AlfalfaGEDB | MS.gene45940

M. sativa cultivar XinJiangDaYe / MS.gene45940

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45940.t1	RHN46371.1	77	392	30	3	151	511	1	363	7.80E-154	553.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45940.t1	A0A396H1L9	77.0	392	30	3	151	511	1	363	5.6e-154	553.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene001103	MS.gene45940	PPI
MS.gene001108	MS.gene45940	PPI
MS.gene001109	MS.gene45940	PPI
MS.gene007488	MS.gene45940	PPI
MS.gene009400	MS.gene45940	PPI
MS.gene010675	MS.gene45940	PPI
MS.gene037535	MS.gene45940	PPI
MS.gene037538	MS.gene45940	PPI
MS.gene037539	MS.gene45940	PPI
MS.gene037540	MS.gene45940	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45940.t1	MTR_7g058710	61.220	508	159	8	2	503	3	478	0.0	581
MS.gene45940.t1	MTR_7g066570	60.784	510	166	4	1	504	1	482	0.0	576
MS.gene45940.t1	MTR_2g029400	59.879	496	104	8	1	492	1	405	0.0	521
MS.gene45940.t1	MTR_7g012680	56.832	505	161	5	1	505	1	448	7.41e-179	510
MS.gene45940.t1	MTR_7g066680	80.323	310	27	2	233	511	38	344	1.37e-173	493
MS.gene45940.t1	MTR_7g066260	53.021	513	185	10	1	505	1	465	7.81e-167	481
MS.gene45940.t1	MTR_7g058700	56.250	480	120	6	26	503	531	922	1.15e-162	485
MS.gene45940.t1	MTR_7g066340	53.216	513	184	11	1	509	1	461	5.18e-160	463
MS.gene45940.t1	MTR_7g066580	51.497	501	173	10	20	506	1	445	2.45e-154	447
MS.gene45940.t1	MTR_1g041315	51.527	491	193	9	1	486	1	451	1.63e-151	442

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45940.t1	AT5G01120	32.470	502	303	10	11	498	6	485	8.07e-69	229
MS.gene45940.t1	AT5G01150	30.709	508	306	10	14	507	9	484	7.72e-62	211
MS.gene45940.t1	AT5G01150	23.333	240	151	6	276	496	4	229	8.48e-11	64.7
MS.gene45940.t1	AT5G43240	30.476	525	287	13	11	498	6	489	3.32e-56	196
MS.gene45940.t1	AT5G43240	30.476	525	287	13	11	498	6	489	3.32e-56	196
MS.gene45940.t1	AT5G43240	30.476	525	287	13	11	498	6	489	3.32e-56	196
MS.gene45940.t1	AT3G09140	30.037	546	310	15	11	508	6	527	2.37e-54	191
MS.gene45940.t1	AT3G09140	30.037	536	295	15	11	508	6	499	9.48e-54	189
MS.gene45940.t1	AT3G09140	26.316	247	150	8	276	496	4	244	4.13e-12	68.9
MS.gene45940.t1	AT5G01130	30.080	502	293	9	1	502	1	444	1.63e-50	179

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Find 66 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACCGTCTGTATACA+TGG	0.517518	7.2:+45119082	MS.gene45940:CDS
AAATACGAAGTCAGTTAAAG+GGG	0.611325	7.2:-45118520	None:intergenic
AAGAAACATCTGAAGAGGGT+AGG	0.591438	7.2:+45118604	MS.gene45940:CDS
AAGAATCAAAAGTGCAGTTG+CGG	0.582776	7.2:+45118165	MS.gene45940:CDS
AAGCTTGAAATCACAAACAT+TGG	0.547176	7.2:+45118333	MS.gene45940:CDS
AATATTGAAGCAGTTCAATT+TGG	0.301162	7.2:+45117925	MS.gene45940:CDS
AATTACGTTGAGAGTTATGG+TGG	0.607698	7.2:+45117786	MS.gene45940:CDS
ACGAAGAGAGCGAATCCACC+GGG	0.552296	7.2:-45118958	None:intergenic
AGAGAAGAAACATCTGAAGA+GGG	0.601746	7.2:+45118600	MS.gene45940:CDS
AGCACTTCGTGTGCGAGAAG+TGG	0.551108	7.2:+45118100	MS.gene45940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACGAAGTCAGTTAAAG+GGG	-	chr7.2:45118523-45118542	None:intergenic	30.0%
AAGCTTGAAATCACAAACAT+TGG	+	chr7.2:45118333-45118352	MS.gene45940:CDS	30.0%
ATCAGAAATGATTAATGTGG+CGG	-	chr7.2:45118262-45118281	None:intergenic	30.0%
ATGATAATAATAGACAGGCA+AGG	-	chr7.2:45118925-45118944	None:intergenic	30.0%
CAAAATTACGTTGAGAGTTA+TGG	+	chr7.2:45117783-45117802	MS.gene45940:CDS	30.0%
TCTTCTCTATTCTTAAACTC+TGG	-	chr7.2:45118588-45118607	None:intergenic	30.0%
TGTGACGTTAAATATGTATC+TGG	-	chr7.2:45118819-45118838	None:intergenic	30.0%
TTCAACAAACAAAATCTCTC+TGG	-	chr7.2:45118664-45118683	None:intergenic	30.0%
AATTACGTTGAGAGTTATGG+TGG	+	chr7.2:45117786-45117805	MS.gene45940:CDS	35.0%
AGAGAAGAAACATCTGAAGA+GGG	+	chr7.2:45118600-45118619	MS.gene45940:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	45117745	45119415	45117745	ID=MS.gene45940
chr7.2	mRNA	45117745	45119415	45117745	ID=MS.gene45940.t1;Parent=MS.gene45940
chr7.2	exon	45117745	45118440	45117745	ID=MS.gene45940.t1.exon1;Parent=MS.gene45940.t1
chr7.2	CDS	45117745	45118440	45117745	ID=cds.MS.gene45940.t1;Parent=MS.gene45940.t1
chr7.2	exon	45118483	45119223	45118483	ID=MS.gene45940.t1.exon2;Parent=MS.gene45940.t1
chr7.2	CDS	45118483	45119223	45118483	ID=cds.MS.gene45940.t1;Parent=MS.gene45940.t1
chr7.2	exon	45119317	45119415	45119317	ID=MS.gene45940.t1.exon3;Parent=MS.gene45940.t1
chr7.2	CDS	45119317	45119415	45119317	ID=cds.MS.gene45940.t1;Parent=MS.gene45940.t1

Gene Sequence

>MS.gene45940

ATGGCTGACGGTGCAACTGAATCTGTTGAACAAAATGACAAAATTACGTTGAGAGTTATGGTGGATAAAGAAAGTAACAAAGTTCTGTATGCTGAAGCAGTGAAGGATTTTGTTGATGTTCTCTTAAGCTTCTTTACCTTGCCCTTAGGTACTATTGCAAGACTCGTTGCTACAGACTCAAATATTGAAGCAGTTCAATTTGGCAGCATTAGCTCACTGTATCAAAGTGTAAAAGATCTTGATCAACAATATTTATGCACAAATACCTGCAAGGAAATGCTGCTGCAGCCAAGAAGCTCTATGGAAGCTTATTGTCAAAAGCTCAAACTGAATATAGACGACACAGAACCTTTGCAGCACTTCGTGTGCGAGAAGTGGGATTGTGTTAGAAAGCAAAGTGGAGCCCGTTTGAGCATTTTTAAGAATCAAAAGTGCAGTTGCGGAAAAGTAATGAACCTAGTAATGTCCCCACCAAAAGAAATTTTGAGTTTAGGAAATGGCTTTGCTAAGGAAACCGCCACATTAATCATTTCTGATGATCTTACTGTGATGCCTAATGTTTTTGGAACAATTATACCACTACTTCAAAAGCTTGAAATCACAAACATTGGTGCTATTGTTGAAGAATCTGTCGAAATCAGCAAGCAAGAGGCATCCTCTCTATATATAAATCTCATCTTTTTATATCATTATTTTGTTAGTTGATTTTTTTTTCTCATCAAATATTCATTTTTGTAGATAACTGATATTCTCAAGTTGTCATTCGTCTCAAAGACCCCTTTAACTGACTTCGTATTTAAGAAGAAACATTTCTGTGATGAATTTGTCAAGACAAACCAACCAGAGTTTAAGAATAGAGAAGAAACATCTGAAGAGGGTAGGCAGATGTCTGTGAAAGTTTTGCAAAGAAAATCAACCAGAGAGATTTTGTTTGTTGAAGGAGGGGTAGATTTTATTGACTTTATTTTTAGTTTTCTAACCTTCCCCTTGGGGGGAGTGTTGCATATGCTTCAAGGATTCTCTTCTTTAAGCTGCATTGATAATTTATATAAAAGCGTAACTGAGTTGAGTCCAGATACATATTTAACGTCACAAGAACTTAAAGATAAACTAACTAAGCCTCCCATTGCAGCACAATTTGAGCTCAGCAATCCAACTTTACCAATTTCTGCAGATACCTTGCCTGTCTATTATTATCATACTTACTATAATTCCCGGTGGATTCGCTCTCTTCGTATTACATATTATTGTTGTGGTTCTGATGATAGGTGTGTACTTTTGAATTTTGTTGATCCTAAGTATTCTGCTTTAAAATCATCAAGTTGTGGAGAATTTGCAAAAGGACCGTCTGTATACATGGTTACAGATGACTTGGTTGTGACTCCAGCCTCATCCTTCAATGCTATTTCACATCTAAAGAGTTTAAATGTTCCTCTATGTGATGTAGAGGAAAAAGTGGTTAGAATTGGTGTGAACGAGGTAATTCACGACTTACGACTTTTCACGTTGTTATCGCAATTAATTTTCATTTCCATACATCATTACAGTGCTTTGTTTGTTTACATGTTTCAGGGTCTCAGCATTCTTATGGCTTCATTGACCTCAACGTCTGCTTTTACAAATGGTCTCAACCAATTCTTAACAACAACCATTAAGGGAAATGACCATTGA

Protein sequence

>MS.gene45940.t1

MADGATESVEQNDKITLRVMVDKESNKVLYAEAVKDFVDVLLSFFTLPLGTIARLVATDSNIEAVQFGSISSLYQSVKDLDQQYLCTNTCKEMLLQPRSSMEAYCQKLKLNIDDTEPLQHFVCEKWDCVRKQSGARLSIFKNQKCSCGKVMNLVMSPPKEILSLGNGFAKETATLIISDDLTVMPNVFGTIIPLLQKLEITNIGAIVEESVEISKQEASSLYINLIFLYHYFITDILKLSFVSKTPLTDFVFKKKHFCDEFVKTNQPEFKNREETSEEGRQMSVKVLQRKSTREILFVEGGVDFIDFIFSFLTFPLGGVLHMLQGFSSLSCIDNLYKSVTELSPDTYLTSQELKDKLTKPPIAAQFELSNPTLPISADTLPVYYYHTYYNSRWIRSLRITYYCCGSDDRCVLLNFVDPKYSALKSSSCGEFAKGPSVYMVTDDLVVTPASSFNAISHLKSLNVPLCDVEEKVVRIGVNEGLSILMASLTSTSAFTNGLNQFLTTTIKGNDH