AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45989

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45989.t1 MTR_7g066310 58.629 394 143 4 1 374 13 406 1.38e-151 434
MS.gene45989.t1 MTR_7g066580 47.955 440 133 8 1 346 1 438 2.98e-126 371
MS.gene45989.t1 MTR_7g012680 51.402 428 123 8 1 349 20 441 8.02e-125 367
MS.gene45989.t1 MTR_7g066350 71.600 250 66 2 118 363 211 459 1.70e-113 338
MS.gene45989.t1 MTR_7g066350 63.121 141 47 1 1 141 15 150 2.29e-52 181
MS.gene45989.t1 MTR_7g066340 45.098 459 167 11 1 374 18 476 6.99e-107 322
MS.gene45989.t1 MTR_7g066400 64.427 253 78 3 118 358 190 442 1.00e-106 321
MS.gene45989.t1 MTR_7g066400 61.947 113 23 3 1 110 18 113 3.29e-33 129
MS.gene45989.t1 MTR_1g041315 69.778 225 63 2 118 337 227 451 3.59e-105 318
MS.gene45989.t1 MTR_1g041315 65.254 118 40 1 1 118 20 136 1.51e-47 168
MS.gene45989.t1 MTR_2g029400 46.210 409 129 11 2 343 21 405 1.14e-103 311
MS.gene45989.t1 MTR_1g014060 47.872 376 162 10 4 349 9 380 3.89e-95 289
MS.gene45989.t1 MTR_7g066280 42.131 413 127 7 74 374 1 413 1.78e-89 275
MS.gene45989.t1 MTR_7g066260 60.159 251 82 5 112 349 213 458 3.31e-85 267
MS.gene45989.t1 MTR_7g066260 70.536 112 30 2 1 111 21 130 2.21e-44 160
MS.gene45989.t1 MTR_7g066570 54.909 275 84 6 117 353 208 480 2.44e-80 256
MS.gene45989.t1 MTR_7g066570 68.293 123 38 1 1 123 20 141 3.66e-47 169
MS.gene45989.t1 MTR_7g066680 46.644 298 94 6 118 350 38 335 4.72e-73 231
MS.gene45989.t1 MTR_7g066490 39.225 413 156 8 1 349 22 403 1.77e-72 232
MS.gene45989.t1 MTR_7g063920 34.856 416 198 7 1 349 17 426 1.38e-70 228
MS.gene45989.t1 MTR_7g063920 28.497 193 118 8 164 347 10 191 4.06e-12 67.8
MS.gene45989.t1 MTR_7g058710 46.350 274 101 7 118 350 206 474 1.46e-64 213
MS.gene45989.t1 MTR_7g058710 56.934 137 46 2 1 137 18 141 1.36e-41 152
MS.gene45989.t1 MTR_7g066360 53.112 241 94 5 118 349 215 445 2.34e-62 207
MS.gene45989.t1 MTR_7g066360 68.750 112 33 1 1 112 20 129 8.42e-44 158
MS.gene45989.t1 MTR_7g058700 49.576 236 80 4 118 353 725 921 5.71e-62 214
MS.gene45989.t1 MTR_7g058700 61.765 102 24 2 9 110 533 619 3.32e-30 122
MS.gene45989.t1 MTR_7g062300 33.187 455 195 14 1 349 18 469 1.08e-61 205
MS.gene45989.t1 MTR_7g063880 35.347 447 186 16 1 349 17 458 1.63e-61 205
MS.gene45989.t1 MTR_7g066290 55.042 238 76 5 118 350 219 430 1.73e-61 204
MS.gene45989.t1 MTR_7g066290 71.429 112 29 3 1 111 21 130 3.44e-43 155
MS.gene45989.t1 MTR_7g066430 41.392 273 119 5 118 349 209 481 7.70e-57 193
MS.gene45989.t1 MTR_7g066430 51.818 110 52 1 1 110 10 118 6.33e-31 123
MS.gene45989.t1 MTR_3g065200 32.160 426 177 11 1 340 9 408 1.03e-51 179
MS.gene45989.t1 MTR_4g017470 29.801 453 210 10 1 349 18 466 2.74e-49 173
MS.gene45989.t1 MTR_7g066410 38.267 277 127 4 118 350 233 509 3.87e-47 168
MS.gene45989.t1 MTR_7g066410 57.798 109 45 1 2 110 17 124 3.49e-35 135
MS.gene45989.t1 MTR_7g100420 33.418 392 180 13 1 352 45 395 4.11e-42 152
MS.gene45989.t1 MTR_7g066390 48.295 176 59 2 206 375 1 150 4.60e-41 142
MS.gene45989.t1 MTR_7g066480 37.500 240 106 4 118 349 214 417 4.37e-38 142
MS.gene45989.t1 MTR_7g066480 58.621 116 42 2 1 116 22 131 8.75e-32 124
MS.gene45989.t1 MTR_4g017830 34.859 284 127 7 118 349 220 497 5.81e-37 140
MS.gene45989.t1 MTR_4g017830 43.478 115 59 2 1 109 18 132 2.36e-19 89.7
MS.gene45989.t1 MTR_7g062280 32.830 265 138 4 118 349 224 481 7.26e-37 139
MS.gene45989.t1 MTR_7g062280 52.294 109 51 1 1 109 16 123 9.89e-28 114
MS.gene45989.t1 MTR_7g063720 37.321 209 115 3 158 350 15 223 8.23e-37 134
MS.gene45989.t1 MTR_7g063820 34.815 270 133 6 118 350 212 475 3.46e-36 137
MS.gene45989.t1 MTR_7g063820 54.310 116 51 2 1 116 16 129 3.50e-29 118
MS.gene45989.t1 MTR_3g007740 37.751 249 132 7 118 349 196 438 3.17e-35 134
MS.gene45989.t1 MTR_3g007740 52.041 98 35 1 1 98 15 100 5.84e-21 94.4
MS.gene45989.t1 MTR_4g019310 33.452 281 131 8 118 354 223 491 5.81e-35 134
MS.gene45989.t1 MTR_4g019310 42.400 125 55 3 1 117 14 129 1.23e-21 96.7
MS.gene45989.t1 MTR_7g063900 62.000 100 38 0 1 100 16 115 5.03e-33 129
MS.gene45989.t1 MTR_7g063900 33.813 278 129 9 118 349 210 478 7.81e-26 108
MS.gene45989.t1 MTR_7g063830 34.440 241 135 4 118 350 210 435 5.67e-33 128
MS.gene45989.t1 MTR_7g063830 50.909 110 54 0 1 110 16 125 1.99e-30 121
MS.gene45989.t1 MTR_4g019340 35.743 249 132 5 118 341 256 501 1.13e-32 128
MS.gene45989.t1 MTR_4g019340 43.333 120 57 1 1 109 44 163 9.87e-20 90.9
MS.gene45989.t1 MTR_4g019340 34.513 113 67 2 4 116 312 417 3.24e-12 68.2
MS.gene45989.t1 MTR_7g063660 54.206 107 48 1 1 107 15 120 7.92e-32 125
MS.gene45989.t1 MTR_7g063660 33.457 269 136 6 118 350 207 468 1.30e-31 125
MS.gene45989.t1 MTR_7g063890 53.448 116 49 2 1 116 33 143 5.45e-31 123
MS.gene45989.t1 MTR_7g063890 36.000 275 127 9 118 349 226 494 4.12e-24 103
MS.gene45989.t1 MTR_7g063670 34.118 255 153 6 118 361 208 458 7.26e-31 122
MS.gene45989.t1 MTR_7g063670 44.762 105 45 2 1 105 21 112 4.33e-17 82.8
MS.gene45989.t1 MTR_7g063840 31.939 263 141 6 118 349 208 463 9.65e-31 122
MS.gene45989.t1 MTR_7g063840 56.000 100 44 0 1 100 16 115 1.48e-27 113
MS.gene45989.t1 MTR_4g017610 33.712 264 134 9 118 350 223 476 1.41e-29 119
MS.gene45989.t1 MTR_4g017610 47.414 116 53 3 2 109 20 135 2.06e-22 98.6
MS.gene45989.t1 MTR_4g017550 31.228 285 131 8 118 349 197 469 2.17e-28 115
MS.gene45989.t1 MTR_4g017550 35.644 101 52 2 4 104 256 343 7.35e-11 63.9
MS.gene45989.t1 MTR_7g062270 56.000 100 44 0 1 100 16 115 3.90e-28 114
MS.gene45989.t1 MTR_4g017440 31.522 276 142 5 118 349 226 498 7.35e-28 114
MS.gene45989.t1 MTR_4g017440 44.538 119 54 3 1 107 20 138 7.45e-20 91.3
MS.gene45989.t1 MTR_7g063850 29.707 239 125 6 159 364 60 288 2.28e-25 104
MS.gene45989.t1 MTR_4g017410 31.439 264 141 8 118 349 225 480 1.01e-24 105
MS.gene45989.t1 MTR_4g017410 46.218 119 54 2 1 109 15 133 1.78e-23 102
MS.gene45989.t1 MTR_8g445860 28.261 230 120 6 158 346 6 231 1.04e-20 90.5
MS.gene45989.t1 MTR_8g445860 36.709 79 45 1 1 79 19 92 6.12e-11 62.4
MS.gene45989.t1 MTR_2g067310 66.129 62 21 0 6 67 58 119 1.80e-20 89.7
MS.gene45989.t1 MTR_0150s0010 28.444 225 119 4 163 346 8 231 2.18e-19 86.7
MS.gene45989.t1 MTR_0150s0010 39.241 79 43 1 1 79 16 89 5.62e-11 62.4
MS.gene45989.t1 MTR_1g115440 29.075 227 115 8 164 347 10 233 8.17e-19 85.1
MS.gene45989.t1 MTR_4g019240 47.126 87 38 3 2 80 20 106 3.00e-16 76.6
MS.gene45989.t1 MTR_7g063760 45.946 74 38 2 289 361 2 74 4.85e-14 67.0
MS.gene45989.t1 MTR_1g115450 37.975 79 44 1 1 79 13 86 2.01e-12 64.7
MS.gene45989.t1 MTR_1g115455 32.773 119 66 4 1 113 15 125 6.62e-12 65.1
MS.gene45989.t1 MTR_8g023240 26.415 265 156 8 118 347 223 483 7.71e-12 67.0
MS.gene45989.t1 MTR_1g115470 39.506 81 44 1 1 81 12 87 7.53e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45989.t1 AT3G09110 48.598 107 54 1 1 107 15 120 9.19e-26 106
MS.gene45989.t1 AT5G01140 29.434 265 146 7 118 350 193 448 3.40e-23 100
MS.gene45989.t1 AT3G09140 45.133 113 59 2 1 111 15 126 7.91e-23 100
MS.gene45989.t1 AT3G09140 29.151 271 144 7 118 349 228 489 4.47e-20 92.0
MS.gene45989.t1 AT3G09140 45.133 113 59 2 1 111 15 126 8.39e-23 100
MS.gene45989.t1 AT3G09140 29.151 271 144 7 118 349 256 517 4.59e-20 92.0
MS.gene45989.t1 AT5G01120 44.762 105 57 1 1 105 15 118 5.17e-22 97.8
MS.gene45989.t1 AT5G01120 28.625 269 155 8 118 349 217 485 3.19e-20 92.4
MS.gene45989.t1 AT5G43240 42.105 114 61 2 1 110 15 127 1.53e-21 96.3
MS.gene45989.t1 AT5G43240 30.292 274 145 9 118 349 220 489 4.79e-19 89.0
MS.gene45989.t1 AT5G43240 42.105 114 61 2 1 110 15 127 1.53e-21 96.3
MS.gene45989.t1 AT5G43240 30.292 274 145 9 118 349 220 489 4.79e-19 89.0
MS.gene45989.t1 AT5G43240 42.105 114 61 2 1 110 15 127 1.53e-21 96.3
MS.gene45989.t1 AT5G43240 30.292 274 145 9 118 349 220 489 4.79e-19 89.0
MS.gene45989.t1 AT3G09120 45.361 97 52 1 1 97 12 107 3.69e-20 90.5
MS.gene45989.t1 AT5G01150 45.000 100 55 0 1 100 15 114 3.98e-20 92.0
MS.gene45989.t1 AT5G01150 30.531 226 117 7 158 349 256 475 1.44e-16 81.6
MS.gene45989.t1 AT5G01130 28.287 251 146 8 118 349 205 440 4.35e-20 91.7
MS.gene45989.t1 AT5G01130 40.367 109 59 1 2 104 16 124 4.01e-18 85.9
MS.gene45989.t1 AT5G43240 30.104 289 154 10 105 349 61 345 4.56e-19 88.2
MS.gene45989.t1 AT5G37320 40.196 102 59 2 5 105 19 119 4.81e-17 82.8
MS.gene45989.t1 AT5G37320 27.138 269 137 9 121 350 228 476 1.06e-15 79.0

Find 81 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTCAGTTTCATATTT+TGG 0.076946 7.2:+44279505 None:intergenic
CCCTTTCTTCCACGTCATTA+AGG 0.156917 7.2:+44278481 None:intergenic
TGACTGACTTTATCTTTAAA+AGG 0.177394 7.2:-44279031 MS.gene45989:CDS
CTAGTAAATCCTCCTGAAAT+AGG 0.201033 7.2:+44278597 None:intergenic
CAAGAAATCTATGGGAGTTT+TGG 0.225060 7.2:-44278983 MS.gene45989:CDS
CGGCCTCAACCTTTGCATTA+TGG 0.233958 7.2:-44278269 MS.gene45989:CDS
GATCCTAAATCCCCTATTTC+AGG 0.246380 7.2:-44278609 MS.gene45989:CDS
CCTCCTGAAATAGGGGATTT+AGG 0.250440 7.2:+44278606 None:intergenic
CAAAACTCCCATAGATTTCT+TGG 0.250653 7.2:+44278984 None:intergenic
TTTCCTGGCAGTATGGAATT+AGG 0.288138 7.2:-44278689 MS.gene45989:CDS
ATTTAGACCCAAGAAATCTA+TGG 0.325037 7.2:-44278992 MS.gene45989:CDS
CCTCCTCTTTCCTGGCAGTA+TGG 0.325565 7.2:-44278696 MS.gene45989:CDS
TAGTAAATCCTCCTGAAATA+GGG 0.341655 7.2:+44278598 None:intergenic
AATATGGAAGCAGTAAAATT+TGG 0.347826 7.2:-44279639 MS.gene45989:CDS
CGTGGCTAAGGAGTCAAATA+TGG 0.360424 7.2:-44279655 MS.gene45989:CDS
CCTTTCTTCCACGTCATTAA+GGG 0.369088 7.2:+44278482 None:intergenic
TCTGCCACCATGAATGTTAC+TGG 0.369545 7.2:+44278570 None:intergenic
ACAGAAGAAGTTTGACTTCA+AGG 0.383899 7.2:+44279470 None:intergenic
GCAGTGTTACATGTGCTTCA+AGG 0.393480 7.2:-44278822 MS.gene45989:CDS
ATCTTGACCAACAATATATA+TGG 0.395510 7.2:-44279584 MS.gene45989:CDS
TAACCAGACCTCCTCTTTCC+TGG 0.395854 7.2:-44278704 MS.gene45989:CDS
AGCTTCTTAACATTGCCTTT+AGG 0.397252 7.2:-44279693 MS.gene45989:CDS
AAAGTTGTTTATGTAGAGGC+TGG 0.400881 7.2:-44279741 MS.gene45989:CDS
TCAACATATTTATAATAGAT+AGG 0.404479 7.2:+44278630 None:intergenic
GAAGTTTGACTTCAAGGGTT+CGG 0.417488 7.2:+44279476 None:intergenic
CAGAAGAAGTTTGACTTCAA+GGG 0.429394 7.2:+44279471 None:intergenic
TAAAGATAAAGTCAGTCAAA+GGG 0.446934 7.2:+44279036 None:intergenic
AGTTATGTAACGGTAATATC+TGG 0.450579 7.2:+44278664 None:intergenic
CCCTTAATGACGTGGAAGAA+AGG 0.451121 7.2:-44278482 MS.gene45989:CDS
CTGCCAGGAAAGAGGAGGTC+TGG 0.460868 7.2:+44278701 None:intergenic
AAAACTCCCATAGATTTCTT+GGG 0.461452 7.2:+44278985 None:intergenic
TCTGACAATAAACATCTATC+CGG 0.462955 7.2:+44278744 None:intergenic
GACTGACTTTATCTTTAAAA+GGG 0.464589 7.2:-44279030 MS.gene45989:CDS
CAGTGTTACATGTGCTTCAA+GGG 0.473386 7.2:-44278821 MS.gene45989:CDS
CTACTCAAGCCAAGAAACTC+GGG 0.477370 7.2:-44279540 MS.gene45989:CDS
TTAAAGATAAAGTCAGTCAA+AGG 0.488360 7.2:+44279035 None:intergenic
ACGTGGAAGAAAGGGTCATC+AGG 0.490313 7.2:-44278473 MS.gene45989:CDS
ACAACTTCGGCTTTGACAAA+CGG 0.491516 7.2:-44278289 MS.gene45989:CDS
TTCATATTTAGAAAGAATGA+AGG 0.498825 7.2:-44278508 MS.gene45989:CDS
TGTTTATGTAGAGGCTGGGA+AGG 0.499987 7.2:-44279736 MS.gene45989:CDS
TAGAGGTCCAGTAACATTCA+TGG 0.501593 7.2:-44278577 MS.gene45989:CDS
GAAGAAAGTTGTTTATGTAG+AGG 0.504265 7.2:-44279745 MS.gene45989:CDS
GAGTTATGGTGGACAAAGAA+AGG 0.506158 7.2:-44279767 None:intergenic
AGACAATCCTTCTGATGAAA+TGG 0.507091 7.2:-44278949 MS.gene45989:CDS
GCTACTCAAGCCAAGAAACT+CGG 0.517391 7.2:-44279541 MS.gene45989:CDS
AAGTTGTTTATGTAGAGGCT+GGG 0.518284 7.2:-44279740 MS.gene45989:CDS
GGTCATCAGGATTGGTCGGA+AGG 0.519466 7.2:-44278460 MS.gene45989:CDS
TTCACAACCATTTCATCAGA+AGG 0.520257 7.2:+44278942 None:intergenic
ATTCATGGTGGCAGACGACT+TGG 0.520933 7.2:-44278562 MS.gene45989:CDS
TCTGTGACCATATATATTGT+TGG 0.521715 7.2:+44279577 None:intergenic
TTTAGACCCAAGAAATCTAT+GGG 0.526049 7.2:-44278991 MS.gene45989:CDS
CCTTAATGACGTGGAAGAAA+GGG 0.526797 7.2:-44278481 MS.gene45989:CDS
GTACATGACTTGGTTGAGCC+CGG 0.531257 7.2:-44278763 MS.gene45989:CDS
GAAGAAAGGGTCATCAGGAT+TGG 0.539346 7.2:-44278468 MS.gene45989:CDS
CTTTCTTCCACGTCATTAAG+GGG 0.544228 7.2:+44278483 None:intergenic
ATTCCATACTGCCAGGAAAG+AGG 0.547224 7.2:+44278693 None:intergenic
AGCTTCATTGACGACAACTT+CGG 0.548541 7.2:-44278302 MS.gene45989:CDS
ATTTATATAAGTACATGACT+TGG 0.553155 7.2:-44278773 MS.gene45989:CDS
TATTGCACGACTCGTGGCTA+AGG 0.555083 7.2:-44279667 MS.gene45989:CDS
GTTCCTAATTCCATACTGCC+AGG 0.560436 7.2:+44278686 None:intergenic
AGTAAATCCTCCTGAAATAG+GGG 0.565277 7.2:+44278599 None:intergenic
TTACCGTTACATAACTACCT+TGG 0.569352 7.2:-44278657 MS.gene45989:CDS
GCGCCATAATGCAAAGGTTG+AGG 0.570536 7.2:+44278266 None:intergenic
AAAGGGTCATCAGGATTGGT+CGG 0.579181 7.2:-44278464 MS.gene45989:CDS
TCTTTCTAAATATGAAACAA+TGG 0.582034 7.2:+44278515 None:intergenic
AGTCGTGCAATAGTACCTAA+AGG 0.584213 7.2:+44279678 None:intergenic
AGGTACTATTGCACGACTCG+TGG 0.591324 7.2:-44279673 MS.gene45989:CDS
CTGACAATAAACATCTATCC+GGG 0.600035 7.2:+44278745 None:intergenic
CATCAGGATTGGTCGGAAGG+AGG 0.604323 7.2:-44278457 MS.gene45989:intron
ATTTCAGGAGGATTTACTAG+AGG 0.604666 7.2:-44278594 MS.gene45989:CDS
CCTAAATCCCCTATTTCAGG+AGG 0.607949 7.2:-44278606 MS.gene45989:CDS
TGAATTGCGCCATAATGCAA+AGG 0.608544 7.2:+44278260 None:intergenic
TTACCAAGGTAGTTATGTAA+CGG 0.643864 7.2:+44278654 None:intergenic
TACTCAAGCCAAGAAACTCG+GGG 0.647198 7.2:-44279539 MS.gene45989:CDS
TATAATAGATAGGATTACCA+AGG 0.651859 7.2:+44278640 None:intergenic
TTTCTTCCACGTCATTAAGG+GGG 0.652161 7.2:+44278484 None:intergenic
AAAGATAAAGTCAGTCAAAG+GGG 0.655613 7.2:+44279037 None:intergenic
CCATACTGCCAGGAAAGAGG+AGG 0.676502 7.2:+44278696 None:intergenic
ACAATGGAAATAGATGACAT+TGG 0.723202 7.2:+44278531 None:intergenic
AGGTCCAGTAACATTCATGG+TGG 0.740271 7.2:-44278574 MS.gene45989:CDS
ACTCAAGCCAAGAAACTCGG+GGG 0.752288 7.2:-44279538 MS.gene45989:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACATATTTATAATAGAT+AGG + chr7.2:44279339-44279358 None:intergenic 15.0%
!!! ATTTTGTATACTCAAATTTA+GGG + chr7.2:44278616-44278635 None:intergenic 15.0%
!! ATTTATATAAGTACATGACT+TGG - chr7.2:44279193-44279212 MS.gene45989:intron 20.0%
!! CTAAATTTGAGTATACAAAA+TGG - chr7.2:44278615-44278634 MS.gene45989:CDS 20.0%
!! TCTTTCTAAATATGAAACAA+TGG + chr7.2:44279454-44279473 None:intergenic 20.0%
!! TTCATATTTAGAAAGAATGA+AGG - chr7.2:44279458-44279477 MS.gene45989:CDS 20.0%
!!! CATTTTGTATACTCAAATTT+AGG + chr7.2:44278617-44278636 None:intergenic 20.0%
!!! TTTTGTATACTCAAATTTAG+GGG + chr7.2:44278615-44278634 None:intergenic 20.0%
! AATATGGAAGCAGTAAAATT+TGG - chr7.2:44278327-44278346 MS.gene45989:intron 25.0%
! ATCTTGACCAACAATATATA+TGG - chr7.2:44278382-44278401 MS.gene45989:intron 25.0%
! TAAAGATAAAGTCAGTCAAA+GGG + chr7.2:44278933-44278952 None:intergenic 25.0%
! TATAATAGATAGGATTACCA+AGG + chr7.2:44279329-44279348 None:intergenic 25.0%
! TTAAAGATAAAGTCAGTCAA+AGG + chr7.2:44278934-44278953 None:intergenic 25.0%
!! ATGCAAACAAATACTGTTTT+AGG + chr7.2:44279617-44279636 None:intergenic 25.0%
!! CAATGTTCAGTTTCATATTT+TGG + chr7.2:44278464-44278483 None:intergenic 25.0%
!! GACTGACTTTATCTTTAAAA+GGG - chr7.2:44278936-44278955 MS.gene45989:CDS 25.0%
!! TATTTTCAACTTTGCAATTC+TGG + chr7.2:44278527-44278546 None:intergenic 25.0%
!! TGACTGACTTTATCTTTAAA+AGG - chr7.2:44278935-44278954 MS.gene45989:CDS 25.0%
!! TGCAAACAAATACTGTTTTA+GGG + chr7.2:44279616-44279635 None:intergenic 25.0%
!!! TATACAAAATGGCTTTGTTA+AGG - chr7.2:44278626-44278645 MS.gene45989:CDS 25.0%
AAAACTCCCATAGATTTCTT+GGG + chr7.2:44278984-44279003 None:intergenic 30.0%
AAAGATAAAGTCAGTCAAAG+GGG + chr7.2:44278932-44278951 None:intergenic 30.0%
ACAATGGAAATAGATGACAT+TGG + chr7.2:44279438-44279457 None:intergenic 30.0%
AGTTATGTAACGGTAATATC+TGG + chr7.2:44279305-44279324 None:intergenic 30.0%
ATTTAGACCCAAGAAATCTA+TGG - chr7.2:44278974-44278993 MS.gene45989:CDS 30.0%
CATCAAATCTTGGTATGAAT+AGG - chr7.2:44278870-44278889 MS.gene45989:CDS 30.0%
CGCAATTCATGAATGAAAAA+AGG - chr7.2:44279720-44279739 MS.gene45989:CDS 30.0%
CTCTTTCTTGCTGATATTAA+CGG + chr7.2:44278769-44278788 None:intergenic 30.0%
GAAGAAAGTTGTTTATGTAG+AGG - chr7.2:44278221-44278240 MS.gene45989:CDS 30.0%
TAATCTCTGTCATCAAATCT+TGG - chr7.2:44278860-44278879 MS.gene45989:CDS 30.0%
TAGTAAATCCTCCTGAAATA+GGG + chr7.2:44279371-44279390 None:intergenic 30.0%
TCTGACAATAAACATCTATC+CGG + chr7.2:44279225-44279244 None:intergenic 30.0%
TCTGTGACCATATATATTGT+TGG + chr7.2:44278392-44278411 None:intergenic 30.0%
TTACCAAGGTAGTTATGTAA+CGG + chr7.2:44279315-44279334 None:intergenic 30.0%
TTATATCTCGTTCAGAAGTA+TGG - chr7.2:44278711-44278730 MS.gene45989:CDS 30.0%
TTTAGACCCAAGAAATCTAT+GGG - chr7.2:44278975-44278994 MS.gene45989:CDS 30.0%
! AAACTTGTTCCATCAACATT+CGG + chr7.2:44278693-44278712 None:intergenic 30.0%
!! GATTTTGTTTGTTGAAGCAA+AGG - chr7.2:44279074-44279093 MS.gene45989:CDS 30.0%
!! TTAAACTTCACTTTGGAGTT+TGG - chr7.2:44279544-44279563 MS.gene45989:CDS 30.0%
AAAGTTGTTTATGTAGAGGC+TGG - chr7.2:44278225-44278244 MS.gene45989:CDS 35.0%
AAGTTGTTTATGTAGAGGCT+GGG - chr7.2:44278226-44278245 MS.gene45989:CDS 35.0%
AGACAATCCTTCTGATGAAA+TGG - chr7.2:44279017-44279036 MS.gene45989:CDS 35.0%
AGCTTCTTAACATTGCCTTT+AGG - chr7.2:44278273-44278292 MS.gene45989:CDS 35.0%
AGTAAATCCTCCTGAAATAG+GGG + chr7.2:44279370-44279389 None:intergenic 35.0%
ATTTCAGGAGGATTTACTAG+AGG - chr7.2:44279372-44279391 MS.gene45989:intron 35.0%
CAAAACTCCCATAGATTTCT+TGG + chr7.2:44278985-44279004 None:intergenic 35.0%
CACTGTGTTAAACTTCACTT+TGG - chr7.2:44279537-44279556 MS.gene45989:CDS 35.0%
CGTTAATATCAGCAAGAAAG+AGG - chr7.2:44278767-44278786 MS.gene45989:CDS 35.0%
CTAGTAAATCCTCCTGAAAT+AGG + chr7.2:44279372-44279391 None:intergenic 35.0%
CTGACAATAAACATCTATCC+GGG + chr7.2:44279224-44279243 None:intergenic 35.0%
TCAAATTTAGGGGAACTTCT+CGG + chr7.2:44278605-44278624 None:intergenic 35.0%
TTACCGTTACATAACTACCT+TGG - chr7.2:44279309-44279328 MS.gene45989:intron 35.0%
TTCACAACCATTTCATCAGA+AGG + chr7.2:44279027-44279046 None:intergenic 35.0%
! ACAGAAGAAGTTTGACTTCA+AGG + chr7.2:44278499-44278518 None:intergenic 35.0%
! ATTTGTTTGCATGATGATGC+AGG - chr7.2:44279625-44279644 MS.gene45989:CDS 35.0%
! CAAGAAATCTATGGGAGTTT+TGG - chr7.2:44278983-44279002 MS.gene45989:CDS 35.0%
! CAGAAGAAGTTTGACTTCAA+GGG + chr7.2:44278498-44278517 None:intergenic 35.0%
! TTTCAAGCTTTGCTCTTTTG+TGG + chr7.2:44279757-44279776 None:intergenic 35.0%
! TTTGTTTGCATGATGATGCA+GGG - chr7.2:44279626-44279645 MS.gene45989:CDS 35.0%
!!! AATCTATGGGAGTTTTGGAT+TGG - chr7.2:44278988-44279007 MS.gene45989:CDS 35.0%
AATGTGATGCCGAATGTTGA+TGG - chr7.2:44278681-44278700 MS.gene45989:CDS 40.0%
AGCTTCATTGACGACAACTT+CGG - chr7.2:44279664-44279683 MS.gene45989:CDS 40.0%
AGTCGTGCAATAGTACCTAA+AGG + chr7.2:44278291-44278310 None:intergenic 40.0%
CAGTGTTACATGTGCTTCAA+GGG - chr7.2:44279145-44279164 MS.gene45989:intron 40.0%
CCTTAATGACGTGGAAGAAA+GGG - chr7.2:44279485-44279504 MS.gene45989:CDS 40.0%
CCTTTCTTCCACGTCATTAA+GGG + chr7.2:44279487-44279506 None:intergenic 40.0%
CTTTCTTCCACGTCATTAAG+GGG + chr7.2:44279486-44279505 None:intergenic 40.0%
GATCCTAAATCCCCTATTTC+AGG - chr7.2:44279357-44279376 MS.gene45989:intron 40.0%
TAGAGGTCCAGTAACATTCA+TGG - chr7.2:44279389-44279408 MS.gene45989:intron 40.0%
TGAATTGCGCCATAATGCAA+AGG + chr7.2:44279709-44279728 None:intergenic 40.0%
TTTCCTGGCAGTATGGAATT+AGG - chr7.2:44279277-44279296 MS.gene45989:intron 40.0%
TTTCTTCCACGTCATTAAGG+GGG + chr7.2:44279485-44279504 None:intergenic 40.0%
! ACAACTTCGGCTTTGACAAA+CGG - chr7.2:44279677-44279696 MS.gene45989:CDS 40.0%
! AGTTTTCTCACCATTCCCTT+GGG - chr7.2:44279120-44279139 MS.gene45989:intron 40.0%
! GAAGTTTGACTTCAAGGGTT+CGG + chr7.2:44278493-44278512 None:intergenic 40.0%
! TAGTTTTCTCACCATTCCCT+TGG - chr7.2:44279119-44279138 MS.gene45989:intron 40.0%
AGGTCCAGTAACATTCATGG+TGG - chr7.2:44279392-44279411 MS.gene45989:intron 45.0%
ATTCCATACTGCCAGGAAAG+AGG + chr7.2:44279276-44279295 None:intergenic 45.0%
CCCTTAATGACGTGGAAGAA+AGG - chr7.2:44279484-44279503 MS.gene45989:CDS 45.0%
CCCTTTCTTCCACGTCATTA+AGG + chr7.2:44279488-44279507 None:intergenic 45.0%
CCTAAATCCCCTATTTCAGG+AGG - chr7.2:44279360-44279379 MS.gene45989:intron 45.0%
CCTCCTGAAATAGGGGATTT+AGG + chr7.2:44279363-44279382 None:intergenic 45.0%
CGTGGCTAAGGAGTCAAATA+TGG - chr7.2:44278311-44278330 MS.gene45989:CDS 45.0%
CTACTCAAGCCAAGAAACTC+GGG - chr7.2:44278426-44278445 MS.gene45989:intron 45.0%
GAAGAAAGGGTCATCAGGAT+TGG - chr7.2:44279498-44279517 MS.gene45989:CDS 45.0%
GCAGTGTTACATGTGCTTCA+AGG - chr7.2:44279144-44279163 MS.gene45989:intron 45.0%
GCTACTCAAGCCAAGAAACT+CGG - chr7.2:44278425-44278444 MS.gene45989:intron 45.0%
GTTCCTAATTCCATACTGCC+AGG + chr7.2:44279283-44279302 None:intergenic 45.0%
TAAAAAGCCCCCGAGTTTCT+TGG + chr7.2:44278438-44278457 None:intergenic 45.0%
TACTCAAGCCAAGAAACTCG+GGG - chr7.2:44278427-44278446 MS.gene45989:intron 45.0%
TCTGCCACCATGAATGTTAC+TGG + chr7.2:44279399-44279418 None:intergenic 45.0%
TGTTTATGTAGAGGCTGGGA+AGG - chr7.2:44278230-44278249 MS.gene45989:CDS 45.0%
! AAAGGGTCATCAGGATTGGT+CGG - chr7.2:44279502-44279521 MS.gene45989:CDS 45.0%
! GTTTTCTCACCATTCCCTTG+GGG - chr7.2:44279121-44279140 MS.gene45989:intron 45.0%
! TTTTCTCACCATTCCCTTGG+GGG - chr7.2:44279122-44279141 MS.gene45989:intron 45.0%
ACATGTAACACTGCCCCCAA+GGG + chr7.2:44279138-44279157 None:intergenic 50.0%
ACGTGGAAGAAAGGGTCATC+AGG - chr7.2:44279493-44279512 MS.gene45989:CDS 50.0%
ACTCAAGCCAAGAAACTCGG+GGG - chr7.2:44278428-44278447 MS.gene45989:intron 50.0%
AGGGGAACTTCTCGGTTCAA+TGG + chr7.2:44278597-44278616 None:intergenic 50.0%
AGGTACTATTGCACGACTCG+TGG - chr7.2:44278293-44278312 MS.gene45989:CDS 50.0%
ATTCATGGTGGCAGACGACT+TGG - chr7.2:44279404-44279423 MS.gene45989:intron 50.0%
CGGCCTCAACCTTTGCATTA+TGG - chr7.2:44279697-44279716 MS.gene45989:CDS 50.0%
GCGCCATAATGCAAAGGTTG+AGG + chr7.2:44279703-44279722 None:intergenic 50.0%
TAACCAGACCTCCTCTTTCC+TGG - chr7.2:44279262-44279281 MS.gene45989:intron 50.0%
TATTGCACGACTCGTGGCTA+AGG - chr7.2:44278299-44278318 MS.gene45989:CDS 50.0%
!! GTACATGACTTGGTTGAGCC+CGG - chr7.2:44279203-44279222 MS.gene45989:intron 50.0%
CACATGTAACACTGCCCCCA+AGG + chr7.2:44279139-44279158 None:intergenic 55.0%
CCATACTGCCAGGAAAGAGG+AGG + chr7.2:44279273-44279292 None:intergenic 55.0%
CCTCCTCTTTCCTGGCAGTA+TGG - chr7.2:44279270-44279289 MS.gene45989:intron 55.0%
GAAGGTCCCCCTTAATGACG+TGG - chr7.2:44279476-44279495 MS.gene45989:CDS 55.0%
TAACACTGCCCCCAAGGGAA+TGG + chr7.2:44279133-44279152 None:intergenic 55.0%
!! CATCAGGATTGGTCGGAAGG+AGG - chr7.2:44279509-44279528 MS.gene45989:CDS 55.0%
!! GGATTGGTCGGAAGGAGGTA+AGG - chr7.2:44279514-44279533 MS.gene45989:CDS 55.0%
!! GGTCATCAGGATTGGTCGGA+AGG - chr7.2:44279506-44279525 MS.gene45989:CDS 55.0%
CTGCCAGGAAAGAGGAGGTC+TGG + chr7.2:44279268-44279287 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 44278204 44279784 44278204 ID=MS.gene45989
chr7.2 mRNA 44278204 44279784 44278204 ID=MS.gene45989.t1;Parent=MS.gene45989
chr7.2 exon 44279434 44279784 44279434 ID=MS.gene45989.t1.exon1;Parent=MS.gene45989.t1
chr7.2 CDS 44279434 44279784 44279434 ID=cds.MS.gene45989.t1;Parent=MS.gene45989.t1
chr7.2 exon 44278458 44279096 44278458 ID=MS.gene45989.t1.exon2;Parent=MS.gene45989.t1
chr7.2 CDS 44278458 44279096 44278458 ID=cds.MS.gene45989.t1;Parent=MS.gene45989.t1
chr7.2 exon 44278204 44278341 44278204 ID=MS.gene45989.t1.exon3;Parent=MS.gene45989.t1
chr7.2 CDS 44278204 44278341 44278204 ID=cds.MS.gene45989.t1;Parent=MS.gene45989.t1
Gene Sequence

>MS.gene45989

ATGGTGGACAAAGAAAGGAAGAAAGTTGTTTATGTAGAGGCTGGGAAGGATTTTGTTGATGTTCTCTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCACGACTCGTGGCTAAGGAGTCAAATATGGAAGCAGTAAAATTTGGCAGCATTAGCTCACTCTATCAAAGTGTTTCAGATCTTGACCAACAATATATATGGTCACAGACATGCAAAGAAATGCTACTCAAGCCAAGAAACTCGGGGGCTTTTTATATCCAAAATATGAAACTGAACATTGATGACACCGAACCCTTGAAGTCAAACTTCTTCTGTGAGAACCAGAATTGCAAAGTTGAAAATAAGTGCTGTGTGAGTTTCTACAGAAATCAAACATGTATTTGTCGAAAGCCATTGAACCGAGAAGTTCCCCTAAATTTGAGTATACAAAATGGCTTTGTTAAGGAAAATTTGACTTTTATTGTTTCTGACGATCTTAATGTGATGCCGAATGTTGATGGAACAAGTTTATATCTCGTTCAGAAGTATGGAATCAAAGACATTGATGCTATTGATATACAAACCGTTAATATCAGCAAGAAAGAGGCATGTTTTCTATGTTTATATGTCATCTTTTCTGTTTATAGTAACTATTTTGTTTTCTGTCATTAATTCTCTAATCTCTGTCATCAAATCTTGGTATGAATAGGTAGTAGATATTCTCAAGTTGATTTTGATATCAAAGACCCCTTTGACTGACTTTATCTTTAAAAGGGAGCAATCTGTTGTTAATTTAGACCCAAGAAATCTATGGGAGTTTTGGATTGGAGATGTAGACAATCCTTCTGATGAAATGGTTGTGAAAGTATTAAGAAGAAAATCAACTGCACAGATTTTGTTTGTTGAAGCAAAGGAAGATTTTGCTGACTTTGTCTTTAGTTTTCTCACCATTCCCTTGGGGGCAGTGTTACATGTGCTTCAAGGGTTCTCTTTTTTAAGCTGCATTGATAATTTATATAAGTACATGACTTGGTTGAGCCCGGATAGATGTTTATTGTCAGAAGAAGTCAAAGATAAACTAACCAGACCTCCTCTTTCCTGGCAGTATGGAATTAGGAACCAGATATTACCGTTACATAACTACCTTGGTAATCCTATCTATTATAAATATGTTGATCCTAAATCCCCTATTTCAGGAGGATTTACTAGAGGTCCAGTAACATTCATGGTGGCAGACGACTTGGTTGTGACACCAATGTCATCTATTTCCATTGTTTCATATTTAGAAAGAATGAAGGTCCCCCTTAATGACGTGGAAGAAAGGGTCATCAGGATTGGTCGGAAGGAGGTAAGGCACTGTGTTAAACTTCACTTTGGAGTTTGGAAACACTTACTTCATAGTTACATCTTAATATTACTTGTATACGATTCCCTAAAACAGTATTTGTTTGCATGATGATGCAGGGTCTCAGCATATTGAAAGCTTCATTGACGACAACTTCGGCTTTGACAAACGGCCTCAACCTTTGCATTATGGCGCAATTCATGAATGAAAAAAGGTCTCAGTCTAGCCACAAAAGAGCAAAGCTTGAAAGAACATAA
Protein sequence

>MS.gene45989.t1

MVDKERKKVVYVEAGKDFVDVLFSFLTLPLGTIARLVAKESNMEAVKFGSISSLYQSVSDLDQQYIWSQTCKEMLLKPRNSGAFYIQNMKLNIDDTEPLKSNFFCENQNCKVENKCCVVDILKLILISKTPLTDFIFKREQSVVNLDPRNLWEFWIGDVDNPSDEMVVKVLRRKSTAQILFVEAKEDFADFVFSFLTIPLGAVLHVLQGFSFLSCIDNLYKYMTWLSPDRCLLSEEVKDKLTRPPLSWQYGIRNQILPLHNYLGNPIYYKYVDPKSPISGGFTRGPVTFMVADDLVVTPMSSISIVSYLERMKVPLNDVEERVIRIGRKEGLSILKASLTTTSALTNGLNLCIMAQFMNEKRSQSSHKRAKLERT