AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65110.t1 MTR_7g058710 78.502 414 58 2 4 386 71 484 0.0 654
MS.gene65110.t1 MTR_7g058700 60.453 397 85 7 11 386 583 928 2.10e-146 438
MS.gene65110.t1 MTR_7g066570 50.242 414 158 7 4 383 85 484 2.70e-122 365
MS.gene65110.t1 MTR_7g012680 46.747 415 142 9 4 386 85 452 1.63e-107 323
MS.gene65110.t1 MTR_7g066580 42.280 421 164 9 4 384 66 447 1.28e-93 288
MS.gene65110.t1 MTR_7g066260 43.237 414 160 10 4 379 86 462 4.03e-90 280
MS.gene65110.t1 MTR_2g029400 45.989 374 139 6 4 368 85 404 8.00e-90 276
MS.gene65110.t1 MTR_7g066340 41.951 410 165 8 4 379 83 453 2.87e-88 275
MS.gene65110.t1 MTR_1g041315 41.748 412 145 11 3 363 84 451 2.91e-85 268
MS.gene65110.t1 MTR_7g066350 41.546 414 154 10 4 376 80 446 2.59e-84 264
MS.gene65110.t1 MTR_1g014060 42.969 384 155 9 4 386 71 391 9.21e-84 260
MS.gene65110.t1 MTR_7g066400 40.241 415 159 11 4 376 67 434 5.49e-83 260
MS.gene65110.t1 MTR_7g066410 36.782 435 213 11 5 380 82 513 8.86e-78 249
MS.gene65110.t1 MTR_7g066430 36.842 418 213 10 5 379 76 485 1.18e-74 240
MS.gene65110.t1 MTR_7g066680 45.973 298 96 5 141 376 41 335 7.12e-71 226
MS.gene65110.t1 MTR_7g066360 39.655 406 174 12 4 379 85 449 5.90e-68 222
MS.gene65110.t1 MTR_7g066290 36.740 411 162 9 4 379 86 433 1.28e-64 212
MS.gene65110.t1 MTR_7g066280 35.731 417 192 11 12 379 1 390 2.58e-63 208
MS.gene65110.t1 MTR_7g062280 32.407 432 219 14 6 386 83 492 1.66e-57 195
MS.gene65110.t1 MTR_3g065200 33.943 383 185 9 8 365 68 407 4.88e-56 191
MS.gene65110.t1 MTR_7g063840 32.471 425 222 15 1 386 76 474 5.27e-55 188
MS.gene65110.t1 MTR_7g066310 33.496 409 136 11 4 379 78 383 3.49e-53 182
MS.gene65110.t1 MTR_7g063890 34.198 424 220 14 4 385 98 504 2.70e-52 182
MS.gene65110.t1 MTR_7g063900 32.477 428 225 13 4 386 81 489 2.36e-51 179
MS.gene65110.t1 MTR_4g019310 30.824 425 237 13 4 385 87 497 1.99e-50 177
MS.gene65110.t1 MTR_7g063660 30.588 425 227 14 4 386 80 478 5.29e-50 175
MS.gene65110.t1 MTR_7g062300 30.310 419 213 14 4 375 83 469 7.85e-50 174
MS.gene65110.t1 MTR_7g063820 32.151 423 230 12 4 386 80 485 3.76e-49 173
MS.gene65110.t1 MTR_7g063880 32.057 418 205 14 10 385 88 468 7.68e-48 169
MS.gene65110.t1 MTR_4g017410 30.913 427 229 16 2 385 87 490 7.12e-47 167
MS.gene65110.t1 MTR_7g063920 32.452 416 184 12 6 386 84 437 4.54e-46 164
MS.gene65110.t1 MTR_7g063670 32.099 405 239 12 1 386 71 458 2.43e-45 162
MS.gene65110.t1 MTR_4g017440 31.178 433 219 17 2 379 94 502 2.98e-45 163
MS.gene65110.t1 MTR_4g019340 30.900 411 216 12 2 369 118 503 2.56e-44 160
MS.gene65110.t1 MTR_4g017830 28.246 439 243 12 2 385 86 507 5.86e-44 160
MS.gene65110.t1 MTR_7g066480 32.824 393 195 13 2 380 85 422 7.11e-43 155
MS.gene65110.t1 MTR_7g063830 29.953 424 195 13 4 385 81 444 6.56e-42 152
MS.gene65110.t1 MTR_4g017610 30.123 405 232 11 4 376 91 476 1.59e-41 152
MS.gene65110.t1 MTR_3g007740 30.244 410 225 13 1 380 65 443 4.63e-40 147
MS.gene65110.t1 MTR_4g017550 28.671 429 230 15 2 377 66 471 1.59e-39 147
MS.gene65110.t1 MTR_4g017470 28.736 435 211 14 2 385 90 476 8.78e-38 142
MS.gene65110.t1 MTR_7g066490 35.398 226 111 8 10 227 93 291 8.66e-28 113
MS.gene65110.t1 MTR_7g066490 48.101 79 40 1 307 384 335 413 2.66e-12 68.2
MS.gene65110.t1 MTR_7g063720 29.310 232 113 4 185 386 23 233 2.12e-24 100
MS.gene65110.t1 MTR_7g063850 26.623 308 170 7 111 385 4 288 1.13e-18 85.9
MS.gene65110.t1 MTR_7g066390 45.192 104 50 2 276 379 26 122 1.49e-18 82.4
MS.gene65110.t1 MTR_7g063690 35.256 156 88 6 60 212 77 222 4.97e-17 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65110.t1 AT5G01120 28.814 413 252 9 1 375 77 485 6.41e-44 159
MS.gene65110.t1 AT5G01140 25.980 408 270 10 1 386 61 458 8.56e-40 147
MS.gene65110.t1 AT5G01150 27.778 414 256 10 6 385 82 486 4.86e-39 146
MS.gene65110.t1 AT5G43240 25.962 416 264 11 1 375 77 489 1.19e-35 137
MS.gene65110.t1 AT5G43240 25.962 416 264 11 1 375 77 489 1.19e-35 137
MS.gene65110.t1 AT5G43240 25.962 416 264 11 1 375 77 489 1.19e-35 137
MS.gene65110.t1 AT3G09110 31.081 222 145 5 1 220 77 292 3.03e-27 110
MS.gene65110.t1 AT3G09120 28.870 239 158 5 1 232 73 306 5.23e-26 107
MS.gene65110.t1 AT5G01130 24.879 414 244 10 1 386 77 451 2.31e-25 107
MS.gene65110.t1 AT3G09140 26.179 424 263 13 1 380 77 494 1.86e-24 105
MS.gene65110.t1 AT5G43240 24.308 325 209 8 86 375 23 345 2.74e-21 94.7
MS.gene65110.t1 AT3G09140 24.558 452 263 13 1 380 77 522 2.98e-21 95.9
MS.gene65110.t1 AT5G37320 25.412 425 250 13 1 380 78 480 3.68e-21 95.5

Find 77 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCCAATTGGAATTATT+TGG 0.146766 7.1:+42794016 None:intergenic
ATTCCTGAACTCAGACTTTC+TGG 0.157859 7.1:+42795385 None:intergenic
CAAGTTTGTACCTTTAAATT+TGG 0.202533 7.1:-42793893 MS.gene65110:CDS
TTAGGATCAACCAAATTTAA+AGG 0.268846 7.1:+42793883 None:intergenic
AGCACTTCGTCTGTGGGAAT+TGG 0.291346 7.1:-42795510 MS.gene65110:CDS
AAATCTTGATGAACAATATC+TGG 0.316676 7.1:-42795630 None:intergenic
CCAATTCATAACAAACATTA+AGG 0.329872 7.1:-42793540 MS.gene65110:CDS
GAAGAAAGGGTTATTAGAAT+TGG 0.378932 7.1:-42793712 MS.gene65110:CDS
GCACTTCGTCTGTGGGAATT+GGG 0.386412 7.1:-42795509 MS.gene65110:CDS
AAGCTGGAAATCTCTGATAT+TGG 0.388055 7.1:-42795271 MS.gene65110:CDS
CCACAGACGAAGTGCTGAAT+AGG 0.390073 7.1:+42795517 None:intergenic
TTCAGGAATCGGGTTTGTTA+AGG 0.391995 7.1:-42795371 MS.gene65110:CDS
CCTTAATGTTTGTTATGAAT+TGG 0.392524 7.1:+42793540 None:intergenic
GGTGGGGAAGCTACTCCAAT+TGG 0.417702 7.1:+42794006 None:intergenic
AGATATTCTGAAGTTGTCAT+TGG 0.419892 7.1:-42795127 MS.gene65110:CDS
AGACTTTCTGGTTGTGGCGG+TGG 0.425983 7.1:+42795397 None:intergenic
TCAACGTTTGGTATGACAAA+TGG 0.431249 7.1:-42793569 MS.gene65110:CDS
GACAACCAAATAATTCCAAT+TGG 0.437125 7.1:-42794021 MS.gene65110:CDS
GTAGTGAGAAGGAAATCAAC+TGG 0.439748 7.1:-42794976 MS.gene65110:CDS
AGCTCAAATTGTGCAGCAAT+GGG 0.440040 7.1:+42794045 None:intergenic
AAAGGTACAAACTTGTCATC+AGG 0.440723 7.1:+42793901 None:intergenic
GATTCCTAAATAAGCTCAAA+AGG 0.452463 7.1:+42795461 None:intergenic
GCTTGGATGAACTCAACGTT+TGG 0.454523 7.1:-42793581 MS.gene65110:CDS
GTCTCTGCATTCTAAAAGCT+TGG 0.457550 7.1:-42793598 MS.gene65110:CDS
CTGTAAATGATGTGGAAGAA+AGG 0.457723 7.1:-42793726 MS.gene65110:CDS
TGTAAATGATGTGGAAGAAA+GGG 0.465008 7.1:-42793725 MS.gene65110:CDS
TAAGCTTGCATGGAATTCCT+TGG 0.477817 7.1:+42795577 None:intergenic
GAAAGTCTGAGTTCAGGAAT+CGG 0.478252 7.1:-42795382 MS.gene65110:CDS
GAACTCAGACTTTCTGGTTG+TGG 0.478625 7.1:+42795391 None:intergenic
AGTCGTGGAGAATTTGCAAA+AGG 0.484219 7.1:-42793838 MS.gene65110:CDS
AAGCTCAAATTGTGCAGCAA+TGG 0.488270 7.1:+42794044 None:intergenic
AAAGTCTGAGTTCAGGAATC+GGG 0.490673 7.1:-42795381 MS.gene65110:CDS
TCAAGATGAAGTCTGTCAAA+GGG 0.491562 7.1:+42795094 None:intergenic
GGAGTGTTGCATATGCTTGA+AGG 0.498562 7.1:-42794880 MS.gene65110:intron
CAACCAGAAAGTCTGAGTTC+AGG 0.501237 7.1:-42795388 MS.gene65110:CDS
ATATGCAACACTCCTCCTAC+GGG 0.508337 7.1:+42794889 None:intergenic
TTCAAGATGAAGTCTGTCAA+AGG 0.512232 7.1:+42795093 None:intergenic
CTTCTGACAATAAGCTTGCA+TGG 0.517353 7.1:+42795567 None:intergenic
CATATGCAACACTCCTCCTA+CGG 0.520606 7.1:+42794888 None:intergenic
TGTTGATATCAGCAAGAAAG+AGG 0.522522 7.1:-42795230 MS.gene65110:CDS
GCGTTAGAAGCAGATAGCTT+AGG 0.526053 7.1:+42793865 None:intergenic
GTGGCGGTGGAGATAATACT+TGG 0.526149 7.1:+42795410 None:intergenic
TAAGAATGACAATAATAGAC+AGG 0.529427 7.1:+42793985 None:intergenic
CCTATTCAGCACTTCGTCTG+TGG 0.530948 7.1:-42795517 MS.gene65110:CDS
GGGTTTGTTAAGGAAACCGC+TGG 0.535702 7.1:-42795361 MS.gene65110:CDS
TATACAACTACTTCACAAGC+TGG 0.537151 7.1:-42795287 MS.gene65110:CDS
AGGAATCAATTGTGCAGTTG+TGG 0.541823 7.1:-42795445 MS.gene65110:CDS
CTTCGCACATGCATAATGCT+TGG 0.543987 7.1:-42793927 MS.gene65110:CDS
GGTTATTAGAATTGGTCAGA+AGG 0.551108 7.1:-42793704 MS.gene65110:CDS
GTCGTGGAGAATTTGCAAAA+GGG 0.558749 7.1:-42793837 MS.gene65110:CDS
GAATTGGGATTGTGTAAGAA+AGG 0.559576 7.1:-42795494 MS.gene65110:CDS
AAAAGGGCCATCAGAATACA+TGG 0.567965 7.1:-42793821 MS.gene65110:CDS
AATGACAATAATAGACAGGT+GGG 0.569744 7.1:+42793989 None:intergenic
AAATGTTTCTGTAAATGATG+TGG 0.571065 7.1:-42793734 MS.gene65110:CDS
CTCAGACTTTCTGGTTGTGG+CGG 0.574203 7.1:+42795394 None:intergenic
GATTGTGTAAGAAAGGAAAG+TGG 0.574963 7.1:-42795487 MS.gene65110:CDS
CTATTCAGCACTTCGTCTGT+GGG 0.575094 7.1:-42795516 MS.gene65110:CDS
TATCTGGTCTCGTACTTGCA+AGG 0.577456 7.1:-42795614 MS.gene65110:CDS
AAAGCGACATCTGAAGGAGG+TGG 0.578204 7.1:-42795015 MS.gene65110:CDS
TATTAGAATTGGTCAGAAGG+AGG 0.581812 7.1:-42793701 MS.gene65110:intron
TTTCTGACTCTCCCCGTAGG+AGG 0.585159 7.1:-42794901 MS.gene65110:CDS
TCAAATTGTGCAGCAATGGG+AGG 0.586331 7.1:+42794048 None:intergenic
ATTGTGTAAGAAAGGAAAGT+GGG 0.596290 7.1:-42795486 MS.gene65110:CDS
CAAATTGTGCAGCAATGGGA+GGG 0.600976 7.1:+42794049 None:intergenic
ACTGTTACCATGTATTCTGA+TGG 0.604062 7.1:+42793814 None:intergenic
TATCTGTGAAAGTAGTGAGA+AGG 0.607361 7.1:-42794987 MS.gene65110:CDS
AAAGCCGTGGAGGATGACAT+TGG 0.608156 7.1:+42793775 None:intergenic
GAATGACAATAATAGACAGG+TGG 0.610807 7.1:+42793988 None:intergenic
TAGTCCAATGTCATCCTCCA+CGG 0.612336 7.1:-42793779 MS.gene65110:CDS
AGGAAATGCTACTCAAGCCA+AGG 0.617283 7.1:-42795594 MS.gene65110:CDS
GCTTCTAACGCATCAAGTCG+TGG 0.623556 7.1:-42793853 MS.gene65110:CDS
GTCTGAAATAATAAATCCAG+CGG 0.625981 7.1:+42795345 None:intergenic
ATTTAAATGTGATAAAGCCG+TGG 0.645420 7.1:+42793762 None:intergenic
ATTCATAACAAACATTAAGG+AGG 0.651735 7.1:-42793537 MS.gene65110:CDS
TAAATGTGATAAAGCCGTGG+AGG 0.678458 7.1:+42793765 None:intergenic
ATGACAATAATAGACAGGTG+GGG 0.721913 7.1:+42793990 None:intergenic
TATGCAACACTCCTCCTACG+GGG 0.762507 7.1:+42794890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAAAATAAGTATAATTA+AGG + chr7.1:42793998-42794017 None:intergenic 10.0%
!!! TTAATTATACTTATTTTTAC+AGG - chr7.1:42793997-42794016 MS.gene65110:CDS 10.0%
!!! TTTTGAGATTAAATAACTTT+CGG + chr7.1:42794353-42794372 None:intergenic 15.0%
!! ATAGCTCACTATATTTATTT+AGG - chr7.1:42794917-42794936 MS.gene65110:CDS 20.0%
!!! GTTGGATCATTTTTTTATAT+TGG - chr7.1:42794710-42794729 MS.gene65110:intron 20.0%
!!! TTTGAGATTAAATAACTTTC+GGG + chr7.1:42794352-42794371 None:intergenic 20.0%
! ATAACTGTTCCAAAAACATT+AGG + chr7.1:42793847-42793866 None:intergenic 25.0%
! ATGAGGAAGATGATAAAATT+TGG - chr7.1:42794659-42794678 MS.gene65110:intron 25.0%
! ATTCATAACAAACATTAAGG+AGG - chr7.1:42795614-42795633 MS.gene65110:CDS 25.0%
! CAAGTTTGTACCTTTAAATT+TGG - chr7.1:42795258-42795277 MS.gene65110:CDS 25.0%
! CCAATTCATAACAAACATTA+AGG - chr7.1:42795611-42795630 MS.gene65110:CDS 25.0%
! GTTAGCAATTCAAAATTCTT+TGG + chr7.1:42794752-42794771 None:intergenic 25.0%
! TAAGAATGACAATAATAGAC+AGG + chr7.1:42795169-42795188 None:intergenic 25.0%
! TGAGGAAGATGATAAAATTT+GGG - chr7.1:42794660-42794679 MS.gene65110:intron 25.0%
! TTAGGATCAACCAAATTTAA+AGG + chr7.1:42795271-42795290 None:intergenic 25.0%
! TTCTTCTTAAAGAAATCACT+AGG + chr7.1:42794805-42794824 None:intergenic 25.0%
!! AAATGTTTCTGTAAATGATG+TGG - chr7.1:42795417-42795436 MS.gene65110:CDS 25.0%
!! TGATAAAATTTGGGTTATTG+TGG - chr7.1:42794669-42794688 MS.gene65110:intron 25.0%
!! TGTCATTCTTACATTTTTCA+TGG - chr7.1:42795178-42795197 MS.gene65110:intron 25.0%
!!! ATTTGTTGTTAACATATTGC+AGG - chr7.1:42795530-42795549 MS.gene65110:CDS 25.0%
!!! CCTTAATGTTTGTTATGAAT+TGG + chr7.1:42795614-42795633 None:intergenic 25.0%
!!! GCTTTTTCAATCTGAAATAT+GGG + chr7.1:42794121-42794140 None:intergenic 25.0%
!!! TTTGTTGTTAACATATTGCA+GGG - chr7.1:42795531-42795550 MS.gene65110:CDS 25.0%
AATGACAATAATAGACAGGT+GGG + chr7.1:42795165-42795184 None:intergenic 30.0%
ATTGTGTAAGAAAGGAAAGT+GGG - chr7.1:42793665-42793684 MS.gene65110:intron 30.0%
ATTTAAATGTGATAAAGCCG+TGG + chr7.1:42795392-42795411 None:intergenic 30.0%
CACATAATTCGTGTAATCAA+GGG - chr7.1:42794380-42794399 MS.gene65110:intron 30.0%
CTACTCCAATTGGAATTATT+TGG + chr7.1:42795138-42795157 None:intergenic 30.0%
GAAACTTGGTAGAAGAAATT+AGG - chr7.1:42794602-42794621 MS.gene65110:intron 30.0%
GAAGAAAGGGTTATTAGAAT+TGG - chr7.1:42795439-42795458 MS.gene65110:CDS 30.0%
GACAACCAAATAATTCCAAT+TGG - chr7.1:42795130-42795149 MS.gene65110:intron 30.0%
GATTCCTAAATAAGCTCAAA+AGG + chr7.1:42793693-42793712 None:intergenic 30.0%
GTATTATTAGTACTACGAAC+CGG - chr7.1:42794939-42794958 MS.gene65110:CDS 30.0%
TCACATAATTCGTGTAATCA+AGG - chr7.1:42794379-42794398 MS.gene65110:intron 30.0%
TGTAAATGATGTGGAAGAAA+GGG - chr7.1:42795426-42795445 MS.gene65110:CDS 30.0%
TTACACGAATTATGTGACTA+TGG + chr7.1:42794376-42794395 None:intergenic 30.0%
! ATTTGGGTTATTGTGGAAAT+TGG - chr7.1:42794676-42794695 MS.gene65110:intron 30.0%
! GTCTGAAATAATAAATCCAG+CGG + chr7.1:42793809-42793828 None:intergenic 30.0%
! TATGTGATGCCTAATGTTTT+TGG - chr7.1:42793835-42793854 MS.gene65110:CDS 30.0%
! TTTGGGTTATTGTGGAAATT+GGG - chr7.1:42794677-42794696 MS.gene65110:intron 30.0%
!! AGATATTCTGAAGTTGTCAT+TGG - chr7.1:42794024-42794043 MS.gene65110:CDS 30.0%
!!! CGCTTTTTCAATCTGAAATA+TGG + chr7.1:42794122-42794141 None:intergenic 30.0%
AAATGAATCACCATGAGTTG+AGG - chr7.1:42794541-42794560 MS.gene65110:intron 35.0%
AAGCTGGAAATCTCTGATAT+TGG - chr7.1:42793880-42793899 MS.gene65110:CDS 35.0%
ACTGTTACCATGTATTCTGA+TGG + chr7.1:42795340-42795359 None:intergenic 35.0%
AGAAGAATTCGGTACGTATA+GGG + chr7.1:42794985-42795004 None:intergenic 35.0%
ATATTGGACTTTGCTGCATT+TGG - chr7.1:42794726-42794745 MS.gene65110:intron 35.0%
ATGACAATAATAGACAGGTG+GGG + chr7.1:42795164-42795183 None:intergenic 35.0%
ATTGAAAAAGCGACATCTGA+AGG - chr7.1:42794130-42794149 MS.gene65110:intron 35.0%
CTGTAAATGATGTGGAAGAA+AGG - chr7.1:42795425-42795444 MS.gene65110:CDS 35.0%
GAATGACAATAATAGACAGG+TGG + chr7.1:42795166-42795185 None:intergenic 35.0%
GAATTGGGATTGTGTAAGAA+AGG - chr7.1:42793657-42793676 MS.gene65110:intron 35.0%
GATTGTGTAAGAAAGGAAAG+TGG - chr7.1:42793664-42793683 MS.gene65110:intron 35.0%
GGTTATTAGAATTGGTCAGA+AGG - chr7.1:42795447-42795466 MS.gene65110:CDS 35.0%
TATACAACTACTTCACAAGC+TGG - chr7.1:42793864-42793883 MS.gene65110:CDS 35.0%
TATCTGTGAAAGTAGTGAGA+AGG - chr7.1:42794164-42794183 MS.gene65110:intron 35.0%
TATTAGAATTGGTCAGAAGG+AGG - chr7.1:42795450-42795469 MS.gene65110:CDS 35.0%
TCAACGTTTGGTATGACAAA+TGG - chr7.1:42795582-42795601 MS.gene65110:CDS 35.0%
TCAAGATGAAGTCTGTCAAA+GGG + chr7.1:42794060-42794079 None:intergenic 35.0%
TGTTGATATCAGCAAGAAAG+AGG - chr7.1:42793921-42793940 MS.gene65110:CDS 35.0%
TTCAAGATGAAGTCTGTCAA+AGG + chr7.1:42794061-42794080 None:intergenic 35.0%
TTGGTAGAAGAAATTAGGTC+TGG - chr7.1:42794607-42794626 MS.gene65110:intron 35.0%
! AAAGGTACAAACTTGTCATC+AGG + chr7.1:42795253-42795272 None:intergenic 35.0%
! AAATTGGGCTTTTCTCTTGT+TGG - chr7.1:42794692-42794711 MS.gene65110:intron 35.0%
! GGAACCTTTTGAGCTTATTT+AGG - chr7.1:42793686-42793705 MS.gene65110:intron 35.0%
!!! CCTTTTTTTCAACCAATCAG+CGG + chr7.1:42794499-42794518 None:intergenic 35.0%
AAAAGGGCCATCAGAATACA+TGG - chr7.1:42795330-42795349 MS.gene65110:CDS 40.0%
AAAGTCTGAGTTCAGGAATC+GGG - chr7.1:42793770-42793789 MS.gene65110:CDS 40.0%
AAGCTCAAATTGTGCAGCAA+TGG + chr7.1:42795110-42795129 None:intergenic 40.0%
ACATAATTCGCAGTTCGTTC+CGG + chr7.1:42795045-42795064 None:intergenic 40.0%
AGAAGAACAGGAACAAAGAG+TGG - chr7.1:42794572-42794591 MS.gene65110:intron 40.0%
AGCTCAAATTGTGCAGCAAT+GGG + chr7.1:42795109-42795128 None:intergenic 40.0%
AGGAATCAATTGTGCAGTTG+TGG - chr7.1:42793706-42793725 MS.gene65110:CDS 40.0%
AGTCGTGGAGAATTTGCAAA+AGG - chr7.1:42795313-42795332 MS.gene65110:CDS 40.0%
ATCAAGGGAGAATTGCGAAT+TGG - chr7.1:42794395-42794414 MS.gene65110:intron 40.0%
ATTCCTGAACTCAGACTTTC+TGG + chr7.1:42793769-42793788 None:intergenic 40.0%
CTTCTGACAATAAGCTTGCA+TGG + chr7.1:42793587-42793606 None:intergenic 40.0%
GAAAGTCTGAGTTCAGGAAT+CGG - chr7.1:42793769-42793788 MS.gene65110:CDS 40.0%
GAAGAATTCGGTACGTATAG+GGG + chr7.1:42794984-42795003 None:intergenic 40.0%
GAGAAGAATTCGGTACGTAT+AGG + chr7.1:42794986-42795005 None:intergenic 40.0%
GTAGTGAGAAGGAAATCAAC+TGG - chr7.1:42794175-42794194 MS.gene65110:intron 40.0%
GTCGTGGAGAATTTGCAAAA+GGG - chr7.1:42795314-42795333 MS.gene65110:CDS 40.0%
TAAATGTGATAAAGCCGTGG+AGG + chr7.1:42795389-42795408 None:intergenic 40.0%
TAACCATGCTTTGGTACTCT+TGG + chr7.1:42794476-42794495 None:intergenic 40.0%
TAAGCTTGCATGGAATTCCT+TGG + chr7.1:42793577-42793596 None:intergenic 40.0%
! AGAAATTAGGTCTGGAACAG+TGG - chr7.1:42794615-42794634 MS.gene65110:intron 40.0%
! CCGCTGATTGGTTGAAAAAA+AGG - chr7.1:42794496-42794515 MS.gene65110:intron 40.0%
! GTCTCTGCATTCTAAAAGCT+TGG - chr7.1:42795553-42795572 MS.gene65110:CDS 40.0%
!! GAGATTTTGTTTGCTGAAGC+AGG - chr7.1:42794199-42794218 MS.gene65110:intron 40.0%
!! TTCAGGAATCGGGTTTGTTA+AGG - chr7.1:42793780-42793799 MS.gene65110:CDS 40.0%
AAAGCATGGTTACCGCTGAT+TGG - chr7.1:42794484-42794503 MS.gene65110:intron 45.0%
AAGCCACTTCGTAAGACTGT+TGG - chr7.1:42795474-42795493 MS.gene65110:CDS 45.0%
AATCAGCGGTAACCATGCTT+TGG + chr7.1:42794485-42794504 None:intergenic 45.0%
ACACCAACAGTCTTACGAAG+TGG + chr7.1:42795480-42795499 None:intergenic 45.0%
AGAGTGGAGAGTGAGAAACT+TGG - chr7.1:42794588-42794607 MS.gene65110:intron 45.0%
AGGAAATGCTACTCAAGCCA+AGG - chr7.1:42793557-42793576 MS.gene65110:CDS 45.0%
ATATGCAACACTCCTCCTAC+GGG + chr7.1:42794265-42794284 None:intergenic 45.0%
CAAATTGTGCAGCAATGGGA+GGG + chr7.1:42795105-42795124 None:intergenic 45.0%
CAACCAGAAAGTCTGAGTTC+AGG - chr7.1:42793763-42793782 MS.gene65110:CDS 45.0%
CATATGCAACACTCCTCCTA+CGG + chr7.1:42794266-42794285 None:intergenic 45.0%
CTATTCAGCACTTCGTCTGT+GGG - chr7.1:42793635-42793654 MS.gene65110:intron 45.0%
CTTCGCACATGCATAATGCT+TGG - chr7.1:42795224-42795243 MS.gene65110:intron 45.0%
GAAAAAGCGACATCTGAAGG+AGG - chr7.1:42794133-42794152 MS.gene65110:intron 45.0%
GCGTTAGAAGCAGATAGCTT+AGG + chr7.1:42795289-42795308 None:intergenic 45.0%
GCTTGGATGAACTCAACGTT+TGG - chr7.1:42795570-42795589 MS.gene65110:CDS 45.0%
TACGCGACAGGAGAAGAATT+CGG + chr7.1:42794996-42795015 None:intergenic 45.0%
TAGTCCAATGTCATCCTCCA+CGG - chr7.1:42795372-42795391 MS.gene65110:CDS 45.0%
TATCTGGTCTCGTACTTGCA+AGG - chr7.1:42793537-42793556 MS.gene65110:CDS 45.0%
TCAAATTGTGCAGCAATGGG+AGG + chr7.1:42795106-42795125 None:intergenic 45.0%
! AATTAGGTCTGGAACAGTGG+TGG - chr7.1:42794618-42794637 MS.gene65110:intron 45.0%
! AGTACCGAATTCGGGTACTT+CGG - chr7.1:42794424-42794443 MS.gene65110:intron 45.0%
! ATTCGGGTACTTCGGTGTAT+TGG - chr7.1:42794432-42794451 MS.gene65110:intron 45.0%
! CGTATAGGGGTATACAGCTT+CGG + chr7.1:42794971-42794990 None:intergenic 45.0%
! TACACCGAAGTACCCGAATT+CGG + chr7.1:42794431-42794450 None:intergenic 45.0%
!! GAACCAAGAGTACCAAAGCA+TGG - chr7.1:42794470-42794489 MS.gene65110:intron 45.0%
!! GAACTCAGACTTTCTGGTTG+TGG + chr7.1:42793763-42793782 None:intergenic 45.0%
!! GGAGTGTTGCATATGCTTGA+AGG - chr7.1:42794271-42794290 MS.gene65110:intron 45.0%
!! TGGTACGTGAGTACCGAATT+CGG - chr7.1:42794415-42794434 MS.gene65110:intron 45.0%
AAAGCCGTGGAGGATGACAT+TGG + chr7.1:42795379-42795398 None:intergenic 50.0%
AAAGCGACATCTGAAGGAGG+TGG - chr7.1:42794136-42794155 MS.gene65110:intron 50.0%
AGCACTTCGTCTGTGGGAAT+TGG - chr7.1:42793641-42793660 MS.gene65110:intron 50.0%
CCTATTCAGCACTTCGTCTG+TGG - chr7.1:42793634-42793653 MS.gene65110:intron 50.0%
CTCACTCAGTCCTCAACTCA+TGG + chr7.1:42794554-42794573 None:intergenic 50.0%
GAGGACTGAGTGAGAAGAAC+AGG - chr7.1:42794560-42794579 MS.gene65110:intron 50.0%
GCACTTCGTCTGTGGGAATT+GGG - chr7.1:42793642-42793661 MS.gene65110:intron 50.0%
GCTTCTAACGCATCAAGTCG+TGG - chr7.1:42795298-42795317 MS.gene65110:CDS 50.0%
GTGGCGGTGGAGATAATACT+TGG + chr7.1:42793744-42793763 None:intergenic 50.0%
TATACAGCTTCGGTACGCTC+CGG + chr7.1:42794961-42794980 None:intergenic 50.0%
TATGCAACACTCCTCCTACG+GGG + chr7.1:42794264-42794283 None:intergenic 50.0%
! AGTTTTCTGACTCTCCCCGT+AGG - chr7.1:42794247-42794266 MS.gene65110:intron 50.0%
! CTTTGGTACTCTTGGTTCGC+TGG + chr7.1:42794468-42794487 None:intergenic 50.0%
! GGCTGTTGTTTGAGCAGATG+AGG - chr7.1:42794642-42794661 MS.gene65110:intron 50.0%
!! CCACAGACGAAGTGCTGAAT+AGG + chr7.1:42793637-42793656 None:intergenic 50.0%
!! CTCAGACTTTCTGGTTGTGG+CGG + chr7.1:42793760-42793779 None:intergenic 50.0%
!! GGGTTTGTTAAGGAAACCGC+TGG - chr7.1:42793790-42793809 MS.gene65110:CDS 50.0%
!! GGTACGTGAGTACCGAATTC+GGG - chr7.1:42794416-42794435 MS.gene65110:intron 50.0%
GGTGGGGAAGCTACTCCAAT+TGG + chr7.1:42795148-42795167 None:intergenic 55.0%
TTTCTGACTCTCCCCGTAGG+AGG - chr7.1:42794250-42794269 MS.gene65110:intron 55.0%
! TAGGTCTGGAACAGTGGTGG+CGG - chr7.1:42794621-42794640 MS.gene65110:intron 55.0%
!! AGACTTTCTGGTTGTGGCGG+TGG + chr7.1:42793757-42793776 None:intergenic 55.0%
GTTCGTTCCGGTACGCGGTA+CGG + chr7.1:42795033-42795052 None:intergenic 60.0%
TCGCAGTTCGTTCCGGTACG+CGG + chr7.1:42795038-42795057 None:intergenic 60.0%
TTCGTTCCGGTACGCGGTAC+GGG + chr7.1:42795032-42795051 None:intergenic 60.0%
ACAGGTTCGCGGTACGCGAC+AGG + chr7.1:42795008-42795027 None:intergenic 65.0%
CCTGTACCCGTACCGCGTAC+CGG - chr7.1:42795023-42795042 MS.gene65110:CDS 65.0%
GCGGTACGGGTACAGGTTCG+CGG + chr7.1:42795019-42795038 None:intergenic 65.0%
CCGGTACGCGGTACGGGTAC+AGG + chr7.1:42795026-42795045 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 42793529 42795644 42793529 ID=MS.gene65110
chr7.1 mRNA 42793529 42795644 42793529 ID=MS.gene65110.t1;Parent=MS.gene65110
chr7.1 exon 42795227 42795644 42795227 ID=MS.gene65110.t1.exon1;Parent=MS.gene65110.t1
chr7.1 CDS 42795227 42795644 42795227 ID=cds.MS.gene65110.t1;Parent=MS.gene65110.t1
chr7.1 exon 42794881 42795147 42794881 ID=MS.gene65110.t1.exon2;Parent=MS.gene65110.t1
chr7.1 CDS 42794881 42795147 42794881 ID=cds.MS.gene65110.t1;Parent=MS.gene65110.t1
chr7.1 exon 42793702 42794084 42793702 ID=MS.gene65110.t1.exon3;Parent=MS.gene65110.t1
chr7.1 CDS 42793702 42794084 42793702 ID=cds.MS.gene65110.t1;Parent=MS.gene65110.t1
chr7.1 exon 42793529 42793621 42793529 ID=MS.gene65110.t1.exon4;Parent=MS.gene65110.t1
chr7.1 CDS 42793529 42793621 42793529 ID=cds.MS.gene65110.t1;Parent=MS.gene65110.t1
Gene Sequence

>MS.gene65110

ATGAACAATATCTGGTCTCGTACTTGCAAGGAAATGCTACTCAAGCCAAGGAATTCCATGCAAGCTTATTGTCAGAAGATGAAACTGAATATCGACGACACAGAACCTATTCAGCACTTCGTCTGTGGGAATTGGGATTGTGTAAGAAAGGAAAGTGGGAACCTTTTGAGCTTATTTAGGAATCAATTGTGCAGTTGTGGAAGAGTAATGAACCAAGTATTATCTCCACCGCCACAACCAGAAAGTCTGAGTTCAGGAATCGGGTTTGTTAAGGAAACCGCTGGATTTATTATTTCAGACGATCTTTATGTGATGCCTAATGTTTTTGGAACAGTTATACAACTACTTCACAAGCTGGAAATCTCTGATATTGGCGCTATTACAGAACAAACTGTTGATATCAGCAAGAAAGAGGCATGTTTTCTTATGAAGTTCTCATCTTAACTATATTGATTATTTGTTTTCTCCTTAATTATACTTATTTTTACAGGTTATAGATATTCTGAAGTTGTCATTGGTCTCAAAGAACCCTTTGACAGACTTCATCTTGAAAAAGAAATATTCTGAAGTTGTCAATGCTCTCAAAGATCCCATATTTCAGATTGAAAAAGCGACATCTGAAGGAGGTGGACAGATATCTGTGAAAGTAGTGAGAAGGAAATCAACTGGAGAGATTTTGTTTGCTGAAGCAGGAGATGATTTTATTAACTTTATTTTCAGTTTTCTGACTCTCCCCGTAGGAGGAGTGTTGCATATGCTTGAAGGTTTATCTTCTATAAACTGCATTGATAATTTATACAAAAGCATGACTGAGTTGAGTCCCGAAAGTTATTTAATCTCAAAACCATAGTCACATAATTCGTGTAATCAAGGGAGAATTGCGAATTGGTACGTGAGTACCGAATTCGGGTACTTCGGTGTATTGGTACGCACAAACCAGCGAACCAAGAGTACCAAAGCATGGTTACCGCTGATTGGTTGAAAAAAAGGTTTAGACTACAAAATAACTATAAAATGAATCACCATGAGTTGAGGACTGAGTGAGAAGAACAGGAACAAAGAGTGGAGAGTGAGAAACTTGGTAGAAGAAATTAGGTCTGGAACAGTGGTGGCGGCTGTTGTTTGAGCAGATGAGGAAGATGATAAAATTTGGGTTATTGTGGAAATTGGGCTTTTCTCTTGTTGGATCATTTTTTTATATTGGACTTTGCTGCATTTGGCCAAAGAATTTTGAATTGCTAACTCTGCAGAAAATAATAATATAAGTGTATGACCTAGTGATTTCTTTAAGAAGAAACTCTTTTCTTTTTTAACTAAACTACTTTTTAAAAAAAATCTATAAATATATTTTTTGTAATTAAAAGTTTTAGTAAAAAAATACTTTTTTTATAGCTCACTATATTTATTTAGGTATTATTAGTACTACGAACCGGAGCGTACCGAAGCTGTATACCCCTATACGTACCGAATTCTTCTCCTGTCGCGTACCGCGAACCTGTACCCGTACCGCGTACCGGAACGAACTGCGAATTATGTGACTATGCTCAAAACATCTCAAAGAGAAACTAATTAGCCCTCCCATTGCTGCACAATTTGAGCTTGACAACCAAATAATTCCAATTGGAGTAGCTTCCCCACCTGTCTATTATTGTCATTCTTACATTTTTCATGGTCAATTTACTCGCGCACTAACTGCTTCGCACATGCATAATGCTTGGTATCCTGATGACAAGTTTGTACCTTTAAATTTGGTTGATCCTAAGCTATCTGCTTCTAACGCATCAAGTCGTGGAGAATTTGCAAAAGGGCCATCAGAATACATGGTAACAGTTGACTTAGCTATTAGTCCAATGTCATCCTCCACGGCTTTATCACATTTAAATAGTTCAAATGTTTCTGTAAATGATGTGGAAGAAAGGGTTATTAGAATTGGTCAGAAGGAGGTAAGCCACTTCGTAAGACTGTTGGTGTTTTCATTAATTTGCATGCATTGTTACAATGATTTGTTGTTAACATATTGCAGGGTCTCTGCATTCTAAAAGCTTGGATGAACTCAACGTTTGGTATGACAAATGGACTCAACCAATTCATAACAAACATTAAGGAGGAGAAATGA
Protein sequence

>MS.gene65110.t1

MNNIWSRTCKEMLLKPRNSMQAYCQKMKLNIDDTEPIQHFVCGNWDCVRKESGNLLSLFRNQLCSCGRVMNQVLSPPPQPESLSSGIGFVKETAGFIISDDLYVMPNVFGTVIQLLHKLEISDIGAITEQTVDISKKEAYILKLSLVSKNPLTDFILKKKYSEVVNALKDPIFQIEKATSEGGGQISVKVVRRKSTGEILFAEAGDDFINFIFSFLTLPVGGVLHMLEEKLISPPIAAQFELDNQIIPIGVASPPVYYCHSYIFHGQFTRALTASHMHNAWYPDDKFVPLNLVDPKLSASNASSRGEFAKGPSEYMVTVDLAISPMSSSTALSHLNSSNVSVNDVEERVIRIGQKEGLCILKAWMNSTFGMTNGLNQFITNIKEEK