AlfalfaGEDB | Msa0742170

M. sativa cultivar zhongmu-4 / Msa0742170

KEGG: K02335
GO: GO:0000002 GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006264 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009987 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032042 GO:0033258 GO:0033259 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576
PFAM: PF01612.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742170	XP_003617486.1	97.601	1084	26	0	1	1084	1	1084	0.0	2219

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742170	sp\|F4I6M1\|POLIA_ARATH	67.534	807	255	4	281	1084	248	1050	0.0	1158

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742170	G7K3G7	97.601	1084	26	0	1	1084	1	1084	0.0	2219

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0742170	0.808653	2.785768e-50	-8.615850e-47
Msa0001420	Msa0742170	0.852544	4.305975e-61	-8.615850e-47
Msa0001510	Msa0742170	0.812462	4.189001e-51	-8.615850e-47
Msa0001540	Msa0742170	0.901519	2.467862e-78	-8.615850e-47
Msa0002060	Msa0742170	0.851616	7.902157e-61	-8.615850e-47
Msa0002690	Msa0742170	0.828143	1.058823e-54	-8.615850e-47
Msa0002700	Msa0742170	0.827196	1.787730e-54	-8.615850e-47
Msa0007930	Msa0742170	0.808583	2.884105e-50	-8.615850e-47
Msa0009210	Msa0742170	0.807250	5.540146e-50	-8.615850e-47
Msa0009800	Msa0742170	0.803508	3.370886e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742170	MtrunA17_Chr5g0443681	97.601	1084	26	0	1	1084	1	1084	0.0	2219
Msa0742170	MtrunA17_Chr3g0098181	69.125	1017	272	11	94	1084	7	1007	0.0	1407
Msa0742170	MtrunA17_Chr3g0098161	72.240	915	218	6	193	1084	21	922	0.0	1358
Msa0742170	MtrunA17_Chr1g0147341	27.410	332	175	9	786	1082	1811	2111	3.84e-17	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0742170	AT1G50840.1	67.534	807	255	4	281	1084	248	1050	1158
Msa0742170	AT1G50840.2	67.410	807	257	4	281	1084	248	1051	1156
Msa0742170	AT3G20540.1	66.391	845	270	7	249	1084	195	1034	1147
Msa0742170	AT3G20540.2	66.391	845	270	7	249	1084	210	1049	1147

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Find 264 sgRNAs with CRISPR-Local

Find 523 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATCAGGCGACAAAA+AGG	0.447871	5_1:-61990086	Msa0742170:CDS
AAAAGGAAGTGCTTCTTGAG+TGG	0.603714	5_1:-61986913	Msa0742170:CDS
AAAAGGTCATGTCAAGGTCT+CGG	0.537334	5_1:-61990069	Msa0742170:CDS
AAAAGTTGAAGGAGCTTGGA+TGG	0.491725	5_1:-61985963	Msa0742170:CDS
AAAGAAGTAAGGACCTGCAC+TGG	0.534919	5_1:+61986356	None:intergenic
AAAGCATCACCACTAACTGA+CGG	0.648166	5_1:+61989101	None:intergenic
AAAGTTGATAACTCTGCATA+TGG	0.394014	5_1:-61988954	Msa0742170:CDS
AAATGTACACAGCCAGTGGT+TGG	0.625678	5_1:-61989124	Msa0742170:CDS
AAATTGGTACTCTGCAAAAT+AGG	0.311891	5_1:-61985390	Msa0742170:exon
AAATTGTATTGTTTCTATAG+AGG	0.422041	5_1:-61985227	Msa0742170:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTATTAGGGATGATATAC+TGG	-	chr5_1:61985360-61985379	Msa0742170:three_prime_UTR	30.0%
GTTATTAGGGATGATATACT+GGG	-	chr5_1:61985361-61985380	Msa0742170:three_prime_UTR	30.0%
ATGCAGATTCATTAAACTGA+TGG	+	chr5_1:61986846-61986865	None:intergenic	30.0%
TCAGTTTAATGAATCTGCAT+TGG	-	chr5_1:61986846-61986865	Msa0742170:intron	30.0%
TCGTATCTATGAAGATATTC+TGG	-	chr5_1:61987002-61987021	Msa0742170:CDS	30.0%
TATCTATGAAGATATTCTGG+TGG	-	chr5_1:61987005-61987024	Msa0742170:CDS	30.0%
AGATGATCACAGTAAAATAC+CGG	-	chr5_1:61987061-61987080	Msa0742170:intron	30.0%
ATAACATGCTTCAGCATTTA+TGG	-	chr5_1:61987278-61987297	Msa0742170:intron	30.0%
TTTCTGCTGTATGAATGATA+TGG	-	chr5_1:61987516-61987535	Msa0742170:intron	30.0%
TGTCATGTTATAGAGAACTA+TGG	-	chr5_1:61987616-61987635	Msa0742170:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	61984844	61992993	61984844	ID=Msa0742170;Name=Msa0742170
chr5_1	mRNA	61984844	61992993	61984844	ID=Msa0742170-mRNA-1;Parent=Msa0742170;Name=Msa0742170-mRNA-1;_AED=0.06;_eAED=0.06;_QI=42\|1\|1\|1\|1\|1\|12\|547\|1084
chr5_1	exon	61984844	61985552	61984844	ID=Msa0742170-mRNA-1:exon:18169;Parent=Msa0742170-mRNA-1
chr5_1	exon	61985948	61986037	61985948	ID=Msa0742170-mRNA-1:exon:18168;Parent=Msa0742170-mRNA-1
chr5_1	exon	61986370	61986582	61986370	ID=Msa0742170-mRNA-1:exon:18167;Parent=Msa0742170-mRNA-1
chr5_1	exon	61986687	61986779	61986687	ID=Msa0742170-mRNA-1:exon:18166;Parent=Msa0742170-mRNA-1
chr5_1	exon	61986868	61987062	61986868	ID=Msa0742170-mRNA-1:exon:18165;Parent=Msa0742170-mRNA-1
chr5_1	exon	61987154	61987246	61987154	ID=Msa0742170-mRNA-1:exon:18164;Parent=Msa0742170-mRNA-1
chr5_1	exon	61988054	61988149	61988054	ID=Msa0742170-mRNA-1:exon:18163;Parent=Msa0742170-mRNA-1
chr5_1	exon	61988833	61989286	61988833	ID=Msa0742170-mRNA-1:exon:18162;Parent=Msa0742170-mRNA-1
chr5_1	exon	61989566	61990245	61989566	ID=Msa0742170-mRNA-1:exon:18161;Parent=Msa0742170-mRNA-1
chr5_1	exon	61990416	61990607	61990416	ID=Msa0742170-mRNA-1:exon:18160;Parent=Msa0742170-mRNA-1
chr5_1	exon	61990727	61991591	61990727	ID=Msa0742170-mRNA-1:exon:18159;Parent=Msa0742170-mRNA-1
chr5_1	exon	61992830	61992993	61992830	ID=Msa0742170-mRNA-1:exon:18158;Parent=Msa0742170-mRNA-1
chr5_1	five_prime_UTR	61992952	61992993	61992952	ID=Msa0742170-mRNA-1:five_prime_utr;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61992830	61992951	61992830	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61990727	61991591	61990727	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61990416	61990607	61990416	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61989566	61990245	61989566	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61988833	61989286	61988833	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61988054	61988149	61988054	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61987154	61987246	61987154	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61986868	61987062	61986868	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61986687	61986779	61986687	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61986370	61986582	61986370	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61985948	61986037	61985948	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	CDS	61985391	61985552	61985391	ID=Msa0742170-mRNA-1:cds;Parent=Msa0742170-mRNA-1
chr5_1	three_prime_UTR	61984844	61985390	61984844	ID=Msa0742170-mRNA-1:three_prime_utr;Parent=Msa0742170-mRNA-1

Gene Sequence

>Msa0742170

ATGGAGGCCACTACACAGTCCACTTCGTTAAGACCATATTGCCCTTTATGCTGCCGTCTCTCTCGCCCTTTCTCCCTCTCCTTATCTTCATGCTCTTCTCTCGTTTCCCTTACTCCCCACAGAAGAAAGATCAAGGCAATCCAGATTGCTAGCAATGGCCTTCGAAATAGCAGTGCGCATAATAATTGTGTTAGAGCAGATTTATTGTGTCCAAAGTTGACATCTGCGGGGTTAAATAAACACAGTAACACTGGATACAAACATAATTTCCCATACAAGAGTCCGGTTCGCGTTACATTTATGAAGTTTTCAAATGCATCAGCTAGCATGTTAGAGGAAATGACAGCGGAGGAAGAGGTGAATTCTTCGCATTCCTCTGAAACACAAGTTAGGAAGGTGGATGTGGCTCCTTGCAATCCTGAACTTTCCACAACAGCCACTGAAAGAAAATTGGCTGGTGGTGATAATAGAGGATGGACTTTAGCAAAAAATAGGTTAGCTGAAGGTAAGAAGGAAATGAACGGCACAAACAAATACGAGAGAAAAAGTAATGGCTCTCATGTATCTAATAGATTTGCTTCCATTGGTCGGAGACAAGGTTCTTCTACGGATGTTGTCAGCAATCTTGTACGGCAAGGTCATGGTGAACATGTCTCATCTTCTGTTCAATATTCTGTATTAAACAATTCAAAGATGTTTACAGATTCTGAAACTGTGGTCCATCAGTTTAATGAATCTGCATTGGAGATCAGTGAAGAGAAAATTACTAAAGTTAATGGTGATGATGTTTTGGAGGAAACTGCGATGGACTCAACTGATGCGACGTTTGATAGAAAGGCTCGTCGCACCGACCAGTCAAAACTTCAGGACAGACTCTGTCGTATCTATGAAGATATTCTGGTGGTTGATAATATTCCTCTAGCAGAGGAGGTTGTTAAGATGATCACAGTAAAATACCGGCATCTTATTTATGCATGTGATACCGAGGTAGCCAAGATAGATGTCAAACAAGAAACACCTGTAGATCATGGGGAGATAACATGCTTCAGCATTTATGGTGGTCCAGATGCAGATTTTGGAGACGGAAAATCTTGTATCTGGGTAGATGTGCTTGATGGTGGAGGCAAAGAGATTTTAGAAAAATTTGCTAATTTTTTCAGCGATCCTTCGATCATGAAGGTCTGGCATAATTATAGCTTTGACTGTCATGTTATAGAGAACTATGGATTCAAGGTTTCTGGTTTTCATGCTGATACAATGCACATGGCACGGTTATGGGATTCATCAAGACAATTAAATGGGGGTTATTCTCTTGAAAAACTATCAGGCGACAAAAAGGTCATGTCAAGGTCTCGGTTTAACCATGAAAAGGATTTGATTGGTAAAGTGTCAATGAAAACTATATTTGGTAAGAAAAAGGTGAAAAAAGATGGATCTGAGGGTAAAATTATTACCATTGCCCCTGTTGAAGATCTGCAGAGAGATGAGCGCGTACCTTGGATATGTTATTCTGCCTTAGATGCTAAAAGCACTTTGAATCTGTATGAGAGCCTAAAGAGCTATCTTTTAGACATGCCGTGGAAATTTGATGGTGTACCAGTTTCTGGGAAAACCATGTATGATTTCTACAATGAATATTGGCGCCCATTTGGGGAGATTCTAGTCCGAATGGAATCTGAGGGAATGCTAGTTGATCGGGAGTATCTTGAAGGCATAGAAAAGGTTGCCAAAGTAGAGCAAGAGATAGCTGTTGATAGATTCAGGAAATGGGCATGTAGGTATTGTCCCGATGCCAAGTATATGAATGTCGGAAGCGATTTACAGTTGCGCCAGCTGCTTTTTGGTGGTACCTTGAACAGAAAAGACTCCAATCTAGCACTTCCAACTGAGCGAATATTCAAAGTTCCCAATGTTGATGAAGTGATTGAAGAAGGAAAGAAGGCTCCCAAAAAATTTCGTGATATGAAGGTGAAGAGCCTGGGTTATACCTTGAAGACAGAAATGTACACAGCCAGTGGTTGGCCGTCAGTTAGTGGTGATGCTTTAAAGGTCCTGGCTGGAAACATTTCGTCTGATTTTGACTTTACTGATGAGATTTATAACTTAGATGATGACCATGATGATGATGATGAACATGGAAATCTTCCTCAAAATCATATTGAGGTTTCAAAAGTTGATAACTCTGCATATGGAACAGCCTTTTCTGCTTTTCCAACGGAGAAAGAAGGGAGAGAAGCTTGCCATGCAATTGCTGCTTTATGTGAAGTCAGTTCAATCAACTCTCTGATTTCGAATTTCATTCTACCCCTGCAGGGACATAATATATCAGGAAAGGATAACCGTGTTCACTGCTCCTTAAATATCAACACAGAGACAGGACGCTTGTCAGCTAGACGGCCAAATCTGCAGAATCAACCTGCTTTGGAAAAAGACCGATACAAAATCCGTCAAGCATTCATTGCTGCGCCTGGGAATTCTCTTATAGTTGCTGATTATGGACAGCTTGAACTTAGGATTCTGGCACATCTTGCCAACTGTAAGAGCATGATGGAAGCTTTTAAAGCCGGTGGAGATTTCCATTCAAGGACTGCAATGAATATGTATCCATATATTCGTGAAGCAGTTGAGAAAAAGGAAGTGCTTCTTGAGTGGCACCCTCAGCCTGGTGAAGATAAACCCCCAGTGCCTCTATTGAAGGATGCATTTGGTTCTGAAAGGCGAAAAGCTAAAATGCTTAACTTCTCAATTGCATATGGGAAGACTCCAGTAGGACTTTCTAAGGATTGGGGGGTTACTGTGAAAGAAGCTAAGAAAACAGTTGACCTTTGGTACAACGATAGAAAAGAAGTTTTGCAATGGCAAGAGGAGCGTAAAAAAGAAGCCCGCGAGTACCATTGTGTCTACACATTACTAGGGCGAGCCCGGCGGTTCCCTTTGATGGCCCAAGCTAATACTTACCAGAAAGGTCACATTGAACGAGCTGCTATTAATACTCCAGTGCAGGGTAGTGCTGCTGATGTTGCCATGTGTGCTATGATACAAATTTCTAATAATAAAAAGTTGAAGGAGCTTGGATGGAAGTTACTTCTACAGGTTCATGATGAAGTCATATTGGAAGGACCGACGGAGTCGGCTGAGGTTGCGAAATCCATAGTTGTTGAGTGCATGTCCAAACCCTTCTATGGCAAGAATATTCTTAAAGTTGATCTCTCTGTTGATGCCAAGTGTGCTCAAAATTGGTACTCTGCAAAATAG

Protein sequence

>Msa0742170

MEATTQSTSLRPYCPLCCRLSRPFSLSLSSCSSLVSLTPHRRKIKAIQIASNGLRNSSAHNNCVRADLLCPKLTSAGLNKHSNTGYKHNFPYKSPVRVTFMKFSNASASMLEEMTAEEEVNSSHSSETQVRKVDVAPCNPELSTTATERKLAGGDNRGWTLAKNRLAEGKKEMNGTNKYERKSNGSHVSNRFASIGRRQGSSTDVVSNLVRQGHGEHVSSSVQYSVLNNSKMFTDSETVVHQFNESALEISEEKITKVNGDDVLEETAMDSTDATFDRKARRTDQSKLQDRLCRIYEDILVVDNIPLAEEVVKMITVKYRHLIYACDTEVAKIDVKQETPVDHGEITCFSIYGGPDADFGDGKSCIWVDVLDGGGKEILEKFANFFSDPSIMKVWHNYSFDCHVIENYGFKVSGFHADTMHMARLWDSSRQLNGGYSLEKLSGDKKVMSRSRFNHEKDLIGKVSMKTIFGKKKVKKDGSEGKIITIAPVEDLQRDERVPWICYSALDAKSTLNLYESLKSYLLDMPWKFDGVPVSGKTMYDFYNEYWRPFGEILVRMESEGMLVDREYLEGIEKVAKVEQEIAVDRFRKWACRYCPDAKYMNVGSDLQLRQLLFGGTLNRKDSNLALPTERIFKVPNVDEVIEEGKKAPKKFRDMKVKSLGYTLKTEMYTASGWPSVSGDALKVLAGNISSDFDFTDEIYNLDDDHDDDDEHGNLPQNHIEVSKVDNSAYGTAFSAFPTEKEGREACHAIAALCEVSSINSLISNFILPLQGHNISGKDNRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMMEAFKAGGDFHSRTAMNMYPYIREAVEKKEVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLSKDWGVTVKEAKKTVDLWYNDRKEVLQWQEERKKEAREYHCVYTLLGRARRFPLMAQANTYQKGHIERAAINTPVQGSAADVAMCAMIQISNNKKLKELGWKLLLQVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILKVDLSVDAKCAQNWYSAK*