AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96582

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96582.t1 MTR_7g058710 70.264 454 67 5 1 398 1 442 0.0 605
MS.gene96582.t1 MTR_7g066570 52.018 446 157 8 4 398 6 445 1.09e-137 405
MS.gene96582.t1 MTR_7g012680 50.580 431 159 7 1 398 1 410 2.63e-133 390
MS.gene96582.t1 MTR_7g066580 51.095 411 170 5 18 398 1 410 2.58e-129 379
MS.gene96582.t1 MTR_7g058700 52.620 439 61 7 24 398 531 886 2.20e-127 389
MS.gene96582.t1 MTR_2g029400 52.463 406 155 7 2 398 4 380 8.78e-124 364
MS.gene96582.t1 MTR_7g066260 46.930 456 155 12 1 398 1 427 4.74e-117 350
MS.gene96582.t1 MTR_7g066350 45.740 446 151 10 8 398 5 414 2.47e-113 339
MS.gene96582.t1 MTR_1g041315 43.696 460 163 10 3 398 5 432 9.98e-109 328
MS.gene96582.t1 MTR_7g066340 44.150 453 163 8 1 398 1 418 1.74e-108 327
MS.gene96582.t1 MTR_7g066310 46.096 397 159 10 7 398 2 348 1.24e-97 297
MS.gene96582.t1 MTR_7g066290 44.493 454 140 11 1 398 1 398 2.89e-97 297
MS.gene96582.t1 MTR_7g066430 39.778 450 205 10 12 398 4 450 2.59e-94 291
MS.gene96582.t1 MTR_1g014060 43.122 378 178 9 21 398 9 349 9.97e-91 279
MS.gene96582.t1 MTR_7g066680 62.605 238 81 4 167 398 37 272 6.64e-88 270
MS.gene96582.t1 MTR_7g066400 38.375 443 187 9 1 398 1 402 8.30e-87 271
MS.gene96582.t1 MTR_7g066360 41.778 450 170 11 2 398 4 414 6.46e-86 269
MS.gene96582.t1 MTR_7g063900 36.364 451 217 12 1 390 1 442 7.90e-75 241
MS.gene96582.t1 MTR_7g063900 25.490 204 124 7 205 394 3 192 3.63e-11 65.1
MS.gene96582.t1 MTR_7g062280 34.136 457 231 11 4 398 2 450 8.21e-68 223
MS.gene96582.t1 MTR_7g063660 35.080 439 213 13 7 389 4 426 4.96e-67 220
MS.gene96582.t1 MTR_7g062300 33.258 445 232 12 1 391 1 434 4.07e-66 218
MS.gene96582.t1 MTR_7g063820 34.272 426 226 9 4 379 2 423 4.90e-65 215
MS.gene96582.t1 MTR_7g063890 36.117 443 220 12 6 390 21 458 6.02e-65 216
MS.gene96582.t1 MTR_7g063890 28.293 205 116 9 205 394 20 208 6.40e-13 70.5
MS.gene96582.t1 MTR_7g063830 33.408 449 239 12 4 397 2 445 1.08e-64 213
MS.gene96582.t1 MTR_7g063840 33.409 443 239 11 1 398 1 432 1.32e-64 214
MS.gene96582.t1 MTR_7g063920 36.070 402 225 9 3 389 2 386 4.91e-64 211
MS.gene96582.t1 MTR_7g063880 34.624 439 213 12 3 389 2 418 1.67e-60 203
MS.gene96582.t1 MTR_7g066480 38.551 345 152 7 5 297 9 345 2.20e-60 201
MS.gene96582.t1 MTR_7g066490 40.323 310 140 6 12 282 16 319 4.23e-60 200
MS.gene96582.t1 MTR_4g019310 31.522 460 241 11 6 398 2 454 1.84e-58 198
MS.gene96582.t1 MTR_3g065200 34.977 426 205 14 10 398 1 391 3.52e-57 194
MS.gene96582.t1 MTR_4g017830 30.801 487 227 18 1 398 1 466 2.07e-51 180
MS.gene96582.t1 MTR_7g066410 54.545 154 67 2 13 164 11 163 2.53e-51 180
MS.gene96582.t1 MTR_7g066410 36.287 237 135 6 168 389 233 468 2.58e-32 128
MS.gene96582.t1 MTR_4g017440 31.556 450 231 16 13 390 15 459 5.21e-49 173
MS.gene96582.t1 MTR_4g019340 29.571 443 236 11 13 390 39 470 1.03e-46 167
MS.gene96582.t1 MTR_4g019340 34.615 104 61 2 12 115 303 399 1.03e-11 66.6
MS.gene96582.t1 MTR_7g063670 30.963 436 205 10 13 391 16 412 2.62e-46 165
MS.gene96582.t1 MTR_4g017610 30.269 446 232 14 15 398 16 444 4.81e-46 165
MS.gene96582.t1 MTR_4g017470 29.730 444 257 12 1 398 1 435 6.10e-46 165
MS.gene96582.t1 MTR_4g017410 29.668 482 222 17 1 398 1 449 7.99e-46 165
MS.gene96582.t1 MTR_3g007740 36.137 321 156 6 11 289 8 321 1.24e-42 155
MS.gene96582.t1 MTR_7g066280 32.609 368 175 10 91 398 1 355 1.55e-41 151
MS.gene96582.t1 MTR_7g062270 51.327 113 55 0 13 125 11 123 3.01e-32 125
MS.gene96582.t1 MTR_4g017550 28.302 424 218 14 41 390 20 431 1.64e-30 122
MS.gene96582.t1 MTR_4g017550 36.538 104 53 2 12 115 247 337 8.70e-12 67.0
MS.gene96582.t1 MTR_7g063720 32.240 183 103 3 212 391 23 187 6.11e-25 102
MS.gene96582.t1 MTR_7g063720 29.231 130 73 4 12 129 23 145 7.70e-12 65.1
MS.gene96582.t1 MTR_2g067310 49.057 106 44 3 23 127 58 154 6.18e-22 94.4
MS.gene96582.t1 MTR_7g063690 33.191 235 124 9 13 239 13 222 6.12e-20 88.6
MS.gene96582.t1 MTR_4g019240 40.909 110 55 4 13 114 14 121 2.45e-17 79.7
MS.gene96582.t1 MTR_8g023240 27.063 303 172 7 13 273 38 333 2.95e-17 84.0
MS.gene96582.t1 MTR_0150s0010 42.268 97 49 2 1 97 1 90 5.17e-16 77.4
MS.gene96582.t1 MTR_0150s0010 29.121 182 111 5 225 394 23 198 3.00e-11 63.5
MS.gene96582.t1 MTR_1g115450 39.326 89 49 1 9 97 4 87 9.05e-16 74.3
MS.gene96582.t1 MTR_1g115455 40.206 97 50 2 1 97 1 89 2.77e-15 75.1
MS.gene96582.t1 MTR_1g115440 40.860 93 50 1 3 95 2 89 3.69e-15 75.1
MS.gene96582.t1 MTR_1g115440 26.601 203 135 6 202 394 1 199 1.08e-12 67.8
MS.gene96582.t1 MTR_8g445860 34.146 123 73 2 4 123 5 122 6.27e-15 74.3
MS.gene96582.t1 MTR_0150s0030 37.363 91 51 2 6 95 2 87 3.88e-14 71.2
MS.gene96582.t1 MTR_7g100420 30.508 236 153 7 167 398 134 362 7.06e-14 73.2
MS.gene96582.t1 MTR_7g100420 59.322 59 20 1 13 67 40 98 6.63e-13 70.1
MS.gene96582.t1 MTR_7g063850 28.889 180 119 3 212 389 66 238 1.13e-13 71.6
MS.gene96582.t1 MTR_8g445920 37.363 91 52 1 4 94 2 87 1.70e-13 67.0
MS.gene96582.t1 MTR_8g044890 37.363 91 52 1 4 94 2 87 1.70e-13 67.0
MS.gene96582.t1 MTR_8g445910 37.634 93 52 2 6 97 2 89 2.96e-13 69.7
MS.gene96582.t1 MTR_8g044880 37.634 93 52 2 6 97 2 89 3.26e-13 70.1
MS.gene96582.t1 MTR_1g115470 39.773 88 48 1 12 99 6 88 1.24e-12 69.3
MS.gene96582.t1 MTR_7g063870 52.727 55 26 0 6 60 25 79 7.87e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96582.t1 AT5G01150 27.045 440 248 10 12 390 9 436 1.25e-37 142
MS.gene96582.t1 AT5G01130 27.727 440 226 10 12 398 9 409 8.46e-34 131
MS.gene96582.t1 AT3G09110 47.788 113 59 0 12 124 9 121 2.08e-29 117
MS.gene96582.t1 AT5G01140 25.229 436 249 11 12 398 9 416 5.80e-28 115
MS.gene96582.t1 AT3G09120 45.045 111 60 1 11 121 5 114 1.23e-27 111
MS.gene96582.t1 AT3G09140 44.355 124 66 1 1 124 1 121 5.15e-27 112
MS.gene96582.t1 AT3G09140 44.800 125 64 3 1 124 1 121 6.00e-27 112
MS.gene96582.t1 AT5G37320 26.709 468 240 18 6 398 5 444 1.86e-26 110
MS.gene96582.t1 AT5G43240 38.356 146 73 2 13 145 10 151 2.72e-26 110
MS.gene96582.t1 AT5G43240 38.356 146 73 2 13 145 10 151 2.72e-26 110
MS.gene96582.t1 AT5G43240 38.356 146 73 2 13 145 10 151 2.72e-26 110
MS.gene96582.t1 AT5G01120 44.954 109 60 0 13 121 10 118 7.23e-26 109
MS.gene96582.t1 AT5G01120 30.837 227 140 6 176 390 225 446 2.18e-14 75.1

Find 76 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCCAATTGGAATTATT+TGG 0.146766 7.3:+46009595 None:intergenic
ATTCCTGAACTCAAACTTTC+TGG 0.148406 7.3:+46010270 None:intergenic
CCTCCCATTGCTGCACAATT+TGG 0.190873 7.3:-46009627 MS.gene96582:CDS
AAAGTCTGTACTTCTAAATT+TGG 0.207777 7.3:-46009481 MS.gene96582:CDS
AACATTGAAGCTGTGAAATT+TGG 0.238206 7.3:-46010571 MS.gene96582:CDS
CTCCCATTGCTGCACAATTT+GGG 0.242831 7.3:-46009626 MS.gene96582:CDS
AGCACTTCGTCTGTGGGAAT+TGG 0.291346 7.3:-46010396 MS.gene96582:CDS
ATCTATTCGTACATTAATAT+TGG 0.327952 7.3:-46009561 MS.gene96582:CDS
GTTACTCATAACGATCATTA+AGG 0.357405 7.3:-46009318 None:intergenic
ATCTTGATGAACAATATCTA+TGG 0.360687 7.3:-46010516 MS.gene96582:CDS
CAAAGTTACATTGAGAGTTA+TGG 0.373530 7.3:-46010713 MS.gene96582:CDS
GCACTTCGTCTGTGGGAATT+GGG 0.386412 7.3:-46010395 MS.gene96582:CDS
CCACAGACGAAGTGCTGAAT+AGG 0.390073 7.3:+46010403 None:intergenic
GGTGAGGAAGCTACTCCAAT+TGG 0.395198 7.3:+46009585 None:intergenic
AGCTTCTTAACATTGCCTTT+AGG 0.397252 7.3:-46010625 MS.gene96582:CDS
AAACTTTCTGGTTGTGGCGG+TGG 0.423859 7.3:+46010282 None:intergenic
AATGTTCCAATATGTAAGAT+TGG 0.430435 7.3:-46009912 MS.gene96582:CDS
GACAACCAAATAATTCCAAT+TGG 0.437125 7.3:-46009600 MS.gene96582:CDS
GATTCCTAAATAAGCTCAAA+AGG 0.437888 7.3:+46010347 None:intergenic
AGATATCTGCCTACCTCCTT+CGG 0.449903 7.3:+46009878 None:intergenic
AGATATTCCGAAGTTGTCAT+TGG 0.453759 7.3:-46009991 MS.gene96582:CDS
TAAAGATGAAATCTGTCAAA+GGG 0.454540 7.3:+46009958 None:intergenic
AAAGTTTGAGTTCAGGAATC+GGG 0.459359 7.3:-46010266 MS.gene96582:intron
CAACCAGAAAGTTTGAGTTC+AGG 0.460621 7.3:-46010273 MS.gene96582:CDS
CATATGCAACACTCCTCCTA+AGG 0.473041 7.3:+46009761 None:intergenic
GAAAGTTTGAGTTCAGGAAT+CGG 0.473467 7.3:-46010267 MS.gene96582:CDS
AGACGTGGAGAATTTGCAAA+AGG 0.475748 7.3:-46009426 MS.gene96582:CDS
GAACTCAAACTTTCTGGTTG+TGG 0.478625 7.3:+46010276 None:intergenic
AGCCCAAATTGTGCAGCAAT+GGG 0.485579 7.3:+46009624 None:intergenic
ATATTAATGTACGAATAGAT+AGG 0.490863 7.3:+46009564 None:intergenic
AAGCCCAAATTGTGCAGCAA+TGG 0.495203 7.3:+46009623 None:intergenic
GGAGTGTTGCATATGCTTGA+AGG 0.498562 7.3:-46009753 MS.gene96582:CDS
AGCTTCAATGTTCGACTCCT+CGG 0.505824 7.3:+46010582 None:intergenic
GTAGCGAGAAGAAAATCAAC+CGG 0.509793 7.3:-46009849 MS.gene96582:CDS
CTTCTGACAATAAGCTTCCA+TGG 0.512147 7.3:+46010453 None:intergenic
GTGTTTGAAGAAGATAGCTT+AGG 0.514147 7.3:+46009453 None:intergenic
GGAATCAAGTTGTGCAGTTG+TGG 0.517059 7.3:-46010330 MS.gene96582:CDS
GTGGCGGTGGAGATAATACT+TGG 0.526149 7.3:+46010295 None:intergenic
TTTCTAACTCTCCCCTTAGG+AGG 0.527656 7.3:-46009774 MS.gene96582:CDS
GAGTTATGGTGGACAAAGAA+AGG 0.528542 7.3:-46010699 MS.gene96582:CDS
CCTATTCAGCACTTCGTCTG+TGG 0.530948 7.3:-46010403 MS.gene96582:CDS
ATACATGTTGACAGTTGACT+TGG 0.535675 7.3:-46009394 MS.gene96582:CDS
TTCAGCAAACAAAATCTCTC+CGG 0.536072 7.3:+46009830 None:intergenic
TAAGCTTCCATGGAACTCCT+TGG 0.538314 7.3:+46010463 None:intergenic
GTAAAGATGAAATCTGTCAA+AGG 0.542801 7.3:+46009957 None:intergenic
TTTGTATGCTGAGGCAGGGA+AGG 0.547892 7.3:-46010668 MS.gene96582:CDS
AGTCTTGCAATAGTACCTAA+AGG 0.548353 7.3:+46010610 None:intergenic
ATATGCAACACTCCTCCTAA+GGG 0.551461 7.3:+46009762 None:intergenic
GACGTGGAGAATTTGCAAAA+GGG 0.558749 7.3:-46009425 MS.gene96582:CDS
GAATTGGGATTGTGTAAGAA+AGG 0.559576 7.3:-46010380 MS.gene96582:CDS
TAAATGTGATATAGCAGTGA+AGG 0.570250 7.3:+46009353 None:intergenic
CTCAAACTTTCTGGTTGTGG+CGG 0.571537 7.3:+46010279 None:intergenic
AAGTTAATAAAATCATCTCC+TGG 0.574688 7.3:+46009807 None:intergenic
GATTGTGTAAGAAAGGAAAG+TGG 0.574963 7.3:-46010373 MS.gene96582:CDS
CTATTCAGCACTTCGTCTGT+GGG 0.575094 7.3:-46010402 MS.gene96582:CDS
ACTCAAGCCAAGGAGTTCCA+TGG 0.587991 7.3:-46010470 MS.gene96582:CDS
TTTGAGACCAATGACAACTT+CGG 0.589540 7.3:+46009984 None:intergenic
CCAAATTGTGCAGCAATGGG+AGG 0.591776 7.3:+46009627 None:intergenic
ATTGTGTAAGAAAGGAAAGT+GGG 0.596290 7.3:-46010372 MS.gene96582:CDS
TATTGCAAGACTAGTGGCCG+AGG 0.599051 7.3:-46010599 MS.gene96582:CDS
CAAATTGTGCAGCAATGGGA+GGG 0.599723 7.3:+46009628 None:intergenic
TTTCGAGATTAAATAACTGT+CGG 0.602240 7.3:+46009674 None:intergenic
TCTATGGACTCATACTTGCA+AGG 0.605084 7.3:-46010500 MS.gene96582:CDS
AGTTACATTGAGAGTTATGG+TGG 0.605938 7.3:-46010710 MS.gene96582:CDS
AGGTACTATTGCAAGACTAG+TGG 0.614356 7.3:-46010605 MS.gene96582:CDS
AGGAAATGCTACTCAAGCCA+AGG 0.617693 7.3:-46010480 MS.gene96582:CDS
ACTGTCAACATGTATACTGA+TGG 0.619928 7.3:+46009402 None:intergenic
AAGCAACATCCGAAGGAGGT+AGG 0.627417 7.3:-46009887 MS.gene96582:CDS
TAGCTCACTGTATCAGAGTG+TGG 0.646397 7.3:-46010542 MS.gene96582:CDS
GGAAAAGCAACATCCGAAGG+AGG 0.655356 7.3:-46009891 MS.gene96582:CDS
ATTGGAAAAGCAACATCCGA+AGG 0.656213 7.3:-46009894 MS.gene96582:CDS
ATAGCAGTGAAGGATGACAC+TGG 0.669959 7.3:+46009363 None:intergenic
AATGTACGAATAGATAGGTG+AGG 0.670088 7.3:+46009569 None:intergenic
AAAGATGAAATCTGTCAAAG+GGG 0.682644 7.3:+46009959 None:intergenic
TATGCAACACTCCTCCTAAG+GGG 0.688986 7.3:+46009763 None:intergenic
TCTTCAAACACATCAAGACG+TGG 0.715291 7.3:-46009441 MS.gene96582:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTATTACTTTTAC+AGG - chr7.3:46010047-46010066 MS.gene96582:intron 10.0%
!! ATATTAATGTACGAATAGAT+AGG + chr7.3:46010504-46010523 None:intergenic 20.0%
!! ATCTATTCGTACATTAATAT+TGG - chr7.3:46010504-46010523 MS.gene96582:CDS 20.0%
!!! AGGAAAATATATTTTCTTAG+TGG + chr7.3:46009994-46010013 None:intergenic 20.0%
! AAAGTCTGTACTTCTAAATT+TGG - chr7.3:46010584-46010603 MS.gene96582:CDS 25.0%
! AAGTTAATAAAATCATCTCC+TGG + chr7.3:46010261-46010280 None:intergenic 25.0%
! AATGTTCCAATATGTAAGAT+TGG - chr7.3:46010153-46010172 MS.gene96582:intron 25.0%
! AGTGGTTTATATCTATTATC+TGG + chr7.3:46009976-46009995 None:intergenic 25.0%
! ATCTTGATGAACAATATCTA+TGG - chr7.3:46009549-46009568 MS.gene96582:CDS 25.0%
! TAAAGATGAAATCTGTCAAA+GGG + chr7.3:46010110-46010129 None:intergenic 25.0%
! TTTCGAGATTAAATAACTGT+CGG + chr7.3:46010394-46010413 None:intergenic 25.0%
AAAGATGAAATCTGTCAAAG+GGG + chr7.3:46010109-46010128 None:intergenic 30.0%
AACATTGAAGCTGTGAAATT+TGG - chr7.3:46009494-46009513 MS.gene96582:CDS 30.0%
AGTCAATTGCATAAGACAAA+AGG + chr7.3:46010014-46010033 None:intergenic 30.0%
ATAACTGTTCCATAAACAGT+AGG + chr7.3:46009876-46009895 None:intergenic 30.0%
ATTGTGTAAGAAAGGAAAGT+GGG - chr7.3:46009693-46009712 MS.gene96582:CDS 30.0%
CAAAGTTACATTGAGAGTTA+TGG - chr7.3:46009352-46009371 MS.gene96582:CDS 30.0%
CTACTCCAATTGGAATTATT+TGG + chr7.3:46010473-46010492 None:intergenic 30.0%
GACAACCAAATAATTCCAAT+TGG - chr7.3:46010465-46010484 MS.gene96582:CDS 30.0%
GATTCCTAAATAAGCTCAAA+AGG + chr7.3:46009721-46009740 None:intergenic 30.0%
GTAAAGATGAAATCTGTCAA+AGG + chr7.3:46010111-46010130 None:intergenic 30.0%
TAAATGTGATATAGCAGTGA+AGG + chr7.3:46010715-46010734 None:intergenic 30.0%
! GCTTTTCCAATCTTACATAT+TGG + chr7.3:46010162-46010181 None:intergenic 30.0%
AATGTACGAATAGATAGGTG+AGG + chr7.3:46010499-46010518 None:intergenic 35.0%
ACTGTCAACATGTATACTGA+TGG + chr7.3:46010666-46010685 None:intergenic 35.0%
AGATATTCCGAAGTTGTCAT+TGG - chr7.3:46010074-46010093 MS.gene96582:intron 35.0%
AGCTTCTTAACATTGCCTTT+AGG - chr7.3:46009440-46009459 MS.gene96582:CDS 35.0%
AGTCTTGCAATAGTACCTAA+AGG + chr7.3:46009458-46009477 None:intergenic 35.0%
AGTTACATTGAGAGTTATGG+TGG - chr7.3:46009355-46009374 MS.gene96582:CDS 35.0%
ATACATGTTGACAGTTGACT+TGG - chr7.3:46010671-46010690 MS.gene96582:CDS 35.0%
ATTCCTGAACTCAAACTTTC+TGG + chr7.3:46009798-46009817 None:intergenic 35.0%
CAGTTATACAACTACTTCAC+AGG - chr7.3:46009889-46009908 MS.gene96582:CDS 35.0%
GAATTGGGATTGTGTAAGAA+AGG - chr7.3:46009685-46009704 MS.gene96582:CDS 35.0%
GATTGTGTAAGAAAGGAAAG+TGG - chr7.3:46009692-46009711 MS.gene96582:CDS 35.0%
GTGTTTGAAGAAGATAGCTT+AGG + chr7.3:46010615-46010634 None:intergenic 35.0%
TATGTGATGCCTACTGTTTA+TGG - chr7.3:46009864-46009883 MS.gene96582:CDS 35.0%
TGTTGATATCAGCAAGATAG+AGG - chr7.3:46009950-46009969 MS.gene96582:CDS 35.0%
TTCAGCAAACAAAATCTCTC+CGG + chr7.3:46010238-46010257 None:intergenic 35.0%
! AAAGTTTGAGTTCAGGAATC+GGG - chr7.3:46009799-46009818 MS.gene96582:CDS 35.0%
! GAAAGTTTGAGTTCAGGAAT+CGG - chr7.3:46009798-46009817 MS.gene96582:CDS 35.0%
! GGAACCTTTTGAGCTTATTT+AGG - chr7.3:46009714-46009733 MS.gene96582:CDS 35.0%
! TTTGAGACCAATGACAACTT+CGG + chr7.3:46010084-46010103 None:intergenic 35.0%
!! GAACAAAGTTTTGTATGCTG+AGG - chr7.3:46009388-46009407 MS.gene96582:CDS 35.0%
AGACGTGGAGAATTTGCAAA+AGG - chr7.3:46010639-46010658 MS.gene96582:CDS 40.0%
AGGTACTATTGCAAGACTAG+TGG - chr7.3:46009460-46009479 MS.gene96582:CDS 40.0%
ATATGCAACACTCCTCCTAA+GGG + chr7.3:46010306-46010325 None:intergenic 40.0%
ATTGGAAAAGCAACATCCGA+AGG - chr7.3:46010171-46010190 MS.gene96582:intron 40.0%
CTTCTGACAATAAGCTTCCA+TGG + chr7.3:46009615-46009634 None:intergenic 40.0%
GACGTGGAGAATTTGCAAAA+GGG - chr7.3:46010640-46010659 MS.gene96582:CDS 40.0%
GTAGCGAGAAGAAAATCAAC+CGG - chr7.3:46010216-46010235 MS.gene96582:intron 40.0%
TCTATGGACTCATACTTGCA+AGG - chr7.3:46009565-46009584 MS.gene96582:CDS 40.0%
TCTTCAAACACATCAAGACG+TGG - chr7.3:46010624-46010643 MS.gene96582:CDS 40.0%
! AGTTTTCTAACTCTCCCCTT+AGG - chr7.3:46010288-46010307 MS.gene96582:CDS 40.0%
! CAACCAGAAAGTTTGAGTTC+AGG - chr7.3:46009792-46009811 MS.gene96582:CDS 40.0%
!! AAAGTTTTGTATGCTGAGGC+AGG - chr7.3:46009392-46009411 MS.gene96582:CDS 40.0%
!! AAGTTTTGTATGCTGAGGCA+GGG - chr7.3:46009393-46009412 MS.gene96582:CDS 40.0%
!! AGAAGTACAGACTTTTCAGC+AGG + chr7.3:46010579-46010598 None:intergenic 40.0%
!! GAACTCAAACTTTCTGGTTG+TGG + chr7.3:46009792-46009811 None:intergenic 40.0%
!! GAGATTTTGTTTGCTGAACC+AGG - chr7.3:46010240-46010259 MS.gene96582:intron 40.0%
!! GAGTTATGGTGGACAAAGAA+AGG - chr7.3:46009366-46009385 MS.gene96582:CDS 40.0%
!! TTCAGGAATCGGGTTTGTTA+AGG - chr7.3:46009809-46009828 MS.gene96582:CDS 40.0%
AAGCCCAAATTGTGCAGCAA+TGG + chr7.3:46010445-46010464 None:intergenic 45.0%
AGATATCTGCCTACCTCCTT+CGG + chr7.3:46010190-46010209 None:intergenic 45.0%
AGCCCAAATTGTGCAGCAAT+GGG + chr7.3:46010444-46010463 None:intergenic 45.0%
AGCTTCAATGTTCGACTCCT+CGG + chr7.3:46009486-46009505 None:intergenic 45.0%
AGGAAATGCTACTCAAGCCA+AGG - chr7.3:46009585-46009604 MS.gene96582:CDS 45.0%
AGGCTTGATATCTGTGACGT+TGG - chr7.3:46009909-46009928 MS.gene96582:CDS 45.0%
ATAGCAGTGAAGGATGACAC+TGG + chr7.3:46010705-46010724 None:intergenic 45.0%
CAAATTGTGCAGCAATGGGA+GGG + chr7.3:46010440-46010459 None:intergenic 45.0%
CATATGCAACACTCCTCCTA+AGG + chr7.3:46010307-46010326 None:intergenic 45.0%
CTATTCAGCACTTCGTCTGT+GGG - chr7.3:46009663-46009682 MS.gene96582:CDS 45.0%
CTCCCATTGCTGCACAATTT+GGG - chr7.3:46010439-46010458 MS.gene96582:CDS 45.0%
TAAGCTTCCATGGAACTCCT+TGG + chr7.3:46009605-46009624 None:intergenic 45.0%
TAGCTCACTGTATCAGAGTG+TGG - chr7.3:46009523-46009542 MS.gene96582:CDS 45.0%
TATGCAACACTCCTCCTAAG+GGG + chr7.3:46010305-46010324 None:intergenic 45.0%
TTTCTAACTCTCCCCTTAGG+AGG - chr7.3:46010291-46010310 MS.gene96582:CDS 45.0%
! GGAATCAAGTTGTGCAGTTG+TGG - chr7.3:46009735-46009754 MS.gene96582:CDS 45.0%
!! CTCAAACTTTCTGGTTGTGG+CGG + chr7.3:46009789-46009808 None:intergenic 45.0%
!! GGAGTGTTGCATATGCTTGA+AGG - chr7.3:46010312-46010331 MS.gene96582:CDS 45.0%
AAGCAACATCCGAAGGAGGT+AGG - chr7.3:46010178-46010197 MS.gene96582:intron 50.0%
ACTCAAGCCAAGGAGTTCCA+TGG - chr7.3:46009595-46009614 MS.gene96582:CDS 50.0%
AGCACTTCGTCTGTGGGAAT+TGG - chr7.3:46009669-46009688 MS.gene96582:CDS 50.0%
CCAAATTGTGCAGCAATGGG+AGG + chr7.3:46010441-46010460 None:intergenic 50.0%
CCTATTCAGCACTTCGTCTG+TGG - chr7.3:46009662-46009681 MS.gene96582:CDS 50.0%
CCTCCCATTGCTGCACAATT+TGG - chr7.3:46010438-46010457 MS.gene96582:CDS 50.0%
CTGTGACGTTGGCGCTATTA+CGG - chr7.3:46009920-46009939 MS.gene96582:CDS 50.0%
GCACTTCGTCTGTGGGAATT+GGG - chr7.3:46009670-46009689 MS.gene96582:CDS 50.0%
GGAAAAGCAACATCCGAAGG+AGG - chr7.3:46010174-46010193 MS.gene96582:intron 50.0%
GGTGAGGAAGCTACTCCAAT+TGG + chr7.3:46010483-46010502 None:intergenic 50.0%
GTGGCGGTGGAGATAATACT+TGG + chr7.3:46009773-46009792 None:intergenic 50.0%
TATTGCAAGACTAGTGGCCG+AGG - chr7.3:46009466-46009485 MS.gene96582:CDS 50.0%
TTTGTATGCTGAGGCAGGGA+AGG - chr7.3:46009397-46009416 MS.gene96582:CDS 50.0%
!! AAACTTTCTGGTTGTGGCGG+TGG + chr7.3:46009786-46009805 None:intergenic 50.0%
!! CCACAGACGAAGTGCTGAAT+AGG + chr7.3:46009665-46009684 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 46009320 46010767 46009320 ID=MS.gene96582
chr7.3 mRNA 46009320 46010767 46009320 ID=MS.gene96582.t1;Parent=MS.gene96582
chr7.3 exon 46010267 46010767 46010267 ID=MS.gene96582.t1.exon1;Parent=MS.gene96582.t1
chr7.3 CDS 46010267 46010767 46010267 ID=cds.MS.gene96582.t1;Parent=MS.gene96582.t1
chr7.3 exon 46009320 46010018 46009320 ID=MS.gene96582.t1.exon2;Parent=MS.gene96582.t1
chr7.3 CDS 46009320 46010018 46009320 ID=cds.MS.gene96582.t1;Parent=MS.gene96582.t1
Gene Sequence

>MS.gene96582

ATGGCAGCTAGCAATGCAACTAAATCAGTTGACAAAGTTACATTGAGAGTTATGGTGGACAAAGAAAGGAACAAAGTTTTGTATGCTGAGGCAGGGAAGGATTTTGTTGATGCTCTCTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCAAGACTAGTGGCCGAGGAGTCGAACATTGAAGCTGTGAAATTTGGCAGCATTAGCTCACTGTATCAGAGTGTGGCAAATCTTGATGAACAATATCTATGGACTCATACTTGCAAGGAAATGCTACTCAAGCCAAGGAGTTCCATGGAAGCTTATTGTCAGAAGATGAAACTGAATATCGACGACACAGAACCTATTCAGCACTTCGTCTGTGGGAATTGGGATTGTGTAAGAAAGGAAAGTGGGAACCTTTTGAGCTTATTTAGGAATCAAGTTGTGCAGTTGTGGAAGAGTAATGAACCAAGTATTATCTCCACCGCCACAACCAGAAAGTTTGAGTTCAGGAATCGGGTTTGTTAAGGAAACTGCTGCATTTATTATTTCTGACGATCTATATGTGATGCCTACTGTTTATGGAACAGTTATACAACTACTTCACAGGCTTGATATCTGTGACGTTGGCGCTATTACGGAACAAACTGTTGATATCAGCAAGATAGAGGCCAGATAATAGATATAAACCACTAAGAAAATATATTTTCCTTTTGTCTTATGCAATTGACTATTTGTTTTCTCATTAAATTTTATTACTTTTACAGGTAATAGATATTCCGAAGTTGTCATTGGTCTCAAAGACCCCTTTGACAGATTTCATCTTTACAAAGAAATATTCTGAAGCTGTCAATGTTCCAATATGTAAGATTGGAAAAGCAACATCCGAAGGAGGTAGGCAGATATCTGTGAAAGTAGCGAGAAGAAAATCAACCGGAGAGATTTTGTTTGCTGAACCAGGAGATGATTTTATTAACTTTATTTTCAGTTTTCTAACTCTCCCCTTAGGAGGAGTGTTGCATATGCTTGAAGGTTTCTCTTCTCTAAACTGCATCGATAATTTATACAAAAGCGTGACTGAGTTGAGTACCGACAGTTATTTAATCTCGAAACATCTTAAAGAGAAGCTAATTAGCCCTCCCATTGCTGCACAATTTGGGCTTGACAACCAAATAATTCCAATTGGAGTAGCTTCCTCACCTATCTATTCGTACATTAATATTGGTCAGTATACTCGCGCACTAACTGCTTCATGCATTTATAATGTCTTTGATCCTGCTGAAAAGTCTGTACTTCTAAATTTGGTTGATCCTAAGCTATCTTCTTCAAACACATCAAGACGTGGAGAATTTGCAAAAGGGCCATCAGTATACATGTTGACAGTTGACTTGGTTATTACTCCAGTGTCATCCTTCACTGCTATATCACATTTAAAGAGTTCAAATGTTACTCATAACGATCATTAA
Protein sequence

>MS.gene96582.t1

MAASNATKSVDKVTLRVMVDKERNKVLYAEAGKDFVDALFSFLTLPLGTIARLVAEESNIEAVKFGSISSLYQSVANLDEQYLWTHTCKEMLLKPRSSMEAYCQKMKLNIDDTEPIQHFVCGNWDCVRKESGNLLSLFRNQVVQLWKSNEPSIISTATTRKFEFRNRVIDIPKLSLVSKTPLTDFIFTKKYSEAVNVPICKIGKATSEGGRQISVKVARRKSTGEILFAEPGDDFINFIFSFLTLPLGGVLHMLEGFSSLNCIDNLYKSVTELSTDSYLISKHLKEKLISPPIAAQFGLDNQIIPIGVASSPIYSYINIGQYTRALTASCIYNVFDPAEKSVLLNLVDPKLSSSNTSRRGEFAKGPSVYMLTVDLVITPVSSFTAISHLKSSNVTHNDH