AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055002

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055002.t1 MTR_7g058710 63.265 490 155 9 5 486 6 478 0.0 578
MS.gene055002.t1 MTR_7g066570 62.551 494 166 5 1 487 1 482 0.0 578
MS.gene055002.t1 MTR_7g012680 58.607 488 162 6 1 488 1 448 1.82e-180 513
MS.gene055002.t1 MTR_2g029400 59.875 481 111 9 1 475 1 405 5.94e-178 505
MS.gene055002.t1 MTR_7g066680 82.168 286 20 1 228 482 50 335 4.25e-165 470
MS.gene055002.t1 MTR_7g066260 53.049 492 189 7 6 488 7 465 6.58e-163 471
MS.gene055002.t1 MTR_7g066260 27.119 236 155 8 254 478 5 234 8.31e-16 80.1
MS.gene055002.t1 MTR_7g058700 55.115 479 110 6 26 486 531 922 7.19e-159 474
MS.gene055002.t1 MTR_7g066580 53.719 484 171 11 20 489 1 445 4.93e-154 446
MS.gene055002.t1 MTR_7g066340 53.768 491 186 11 8 492 6 461 8.14e-153 444
MS.gene055002.t1 MTR_1g041315 50.716 489 183 10 1 469 1 451 2.35e-147 431
MS.gene055002.t1 MTR_7g066350 52.577 485 175 13 10 482 5 446 3.49e-143 419
MS.gene055002.t1 MTR_7g066290 48.374 492 185 10 2 485 3 433 2.50e-135 398
MS.gene055002.t1 MTR_7g066400 47.619 483 185 9 10 481 8 433 2.07e-129 383
MS.gene055002.t1 MTR_7g066360 46.774 496 206 11 1 485 1 449 2.13e-127 379
MS.gene055002.t1 MTR_7g066430 45.102 490 253 8 14 490 4 490 2.14e-126 377
MS.gene055002.t1 MTR_7g066430 26.582 237 138 9 4 221 247 466 9.97e-11 64.3
MS.gene055002.t1 MTR_7g066410 44.048 504 249 8 15 486 11 513 3.32e-123 370
MS.gene055002.t1 MTR_7g066410 27.468 233 143 7 2 221 274 493 1.80e-12 69.7
MS.gene055002.t1 MTR_7g066310 46.281 484 162 11 11 492 4 391 7.77e-119 355
MS.gene055002.t1 MTR_7g063660 38.229 497 258 12 10 486 5 472 6.18e-96 298
MS.gene055002.t1 MTR_7g063660 28.631 241 129 9 259 478 4 222 1.25e-15 79.7
MS.gene055002.t1 MTR_7g063900 39.960 498 270 11 4 487 2 484 3.16e-95 297
MS.gene055002.t1 MTR_7g063820 40.041 487 273 11 8 486 4 479 7.93e-95 296
MS.gene055002.t1 MTR_7g063880 41.566 498 244 17 1 486 1 463 1.74e-94 295
MS.gene055002.t1 MTR_7g062300 38.086 491 266 12 5 481 3 469 3.40e-93 291
MS.gene055002.t1 MTR_7g062280 37.876 499 276 12 6 486 4 486 8.53e-93 291
MS.gene055002.t1 MTR_7g063890 41.129 496 261 12 13 493 26 505 2.79e-91 287
MS.gene055002.t1 MTR_7g066280 42.263 433 182 11 93 492 1 398 3.57e-88 276
MS.gene055002.t1 MTR_7g063840 36.273 499 274 15 1 486 1 468 9.39e-85 270
MS.gene055002.t1 MTR_7g063920 34.979 486 258 8 4 486 1 431 1.27e-80 258
MS.gene055002.t1 MTR_3g007740 37.423 489 238 12 13 486 8 443 1.16e-79 255
MS.gene055002.t1 MTR_7g063830 36.145 498 249 14 8 492 4 445 1.62e-79 255
MS.gene055002.t1 MTR_4g019310 34.263 502 279 13 11 481 5 486 1.97e-79 256
MS.gene055002.t1 MTR_4g019310 30.734 218 136 9 10 221 262 470 6.99e-11 64.7
MS.gene055002.t1 MTR_1g014060 62.312 199 72 2 23 221 9 204 6.80e-79 251
MS.gene055002.t1 MTR_1g014060 52.217 203 79 3 285 487 202 386 1.06e-52 183
MS.gene055002.t1 MTR_1g014060 26.923 208 136 7 271 470 9 208 5.19e-11 64.7
MS.gene055002.t1 MTR_3g065200 36.559 465 230 10 14 472 3 408 5.68e-78 251
MS.gene055002.t1 MTR_7g063670 35.124 484 255 11 15 486 16 452 3.86e-72 236
MS.gene055002.t1 MTR_4g017610 35.000 500 272 14 7 482 6 476 5.53e-70 231
MS.gene055002.t1 MTR_4g017610 27.059 255 164 7 255 494 4 251 2.27e-11 66.2
MS.gene055002.t1 MTR_4g017440 33.592 515 299 14 1 485 1 502 3.61e-68 227
MS.gene055002.t1 MTR_4g017830 33.849 517 288 17 4 484 2 500 5.46e-68 227
MS.gene055002.t1 MTR_4g017410 33.988 509 280 16 8 486 3 485 2.67e-67 224
MS.gene055002.t1 MTR_4g019340 33.947 489 267 13 15 473 39 501 3.62e-66 222
MS.gene055002.t1 MTR_4g019340 33.333 114 69 3 4 117 293 399 1.45e-11 67.0
MS.gene055002.t1 MTR_7g066480 40.385 364 193 9 13 365 15 365 4.06e-65 217
MS.gene055002.t1 MTR_7g066480 53.846 78 36 0 413 490 349 426 1.53e-16 82.0
MS.gene055002.t1 MTR_7g066490 41.088 331 158 8 14 334 16 319 7.23e-62 208
MS.gene055002.t1 MTR_7g066490 53.846 78 36 0 413 490 335 412 5.16e-16 80.5
MS.gene055002.t1 MTR_4g017470 29.651 516 285 11 4 486 1 471 2.80e-54 190
MS.gene055002.t1 MTR_4g017550 33.333 480 257 17 41 483 18 471 2.06e-51 182
MS.gene055002.t1 MTR_7g063720 38.865 229 120 2 264 491 23 232 3.17e-44 156
MS.gene055002.t1 MTR_7g063720 25.243 206 129 5 17 221 26 207 8.23e-14 71.6
MS.gene055002.t1 MTR_7g062270 42.289 201 97 7 1 193 1 190 1.39e-38 145
MS.gene055002.t1 MTR_2g067310 45.143 175 53 4 26 200 59 190 1.08e-34 130
MS.gene055002.t1 MTR_7g063850 31.290 310 170 10 190 486 4 283 1.61e-26 109
MS.gene055002.t1 MTR_7g066390 38.674 181 52 4 305 485 1 122 5.60e-26 103
MS.gene055002.t1 MTR_8g023240 24.843 479 309 17 15 477 38 481 2.15e-25 110
MS.gene055002.t1 MTR_1g115440 31.513 238 136 8 258 478 5 232 6.22e-24 100
MS.gene055002.t1 MTR_1g115440 29.956 227 143 5 4 221 1 220 1.18e-22 97.1
MS.gene055002.t1 MTR_7g100420 31.212 330 190 9 164 481 89 393 4.62e-21 95.5
MS.gene055002.t1 MTR_7g100420 66.667 42 14 0 15 56 40 81 2.12e-11 66.2
MS.gene055002.t1 MTR_0150s0010 29.060 234 128 5 8 221 4 219 7.00e-21 92.0
MS.gene055002.t1 MTR_0150s0010 32.000 225 140 7 264 478 10 231 3.84e-19 87.0
MS.gene055002.t1 MTR_8g445860 27.426 237 151 5 14 239 13 239 2.32e-20 90.5
MS.gene055002.t1 MTR_4g019240 40.870 115 58 4 10 116 9 121 1.88e-16 77.8
MS.gene055002.t1 MTR_1g115450 37.209 86 49 1 14 99 7 87 4.05e-15 72.8
MS.gene055002.t1 MTR_7g063690 34.000 150 88 5 145 291 81 222 8.61e-15 74.3
MS.gene055002.t1 MTR_7g063690 62.500 48 18 0 15 62 13 60 2.38e-11 64.3
MS.gene055002.t1 MTR_1g115455 39.535 86 47 1 14 99 9 89 1.26e-13 70.9
MS.gene055002.t1 MTR_1g115470 36.364 99 56 2 12 108 4 97 3.98e-13 71.6
MS.gene055002.t1 MTR_7g063760 48.529 68 34 1 420 486 1 68 5.43e-12 61.6
MS.gene055002.t1 MTR_8g445920 33.708 89 54 1 8 96 4 87 5.67e-11 60.1
MS.gene055002.t1 MTR_8g044890 33.708 89 54 1 8 96 4 87 5.67e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055002.t1 AT5G01120 33.060 487 303 9 11 481 6 485 1.83e-71 236
MS.gene055002.t1 AT5G01150 31.737 501 293 11 14 490 9 484 1.05e-63 215
MS.gene055002.t1 AT5G43240 31.569 510 284 13 11 481 6 489 5.41e-60 206
MS.gene055002.t1 AT5G43240 31.569 510 284 13 11 481 6 489 5.41e-60 206
MS.gene055002.t1 AT5G43240 31.569 510 284 13 11 481 6 489 5.41e-60 206
MS.gene055002.t1 AT3G09140 30.843 522 298 15 11 494 6 502 3.86e-54 190
MS.gene055002.t1 AT3G09140 29.508 549 298 16 11 494 6 530 3.38e-50 179
MS.gene055002.t1 AT5G01130 30.947 475 286 11 14 485 9 444 2.85e-49 175
MS.gene055002.t1 AT3G09110 34.483 319 195 6 14 326 9 319 2.35e-48 170
MS.gene055002.t1 AT5G01140 28.980 490 304 11 1 485 1 451 5.45e-47 170
MS.gene055002.t1 AT3G09120 33.438 317 196 6 11 318 3 313 5.25e-46 163
MS.gene055002.t1 AT3G09120 27.092 251 149 8 261 489 3 241 5.57e-14 73.2
MS.gene055002.t1 AT5G37320 28.235 510 297 19 15 491 12 485 1.03e-38 147
MS.gene055002.t1 AT5G43240 27.809 356 195 11 163 481 15 345 1.70e-20 93.6

Find 64 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTGGTCATTTCCCTTAA+TGG 0.165273 7.4:+36992939 None:intergenic
ATTCTTAACAACAACCATTA+AGG 0.189932 7.4:-36992953 MS.gene055002:CDS
TTAAATAAGAAGTCAGTTAA+AGG 0.199181 7.4:+36993807 None:intergenic
TCAGGGTCTCAGCATTCTTA+TGG 0.239207 7.4:-36993019 MS.gene055002:intron
CTGCAACAGCATTTCCTTGC+AGG 0.240078 7.4:+36994321 None:intergenic
AATATTGAAGCAGTTCAATT+TGG 0.301162 7.4:-36994406 MS.gene055002:CDS
TAAGCTTCCATAGAGCTTCT+TGG 0.318711 7.4:+36994298 None:intergenic
TAAATAAGAAGTCAGTTAAA+GGG 0.346351 7.4:+36993808 None:intergenic
AGCACTTCGTGTGCGAGAAC+TGG 0.346479 7.4:-36994231 MS.gene055002:CDS
GGCAAGGTATCTGCAGAAAT+TGG 0.349648 7.4:+36993423 None:intergenic
GCTTCTTTACCTTGCCCTTA+GGG 0.358047 7.4:-36994459 MS.gene055002:CDS
TGTGATATTAAATATATATC+TGG 0.362387 7.4:+36993513 None:intergenic
ATCATACTTACTATAATTCC+CGG 0.371009 7.4:-36993389 MS.gene055002:CDS
AGCTTCTTTACCTTGCCCTT+AGG 0.372832 7.4:-36994460 MS.gene055002:CDS
TTCTTAACAACAACCATTAA+GGG 0.385405 7.4:-36992952 MS.gene055002:CDS
CTCTATTCTTAAACTCTGGT+TGG 0.385977 7.4:+36993748 None:intergenic
CAAAATTATGTTGAGAGTTA+TGG 0.388287 7.4:-36994548 MS.gene055002:CDS
GTTGCAGCCAAGAAGCTCTA+TGG 0.397642 7.4:-36994305 MS.gene055002:CDS
ATTGTTGTGGTTCTGATGAT+AGG 0.398351 7.4:-36993338 MS.gene055002:CDS
TCTTCTCTATTCTTAAACTC+TGG 0.403389 7.4:+36993744 None:intergenic
TAATGGTTGTTGTTAAGAAT+TGG 0.422993 7.4:+36992956 None:intergenic
TCTGCAGAAATTGGTAAAGT+TGG 0.429039 7.4:+36993432 None:intergenic
TCAACGTCTGCTTTAACATA+TGG 0.448661 7.4:-36992985 MS.gene055002:CDS
CGTATTACATATTATTGTTG+TGG 0.466001 7.4:-36993351 MS.gene055002:CDS
GGAGTGTTGCATATGCTTCA+AGG 0.486168 7.4:-36993591 MS.gene055002:CDS
GCACTTCGTGTGCGAGAACT+GGG 0.496400 7.4:-36994230 MS.gene055002:CDS
GAGTCTTGCAATAGTCCCTA+AGG 0.503426 7.4:+36994444 None:intergenic
TTTAGGAAATGGCTTTGCTA+AGG 0.504499 7.4:-36994098 MS.gene055002:CDS
AGTTGTGGAGAATTTGCAAA+AGG 0.505251 7.4:-36993264 MS.gene055002:CDS
TAAGTATGATAATAATAGAC+AGG 0.516367 7.4:+36993402 None:intergenic
GATTGTGTTAGAAAGCAAAC+TGG 0.523428 7.4:-36994208 MS.gene055002:CDS
GATGAGAGTTATATATAGAG+AGG 0.525677 7.4:+36993931 None:intergenic
TACGAAGAGAGCGAATCCAC+CGG 0.532890 7.4:+36993370 None:intergenic
AATTATGTTGAGAGTTATGG+TGG 0.539632 7.4:-36994545 MS.gene055002:CDS
TTTCTAACCTTCCCCTTGGG+GGG 0.541458 7.4:-36993612 MS.gene055002:CDS
CGTTCCTCTATGTGATGTAG+AGG 0.545687 7.4:-36993157 MS.gene055002:CDS
TAGAGAAGAAACATCTGAAG+AGG 0.545921 7.4:-36993730 MS.gene055002:CDS
AAGCATGAAATCACAAACAT+TGG 0.547176 7.4:-36993998 MS.gene055002:CDS
GTCATCTGTAACCATGTACA+TGG 0.548507 7.4:+36993236 None:intergenic
ACGAAGAGAGCGAATCCACC+GGG 0.552296 7.4:+36993371 None:intergenic
AGGAATCAAAAGTGCAGTTG+TGG 0.559315 7.4:-36994166 MS.gene055002:CDS
TAAATGTGAAATAGCAGTGA+AGG 0.566150 7.4:+36993191 None:intergenic
TCGCACACGAAGTGCTGCAA+AGG 0.567632 7.4:+36994238 None:intergenic
GCTTCAAAATCATCTAGTTG+TGG 0.571039 7.4:-36993279 MS.gene055002:CDS
AGATATATATTTAATATCAC+AGG 0.573456 7.4:-36993511 MS.gene055002:CDS
TCTGTATGCTGAAGCAGTGA+AGG 0.574622 7.4:-36994503 MS.gene055002:CDS
AAAAGGACCATCCATGTACA+TGG 0.580882 7.4:-36993247 MS.gene055002:CDS
TGCAATAGTCCCTAAGGGCA+AGG 0.589160 7.4:+36994450 None:intergenic
AAGAAACATCTGAAGAGGGT+AGG 0.591438 7.4:-36993725 MS.gene055002:CDS
TGTCGAAATCAGCAAGCAAG+AGG 0.593953 7.4:-36993957 MS.gene055002:CDS
ATAGCAGTGAAGGACGAGGT+TGG 0.597541 7.4:+36993201 None:intergenic
AAATAAGAAGTCAGTTAAAG+GGG 0.599305 7.4:+36993809 None:intergenic
AGAGAAGAAACATCTGAAGA+GGG 0.601746 7.4:-36993729 MS.gene055002:CDS
ATCATCAGAAATGATAAATG+TGG 0.618933 7.4:+36994069 None:intergenic
GGTTAGAATTGGTGTGAACG+AGG 0.622070 7.4:-36993127 MS.gene055002:intron
TCTGTAACCATGTACATGGA+TGG 0.622670 7.4:+36993240 None:intergenic
GTACATGGTTACAGATGACT+TGG 0.631772 7.4:-36993232 MS.gene055002:CDS
ATCAGAAATGATAAATGTGG+CGG 0.637794 7.4:+36994072 None:intergenic
TTTATGCACAAATACCTGCA+AGG 0.646419 7.4:-36994335 MS.gene055002:CDS
AGTCTTGCAATAGTCCCTAA+GGG 0.648111 7.4:+36994445 None:intergenic
ATGATAATAATAGACAGGCA+AGG 0.657140 7.4:+36993407 None:intergenic
TGAAATAGCAGTGAAGGACG+AGG 0.664359 7.4:+36993197 None:intergenic
ATATGTTAAAGCAGACGTTG+AGG 0.669842 7.4:+36992987 None:intergenic
ATACTTACTATAATTCCCGG+TGG 0.677154 7.4:-36993386 MS.gene055002:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATATATATTTAATATCAC+AGG - chr7.4:36994014-36994033 MS.gene055002:CDS 15.0%
!! TGTGATATTAAATATATATC+TGG + chr7.4:36994015-36994034 None:intergenic 15.0%
!! TAAATAAGAAGTCAGTTAAA+GGG + chr7.4:36993720-36993739 None:intergenic 20.0%
!! TAAGTATGATAATAATAGAC+AGG + chr7.4:36994126-36994145 None:intergenic 20.0%
!! TTAAATAAGAAGTCAGTTAA+AGG + chr7.4:36993721-36993740 None:intergenic 20.0%
! AAATAAGAAGTCAGTTAAAG+GGG + chr7.4:36993719-36993738 None:intergenic 25.0%
! AATATTGAAGCAGTTCAATT+TGG - chr7.4:36993119-36993138 MS.gene055002:intron 25.0%
! ATAACTGTTCCAAAAACATT+AGG + chr7.4:36993494-36993513 None:intergenic 25.0%
! ATCATACTTACTATAATTCC+CGG - chr7.4:36994136-36994155 MS.gene055002:CDS 25.0%
! ATCATCAGAAATGATAAATG+TGG + chr7.4:36993459-36993478 None:intergenic 25.0%
! ATTCTTAACAACAACCATTA+AGG - chr7.4:36994572-36994591 MS.gene055002:CDS 25.0%
! CAAAATTATGTTGAGAGTTA+TGG - chr7.4:36992977-36992996 MS.gene055002:CDS 25.0%
! CGTATTACATATTATTGTTG+TGG - chr7.4:36994174-36994193 MS.gene055002:CDS 25.0%
! TTCTTAACAACAACCATTAA+GGG - chr7.4:36994573-36994592 MS.gene055002:CDS 25.0%
! TTGTTTGTTTACATGTTTCA+GGG - chr7.4:36994489-36994508 MS.gene055002:CDS 25.0%
! TTTGTTTGTTTACATGTTTC+AGG - chr7.4:36994488-36994507 MS.gene055002:CDS 25.0%
!! AAACTCAAAAATTCTTTTGG+TGG + chr7.4:36993410-36993429 None:intergenic 25.0%
!! AACTCAAAAATTCTTTTGGT+GGG + chr7.4:36993409-36993428 None:intergenic 25.0%
!! CCTAAACTCAAAAATTCTTT+TGG + chr7.4:36993413-36993432 None:intergenic 25.0%
!! TAATGGTTGTTGTTAAGAAT+TGG + chr7.4:36994572-36994591 None:intergenic 25.0%
!!! CCAAAAGAATTTTTGAGTTT+AGG - chr7.4:36993410-36993429 MS.gene055002:CDS 25.0%
!!! GAATTTTTGAGTTTAGGAAA+TGG - chr7.4:36993416-36993435 MS.gene055002:CDS 25.0%
AAGCATGAAATCACAAACAT+TGG - chr7.4:36993527-36993546 MS.gene055002:CDS 30.0%
AATTATGTTGAGAGTTATGG+TGG - chr7.4:36992980-36992999 MS.gene055002:CDS 30.0%
ATCAGAAATGATAAATGTGG+CGG + chr7.4:36993456-36993475 None:intergenic 30.0%
ATGATAATAATAGACAGGCA+AGG + chr7.4:36994121-36994140 None:intergenic 30.0%
ATTCCTAAAAATGCTCAAAC+GGG + chr7.4:36993345-36993364 None:intergenic 30.0%
GATGAGAGTTATATATAGAG+AGG + chr7.4:36993597-36993616 None:intergenic 30.0%
GATTCCTAAAAATGCTCAAA+CGG + chr7.4:36993346-36993365 None:intergenic 30.0%
TAAATGTGAAATAGCAGTGA+AGG + chr7.4:36994337-36994356 None:intergenic 30.0%
TCTTCTCTATTCTTAAACTC+TGG + chr7.4:36993784-36993803 None:intergenic 30.0%
! ACTCAAAAATTCTTTTGGTG+GGG + chr7.4:36993408-36993427 None:intergenic 30.0%
! GTTTTGCAAAGAAAATCAAC+TGG - chr7.4:36993838-36993857 MS.gene055002:intron 30.0%
!! AGATTTTGTTTGTTGAAGGA+GGG - chr7.4:36993863-36993882 MS.gene055002:intron 30.0%
!!! ATTTCATGCTTTTGAAGTAG+TGG + chr7.4:36993518-36993537 None:intergenic 30.0%
!!! GATTTTGAAGCAGAATACTT+AGG + chr7.4:36994237-36994256 None:intergenic 30.0%
AGAGAAGAAACATCTGAAGA+GGG - chr7.4:36993796-36993815 MS.gene055002:CDS 35.0%
AGTTGTGGAGAATTTGCAAA+AGG - chr7.4:36994261-36994280 MS.gene055002:CDS 35.0%
ATACTTACTATAATTCCCGG+TGG - chr7.4:36994139-36994158 MS.gene055002:CDS 35.0%
ATATGTTAAAGCAGACGTTG+AGG + chr7.4:36994541-36994560 None:intergenic 35.0%
ATGTGATGTAGAGGAAAAAG+TGG - chr7.4:36994377-36994396 MS.gene055002:CDS 35.0%
CTCTATTCTTAAACTCTGGT+TGG + chr7.4:36993780-36993799 None:intergenic 35.0%
GAGGAAAAAGTGGTTAGAAT+TGG - chr7.4:36994387-36994406 MS.gene055002:CDS 35.0%
GATTGTGTTAGAAAGCAAAC+TGG - chr7.4:36993317-36993336 MS.gene055002:CDS 35.0%
GCTTCAAAATCATCTAGTTG+TGG - chr7.4:36994246-36994265 MS.gene055002:CDS 35.0%
TAGAGAAGAAACATCTGAAG+AGG - chr7.4:36993795-36993814 MS.gene055002:CDS 35.0%
TCAACGTCTGCTTTAACATA+TGG - chr7.4:36994540-36994559 MS.gene055002:CDS 35.0%
TCATTGGTCATTTCCCTTAA+TGG + chr7.4:36994589-36994608 None:intergenic 35.0%
TCTGCAGAAATTGGTAAAGT+TGG + chr7.4:36994096-36994115 None:intergenic 35.0%
TTTATGCACAAATACCTGCA+AGG - chr7.4:36993190-36993209 MS.gene055002:CDS 35.0%
! ACTGTGATGCCTAATGTTTT+TGG - chr7.4:36993482-36993501 MS.gene055002:CDS 35.0%
! AGCTCAAATTTTGCTGCAAT+GGG + chr7.4:36994066-36994085 None:intergenic 35.0%
! TTTAGGAAATGGCTTTGCTA+AGG - chr7.4:36993427-36993446 MS.gene055002:CDS 35.0%
! TTTTCCTCTACATCACATAG+AGG + chr7.4:36994375-36994394 None:intergenic 35.0%
!! ATTGTTGTGGTTCTGATGAT+AGG - chr7.4:36994187-36994206 MS.gene055002:CDS 35.0%
!! CAAAGCACTGTAATGATGTA+TGG + chr7.4:36994472-36994491 None:intergenic 35.0%
!! GAGATTTTGTTTGTTGAAGG+AGG - chr7.4:36993862-36993881 MS.gene055002:intron 35.0%
!! GATTTTGTTTGTTGAAGGAG+GGG - chr7.4:36993864-36993883 MS.gene055002:intron 35.0%
!! GGAGAGATTTTGTTTGTTGA+AGG - chr7.4:36993859-36993878 MS.gene055002:intron 35.0%
AAAAGGACCATCCATGTACA+TGG - chr7.4:36994278-36994297 MS.gene055002:CDS 40.0%
AAGAAACATCTGAAGAGGGT+AGG - chr7.4:36993800-36993819 MS.gene055002:CDS 40.0%
AGTCTTGCAATAGTCCCTAA+GGG + chr7.4:36993083-36993102 None:intergenic 40.0%
GTACATGGTTACAGATGACT+TGG - chr7.4:36994293-36994312 MS.gene055002:CDS 40.0%
GTCATCTGTAACCATGTACA+TGG + chr7.4:36994292-36994311 None:intergenic 40.0%
TAAGCTTCCATAGAGCTTCT+TGG + chr7.4:36993230-36993249 None:intergenic 40.0%
TCTGTAACCATGTACATGGA+TGG + chr7.4:36994288-36994307 None:intergenic 40.0%
! AGGAATCAAAAGTGCAGTTG+TGG - chr7.4:36993359-36993378 MS.gene055002:CDS 40.0%
! AGTTTTCTAACCTTCCCCTT+GGG - chr7.4:36993910-36993929 MS.gene055002:intron 40.0%
! GAGCTCAAATTTTGCTGCAA+TGG + chr7.4:36994067-36994086 None:intergenic 40.0%
! TAGTTTTCTAACCTTCCCCT+TGG - chr7.4:36993909-36993928 MS.gene055002:intron 40.0%
! TCAAATTTTGCTGCAATGGG+AGG + chr7.4:36994063-36994082 None:intergenic 40.0%
AGCTTCTTTACCTTGCCCTT+AGG - chr7.4:36993065-36993084 MS.gene055002:intron 45.0%
CGTTCCTCTATGTGATGTAG+AGG - chr7.4:36994368-36994387 MS.gene055002:CDS 45.0%
GAGTCTTGCAATAGTCCCTA+AGG + chr7.4:36993084-36993103 None:intergenic 45.0%
GCTTCTTTACCTTGCCCTTA+GGG - chr7.4:36993066-36993085 MS.gene055002:intron 45.0%
GGTTAGAATTGGTGTGAACG+AGG - chr7.4:36994398-36994417 MS.gene055002:CDS 45.0%
TCAGGGTCTCAGCATTCTTA+TGG - chr7.4:36994506-36994525 MS.gene055002:CDS 45.0%
TCTGTATGCTGAAGCAGTGA+AGG - chr7.4:36993022-36993041 MS.gene055002:intron 45.0%
TGAAATAGCAGTGAAGGACG+AGG + chr7.4:36994331-36994350 None:intergenic 45.0%
TGTCGAAATCAGCAAGCAAG+AGG - chr7.4:36993568-36993587 MS.gene055002:CDS 45.0%
! CTTTTGGTGGGGACATTACT+AGG + chr7.4:36993397-36993416 None:intergenic 45.0%
! GAGCCCGTTTGAGCATTTTT+AGG - chr7.4:36993339-36993358 MS.gene055002:CDS 45.0%
! GGCAAGGTATCTGCAGAAAT+TGG + chr7.4:36994105-36994124 None:intergenic 45.0%
! GTTTTCTAACCTTCCCCTTG+GGG - chr7.4:36993911-36993930 MS.gene055002:intron 45.0%
! TTTTCTAACCTTCCCCTTGG+GGG - chr7.4:36993912-36993931 MS.gene055002:intron 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG - chr7.4:36993934-36993953 MS.gene055002:CDS 45.0%
ATAGCAGTGAAGGACGAGGT+TGG + chr7.4:36994327-36994346 None:intergenic 50.0%
ATATGCAACACTCCCCCCAA+GGG + chr7.4:36993928-36993947 None:intergenic 50.0%
CTGCAACAGCATTTCCTTGC+AGG + chr7.4:36993207-36993226 None:intergenic 50.0%
GTTGCAGCCAAGAAGCTCTA+TGG - chr7.4:36993220-36993239 MS.gene055002:CDS 50.0%
TACGAAGAGAGCGAATCCAC+CGG + chr7.4:36994158-36994177 None:intergenic 50.0%
TGCAATAGTCCCTAAGGGCA+AGG + chr7.4:36993078-36993097 None:intergenic 50.0%
TTTCTAACCTTCCCCTTGGG+GGG - chr7.4:36993913-36993932 MS.gene055002:intron 50.0%
ACGAAGAGAGCGAATCCACC+GGG + chr7.4:36994157-36994176 None:intergenic 55.0%
AGCACTTCGTGTGCGAGAAC+TGG - chr7.4:36993294-36993313 MS.gene055002:CDS 55.0%
CATATGCAACACTCCCCCCA+AGG + chr7.4:36993929-36993948 None:intergenic 55.0%
GCACTTCGTGTGCGAGAACT+GGG - chr7.4:36993295-36993314 MS.gene055002:CDS 55.0%
TATGCAACACTCCCCCCAAG+GGG + chr7.4:36993927-36993946 None:intergenic 55.0%
!! TCGCACACGAAGTGCTGCAA+AGG + chr7.4:36993290-36993309 None:intergenic 55.0%
CAACACTCCCCCCAAGGGGA+AGG + chr7.4:36993923-36993942 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 36992939 36994608 36992939 ID=MS.gene055002
chr7.4 mRNA 36992939 36994608 36992939 ID=MS.gene055002.t1;Parent=MS.gene055002
chr7.4 exon 36993928 36994608 36993928 ID=MS.gene055002.t1.exon1;Parent=MS.gene055002.t1
chr7.4 CDS 36993928 36994608 36993928 ID=cds.MS.gene055002.t1;Parent=MS.gene055002.t1
chr7.4 exon 36993128 36993832 36993128 ID=MS.gene055002.t1.exon2;Parent=MS.gene055002.t1
chr7.4 CDS 36993128 36993832 36993128 ID=cds.MS.gene055002.t1;Parent=MS.gene055002.t1
chr7.4 exon 36992939 36993037 36992939 ID=MS.gene055002.t1.exon3;Parent=MS.gene055002.t1
chr7.4 CDS 36992939 36993037 36992939 ID=cds.MS.gene055002.t1;Parent=MS.gene055002.t1
Gene Sequence

>MS.gene055002

ATGGCTGACGTTGCAACTGAATCTGTTGAACAAAATGACAAAATTATGTTGAGAGTTATGGTGGATAAAGAAAGTAACAAAGTTCTGTATGCTGAAGCAGTGAAGGATTTTGTTGATGTTCTCTTCAGCTTCTTTACCTTGCCCTTAGGGACTATTGCAAGACTCGTTGCTACAGACTCAAATATTGAAGCAGTTCAATTTGGCAGCATTAGCTCACTTTATCAAAGTGTAAAAGATCTTGATCAACAATATTTATGCACAAATACCTGCAAGGAAATGCTGTTGCAGCCAAGAAGCTCTATGGAAGCTTATTGTCAAAAGCTCAAACTGAATATAGACGACACAGAACCTTTGCAGCACTTCGTGTGCGAGAACTGGGATTGTGTTAGAAAGCAAACTGGAGCCCGTTTGAGCATTTTTAGGAATCAAAAGTGCAGTTGTGGAAAAGTAATGAACCTAGTAATGTCCCCACCAAAAGAATTTTTGAGTTTAGGAAATGGCTTTGCTAAGGAAACCGCCACATTTATCATTTCTGATGATCTTACTGTGATGCCTAATGTTTTTGGAACAGTTATACCACTACTTCAAAAGCATGAAATCACAAACATTGGTGCTATTGTTGAAGAATCTGTCGAAATCAGCAAGCAAGAGGCATCCTCTCTATATATAACTCTCATCTTTGTATATCATTATTTTGTTTAGTTGATTTTTTTTTTCTCATCAAATATTCATTTTTGTAGATAACTGATATTCTCAAGTTGTCATTCGTCTCAAAGACCCCTTTAACTGACTTCTTATTTAAGAAGAAACATTTCTGTGATGAATTTGTCAAGACAAACCAACCAGAGTTTAAGAATAGAGAAGAAACATCTGAAGAGGGTAGGCAGATGTCTGTGAAAGTTTTGCAAAGAAAATCAACTGGAGAGATTTTGTTTGTTGAAGGAGGGGCAGATTTTATTGACTTTATTTTTAGTTTTCTAACCTTCCCCTTGGGGGGAGTGTTGCATATGCTTCAAGGATTCTCTTCTTTAAGCTGCATTGATAATTTATATAAAAGCGTAACTGAGTTGAGTCCAGATATATATTTAATATCACAGGAACTTAAAGATAAACTAACTAAGCCTCCCATTGCAGCAAAATTTGAGCTCAGCAATCCAACTTTACCAATTTCTGCAGATACCTTGCCTGTCTATTATTATCATACTTACTATAATTCCCGGTGGATTCGCTCTCTTCGTATTACATATTATTGTTGTGGTTCTGATGATAGGTGTGTACTTTTGAATTTTGTTGATCCTAAGTATTCTGCTTCAAAATCATCTAGTTGTGGAGAATTTGCAAAAGGACCATCCATGTACATGGTTACAGATGACTTGGTTGTGACTCCAACCTCGTCCTTCACTGCTATTTCACATTTAAACAGTTTAAACGTTCCTCTATGTGATGTAGAGGAAAAAGTGGTTAGAATTGGTGTGAACGAGGTAATTCACAACTCAAGACTTTTCACGTTATCGCAATTAATTTTCATTTCCATACATCATTACAGTGCTTTGTTTGTTTACATGTTTCAGGGTCTCAGCATTCTTATGGCTTCATTGACCTCAACGTCTGCTTTAACATATGGTCTCAACCAATTCTTAACAACAACCATTAAGGGAAATGACCAATGA
Protein sequence

>MS.gene055002.t1

MADVATESVEQNDKIMLRVMVDKESNKVLYAEAVKDFVDVLFSFFTLPLGTIARLVATDSNIEAVQFGSISSLYQSVKDLDQQYLCTNTCKEMLLQPRSSMEAYCQKLKLNIDDTEPLQHFVCENWDCVRKQTGARLSIFRNQKCSCGKVMNLVMSPPKEFLSLGNGFAKETATFIISDDLTVMPNVFGTVIPLLQKHEITNIGAIVEESVEISKQEASSLYITLIFTPLTDFLFKKKHFCDEFVKTNQPEFKNREETSEEGRQMSVKVLQRKSTGEILFVEGGADFIDFIFSFLTFPLGGVLHMLQGFSSLSCIDNLYKSVTELSPDIYLISQELKDKLTKPPIAAKFELSNPTLPISADTLPVYYYHTYYNSRWIRSLRITYYCCGSDDRCVLLNFVDPKYSASKSSSCGEFAKGPSMYMVTDDLVVTPTSSFTAISHLNSLNVPLCDVEEKVVRIGVNEGLSILMASLTSTSALTYGLNQFLTTTIKGNDQ