AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037547

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037547.t1 MTR_4g017410 65.878 507 131 7 7 491 4 490 0.0 613
MS.gene037547.t1 MTR_4g017440 64.822 506 151 10 7 491 9 508 0.0 583
MS.gene037547.t1 MTR_4g017830 59.615 520 178 11 1 496 1 512 0.0 552
MS.gene037547.t1 MTR_4g017610 60.736 489 166 9 1 478 1 474 0.0 541
MS.gene037547.t1 MTR_4g017550 64.488 459 136 10 39 478 18 468 0.0 535
MS.gene037547.t1 MTR_4g019340 59.319 499 153 10 1 473 29 503 1.51e-178 511
MS.gene037547.t1 MTR_4g019340 28.571 245 131 7 266 478 41 273 1.53e-11 67.0
MS.gene037547.t1 MTR_4g017470 58.268 508 163 10 1 491 1 476 5.70e-177 506
MS.gene037547.t1 MTR_4g019310 39.293 509 257 13 14 491 10 497 2.13e-94 295
MS.gene037547.t1 MTR_4g019310 26.471 272 152 8 258 494 3 261 2.17e-12 69.7
MS.gene037547.t1 MTR_7g066570 37.449 494 248 17 13 478 15 475 6.23e-71 236
MS.gene037547.t1 MTR_7g058710 32.812 512 270 14 1 478 1 472 6.06e-70 231
MS.gene037547.t1 MTR_7g066430 34.990 503 269 15 13 481 5 483 3.81e-69 229
MS.gene037547.t1 MTR_7g066430 26.316 247 147 6 6 233 251 481 1.31e-11 67.0
MS.gene037547.t1 MTR_7g066350 36.552 435 231 13 13 418 10 428 4.18e-68 226
MS.gene037547.t1 MTR_7g066340 33.667 499 259 14 1 478 1 448 6.05e-68 226
MS.gene037547.t1 MTR_7g066260 34.608 497 239 17 13 478 16 457 1.10e-63 215
MS.gene037547.t1 MTR_7g066260 28.821 229 141 5 262 476 14 234 2.74e-14 75.5
MS.gene037547.t1 MTR_7g066410 33.397 521 268 16 13 478 11 507 7.57e-63 213
MS.gene037547.t1 MTR_7g063660 35.329 501 271 18 13 492 10 478 3.35e-62 211
MS.gene037547.t1 MTR_7g063660 35.345 116 59 4 258 359 4 117 7.63e-12 67.8
MS.gene037547.t1 MTR_7g063900 33.264 481 262 14 11 461 9 460 1.43e-60 206
MS.gene037547.t1 MTR_1g041315 32.383 491 242 16 13 467 15 451 6.98e-60 205
MS.gene037547.t1 MTR_7g063880 33.333 507 278 15 2 491 5 468 1.41e-59 203
MS.gene037547.t1 MTR_7g012680 33.204 515 255 17 1 492 4 452 9.30e-57 195
MS.gene037547.t1 MTR_7g066360 35.861 488 239 16 13 481 15 447 4.89e-56 194
MS.gene037547.t1 MTR_7g062280 31.262 531 284 17 2 492 3 492 3.04e-55 192
MS.gene037547.t1 MTR_7g062300 31.881 505 280 16 1 478 1 468 6.84e-55 191
MS.gene037547.t1 MTR_7g066580 32.922 486 241 16 18 471 1 433 1.51e-54 189
MS.gene037547.t1 MTR_7g063840 31.548 504 293 14 7 492 5 474 1.81e-53 187
MS.gene037547.t1 MTR_7g066400 30.675 489 271 12 1 478 1 432 7.79e-53 185
MS.gene037547.t1 MTR_7g063890 32.189 466 274 11 13 457 28 472 1.32e-52 186
MS.gene037547.t1 MTR_7g063820 33.977 518 271 22 8 492 6 485 2.65e-51 182
MS.gene037547.t1 MTR_7g066290 37.778 360 186 8 13 348 16 361 3.19e-51 180
MS.gene037547.t1 MTR_7g066310 30.947 475 215 15 13 478 8 378 4.80e-51 179
MS.gene037547.t1 MTR_7g063830 31.622 487 248 14 13 478 11 433 4.33e-49 175
MS.gene037547.t1 MTR_7g063830 25.641 234 146 7 258 476 5 225 4.52e-12 68.6
MS.gene037547.t1 MTR_7g066480 31.276 486 234 12 13 481 17 419 2.72e-47 169
MS.gene037547.t1 MTR_7g066480 27.869 244 126 11 256 476 13 229 9.85e-11 64.3
MS.gene037547.t1 MTR_7g063920 29.821 503 272 14 2 492 4 437 2.27e-46 167
MS.gene037547.t1 MTR_3g065200 30.189 477 256 13 13 477 4 415 2.71e-46 167
MS.gene037547.t1 MTR_2g029400 32.128 470 227 14 13 471 15 403 1.54e-45 164
MS.gene037547.t1 MTR_7g063670 29.941 511 272 16 5 492 11 458 2.30e-42 157
MS.gene037547.t1 MTR_7g058700 33.146 356 153 10 22 339 529 837 5.51e-41 157
MS.gene037547.t1 MTR_4g019240 61.475 122 42 3 4 125 5 121 5.10e-40 143
MS.gene037547.t1 MTR_4g019240 64.286 56 18 1 441 496 112 165 2.94e-11 62.8
MS.gene037547.t1 MTR_3g007740 28.866 485 269 16 13 478 10 437 2.03e-39 148
MS.gene037547.t1 MTR_3g007740 29.148 223 129 9 263 476 9 211 2.23e-11 66.2
MS.gene037547.t1 MTR_7g066490 27.950 483 240 13 13 481 17 405 5.76e-36 138
MS.gene037547.t1 MTR_7g066280 28.883 412 231 12 102 478 1 385 9.44e-32 126
MS.gene037547.t1 MTR_7g066680 32.222 270 144 9 214 463 37 287 1.17e-26 110
MS.gene037547.t1 MTR_1g014060 33.906 233 132 9 21 243 9 229 9.16e-24 103
MS.gene037547.t1 MTR_1g014060 31.795 195 99 4 293 478 210 379 1.04e-13 73.2
MS.gene037547.t1 MTR_7g062270 35.870 184 95 7 7 180 5 175 1.07e-21 97.4
MS.gene037547.t1 MTR_8g445860 28.862 246 120 7 263 478 13 233 2.88e-19 87.4
MS.gene037547.t1 MTR_8g445860 28.992 238 137 6 13 234 14 235 1.47e-15 76.6
MS.gene037547.t1 MTR_7g100420 31.429 280 156 10 214 478 134 392 8.18e-18 85.9
MS.gene037547.t1 MTR_7g100420 48.387 62 32 0 13 74 40 101 3.35e-12 68.6
MS.gene037547.t1 MTR_1g115440 28.279 244 134 7 13 234 12 236 1.91e-17 82.0
MS.gene037547.t1 MTR_7g063720 29.167 240 132 5 253 480 10 223 3.48e-17 81.3
MS.gene037547.t1 MTR_0150s0010 27.386 241 140 5 13 234 11 235 3.72e-15 75.5
MS.gene037547.t1 MTR_0150s0010 27.897 233 152 7 258 478 5 233 1.56e-13 70.9
MS.gene037547.t1 MTR_7g063690 28.521 284 135 9 7 290 7 222 1.61e-14 73.6
MS.gene037547.t1 MTR_1g115455 26.749 243 135 7 13 234 10 230 1.88e-14 73.2
MS.gene037547.t1 MTR_6g006800 72.340 47 12 1 1 47 1 46 5.66e-13 64.3
MS.gene037547.t1 MTR_1g115450 40.506 79 39 1 263 333 7 85 2.45e-11 62.0
MS.gene037547.t1 MTR_1g115450 33.898 118 60 3 13 129 8 108 7.80e-11 60.5
MS.gene037547.t1 MTR_8g023240 21.800 500 298 16 13 475 38 481 2.48e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037547.t1 AT5G01130 31.313 495 271 15 13 491 10 451 5.88e-55 191
MS.gene037547.t1 AT5G01120 30.754 504 284 17 12 478 9 484 1.92e-53 188
MS.gene037547.t1 AT5G43240 30.502 518 271 21 12 478 9 488 1.90e-48 174
MS.gene037547.t1 AT5G43240 30.502 518 271 21 12 478 9 488 1.90e-48 174
MS.gene037547.t1 AT5G43240 30.502 518 271 21 12 478 9 488 1.90e-48 174
MS.gene037547.t1 AT5G01140 30.830 506 262 17 15 491 12 458 3.17e-48 173
MS.gene037547.t1 AT3G09140 30.620 516 277 17 10 478 7 488 1.76e-47 172
MS.gene037547.t1 AT5G01150 30.123 488 292 12 15 478 12 474 6.86e-45 164
MS.gene037547.t1 AT3G09110 32.448 339 201 10 15 339 12 336 2.55e-43 157
MS.gene037547.t1 AT3G09140 29.044 544 277 18 10 478 7 516 2.43e-42 158
MS.gene037547.t1 AT3G09120 34.146 328 178 10 10 317 4 313 1.37e-41 151
MS.gene037547.t1 AT5G37320 29.681 502 278 19 19 485 18 479 1.07e-38 147
MS.gene037547.t1 AT5G43240 28.446 341 193 13 166 478 27 344 3.81e-22 98.2

Find 100 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCCTCATAATCCAAATTT+TGG 0.074085 4.3:-81991361 None:intergenic
AGGTGGGTTGTCTTTATTTA+TGG 0.113150 4.3:-81992400 None:intergenic
GCCTCTCACAAATACAATTT+TGG 0.193780 4.3:+81992368 MS.gene037547:CDS
AAACGGAGAGGCCCAAAATT+TGG 0.202521 4.3:+81991349 MS.gene037547:CDS
CACCAATAACAGAAATAAAA+TGG 0.256157 4.3:+81992458 MS.gene037547:CDS
ACCAGATGCATCAATGTTTC+TGG 0.258927 4.3:+81991388 MS.gene037547:CDS
AGGTTCCATTGTAAACCTTT+TGG 0.300527 4.3:+81992581 MS.gene037547:CDS
TTGATCATTGCTGTTGTTGA+TGG 0.321006 4.3:-81991057 None:intergenic
TTTAAGCTGTTGATGGAGTT+GGG 0.330345 4.3:+81991455 MS.gene037547:CDS
CTTTAAGCTGTTGATGGAGT+TGG 0.330640 4.3:+81991454 MS.gene037547:CDS
GTGAAGAGAGAAGGATTATA+TGG 0.333879 4.3:+81992924 MS.gene037547:CDS
CAGTGATTCACATGGATTCT+TGG 0.338174 4.3:-81991207 None:intergenic
CTGGTCCACTGGCACTAGTC+AGG 0.353124 4.3:-81993192 None:intergenic
ACACCTTCTTCTGACCTGTT+GGG 0.354032 4.3:-81992891 None:intergenic
GACTTACTTTAAGCTGTTGA+TGG 0.354471 4.3:+81991448 MS.gene037547:CDS
TGTTGTTGATGGTGGCTAAA+AGG 0.368114 4.3:-81991046 None:intergenic
GCAACATTTGTTTGCAGAAA+GGG 0.373252 4.3:-81991178 None:intergenic
CACCTTCTTCTGACCTGTTG+GGG 0.390319 4.3:-81992890 None:intergenic
CACACCTTCTTCTGACCTGT+TGG 0.394282 4.3:-81992892 None:intergenic
GGCCCAAAATTTGGATTATG+AGG 0.396371 4.3:+81991358 MS.gene037547:CDS
AAACATCATCGTCTGAGTTA+AGG 0.396737 4.3:-81991148 None:intergenic
TTAACTCAGACGATGATGTT+TGG 0.397225 4.3:+81991150 MS.gene037547:CDS
GGAATGTTGAGGGGTTGGTT+TGG 0.398404 4.3:-81992711 None:intergenic
AGCTTCCTTACCATGCCATT+AGG 0.400764 4.3:+81992561 MS.gene037547:CDS
GATTCCCCTCAAAATCTTAG+TGG 0.411249 4.3:+81990926 MS.gene037547:CDS
AATGGATCTCTCTTTCGCTT+TGG 0.418129 4.3:-81992774 None:intergenic
AGTGATTCACATGGATTCTT+GGG 0.421877 4.3:-81991206 None:intergenic
ACACATCTAGCAAGAGAGTT+AGG 0.425012 4.3:-81992606 None:intergenic
CATAAGGAATGTTGAGGGGT+TGG 0.425340 4.3:-81992716 None:intergenic
GGCACTTTCAAAAGGTCTCC+TGG 0.431676 4.3:-81993211 None:intergenic
AAAACCTTCATTGCGCTTGT+GGG 0.435042 4.3:+81991318 MS.gene037547:CDS
GAGAGGCTCATTAGAGGTTA+AGG 0.435850 4.3:-81992352 None:intergenic
ATTTGTGAGAGGCTCATTAG+AGG 0.437734 4.3:-81992358 None:intergenic
ACCAGAAACATTGATGCATC+TGG 0.438385 4.3:-81991389 None:intergenic
CAAAACCTTCATTGCGCTTG+TGG 0.445825 4.3:+81991317 MS.gene037547:CDS
CAAAAGGTCTCCTGGTCCAC+TGG 0.449938 4.3:-81993203 None:intergenic
GTACAAGAGTGTGGAGAACT+TGG 0.454304 4.3:+81992638 MS.gene037547:CDS
CTTGTTTAGGCACTTTCAAA+AGG 0.456406 4.3:-81993219 None:intergenic
CAAGAGAGTTAGGTCCCAAA+AGG 0.465979 4.3:-81992596 None:intergenic
AGATTCTGATCGACGTGTCT+TGG 0.469015 4.3:-81992841 None:intergenic
ACTGTTGGTGCAGATTGCTT+AGG 0.472248 4.3:-81992420 None:intergenic
AGGTTAAGGAATACTTGAGC+AGG 0.484909 4.3:-81992338 None:intergenic
CCTTCTTCTGACCTGTTGGG+GGG 0.488088 4.3:-81992888 None:intergenic
GTTTCCCACAAGCGCAATGA+AGG 0.491621 4.3:-81991322 None:intergenic
AGCAACATTTGTTTGCAGAA+AGG 0.493897 4.3:-81991179 None:intergenic
ATCATTGCTGTTGTTGATGG+TGG 0.500624 4.3:-81991054 None:intergenic
AGGTTTACAATGGAACCTAA+TGG 0.501112 4.3:-81992576 None:intergenic
GGATTTAGTAACACAGACTT+GGG 0.501573 4.3:-81992663 None:intergenic
CTGACTAGTGCCAGTGGACC+AGG 0.505141 4.3:+81993193 MS.gene037547:CDS
AACTCTCTTGCTAGATGTGT+TGG 0.507764 4.3:+81992609 MS.gene037547:CDS
GTTGGTGCAGATTGCTTAGG+TGG 0.508685 4.3:-81992417 None:intergenic
AGAGAAGGATTATATGGTGT+AGG 0.509059 4.3:+81992930 MS.gene037547:CDS
AAGTCTGTGTTACTAAATCC+TGG 0.510892 4.3:+81992666 MS.gene037547:CDS
CACACACAACATTGGCAAGC+AGG 0.511161 4.3:+81991508 MS.gene037547:CDS
CAAAACTGTGGTGCTATACC+AGG 0.511808 4.3:-81992684 None:intergenic
ACCTTCTTCTGACCTGTTGG+GGG 0.519536 4.3:-81992889 None:intergenic
AGACGCAAATAAACTGAAAG+TGG 0.521334 4.3:-81992972 None:intergenic
TCTTGACGATCTTGAAGTGA+AGG 0.522916 4.3:+81993022 MS.gene037547:CDS
TTATTTCTGTTATTGGTGCA+AGG 0.532286 4.3:-81992453 None:intergenic
CTTCTTCTGACCTGTTGGGG+GGG 0.534388 4.3:-81992887 None:intergenic
AGGATTTAGTAACACAGACT+TGG 0.536535 4.3:-81992664 None:intergenic
CTTCAAGATCGTCAAGAGGA+AGG 0.538256 4.3:-81993016 None:intergenic
CAACATTTGTTTGCAGAAAG+GGG 0.540436 4.3:-81991177 None:intergenic
GCCAAAATTGTATTTGTGAG+AGG 0.542965 4.3:-81992369 None:intergenic
TTAAGCTGTTGATGGAGTTG+GGG 0.553198 4.3:+81991456 MS.gene037547:CDS
TGGTTGCAAGTGGAAGAGAT+AGG 0.556941 4.3:-81991016 None:intergenic
GAAGTGAAGGAAATAAGCAT+TGG 0.567701 4.3:+81993035 MS.gene037547:CDS
GAAGTCAACAAAATCTCCGT+TGG 0.575489 4.3:-81992532 None:intergenic
TGGAACCTAATGGCATGGTA+AGG 0.579585 4.3:-81992566 None:intergenic
TTGGTGCAGATTGCTTAGGT+GGG 0.579593 4.3:-81992416 None:intergenic
TACAATGGAACCTAATGGCA+TGG 0.581094 4.3:-81992571 None:intergenic
AGGTCCCAAAAGGTTTACAA+TGG 0.585270 4.3:-81992586 None:intergenic
AGGTCAGAAGAAGGTGTGGT+GGG 0.585287 4.3:+81992897 MS.gene037547:CDS
GGTGTTCGCAGAAGCAAACA+AGG 0.590592 4.3:+81990968 MS.gene037547:CDS
TGGTCCACTGGCACTAGTCA+GGG 0.594688 4.3:-81993191 None:intergenic
GCCCAAAATTTGGATTATGA+GGG 0.595994 4.3:+81991359 MS.gene037547:CDS
TTCACTTCAAGATCGTCAAG+AGG 0.596428 4.3:-81993020 None:intergenic
CAGGTCAGAAGAAGGTGTGG+TGG 0.596620 4.3:+81992896 MS.gene037547:CDS
GCTTGTGGGAAACCAACAAA+CGG 0.604091 4.3:+81991332 MS.gene037547:CDS
AATAAGCATTGGTGAAGCTG+AGG 0.609065 4.3:+81993046 MS.gene037547:CDS
GTGGGATTTGTGAAGAGAGA+AGG 0.609295 4.3:+81992915 MS.gene037547:CDS
CAAGGCAATACTCTAACTGT+TGG 0.616222 4.3:-81992435 None:intergenic
GAGGAAGTCACACACAACAT+TGG 0.621785 4.3:+81991500 MS.gene037547:CDS
AGGCGAGCAATGGTTGCAAG+TGG 0.626437 4.3:-81991026 None:intergenic
ATGATATTCACAGAAGCCAA+CGG 0.635551 4.3:+81992516 MS.gene037547:CDS
TTCAGACTTGACTCAACTAG+AGG 0.639443 4.3:+81991481 MS.gene037547:CDS
TTTACATAAGGAATGTTGAG+GGG 0.645423 4.3:-81992720 None:intergenic
CAACAGGTCAGAAGAAGGTG+TGG 0.646980 4.3:+81992893 MS.gene037547:CDS
TTGATGTCAAGAATGCTCGA+AGG 0.662606 4.3:-81993162 None:intergenic
TGGTAACTTGTACAAGAGTG+TGG 0.668210 4.3:+81992629 MS.gene037547:CDS
GGACAAACAAAGCAACAAAG+TGG 0.672252 4.3:+81990947 MS.gene037547:CDS
GGTGGCTAAAAGGCGAGCAA+TGG 0.674121 4.3:-81991036 None:intergenic
ACACAACATTGGCAAGCAGG+AGG 0.678135 4.3:+81991511 MS.gene037547:CDS
TTTACCCTGACTAGTGCCAG+TGG 0.682350 4.3:+81993187 MS.gene037547:CDS
CAGCTTAAAGTAAGTCACAG+AGG 0.704820 4.3:-81991441 None:intergenic
TTTATGCACAGTGATTCACA+TGG 0.706252 4.3:-81991215 None:intergenic
TGGGAAACCAACAAACGGAG+AGG 0.713749 4.3:+81991337 MS.gene037547:CDS
TGGTTTGGACAACAAAACTG+TGG 0.726414 4.3:-81992696 None:intergenic
GATTTAGTAACACAGACTTG+GGG 0.736630 4.3:-81992662 None:intergenic
TATAATAGAAGAATTCACTG+AGG 0.766608 4.3:+81992806 MS.gene037547:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATATTCACAATCTT+AGG + chr4.3:81991910-81991929 MS.gene037547:intron 15.0%
!! TATTATTCTGTTACAAAAAA+AGG - chr4.3:81992066-81992085 None:intergenic 15.0%
!! TCTATTATATGAAAAATGAA+TGG - chr4.3:81992795-81992814 None:intergenic 15.0%
!!! ATTTAAGATCTATTGAATTT+TGG - chr4.3:81991861-81991880 None:intergenic 15.0%
!!! TTTAAGATCTATTGAATTTT+GGG - chr4.3:81991860-81991879 None:intergenic 15.0%
!!! TTTTAGCATAATAATAAGTA+GGG - chr4.3:81992749-81992768 None:intergenic 15.0%
!! CAAACAAAAAACTTATTTGA+TGG - chr4.3:81991269-81991288 None:intergenic 20.0%
!! CCTCAAAATTTATTATATTG+TGG + chr4.3:81991753-81991772 MS.gene037547:intron 20.0%
!! TCAATATCTATACATCAAAA+AGG - chr4.3:81992317-81992336 None:intergenic 20.0%
!! TTGATTGAAAGAAATATAGA+TGG - chr4.3:81992230-81992249 None:intergenic 20.0%
!!! AATTTTGAATGTTGTTGTTT+TGG - chr4.3:81990906-81990925 None:intergenic 20.0%
!!! ATCCATTTTATTTCTGTTAT+TGG - chr4.3:81992463-81992482 None:intergenic 20.0%
!!! CCACAATATAATAAATTTTG+AGG - chr4.3:81991756-81991775 None:intergenic 20.0%
!!! CTTTTAGCATAATAATAAGT+AGG - chr4.3:81992750-81992769 None:intergenic 20.0%
!!! GTAAAATTTTGTTCTTGTTT+AGG - chr4.3:81993235-81993254 None:intergenic 20.0%
!!! TCTATATTTTACCACAATAA+AGG - chr4.3:81991692-81991711 None:intergenic 20.0%
!!! TTAAGATCTATTGAATTTTG+GGG - chr4.3:81991859-81991878 None:intergenic 20.0%
! ATAAAGAACAATGTAATGAG+AGG - chr4.3:81991592-81991611 None:intergenic 25.0%
! ATTTCTTCTAACATGTCTTA+AGG - chr4.3:81992094-81992113 None:intergenic 25.0%
! CACCAATAACAGAAATAAAA+TGG + chr4.3:81992458-81992477 MS.gene037547:CDS 25.0%
! TAAAGAACAATGTAATGAGA+GGG - chr4.3:81991591-81991610 None:intergenic 25.0%
! TATAATAGAAGAATTCACTG+AGG + chr4.3:81992806-81992825 MS.gene037547:CDS 25.0%
! TTAGAGAAGTTATTAGTTAG+AGG + chr4.3:81992030-81992049 MS.gene037547:intron 25.0%
! TTGAAAGAACTTGAAATCTT+TGG + chr4.3:81992152-81992171 MS.gene037547:intron 25.0%
! TTTCTTCTAACATGTCTTAA+GGG - chr4.3:81992093-81992112 None:intergenic 25.0%
!! AATTTCGAATTTGAAACACA+AGG + chr4.3:81991878-81991897 MS.gene037547:intron 25.0%
!! AGGAAATTATCAATTGCTTT+TGG - chr4.3:81992297-81992316 None:intergenic 25.0%
!! TATTTTACCACAATAAAGGT+AGG - chr4.3:81991688-81991707 None:intergenic 25.0%
!! TGTTCTTTATTTACTTGCAT+AGG + chr4.3:81991602-81991621 MS.gene037547:intron 25.0%
!! TTTTACATAAGGAATGTTGA+GGG - chr4.3:81992724-81992743 None:intergenic 25.0%
!!! TCAATCAATTTTTCAATCCT+TGG + chr4.3:81992242-81992261 MS.gene037547:intron 25.0%
!!! TTAGTATGTCTTCTTGTTTT+AGG - chr4.3:81991994-81992013 None:intergenic 25.0%
AAAGAACTTGAAATCTTTGG+AGG + chr4.3:81992155-81992174 MS.gene037547:intron 30.0%
AACCAAAAATTAAAACCACG+AGG - chr4.3:81991659-81991678 None:intergenic 30.0%
AGTAGTACTATGTTTCCTAA+AGG - chr4.3:81991801-81991820 None:intergenic 30.0%
ATTTATTATATTGTGGCTGC+AGG + chr4.3:81991760-81991779 MS.gene037547:intron 30.0%
GTAGTACTATGTTTCCTAAA+GGG - chr4.3:81991800-81991819 None:intergenic 30.0%
TTAGGAAACATAGTACTACT+AGG + chr4.3:81991801-81991820 MS.gene037547:intron 30.0%
TTTACATAAGGAATGTTGAG+GGG - chr4.3:81992723-81992742 None:intergenic 30.0%
! ACCCTCATAATCCAAATTTT+GGG - chr4.3:81991363-81991382 None:intergenic 30.0%
! GTTTTACATAAGGAATGTTG+AGG - chr4.3:81992725-81992744 None:intergenic 30.0%
! TTTGTCCACTAAGATTTTGA+GGG - chr4.3:81990934-81990953 None:intergenic 30.0%
!! CTTTTGATGTTTTCAAGGAA+TGG - chr4.3:81991107-81991126 None:intergenic 30.0%
!! TAAGTAGGGTGTTTTACATA+AGG - chr4.3:81992735-81992754 None:intergenic 30.0%
!! TTATTTCTGTTATTGGTGCA+AGG - chr4.3:81992456-81992475 None:intergenic 30.0%
AAACATCATCGTCTGAGTTA+AGG - chr4.3:81991151-81991170 None:intergenic 35.0%
AACAATGTAATGAGAGGGTA+TGG - chr4.3:81991586-81991605 None:intergenic 35.0%
ACAACATTAAGAGTTAGCCA+AGG - chr4.3:81992262-81992281 None:intergenic 35.0%
AGACGCAAATAAACTGAAAG+TGG - chr4.3:81992975-81992994 None:intergenic 35.0%
AGAGAAGGATTATATGGTGT+AGG + chr4.3:81992930-81992949 MS.gene037547:CDS 35.0%
AGCAACATTTGTTTGCAGAA+AGG - chr4.3:81991182-81991201 None:intergenic 35.0%
AGGATTTAGTAACACAGACT+TGG - chr4.3:81992667-81992686 None:intergenic 35.0%
AGGTTTACAATGGAACCTAA+TGG - chr4.3:81992579-81992598 None:intergenic 35.0%
AGTGATTCACATGGATTCTT+GGG - chr4.3:81991209-81991228 None:intergenic 35.0%
ATGATATTCACAGAAGCCAA+CGG + chr4.3:81992516-81992535 MS.gene037547:CDS 35.0%
ATTTGACGTTGTGTATCAGT+TGG + chr4.3:81991824-81991843 MS.gene037547:intron 35.0%
CAAAAATTAAAACCACGAGG+TGG - chr4.3:81991656-81991675 None:intergenic 35.0%
CAACATTTGTTTGCAGAAAG+GGG - chr4.3:81991180-81991199 None:intergenic 35.0%
CTTGTTTAGGCACTTTCAAA+AGG - chr4.3:81993222-81993241 None:intergenic 35.0%
GAAGTGAAGGAAATAAGCAT+TGG + chr4.3:81993035-81993054 MS.gene037547:CDS 35.0%
GACTTACTTTAAGCTGTTGA+TGG + chr4.3:81991448-81991467 MS.gene037547:CDS 35.0%
GAGAAGTTATTAGTTAGAGG+AGG + chr4.3:81992033-81992052 MS.gene037547:intron 35.0%
GATTTAGTAACACAGACTTG+GGG - chr4.3:81992665-81992684 None:intergenic 35.0%
GCAACATTTGTTTGCAGAAA+GGG - chr4.3:81991181-81991200 None:intergenic 35.0%
GCCAAAATTGTATTTGTGAG+AGG - chr4.3:81992372-81992391 None:intergenic 35.0%
GCCCAAAATTTGGATTATGA+GGG + chr4.3:81991359-81991378 MS.gene037547:CDS 35.0%
GGATTTAGTAACACAGACTT+GGG - chr4.3:81992666-81992685 None:intergenic 35.0%
GTGAAGAGAGAAGGATTATA+TGG + chr4.3:81992924-81992943 MS.gene037547:CDS 35.0%
TTAACTCAGACGATGATGTT+TGG + chr4.3:81991150-81991169 MS.gene037547:CDS 35.0%
TTTATGCACAGTGATTCACA+TGG - chr4.3:81991218-81991237 None:intergenic 35.0%
! AAGTCTGTGTTACTAAATCC+TGG + chr4.3:81992666-81992685 MS.gene037547:CDS 35.0%
! ACAATGTAATGAGAGGGTAT+GGG - chr4.3:81991585-81991604 None:intergenic 35.0%
! AGAGGCTTTTGATGTTTTCA+AGG - chr4.3:81991112-81991131 None:intergenic 35.0%
! AGGTTCCATTGTAAACCTTT+TGG + chr4.3:81992581-81992600 MS.gene037547:CDS 35.0%
! AGTTAAGGTTTTCGACAGTT+TGG - chr4.3:81991136-81991155 None:intergenic 35.0%
! GACCCTCATAATCCAAATTT+TGG - chr4.3:81991364-81991383 None:intergenic 35.0%
! GCCTCTCACAAATACAATTT+TGG + chr4.3:81992368-81992387 MS.gene037547:CDS 35.0%
! GGTTCCATTGTAAACCTTTT+GGG + chr4.3:81992582-81992601 MS.gene037547:CDS 35.0%
! GTTTGTCCACTAAGATTTTG+AGG - chr4.3:81990935-81990954 None:intergenic 35.0%
! TTGATCATTGCTGTTGTTGA+TGG - chr4.3:81991060-81991079 None:intergenic 35.0%
! TTGTCCACTAAGATTTTGAG+GGG - chr4.3:81990933-81990952 None:intergenic 35.0%
! TTTAAGCTGTTGATGGAGTT+GGG + chr4.3:81991455-81991474 MS.gene037547:CDS 35.0%
! TTTTCTGCCTACCTTTATTG+TGG + chr4.3:81991678-81991697 MS.gene037547:intron 35.0%
!! AGGTGGGTTGTCTTTATTTA+TGG - chr4.3:81992403-81992422 None:intergenic 35.0%
!!! CACCTCGTGGTTTTAATTTT+TGG + chr4.3:81991654-81991673 MS.gene037547:intron 35.0%
AAAACCTTCATTGCGCTTGT+GGG + chr4.3:81991318-81991337 MS.gene037547:CDS 40.0%
AAATTAAAACCACGAGGTGG+AGG - chr4.3:81991653-81991672 None:intergenic 40.0%
AACTCTCTTGCTAGATGTGT+TGG + chr4.3:81992609-81992628 MS.gene037547:CDS 40.0%
AATGGATCTCTCTTTCGCTT+TGG - chr4.3:81992777-81992796 None:intergenic 40.0%
ACACATCTAGCAAGAGAGTT+AGG - chr4.3:81992609-81992628 None:intergenic 40.0%
ACCAGAAACATTGATGCATC+TGG - chr4.3:81991392-81991411 None:intergenic 40.0%
ACCAGATGCATCAATGTTTC+TGG + chr4.3:81991388-81991407 MS.gene037547:CDS 40.0%
AGGTCCCAAAAGGTTTACAA+TGG - chr4.3:81992589-81992608 None:intergenic 40.0%
AGGTTAAGGAATACTTGAGC+AGG - chr4.3:81992341-81992360 None:intergenic 40.0%
ATTTGTGAGAGGCTCATTAG+AGG - chr4.3:81992361-81992380 None:intergenic 40.0%
CAAGGCAATACTCTAACTGT+TGG - chr4.3:81992438-81992457 None:intergenic 40.0%
CAGCTTAAAGTAAGTCACAG+AGG - chr4.3:81991444-81991463 None:intergenic 40.0%
CAGGAGGTAATGATATTGTG+TGG + chr4.3:81991527-81991546 MS.gene037547:intron 40.0%
CAGTGATTCACATGGATTCT+TGG - chr4.3:81991210-81991229 None:intergenic 40.0%
CTACATCATAACCGAAGTTG+TGG - chr4.3:81991724-81991743 None:intergenic 40.0%
CTTCGGTTATGATGTAGTTG+TGG + chr4.3:81991727-81991746 MS.gene037547:intron 40.0%
GAAGTCAACAAAATCTCCGT+TGG - chr4.3:81992535-81992554 None:intergenic 40.0%
GATTCCCCTCAAAATCTTAG+TGG + chr4.3:81990926-81990945 MS.gene037547:CDS 40.0%
GGACAAACAAAGCAACAAAG+TGG + chr4.3:81990947-81990966 MS.gene037547:CDS 40.0%
GGCCCAAAATTTGGATTATG+AGG + chr4.3:81991358-81991377 MS.gene037547:CDS 40.0%
TACAATGGAACCTAATGGCA+TGG - chr4.3:81992574-81992593 None:intergenic 40.0%
TCTTGACGATCTTGAAGTGA+AGG + chr4.3:81993022-81993041 MS.gene037547:CDS 40.0%
TGGAGGCTAATGATTACGAT+TGG - chr4.3:81991636-81991655 None:intergenic 40.0%
TTCACTTCAAGATCGTCAAG+AGG - chr4.3:81993023-81993042 None:intergenic 40.0%
TTCAGACTTGACTCAACTAG+AGG + chr4.3:81991481-81991500 MS.gene037547:CDS 40.0%
TTGATGTCAAGAATGCTCGA+AGG - chr4.3:81993165-81993184 None:intergenic 40.0%
! ATCATTGCTGTTGTTGATGG+TGG - chr4.3:81991057-81991076 None:intergenic 40.0%
! CTTTAAGCTGTTGATGGAGT+TGG + chr4.3:81991454-81991473 MS.gene037547:CDS 40.0%
! GTTGTGTATCAGTTGGTGTT+AGG + chr4.3:81991831-81991850 MS.gene037547:intron 40.0%
! TGGTAACTTGTACAAGAGTG+TGG + chr4.3:81992629-81992648 MS.gene037547:CDS 40.0%
! TGGTTTGGACAACAAAACTG+TGG - chr4.3:81992699-81992718 None:intergenic 40.0%
! TTAAGCTGTTGATGGAGTTG+GGG + chr4.3:81991456-81991475 MS.gene037547:CDS 40.0%
!! AATAAGCATTGGTGAAGCTG+AGG + chr4.3:81993046-81993065 MS.gene037547:CDS 40.0%
!! TGTTGTTGATGGTGGCTAAA+AGG - chr4.3:81991049-81991068 None:intergenic 40.0%
AAACGGAGAGGCCCAAAATT+TGG + chr4.3:81991349-81991368 MS.gene037547:CDS 45.0%
ACACCTTCTTCTGACCTGTT+GGG - chr4.3:81992894-81992913 None:intergenic 45.0%
ACTGTTGGTGCAGATTGCTT+AGG - chr4.3:81992423-81992442 None:intergenic 45.0%
AGATTCTGATCGACGTGTCT+TGG - chr4.3:81992844-81992863 None:intergenic 45.0%
AGCTTCCTTACCATGCCATT+AGG + chr4.3:81992561-81992580 MS.gene037547:CDS 45.0%
CAAAACCTTCATTGCGCTTG+TGG + chr4.3:81991317-81991336 MS.gene037547:CDS 45.0%
CAAGAGAGTTAGGTCCCAAA+AGG - chr4.3:81992599-81992618 None:intergenic 45.0%
CATAAGGAATGTTGAGGGGT+TGG - chr4.3:81992719-81992738 None:intergenic 45.0%
CATCATAACCGAAGTTGTGG+CGG - chr4.3:81991721-81991740 None:intergenic 45.0%
CTTCAAGATCGTCAAGAGGA+AGG - chr4.3:81993019-81993038 None:intergenic 45.0%
GAGAGGCTCATTAGAGGTTA+AGG - chr4.3:81992355-81992374 None:intergenic 45.0%
GAGGAAGTCACACACAACAT+TGG + chr4.3:81991500-81991519 MS.gene037547:CDS 45.0%
GATAAATGCCGCCACAACTT+CGG + chr4.3:81991710-81991729 MS.gene037547:intron 45.0%
GCTTGTGGGAAACCAACAAA+CGG + chr4.3:81991332-81991351 MS.gene037547:CDS 45.0%
GTGGGATTTGTGAAGAGAGA+AGG + chr4.3:81992915-81992934 MS.gene037547:CDS 45.0%
TGGAACCTAATGGCATGGTA+AGG - chr4.3:81992569-81992588 None:intergenic 45.0%
TGGTTGCAAGTGGAAGAGAT+AGG - chr4.3:81991019-81991038 None:intergenic 45.0%
TTATATTGTGGCTGCAGGTG+TGG + chr4.3:81991765-81991784 MS.gene037547:intron 45.0%
TTCCTCTTGACTTCTGATGC+AGG + chr4.3:81993129-81993148 MS.gene037547:intron 45.0%
TTGGTGCAGATTGCTTAGGT+GGG - chr4.3:81992419-81992438 None:intergenic 45.0%
! GGTTTTCGACAGTTTGGTAG+AGG - chr4.3:81991130-81991149 None:intergenic 45.0%
! GTACAAGAGTGTGGAGAACT+TGG + chr4.3:81992638-81992657 MS.gene037547:CDS 45.0%
!! CAAAACTGTGGTGCTATACC+AGG - chr4.3:81992687-81992706 None:intergenic 45.0%
ACACAACATTGGCAAGCAGG+AGG + chr4.3:81991511-81991530 MS.gene037547:CDS 50.0%
ACCTTCTTCTGACCTGTTGG+GGG - chr4.3:81992892-81992911 None:intergenic 50.0%
AGCCTGCATCAGAAGTCAAG+AGG - chr4.3:81993134-81993153 None:intergenic 50.0%
CAACAGGTCAGAAGAAGGTG+TGG + chr4.3:81992893-81992912 MS.gene037547:CDS 50.0%
CACACACAACATTGGCAAGC+AGG + chr4.3:81991508-81991527 MS.gene037547:CDS 50.0%
CACACCTTCTTCTGACCTGT+TGG - chr4.3:81992895-81992914 None:intergenic 50.0%
CACCTTCTTCTGACCTGTTG+GGG - chr4.3:81992893-81992912 None:intergenic 50.0%
GGCACTTTCAAAAGGTCTCC+TGG - chr4.3:81993214-81993233 None:intergenic 50.0%
GGTGTTCGCAGAAGCAAACA+AGG + chr4.3:81990968-81990987 MS.gene037547:CDS 50.0%
GTTGGTGCAGATTGCTTAGG+TGG - chr4.3:81992420-81992439 None:intergenic 50.0%
GTTTCCCACAAGCGCAATGA+AGG - chr4.3:81991325-81991344 None:intergenic 50.0%
TGGGAAACCAACAAACGGAG+AGG + chr4.3:81991337-81991356 MS.gene037547:CDS 50.0%
TGTGGCACGGTTTACCCTTT+AGG + chr4.3:81991783-81991802 MS.gene037547:intron 50.0%
TTTACCCTGACTAGTGCCAG+TGG + chr4.3:81993187-81993206 MS.gene037547:CDS 50.0%
! AATCATTAGCCTCCACCTCG+TGG + chr4.3:81991641-81991660 MS.gene037547:intron 50.0%
! AGGTCAGAAGAAGGTGTGGT+GGG + chr4.3:81992897-81992916 MS.gene037547:CDS 50.0%
! GCATTGGTGAAGCTGAGGTA+AGG + chr4.3:81993051-81993070 MS.gene037547:intron 50.0%
! TTTTGGGCCTCTCCGTTTGT+TGG - chr4.3:81991347-81991366 None:intergenic 50.0%
!! GGAATGTTGAGGGGTTGGTT+TGG - chr4.3:81992714-81992733 None:intergenic 50.0%
AGGCGAGCAATGGTTGCAAG+TGG - chr4.3:81991029-81991048 None:intergenic 55.0%
CAAAAGGTCTCCTGGTCCAC+TGG - chr4.3:81993206-81993225 None:intergenic 55.0%
CCTTCTTCTGACCTGTTGGG+GGG - chr4.3:81992891-81992910 None:intergenic 55.0%
CTTCTTCTGACCTGTTGGGG+GGG - chr4.3:81992890-81992909 None:intergenic 55.0%
GGTGGCTAAAAGGCGAGCAA+TGG - chr4.3:81991039-81991058 None:intergenic 55.0%
TGGTCCACTGGCACTAGTCA+GGG - chr4.3:81993194-81993213 None:intergenic 55.0%
! CAGGTCAGAAGAAGGTGTGG+TGG + chr4.3:81992896-81992915 MS.gene037547:CDS 55.0%
CCCCCCAACAGGTCAGAAGA+AGG + chr4.3:81992888-81992907 MS.gene037547:CDS 60.0%
CTGACTAGTGCCAGTGGACC+AGG + chr4.3:81993193-81993212 MS.gene037547:CDS 60.0%
CTGGTCCACTGGCACTAGTC+AGG - chr4.3:81993195-81993214 None:intergenic 60.0%
TTGTGGCTGCAGGTGTGGCA+CGG + chr4.3:81991770-81991789 MS.gene037547:intron 60.0%
CTGCACTCGACCCCCCCAAC+AGG + chr4.3:81992877-81992896 MS.gene037547:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 81990891 81993261 81990891 ID=MS.gene037547
chr4.3 mRNA 81990891 81993261 81990891 ID=MS.gene037547.t1;Parent=MS.gene037547
chr4.3 exon 81990891 81991532 81990891 ID=MS.gene037547.t1.exon1;Parent=MS.gene037547.t1
chr4.3 CDS 81990891 81991532 81990891 ID=cds.MS.gene037547.t1;Parent=MS.gene037547.t1
chr4.3 exon 81992330 81993067 81992330 ID=MS.gene037547.t1.exon2;Parent=MS.gene037547.t1
chr4.3 CDS 81992330 81993067 81992330 ID=cds.MS.gene037547.t1;Parent=MS.gene037547.t1
chr4.3 exon 81993151 81993261 81993151 ID=MS.gene037547.t1.exon3;Parent=MS.gene037547.t1
chr4.3 CDS 81993151 81993261 81993151 ID=cds.MS.gene037547.t1;Parent=MS.gene037547.t1
Gene Sequence

>MS.gene037547

ATGACTTCTCAACCAAAACAACAACATTCAAAATTGATTCCCCTCAAAATCTTAGTGGACAAACAAAGCAACAAAGTGGTGTTCGCAGAAGCAAACAAGGATTTCGTTGACACTCTCTTCAGCTTCCTATCTCTTCCACTTGCAACCATTGCTCGCCTTTTAGCCACCATCAACAACAGCAATGATCAACAAAAACAACTCTCAGAATCATCACCATTCCTTGAAAACATCAAAAGCCTCTACCAAACTGTCGAAAACCTTAACTCAGACGATGATGTTTGGAACACCCCTTTCTGCAAACAAATGTTGCTGCATCCCAAGAATCCATGTGAATCACTGTGCATAAAGCTATTCTTGAATATTGATGACACTGAACCATCAAATAAGTTTTTTGTTTGTGATTCTTGTAACAAGTTCACTACTTTTCAAAACCTTCATTGCGCTTGTGGGAAACCAACAAACGGAGAGGCCCAAAATTTGGATTATGAGGGTCACAAACCAGATGCATCAATGTTTCTGGTATCTGATGACTTGAAGATTGTGCGATTTTCCTCTGTGACTTACTTTAAGCTGTTGATGGAGTTGGGGTATTCAGACTTGACTCAACTAGAGGAAGTCACACACAACATTGGCAAGCAGGAGGTAATGATATTGTGTGGTTTTTTGTTTGATATGTATCTATCTCACAATTCCCATACCCTCTCATTACATTGTTCTTTATTTACTTGCATAGGATCTTAGACCAATCGTAATCATTAGCCTCCACCTCGTGGTTTTAATTTTTGGTTTTTCTGCCTACCTTTATTGTGGTAAAATATAGATAAATGCCGCCACAACTTCGGTTATGATGTAGTTGTGGCGACCTCAAAATTTATTATATTGTGGCTGCAGGTGTGGCACGGTTTACCCTTTAGGAAACATAGTACTACTAGGATTTGACGTTGTGTATCAGTTGGTGTTAGGAACCCCAAAATTCAATAGATCTTAAATTTCGAATTTGAAACACAAGGAGTTTGACAAATTTAATATTCACAATCTTAGGATTTAATATTTGACAAGCAAAACAGAATATTAATAAAAAAAGAGTACGAGTACTTCAACCTAAAACAAGAAGACATACTAAGAGAAGAAAAGTACAGTTAGAGAAGTTATTAGTTAGAGGAGGATAATATCCTTTTTTTGTAACAGAATAATAATTTCCCTTAAGACATGTTAGAAGAAATAGCACACATGTTGTACATTTTACGAGCTTTCACATGAATTGAAAGAACTTGAAATCTTTGGAGGATTTATCACTTCTATTCTCATTATTTCATGCAGTAAAATTTCTCTTCTTCCATCTATATTTCTTTCAATCAATTTTTCAATCCTTGGCTAACTCTTAATGTTGTGATTTATTACTGCCAAAAGCAATTGATAATTTCCTTTTTGATGTATAGATATTGAACCTGCTCAAGTATTCCTTAACCTCTAATGAGCCTCTCACAAATACAATTTTGGCATGTAGCTCCATAAATAAAGACAACCCACCTAAGCAATCTGCACCAACAGTTAGAGTATTGCCTTGCACCAATAACAGAAATAAAATGGATGTTAAGATTGTGCAGAGTAAATCTCTGAAAAAAATGATATTCACAGAAGCCAACGGAGATTTTGTTGACTTCATTTTTAGCTTCCTTACCATGCCATTAGGTTCCATTGTAAACCTTTTGGGACCTAACTCTCTTGCTAGATGTGTTGGTAACTTGTACAAGAGTGTGGAGAACTTGGACCCCAAGTCTGTGTTACTAAATCCTGGTATAGCACCACAGTTTTGTTGTCCAAACCAACCCCTCAACATTCCTTATGTAAAACACCCTACTTATTATTATGCTAAAAGAATACCAAAGCGAAAGAGAGATCCATTCATTTTTCATATAATAGAAGAATTCACTGAGGAAAGAGTGATTTCCAAGACACGTCGATCAGAATCTTATTCATTCTTGACTGCACTCGACCCCCCCAACAGGTCAGAAGAAGGTGTGGTGGGATTTGTGAAGAGAGAAGGATTATATGGTGTAGGAGATGATCTGAGAGTAAAACCACTTTCAGTTTATTTGCGTCTTTCATATTTGAAAGAGTTAAGCCTTCCTCTTGACGATCTTGAAGTGAAGGAAATAAGCATTGGTGAAGCTGAGGTAAGGTCGTTATTATTTATCTCTGAATTTATAATTATTTTCTATTTTTTAACATCTTCGATTCCTCTTGACTTCTGATGCAGGCTTTGAACTTCCTTCGAGCATTCTTGACATCAAAATTTACCCTGACTAGTGCCAGTGGACCAGGAGACCTTTTGAAAGTGCCTAAACAAGAACAAAATTTTACTAACTAG
Protein sequence

>MS.gene037547.t1

MTSQPKQQHSKLIPLKILVDKQSNKVVFAEANKDFVDTLFSFLSLPLATIARLLATINNSNDQQKQLSESSPFLENIKSLYQTVENLNSDDDVWNTPFCKQMLLHPKNPCESLCIKLFLNIDDTEPSNKFFVCDSCNKFTTFQNLHCACGKPTNGEAQNLDYEGHKPDASMFLVSDDLKIVRFSSVTYFKLLMELGYSDLTQLEEVTHNIGKQEILNLLKYSLTSNEPLTNTILACSSINKDNPPKQSAPTVRVLPCTNNRNKMDVKIVQSKSLKKMIFTEANGDFVDFIFSFLTMPLGSIVNLLGPNSLARCVGNLYKSVENLDPKSVLLNPGIAPQFCCPNQPLNIPYVKHPTYYYAKRIPKRKRDPFIFHIIEEFTEERVISKTRRSESYSFLTALDPPNRSEEGVVGFVKREGLYGVGDDLRVKPLSVYLRLSYLKELSLPLDDLEVKEISIGEAEALNFLRAFLTSKFTLTSASGPGDLLKVPKQEQNFTN