AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46088.t1 MTR_7g063880 75.926 486 99 7 2 486 3 471 0.0 702
MS.gene46088.t1 MTR_7g063840 56.289 485 198 11 1 483 1 473 1.45e-164 474
MS.gene46088.t1 MTR_7g062280 54.108 499 205 9 1 483 1 491 2.39e-164 474
MS.gene46088.t1 MTR_7g062300 54.918 488 192 14 1 476 1 472 8.10e-162 466
MS.gene46088.t1 MTR_7g063900 52.716 497 212 12 1 483 1 488 4.33e-156 452
MS.gene46088.t1 MTR_7g063660 51.440 486 217 10 5 483 4 477 3.25e-152 442
MS.gene46088.t1 MTR_7g063660 28.270 237 137 9 252 471 3 223 2.58e-13 72.4
MS.gene46088.t1 MTR_7g063830 52.254 488 184 13 1 483 1 444 8.63e-148 430
MS.gene46088.t1 MTR_7g063920 51.329 489 176 9 2 483 3 436 1.72e-147 429
MS.gene46088.t1 MTR_7g063820 51.889 503 203 13 1 483 1 484 1.11e-145 426
MS.gene46088.t1 MTR_3g007740 51.653 484 184 13 3 478 2 443 1.11e-138 407
MS.gene46088.t1 MTR_7g063890 51.717 495 217 10 2 483 19 504 3.37e-136 402
MS.gene46088.t1 MTR_7g063670 49.385 488 192 11 8 483 13 457 2.14e-130 386
MS.gene46088.t1 MTR_7g066570 41.837 490 260 10 4 481 8 484 2.44e-108 333
MS.gene46088.t1 MTR_3g065200 45.119 461 190 15 11 464 4 408 4.74e-102 313
MS.gene46088.t1 MTR_7g066260 39.876 484 253 11 1 475 6 460 5.41e-100 309
MS.gene46088.t1 MTR_7g066410 36.750 517 286 10 1 479 1 514 2.57e-93 293
MS.gene46088.t1 MTR_7g058710 38.755 498 271 14 2 483 4 483 4.60e-93 291
MS.gene46088.t1 MTR_7g063850 54.808 312 111 8 180 484 1 289 1.15e-91 281
MS.gene46088.t1 MTR_7g012680 40.443 497 233 15 2 483 3 451 1.46e-91 286
MS.gene46088.t1 MTR_7g066430 38.057 494 277 12 11 483 5 490 1.43e-89 283
MS.gene46088.t1 MTR_7g066350 38.618 492 245 13 3 479 2 451 3.54e-87 275
MS.gene46088.t1 MTR_7g066340 36.885 488 256 12 3 477 5 453 7.22e-85 270
MS.gene46088.t1 MTR_7g066360 40.947 486 230 13 2 473 3 445 8.73e-85 270
MS.gene46088.t1 MTR_7g066480 38.462 481 208 12 11 478 17 422 2.50e-82 261
MS.gene46088.t1 MTR_7g066580 36.157 484 254 14 16 480 1 448 1.35e-79 255
MS.gene46088.t1 MTR_1g041315 36.421 475 240 13 11 461 15 451 1.73e-78 253
MS.gene46088.t1 MTR_7g066290 38.604 487 227 16 1 473 1 429 1.25e-75 244
MS.gene46088.t1 MTR_7g066400 36.926 501 232 18 1 479 1 439 1.68e-75 244
MS.gene46088.t1 MTR_4g019310 33.915 516 287 18 4 484 2 498 1.98e-74 243
MS.gene46088.t1 MTR_7g066490 36.232 483 214 12 11 484 17 414 2.48e-74 240
MS.gene46088.t1 MTR_7g058700 34.161 483 211 9 22 483 531 927 1.25e-70 242
MS.gene46088.t1 MTR_2g029400 34.711 484 200 12 9 467 13 405 7.70e-68 223
MS.gene46088.t1 MTR_7g063720 48.996 249 105 7 237 482 2 231 9.69e-67 214
MS.gene46088.t1 MTR_7g063720 29.032 217 132 8 12 227 25 220 1.77e-14 73.6
MS.gene46088.t1 MTR_7g066310 33.054 478 215 15 5 475 2 381 3.84e-66 219
MS.gene46088.t1 MTR_4g017410 33.268 514 285 19 3 483 2 490 5.24e-64 216
MS.gene46088.t1 MTR_4g017440 31.641 512 293 17 11 483 15 508 1.03e-58 202
MS.gene46088.t1 MTR_4g017830 32.068 527 291 23 3 483 2 507 1.83e-58 202
MS.gene46088.t1 MTR_7g062270 51.892 185 86 3 3 185 2 185 1.85e-56 192
MS.gene46088.t1 MTR_4g017470 30.095 525 273 17 3 483 2 476 6.57e-54 189
MS.gene46088.t1 MTR_7g063690 44.056 286 91 8 1 283 1 220 2.97e-53 180
MS.gene46088.t1 MTR_4g019340 31.275 502 279 20 1 465 29 501 7.30e-52 183
MS.gene46088.t1 MTR_4g017610 29.249 506 294 20 1 473 1 475 8.67e-48 172
MS.gene46088.t1 MTR_1g014060 48.293 205 102 3 23 225 13 215 1.97e-47 169
MS.gene46088.t1 MTR_1g014060 34.653 202 113 6 284 483 206 390 2.69e-23 102
MS.gene46088.t1 MTR_7g100420 38.801 317 173 8 161 473 94 393 3.54e-47 168
MS.gene46088.t1 MTR_7g100420 65.385 52 18 0 2 53 31 82 8.93e-14 73.6
MS.gene46088.t1 MTR_4g017550 28.838 482 268 21 37 473 18 469 1.38e-37 144
MS.gene46088.t1 MTR_4g017550 30.508 236 123 7 13 226 250 466 3.60e-14 75.1
MS.gene46088.t1 MTR_7g066280 29.762 420 234 14 89 477 1 390 6.97e-37 140
MS.gene46088.t1 MTR_7g066280 28.455 246 145 7 6 227 146 384 5.49e-14 73.9
MS.gene46088.t1 MTR_7g066680 31.975 319 151 8 205 473 32 334 1.31e-36 138
MS.gene46088.t1 MTR_7g066680 28.111 217 134 9 7 212 81 286 5.36e-11 64.3
MS.gene46088.t1 MTR_8g023240 25.259 483 310 17 7 471 34 483 2.00e-31 127
MS.gene46088.t1 MTR_7g063760 58.904 73 29 1 412 483 1 73 1.82e-22 91.3
MS.gene46088.t1 MTR_8g445860 31.330 233 144 6 7 230 10 235 3.59e-22 95.5
MS.gene46088.t1 MTR_8g445860 25.439 228 154 7 254 470 9 231 9.99e-15 74.3
MS.gene46088.t1 MTR_1g115440 32.941 255 133 8 1 233 1 239 4.04e-22 95.5
MS.gene46088.t1 MTR_0150s0010 32.520 246 139 9 1 230 1 235 7.65e-20 89.0
MS.gene46088.t1 MTR_7g063870 62.857 70 24 1 156 223 96 165 8.13e-20 89.4
MS.gene46088.t1 MTR_7g063870 58.929 56 23 0 4 59 25 80 9.49e-15 74.7
MS.gene46088.t1 MTR_2g067310 36.364 187 75 5 11 193 44 190 1.17e-17 82.8
MS.gene46088.t1 MTR_1g115455 29.536 237 150 7 3 230 2 230 1.90e-16 79.0
MS.gene46088.t1 MTR_7g066390 57.353 68 29 0 406 473 51 118 1.03e-15 75.1
MS.gene46088.t1 MTR_8g445920 44.872 78 38 1 1 78 1 73 4.40e-12 63.2
MS.gene46088.t1 MTR_8g044890 44.872 78 38 1 1 78 1 73 4.40e-12 63.2
MS.gene46088.t1 MTR_4g019240 36.364 121 64 4 1 110 1 119 1.35e-11 63.9
MS.gene46088.t1 MTR_1g115450 38.095 105 59 2 7 110 4 103 2.93e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46088.t1 AT5G01120 31.493 489 296 16 11 473 10 485 1.20e-53 188
MS.gene46088.t1 AT3G09140 31.154 520 292 18 1 479 1 495 4.04e-53 187
MS.gene46088.t1 AT5G01150 28.963 511 307 16 3 483 2 486 2.90e-51 182
MS.gene46088.t1 AT5G01130 29.939 491 292 14 3 483 2 450 3.09e-49 175
MS.gene46088.t1 AT3G09140 29.114 553 288 19 1 479 1 523 1.21e-48 175
MS.gene46088.t1 AT3G09110 33.929 336 208 8 12 343 11 336 2.02e-48 170
MS.gene46088.t1 AT5G01140 28.457 499 296 17 3 483 2 457 4.59e-44 162
MS.gene46088.t1 AT5G43240 28.994 507 305 14 3 473 2 489 4.46e-43 160
MS.gene46088.t1 AT5G43240 28.994 507 305 14 3 473 2 489 4.46e-43 160
MS.gene46088.t1 AT5G43240 28.994 507 305 14 3 473 2 489 4.46e-43 160
MS.gene46088.t1 AT3G09120 37.209 301 162 10 9 293 5 294 4.02e-40 147
MS.gene46088.t1 AT5G37320 27.181 493 314 12 11 479 10 481 4.99e-37 142

Find 93 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCCTTGTTTCTCCTTT+GGG 0.184056 7.2:-41762182 MS.gene46088:CDS
AACGGTTGAGTAAATGTAAA+AGG 0.208138 7.2:+41761757 None:intergenic
TTGGCAGTTATATTTGTTAA+AGG 0.215984 7.2:+41762736 None:intergenic
AATGAACGTTTATATTATTT+AGG 0.224596 7.2:-41761900 MS.gene46088:CDS
AAGCTTCCTTGTTTCTCCTT+TGG 0.253692 7.2:-41762183 MS.gene46088:CDS
GGATCTACTAAAATGTTCTT+TGG 0.259006 7.2:-41762405 MS.gene46088:CDS
GCATAATAGTATAGCTGATT+TGG 0.270242 7.2:-41762108 MS.gene46088:CDS
GGGTGCAACCTTTATTATTA+AGG 0.273534 7.2:-41762648 MS.gene46088:CDS
TAATAAGCTTCACAGTGATT+TGG 0.312794 7.2:+41762270 None:intergenic
CAAGATTGTTGTTCCTCAAT+TGG 0.336708 7.2:-41762048 MS.gene46088:CDS
CAAATCATCCTTAATAATAA+AGG 0.353874 7.2:+41762640 None:intergenic
GAAGAATCTTGGCCCCTCTA+TGG 0.366680 7.2:+41762325 None:intergenic
AGGAGTGACCTTGAAACTTC+TGG 0.373371 7.2:-41763110 MS.gene46088:CDS
TCCGTGACCACGTAAATTCT+TGG 0.379065 7.2:+41761813 None:intergenic
AGCTTCTTGACATTACCTTT+AGG 0.386454 7.2:-41763022 MS.gene46088:CDS
AGATCTCGATGAAGGGTGTC+TGG 0.390538 7.2:-41762915 MS.gene46088:CDS
TAAATAATATAAACGTTCAT+TGG 0.396430 7.2:+41761902 None:intergenic
TCTGCAATGGATTTGTGAAC+AGG 0.410837 7.2:-41762670 MS.gene46088:CDS
AAGGAGAAGGTTGTCACTAT+TGG 0.416068 7.2:-41761711 MS.gene46088:CDS
CCTCGAAAATACAATATAGA+AGG 0.420997 7.2:-41761951 MS.gene46088:CDS
GAAGCTTATTATAAGAAAAT+CGG 0.427086 7.2:-41762258 MS.gene46088:CDS
AGTAAATGTAAAAGGGTGAT+TGG 0.429390 7.2:+41761765 None:intergenic
CTGAATACATGAATCGTTTG+AGG 0.429843 7.2:-41762763 MS.gene46088:CDS
TTCAGCAAACAAGACTTTGT+TGG 0.441472 7.2:+41763075 None:intergenic
TTTGTTCACCAGAAGTTTCA+AGG 0.445561 7.2:+41763102 None:intergenic
CATTGTCAGTTAGAAGATAT+CGG 0.454234 7.2:-41761995 MS.gene46088:CDS
TCAAAGGATTCCCGCACTCT+TGG 0.461553 7.2:+41762717 None:intergenic
TTAATAGGAGGGAGTTCATT+GGG 0.461635 7.2:-41762146 MS.gene46088:CDS
TGCTTAAATCAAAATATTGA+CGG 0.463168 7.2:+41762024 None:intergenic
GGGCCAAGATTCTTCTCTTG+TGG 0.466673 7.2:-41762317 MS.gene46088:CDS
TCACTTGCTAACTGAAGTTA+AGG 0.467816 7.2:-41761489 MS.gene46088:CDS
GCAGTGTCTCAGCATATTGA+AGG 0.471906 7.2:-41761552 MS.gene46088:intron
TTTAATAGGAGGGAGTTCAT+TGG 0.477160 7.2:-41762147 MS.gene46088:CDS
AAACCACAAGAGAAGAATCT+TGG 0.480544 7.2:+41762314 None:intergenic
AAATACAATATAGAAGGTAT+TGG 0.488924 7.2:-41761945 MS.gene46088:CDS
GCTTCCTTGTTTCTCCTTTG+GGG 0.491865 7.2:-41762181 MS.gene46088:CDS
TAATCTTCTGATGAATTAGC+TGG 0.495568 7.2:+41762860 None:intergenic
AAATATTGACGGGCCAATTG+AGG 0.505994 7.2:+41762035 None:intergenic
ATCTGCTCTATCAAACGGTC+TGG 0.511483 7.2:-41761513 MS.gene46088:CDS
CTTCCTTGTTTCTCCTTTGG+GGG 0.513430 7.2:-41762180 MS.gene46088:CDS
AACAAATTATTGTATGTGCA+AGG 0.513664 7.2:-41762233 MS.gene46088:CDS
TTCCTTGTTTCTCCTTTGGG+GGG 0.515635 7.2:-41762179 MS.gene46088:CDS
GCTTAAATCAAAATATTGAC+GGG 0.518961 7.2:+41762025 None:intergenic
CAAATTATTGTATGTGCAAG+GGG 0.524177 7.2:-41762231 MS.gene46088:CDS
AGACAGAAAACCATCCATAG+AGG 0.527169 7.2:-41762339 MS.gene46088:CDS
ACGGTTGAGTAAATGTAAAA+GGG 0.528785 7.2:+41761758 None:intergenic
GACAGAAAACCATCCATAGA+GGG 0.528903 7.2:-41762338 MS.gene46088:CDS
ATCATAACTGAACGGTTCAA+AGG 0.529393 7.2:+41762701 None:intergenic
GGTCACTGTCACTAAAGAAA+AGG 0.532767 7.2:-41762528 MS.gene46088:intron
AGAAAAGTTCGTAATATCCA+TGG 0.533127 7.2:+41762601 None:intergenic
GGCTACGAACGTTATGTCAT+GGG 0.534463 7.2:-41761837 MS.gene46088:CDS
GGAATTGTACGTTTAATAGG+AGG 0.539040 7.2:-41762158 MS.gene46088:CDS
AACTTCTGTTGACGATCTGA+AGG 0.539244 7.2:-41761730 MS.gene46088:CDS
TATCAATCACCTTCACTGAC+TGG 0.539489 7.2:-41761858 MS.gene46088:CDS
AATATAACTGCCAAGAGTGC+GGG 0.540835 7.2:-41762727 MS.gene46088:CDS
TCCACATCTGCTCTATCAAA+CGG 0.541972 7.2:-41761518 MS.gene46088:CDS
TGGCTACGAACGTTATGTCA+TGG 0.546147 7.2:-41761838 MS.gene46088:CDS
GACTGTCATGCAAAACTCCA+TGG 0.546370 7.2:-41762618 MS.gene46088:CDS
ACAAATTATTGTATGTGCAA+GGG 0.546473 7.2:-41762232 MS.gene46088:CDS
GGTGTCTGGGAACATTGATA+AGG 0.551603 7.2:-41762901 MS.gene46088:CDS
TGTTGACGATCTGAAGGAGA+AGG 0.554611 7.2:-41761724 MS.gene46088:CDS
AATCTTGGCCCCTCTATGGA+TGG 0.554927 7.2:+41762329 None:intergenic
GATCTCGATGAAGGGTGTCT+GGG 0.555440 7.2:-41762914 MS.gene46088:CDS
AGCATGGGGTCAGTCACACT+TGG 0.556147 7.2:-41762968 MS.gene46088:CDS
AGTCTTGCAATAGTACCTAA+AGG 0.556779 7.2:+41763007 None:intergenic
TTACGTGGTCACGGATGACC+TGG 0.562305 7.2:-41761805 MS.gene46088:CDS
CGTCAACAGAAGTTTCAAAA+CGG 0.562417 7.2:+41761739 None:intergenic
ACCGTTTGATAGAGCAGATG+TGG 0.565474 7.2:+41761517 None:intergenic
GTAGAGAAAGAGTCAAGCAT+GGG 0.573086 7.2:-41762983 MS.gene46088:CDS
CGATTCATGTATTCAGAGCA+AGG 0.583592 7.2:+41762770 None:intergenic
ACCAAGAATTTACGTGGTCA+CGG 0.595998 7.2:-41761814 MS.gene46088:CDS
AAATATAACTGCCAAGAGTG+CGG 0.597419 7.2:-41762728 MS.gene46088:CDS
CTTGCTAACTGAAGTTAAGG+AGG 0.601679 7.2:-41761486 MS.gene46088:CDS
CGTTCGTAGCCAGTCAGTGA+AGG 0.609055 7.2:+41761849 None:intergenic
AAAAGGGTGATTGGAGACAA+AGG 0.609586 7.2:+41761774 None:intergenic
CTGCAATGGATTTGTGAACA+GGG 0.611920 7.2:-41762669 MS.gene46088:CDS
GAGACAAAGGTGAAATGACC+AGG 0.612367 7.2:+41761787 None:intergenic
TGTGTGGAAGATCTCGATGA+AGG 0.612532 7.2:-41762923 MS.gene46088:CDS
GAATTGTACGTTTAATAGGA+GGG 0.615334 7.2:-41762157 MS.gene46088:CDS
GTGCATAAGAAGTACTCTGT+GGG 0.616518 7.2:+41762800 None:intergenic
GCTGCTACTCAATCACAAGA+AGG 0.631955 7.2:-41763130 MS.gene46088:CDS
TGTAGAGAAAGAGTCAAGCA+TGG 0.634257 7.2:-41762984 MS.gene46088:CDS
TCTGGGAACATTGATAAGGA+AGG 0.638942 7.2:-41762897 MS.gene46088:CDS
GAACTCACTCTATCATTGTG+TGG 0.641230 7.2:-41762939 MS.gene46088:CDS
AAGTTCTGTGAAGGAAATGA+CGG 0.642421 7.2:-41762549 MS.gene46088:CDS
CATGGGACCAAGAATTTACG+TGG 0.651837 7.2:-41761820 MS.gene46088:CDS
GTGTGGAAGATCTCGATGAA+GGG 0.663845 7.2:-41762922 MS.gene46088:CDS
GTATTCAGAGCAAGGAAACG+TGG 0.675034 7.2:+41762778 None:intergenic
TGTCACTATTGGCATCAAAG+AGG 0.683718 7.2:-41761700 MS.gene46088:intron
TGCAATGGATTTGTGAACAG+GGG 0.689944 7.2:-41762668 MS.gene46088:CDS
ACAGAAAACCATCCATAGAG+GGG 0.692645 7.2:-41762337 MS.gene46088:CDS
GGTGCATAAGAAGTACTCTG+TGG 0.705012 7.2:+41762799 None:intergenic
TAGAGAAAGAGTCAAGCATG+GGG 0.740615 7.2:-41762982 MS.gene46088:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAACGTTTATATTATTT+AGG - chr7.2:41762708-41762727 MS.gene46088:CDS 15.0%
!! TAAATAATATAAACGTTCAT+TGG + chr7.2:41762709-41762728 None:intergenic 15.0%
!!! TAATTTTGAATGTTTTGTTT+CGG - chr7.2:41762524-41762543 MS.gene46088:intron 15.0%
!! CAAATCATCCTTAATAATAA+AGG + chr7.2:41761971-41761990 None:intergenic 20.0%
!! GAAGCTTATTATAAGAAAAT+CGG - chr7.2:41762350-41762369 MS.gene46088:CDS 20.0%
!! TGCTTAAATCAAAATATTGA+CGG + chr7.2:41762587-41762606 None:intergenic 20.0%
!!! AAATACAATATAGAAGGTAT+TGG - chr7.2:41762663-41762682 MS.gene46088:CDS 20.0%
!!! ATTTTTTCATCATAACTGAA+CGG + chr7.2:41761918-41761937 None:intergenic 20.0%
!!! TATTTCAATTTCTTGTTTTC+TGG - chr7.2:41762108-41762127 MS.gene46088:CDS 20.0%
!!! TCAATATTTTGATTTAAGCA+AGG - chr7.2:41762587-41762606 MS.gene46088:CDS 20.0%
!!! TTAAATGACTTGTATTTTAC+AGG - chr7.2:41762176-41762195 MS.gene46088:CDS 20.0%
! AACAAATTATTGTATGTGCA+AGG - chr7.2:41762375-41762394 MS.gene46088:CDS 25.0%
! ACAAATTATTGTATGTGCAA+GGG - chr7.2:41762376-41762395 MS.gene46088:CDS 25.0%
! ATGATGAAAAAATTCTGCAA+TGG - chr7.2:41761925-41761944 MS.gene46088:CDS 25.0%
! ATGTTTGGTTGTTTAGTAAT+AGG - chr7.2:41762135-41762154 MS.gene46088:CDS 25.0%
! GCTTAAATCAAAATATTGAC+GGG + chr7.2:41762586-41762605 None:intergenic 25.0%
!! TAAGAGGTAATATAGCTTTA+TGG + chr7.2:41762941-41762960 None:intergenic 25.0%
!! TTGGCAGTTATATTTGTTAA+AGG + chr7.2:41761875-41761894 None:intergenic 25.0%
AACGGTTGAGTAAATGTAAA+AGG + chr7.2:41762854-41762873 None:intergenic 30.0%
ACGGTTGAGTAAATGTAAAA+GGG + chr7.2:41762853-41762872 None:intergenic 30.0%
AGAAAAGTTCGTAATATCCA+TGG + chr7.2:41762010-41762029 None:intergenic 30.0%
AGTAAATGTAAAAGGGTGAT+TGG + chr7.2:41762846-41762865 None:intergenic 30.0%
CAAATTATTGTATGTGCAAG+GGG - chr7.2:41762377-41762396 MS.gene46088:CDS 30.0%
CACAAAAGCAGAAAAATAAG+AGG + chr7.2:41762957-41762976 None:intergenic 30.0%
CATTGTCAGTTAGAAGATAT+CGG - chr7.2:41762613-41762632 MS.gene46088:CDS 30.0%
CCTCGAAAATACAATATAGA+AGG - chr7.2:41762657-41762676 MS.gene46088:CDS 30.0%
GAATTGTACGTTTAATAGGA+GGG - chr7.2:41762451-41762470 MS.gene46088:intron 30.0%
GCATAATAGTATAGCTGATT+TGG - chr7.2:41762500-41762519 MS.gene46088:intron 30.0%
GGATCTACTAAAATGTTCTT+TGG - chr7.2:41762203-41762222 MS.gene46088:CDS 30.0%
GGTTGTTTAGTAATAGGTAT+TGG - chr7.2:41762141-41762160 MS.gene46088:CDS 30.0%
TAATAAGCTTCACAGTGATT+TGG + chr7.2:41762341-41762360 None:intergenic 30.0%
TAATCTTCTGATGAATTAGC+TGG + chr7.2:41761751-41761770 None:intergenic 30.0%
! CCTTCTATATTGTATTTTCG+AGG + chr7.2:41762660-41762679 None:intergenic 30.0%
! GACTTGTATTTTACAGGTAT+TGG - chr7.2:41762182-41762201 MS.gene46088:CDS 30.0%
! GTTTAATGTTAGACTGACTT+AGG - chr7.2:41762990-41763009 MS.gene46088:CDS 30.0%
!!! ACTGACAGATTTGTTTTTAG+GGG - chr7.2:41762239-41762258 MS.gene46088:CDS 30.0%
!!! CACTGACAGATTTGTTTTTA+GGG - chr7.2:41762238-41762257 MS.gene46088:CDS 30.0%
!!! TTGTTTTCTGGCTAAATGTT+TGG - chr7.2:41762120-41762139 MS.gene46088:CDS 30.0%
AAACCACAAGAGAAGAATCT+TGG + chr7.2:41762297-41762316 None:intergenic 35.0%
AAATATAACTGCCAAGAGTG+CGG - chr7.2:41761880-41761899 MS.gene46088:CDS 35.0%
AAGTTCTGTGAAGGAAATGA+CGG - chr7.2:41762059-41762078 MS.gene46088:CDS 35.0%
AGCTTCTTGACATTACCTTT+AGG - chr7.2:41761586-41761605 MS.gene46088:intron 35.0%
AGTCTTGCAATAGTACCTAA+AGG + chr7.2:41761604-41761623 None:intergenic 35.0%
ATCATAACTGAACGGTTCAA+AGG + chr7.2:41761910-41761929 None:intergenic 35.0%
CCTAAAAACAAATCTGTCAG+TGG + chr7.2:41762240-41762259 None:intergenic 35.0%
CGTCAACAGAAGTTTCAAAA+CGG + chr7.2:41762872-41762891 None:intergenic 35.0%
CTGAATACATGAATCGTTTG+AGG - chr7.2:41761845-41761864 MS.gene46088:CDS 35.0%
GGAATTGTACGTTTAATAGG+AGG - chr7.2:41762450-41762469 MS.gene46088:intron 35.0%
GGGTGCAACCTTTATTATTA+AGG - chr7.2:41761960-41761979 MS.gene46088:CDS 35.0%
TTAATAGGAGGGAGTTCATT+GGG - chr7.2:41762462-41762481 MS.gene46088:intron 35.0%
TTCAGCAAACAAGACTTTGT+TGG + chr7.2:41761536-41761555 None:intergenic 35.0%
TTTAATAGGAGGGAGTTCAT+TGG - chr7.2:41762461-41762480 MS.gene46088:intron 35.0%
TTTGTTCACCAGAAGTTTCA+AGG + chr7.2:41761509-41761528 None:intergenic 35.0%
! AAAAAGTGCAAGTTCTGTGA+AGG - chr7.2:41762050-41762069 MS.gene46088:CDS 35.0%
! CAAGATTGTTGTTCCTCAAT+TGG - chr7.2:41762560-41762579 MS.gene46088:CDS 35.0%
! TCACTTGCTAACTGAAGTTA+AGG - chr7.2:41763119-41763138 MS.gene46088:CDS 35.0%
! TTTTCTCTGCTACAGAACTT+AGG - chr7.2:41762024-41762043 MS.gene46088:CDS 35.0%
!! CCACTGACAGATTTGTTTTT+AGG - chr7.2:41762237-41762256 MS.gene46088:CDS 35.0%
!! TTTTGTTTCGGAAGAAGCAA+GGG - chr7.2:41762536-41762555 MS.gene46088:CDS 35.0%
AAAAGGGTGATTGGAGACAA+AGG + chr7.2:41762837-41762856 None:intergenic 40.0%
AACTTCTGTTGACGATCTGA+AGG - chr7.2:41762878-41762897 MS.gene46088:CDS 40.0%
AAGGAGAAGGTTGTCACTAT+TGG - chr7.2:41762897-41762916 MS.gene46088:CDS 40.0%
ACAGAAAACCATCCATAGAG+GGG - chr7.2:41762271-41762290 MS.gene46088:CDS 40.0%
ACCAAGAATTTACGTGGTCA+CGG - chr7.2:41762794-41762813 MS.gene46088:CDS 40.0%
AGACAGAAAACCATCCATAG+AGG - chr7.2:41762269-41762288 MS.gene46088:CDS 40.0%
CGATTCATGTATTCAGAGCA+AGG + chr7.2:41761841-41761860 None:intergenic 40.0%
CTTGCTAACTGAAGTTAAGG+AGG - chr7.2:41763122-41763141 MS.gene46088:CDS 40.0%
GAACTCACTCTATCATTGTG+TGG - chr7.2:41761669-41761688 MS.gene46088:intron 40.0%
GACAGAAAACCATCCATAGA+GGG - chr7.2:41762270-41762289 MS.gene46088:CDS 40.0%
GGGGGAATTGTACGTTTAAT+AGG - chr7.2:41762447-41762466 MS.gene46088:intron 40.0%
GGTCACTGTCACTAAAGAAA+AGG - chr7.2:41762080-41762099 MS.gene46088:CDS 40.0%
GTAGAGAAAGAGTCAAGCAT+GGG - chr7.2:41761625-41761644 MS.gene46088:intron 40.0%
TAGAGAAAGAGTCAAGCATG+GGG - chr7.2:41761626-41761645 MS.gene46088:intron 40.0%
TATCAATCACCTTCACTGAC+TGG - chr7.2:41762750-41762769 MS.gene46088:CDS 40.0%
TCCACATCTGCTCTATCAAA+CGG - chr7.2:41763090-41763109 MS.gene46088:CDS 40.0%
TCTGGGAACATTGATAAGGA+AGG - chr7.2:41761711-41761730 MS.gene46088:CDS 40.0%
TGTAGAGAAAGAGTCAAGCA+TGG - chr7.2:41761624-41761643 MS.gene46088:intron 40.0%
TGTCACTATTGGCATCAAAG+AGG - chr7.2:41762908-41762927 MS.gene46088:CDS 40.0%
! AAATATTGACGGGCCAATTG+AGG + chr7.2:41762576-41762595 None:intergenic 40.0%
! AAGCTTCCTTGTTTCTCCTT+TGG - chr7.2:41762425-41762444 MS.gene46088:intron 40.0%
! AATATAACTGCCAAGAGTGC+GGG - chr7.2:41761881-41761900 MS.gene46088:CDS 40.0%
! AGCTTCCTTGTTTCTCCTTT+GGG - chr7.2:41762426-41762445 MS.gene46088:intron 40.0%
! CTGCAATGGATTTGTGAACA+GGG - chr7.2:41761939-41761958 MS.gene46088:CDS 40.0%
! TCTGCAATGGATTTGTGAAC+AGG - chr7.2:41761938-41761957 MS.gene46088:CDS 40.0%
! TGCAATGGATTTGTGAACAG+GGG - chr7.2:41761940-41761959 MS.gene46088:CDS 40.0%
!! GTGCATAAGAAGTACTCTGT+GGG + chr7.2:41761811-41761830 None:intergenic 40.0%
!!! GTTTTGTTTCGGAAGAAGCA+AGG - chr7.2:41762535-41762554 MS.gene46088:CDS 40.0%
AAACGTACAATTCCCCCCAA+AGG + chr7.2:41762444-41762463 None:intergenic 45.0%
ACCGTTTGATAGAGCAGATG+TGG + chr7.2:41763094-41763113 None:intergenic 45.0%
AGGAGTGACCTTGAAACTTC+TGG - chr7.2:41761498-41761517 MS.gene46088:CDS 45.0%
ATCTGCTCTATCAAACGGTC+TGG - chr7.2:41763095-41763114 MS.gene46088:CDS 45.0%
CATGGGACCAAGAATTTACG+TGG - chr7.2:41762788-41762807 MS.gene46088:CDS 45.0%
GACTGTCATGCAAAACTCCA+TGG - chr7.2:41761990-41762009 MS.gene46088:CDS 45.0%
GAGACAAAGGTGAAATGACC+AGG + chr7.2:41762824-41762843 None:intergenic 45.0%
GCAGTGTCTCAGCATATTGA+AGG - chr7.2:41763056-41763075 MS.gene46088:CDS 45.0%
GCTGCTACTCAATCACAAGA+AGG - chr7.2:41761478-41761497 MS.gene46088:CDS 45.0%
GGCTACGAACGTTATGTCAT+GGG - chr7.2:41762771-41762790 MS.gene46088:CDS 45.0%
GGTGTCTGGGAACATTGATA+AGG - chr7.2:41761707-41761726 MS.gene46088:CDS 45.0%
GTATTCAGAGCAAGGAAACG+TGG + chr7.2:41761833-41761852 None:intergenic 45.0%
GTGTGGAAGATCTCGATGAA+GGG - chr7.2:41761686-41761705 MS.gene46088:intron 45.0%
TCCGTGACCACGTAAATTCT+TGG + chr7.2:41762798-41762817 None:intergenic 45.0%
TGGCTACGAACGTTATGTCA+TGG - chr7.2:41762770-41762789 MS.gene46088:CDS 45.0%
TGTGTGGAAGATCTCGATGA+AGG - chr7.2:41761685-41761704 MS.gene46088:intron 45.0%
TGTTGACGATCTGAAGGAGA+AGG - chr7.2:41762884-41762903 MS.gene46088:CDS 45.0%
! CTTCCTTGTTTCTCCTTTGG+GGG - chr7.2:41762428-41762447 MS.gene46088:intron 45.0%
! GCTTCCTTGTTTCTCCTTTG+GGG - chr7.2:41762427-41762446 MS.gene46088:intron 45.0%
! TTCCTTGTTTCTCCTTTGGG+GGG - chr7.2:41762429-41762448 MS.gene46088:intron 45.0%
!! GGTGCATAAGAAGTACTCTG+TGG + chr7.2:41761812-41761831 None:intergenic 45.0%
AATCTTGGCCCCTCTATGGA+TGG + chr7.2:41762282-41762301 None:intergenic 50.0%
GAAGAATCTTGGCCCCTCTA+TGG + chr7.2:41762286-41762305 None:intergenic 50.0%
GGGCCAAGATTCTTCTCTTG+TGG - chr7.2:41762291-41762310 MS.gene46088:CDS 50.0%
TCAAAGGATTCCCGCACTCT+TGG + chr7.2:41761894-41761913 None:intergenic 50.0%
TTCCCCCCAAAGGAGAAACA+AGG + chr7.2:41762434-41762453 None:intergenic 50.0%
!! AGATCTCGATGAAGGGTGTC+TGG - chr7.2:41761693-41761712 MS.gene46088:intron 50.0%
!! GATCTCGATGAAGGGTGTCT+GGG - chr7.2:41761694-41761713 MS.gene46088:intron 50.0%
AGCATGGGGTCAGTCACACT+TGG - chr7.2:41761640-41761659 MS.gene46088:intron 55.0%
CGTTCGTAGCCAGTCAGTGA+AGG + chr7.2:41762762-41762781 None:intergenic 55.0%
TTACGTGGTCACGGATGACC+TGG - chr7.2:41762803-41762822 MS.gene46088:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 41761472 41763158 41761472 ID=MS.gene46088
chr7.2 mRNA 41761472 41763158 41761472 ID=MS.gene46088.t1;Parent=MS.gene46088
chr7.2 exon 41762529 41763158 41762529 ID=MS.gene46088.t1.exon1;Parent=MS.gene46088.t1
chr7.2 CDS 41762529 41763158 41762529 ID=cds.MS.gene46088.t1;Parent=MS.gene46088.t1
chr7.2 exon 41761701 41762432 41761701 ID=MS.gene46088.t1.exon2;Parent=MS.gene46088.t1
chr7.2 CDS 41761701 41762432 41761701 ID=cds.MS.gene46088.t1;Parent=MS.gene46088.t1
chr7.2 exon 41761472 41761570 41761472 ID=MS.gene46088.t1.exon3;Parent=MS.gene46088.t1
chr7.2 CDS 41761472 41761570 41761472 ID=cds.MS.gene46088.t1;Parent=MS.gene46088.t1
Gene Sequence

>MS.gene46088

ATGGCTGCTGCTACTCAATCACAAGAAGGAGTGACCTTGAAACTTCTGGTGAACAAAGACACCAACAAAGTCTTGTTTGCTGAAGCTGAGAAAGATTTTGCAGATGTTCTCTTTAGCTTCTTGACATTACCTTTAGGTACTATTGCAAGACTTGTAGAGAAAGAGTCAAGCATGGGGTCAGTCACACTTGGCTGTCTGAACTCACTCTATCATTGTGTGGAAGATCTCGATGAAGGGTGTCTGGGAACATTGATAAGGAAGGAAATGCTGTTGCAGCCAGCTAATTCATCAGAAGATTATTGTAGCAGTCTTAAACTTAATATCGATGACACTGATCCCACAGAGTACTTCTTATGCACCACGTTTCCTTGCTCTGAATACATGAATCGTTTGAGGATTTCCTTTAACAAATATAACTGCCAAGAGTGCGGGAATCCTTTGAACCGTTCAGTTATGATGAAAAAATTCTGCAATGGATTTGTGAACAGGGGTGCAACCTTTATTATTAAGGATGATTTGACTGTCATGCAAAACTCCATGGATATTACGAACTTTTCTCTGCTACAGAACTTAGGAATAAAAAGTGCAAGTTCTGTGAAGGAAATGACGGTCACTGTCACTAAAGAAAAGGTTTTATATTTCAATTTCTTGTTTTCTGGCTAAATGTTTGGTTGTTTAGTAATAGGTATTGGATCAATTCGTTTTTAAATGACTTGTATTTTACAGGTATTGGATCTACTAAAATGTTCTTTGGTATCAAAGACACCACTGACAGATTTGTTTTTAGGGGAAAATAAAGACAGAAAACCATCCATAGAGGGGCCAAGATTCTTCTCTTGTGGTTTTGAGAACAATAGTGATAGAATCCAAATCACTGTGAAGCTTATTATAAGAAAATCGGACAACAAATTATTGTATGTGCAAGGGGATTACGATTTTGCGAACAAACTTTTAAGCTTCCTTGTTTCTCCTTTGGGGGGAATTGTACGTTTAATAGGAGGGAGTTCATTGGGAAGCATTGATGCTTTGCATAATAGTATAGCTGATTTGGATAATTTTGAATGTTTTGTTTCGGAAGAAGCAAGGGACAAGATTGTTGTTCCTCAATTGGCCCGTCAATATTTTGATTTAAGCAAGGAAACATTGTCAGTTAGAAGATATCGGAGTTATTACTGTTATTACGAACCTCGAAAATACAATATAGAAGGTATTGGTCACAATCAAGTTTTCATTACCAATGAACGTTTATATTATTTAGGAAATTGTTGTGAATTGTATTATCAATCACCTTCACTGACTGGCTACGAACGTTATGTCATGGGACCAAGAATTTACGTGGTCACGGATGACCTGGTCATTTCACCTTTGTCTCCAATCACCCTTTTACATTTACTCAACCGTTTTGAAACTTCTGTTGACGATCTGAAGGAGAAGGTTGTCACTATTGGCATCAAAGAGGTAATAGACCATAAAGCTATATTACCTCTTATTTTTCTGCTTTTGTGTTTGAACTTCGAAGTTTAATGTTAGACTGACTTAGGAAGTATTTTATAGCAAATGTTCACTTTAGCTTGTTTTCATTTTGCAGTGTCTCAGCATATTGAAGGCAGCTTTAACATCCACATCTGCTCTATCAAACGGTCTGGCTCACTTGCTAACTGAAGTTAAGGAGGAGATATGTGAATGA
Protein sequence

>MS.gene46088.t1

MAAATQSQEGVTLKLLVNKDTNKVLFAEAEKDFADVLFSFLTLPLGTIARLVEKESSMGSVTLGCLNSLYHCVEDLDEGCLGTLIRKEMLLQPANSSEDYCSSLKLNIDDTDPTEYFLCTTFPCSEYMNRLRISFNKYNCQECGNPLNRSVMMKKFCNGFVNRGATFIIKDDLTVMQNSMDITNFSLLQNLGIKSASSVKEMTVTVTKEKVLDLLKCSLVSKTPLTDLFLGENKDRKPSIEGPRFFSCGFENNSDRIQITVKLIIRKSDNKLLYVQGDYDFANKLLSFLVSPLGGIVRLIGGSSLGSIDALHNSIADLDNFECFVSEEARDKIVVPQLARQYFDLSKETLSVRRYRSYYCYYEPRKYNIEGIGHNQVFITNERLYYLGNCCELYYQSPSLTGYERYVMGPRIYVVTDDLVISPLSPITLLHLLNRFETSVDDLKEKVVTIGIKECLSILKAALTSTSALSNGLAHLLTEVKEEICE