43703949 ID=cds.MS.gene46012.t1;Parent=MS.gene46012.t1
chr7.2 exon 43703770 43703839 43703770 ID=MS.gene46012.t1.exon3;Parent=MS.gene46012.t1
chr7.2 CDS 43703770 43703839 43703770 ID=cds.MS.gene46012.t1;Parent=MS.gene46012.t1
chr7.2 exon 43703452 43703468 43703452 ID=MS.gene46012.t1.exon4;Parent=MS.gene46012.t1
chr7.2 CDS 43703452 43703468 43703452 ID=cds.MS.gene46012.t1;Parent=MS.gene46012.t1
Gene Sequence

>MS.gene46012

ATGGCTGAAAATACCTCAGCAAAACAAGTAGACAAGGTTACCATTAGAGTTTTGGTGGACAAGAAGAAAAATAAAGTTCTATTTGCTGAGGCAGATAAGGATTTTGTTGATGTTCTTTTGAGCTTCTTAACATTGCGCTTAGGGACCATTGCAAAACTTGTGGCTAATGACTCAAATTTTGAAGCATTGAGCTTTGGCAGTATTAGTTCACTGTATCAAAGTGTGTCAGATCTTGATGAAAAATATCTATGGTCACAGACATGCAAGGAAATGCTTATCAATCCAAGAAACTCAGCAGGTGCTTATTGCCAGAATATGAAACTGAACATTGACAATACTGATACCTTCCAGTCCTACTACCTCTGTGAGAACGAGATTTGCGAAATTGAAAATAGGGACTGTTTAAGTTACTACAGCAATCAAAAATGTATTTGTGGAAAGCTGTTGAACCGAGAAAAATTCCTGATTTTGAGTAAAGAAATCGGTTTTGTTAAGGAAATGTCAACGTTTATCATATCTGATGATCTTTATGTTATGCCAAATGTTGTTACGACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATGACAGTGCTGCTATTGATAAACTAACCGTTAATATCAACATTACCAAGAAAGAGGTATGTTTTCTTATTCTGTGTTTGTATGACATATTTTTTGTTCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTATTGTTTTTTTGCCTCACTAATTCTTCAATATGTGGTTTGAATAGGTAGTTGATCTACTCAAATTGTCTTTGGTCTCAAAAACTCCTCTGTCCGACTTCATATTTAAAAAGGAACAATTTGTTGAAAATTTAGTTCTAAGTAACCAATTGGAGGTTAATATTGGTAAAGAAAAGGAAGAATCTGATGAAATGGTTGTGAAAGTACTGAGAAGAAAATCAAATGAACAGATTTTGTTTGTTGAAGCAGATGATGATTTTGCTGATTTCGTTTATAGTTTCCTCACTTTCCCCTTAGGAGCAGTGTTGCATATTCTCCAAGGATTCTCTCTTGTAAGCTGCATTGATAATTTGTATAAGAGCATGACTGAATTGAGTTCAAACAAGTGTTTCAGGTCACAGCTTTTCAAAGACGTGCTAACCAGACCAACCATTTCCGCTCAATCTGAACTCAGGAACCAAATATTACTGATCCCAAAAAACAATTATAAGGAAAAAAATACGTCATATAAATTTGTTGATCCTAAATCCCCTATTTCTGGTGGATATGCTAGAGCACCATTAACGTTTATGGTGACAGATGACTTGGTTGTCACTCCAATGTCATCCATTGATGGTATTTCATACATAGAAAGAATGAAGGTCCCCCTTAATGATGTGGAGGAAATGGTCATTAATATTGGCCACAAGGAGGTAATAGGGAATATGTTCATCTTCATATCACACAGTCTTTCATTTTAATATTTCTTGTATCATCATATTTGTAACAACTAACAATATTTGTTTGTTTATATGGTTGCAGGGTCTCGGCATACTTAAAGCTTCACTGACCTCAACATCTGCTTTGACCAACGGCCTCAACCGGTACATAGGTTACTTCACTATTCAACCAAAAAAAAACTTCATGATACATTATCATTTGTAATTATCATAAAAACGATACTAAAGCTCATATAGAAATTGTTTTCATGATACCAAGATTTTGATTGGTTGTGCTTGTATACACTTCACATCAAATACTTTTCTCCAAGTACGTAGTCAGGTTAATGAGTTAAGAGAATTAGTTATAAATAGGAGGTCCAGGGTTTAAACTTTAAAAACTAACATAACCACTAAATTAGTAAAGTTTGCTTACAAAAACCATTCAAATTGAGTAATTAAAAATGAGCATAGAAAAAGAAGAGAATTAA
Protein sequence

>MS.gene46012.t1

MAENTSAKQVDKVTIRVLVDKKKNKVLFAEADKDFVDVLLSFLTLRLGTIAKLVANDSNFEALSFGSISSLYQSVSDLDEKYLWSQTCKEMLINPRNSAGAYCQNMKLNIDNTDTFQSYYLCENEICEIENRDCLSYYSNQKCICGKLLNREKFLILSKEIGFVKEMSTFIISDDLYVMPNVVTTSLNLLQKLGVNDSAAIDKLTVNINITKKEVVDLLKLSLVSKTPLSDFIFKKEQFVENLVLSNQLEVNIGKEKEESDEMVVKVLRRKSNEQILFVEADDDFADFVYSFLTFPLGAVLHILQGFSLVSCIDNLYKSMTELSSNKCFRSQLFKDVLTRPTISAQSELRNQILLIPKNNYKEKNTSYKFVDPKSPISGGYARAPLTFMVTDDLVVTPMSSIDGISYIERMKVPLNDVEEMVINIGHKEGLGILKASLTSTSALTNGLNRYIEKEEN