AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002021.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002021.01.T01 MTR_1g047990 96.884 353 11 0 1 353 1 353 0.0 693
MsG0180002021.01.T01 MTR_6g079650 57.609 92 38 1 260 350 9 100 8.95e-32 115
MsG0180002021.01.T01 MTR_4g104680 36.500 200 116 7 16 213 4 194 4.73e-22 97.8
MsG0180002021.01.T01 MTR_3g086590 35.938 128 80 1 78 203 61 188 7.47e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002021.01.T01 AT4G26500 71.525 295 71 4 69 350 77 371 3.46e-138 397
MsG0180002021.01.T01 AT1G55805 71.591 88 24 1 263 349 68 155 8.89e-40 138
MsG0180002021.01.T01 AT1G67810 31.429 175 113 3 40 208 35 208 1.93e-16 78.6
MsG0180002021.01.T01 AT5G50210 32.812 192 124 4 24 213 35 223 7.94e-15 76.3

Find 94 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAGATGAGTTGGATTC+TGG 0.176580 1:+31223995 MsG0180002021.01.T01:CDS
CCAAGTTTAGGTGTTGATTT+TGG 0.250352 1:+31223737 MsG0180002021.01.T01:CDS
GAAGAGAAGCTGTTCGTATT+TGG 0.258831 1:-31223291 None:intergenic
TTAACCCCTTCTAGAAATAA+TGG 0.260107 1:+31223566 MsG0180002021.01.T01:CDS
GAAGAGGGAAAGTGAGAATT+TGG 0.282002 1:-31223060 None:intergenic
AGCTGTTCGTATTTGGCTTT+GGG 0.314164 1:-31223284 None:intergenic
AAGCTGTTCGTATTTGGCTT+TGG 0.330510 1:-31223285 None:intergenic
AAGGTTGTGTCTCTCAGGTT+TGG 0.339683 1:+31223372 MsG0180002021.01.T01:CDS
CCCAAGATGCATTACAAAAT+CGG 0.341009 1:-31223531 None:intergenic
TTTACGATTTCTTGAAGCTT+TGG 0.349699 1:-31223239 None:intergenic
CCTTCTGTGACCCCAAGTTT+AGG 0.359965 1:+31223725 MsG0180002021.01.T01:CDS
AGGGAGAGGGAAGAGGATAA+AGG 0.373167 1:+31223793 MsG0180002021.01.T01:CDS
CTCGCTGCTTTACTCGTTCA+AGG 0.382796 1:+31223467 MsG0180002021.01.T01:CDS
AGAGTTTCAAGGGAAGAGTT+TGG 0.384288 1:+31223943 MsG0180002021.01.T01:CDS
TAACCCCTTCTAGAAATAAT+GGG 0.387357 1:+31223567 MsG0180002021.01.T01:CDS
AGGTTGTGTCTCTCAGGTTT+GGG 0.389742 1:+31223373 MsG0180002021.01.T01:CDS
GCTTTATGTGGAAGCTGAAA+AGG 0.396625 1:+31223631 MsG0180002021.01.T01:CDS
TGATGACGAGAATGTTGAAT+TGG 0.400400 1:+31223769 MsG0180002021.01.T01:CDS
TGGGAGTGATTGGAAGGTGA+TGG 0.400836 1:-31223141 None:intergenic
GCTGGACATGCTGGTGTTAG+AGG 0.402189 1:+31223878 MsG0180002021.01.T01:CDS
ACCTGGATAATTTCATTAAC+GGG 0.402796 1:-31223503 None:intergenic
CGTTGTCTATGAAGCTGATT+CGG 0.403821 1:+31223424 MsG0180002021.01.T01:CDS
CTTTGGGTTCTTGCACGGAT+TGG 0.404849 1:-31223268 None:intergenic
AAGGGAAGAGTTTGGTTAAG+AGG 0.410584 1:+31223951 MsG0180002021.01.T01:CDS
ATTGGGATTCGAGGGGTTTG+AGG 0.413363 1:-31223325 None:intergenic
TCTTCAACTTCCAACTCAAT+AGG 0.421778 1:-31223839 None:intergenic
GGTTTGGGTCCGAGCCTACT+TGG 0.423534 1:+31223388 MsG0180002021.01.T01:CDS
GACCTGGATAATTTCATTAA+CGG 0.427963 1:-31223504 None:intergenic
ACTTCTGAATCTGACTCAAT+TGG 0.431624 1:+31223656 MsG0180002021.01.T01:CDS
CCAAAATCAACACCTAAACT+TGG 0.437746 1:-31223737 None:intergenic
GGGAGTGATTGGAAGGTGAT+GGG 0.438845 1:-31223140 None:intergenic
AAAAGCACTTATGCTTTATG+TGG 0.444787 1:+31223619 MsG0180002021.01.T01:CDS
TTCGATGGGTTGAAGGGAAG+TGG 0.449871 1:-31223207 None:intergenic
GGAGTTCTTCGATGGGTTGA+AGG 0.449918 1:-31223214 None:intergenic
AATTGGGAGGGAGAGGGAAG+AGG 0.450448 1:+31223786 MsG0180002021.01.T01:CDS
GAAAGAGAAGAGGGTGTTTG+TGG 0.454312 1:-31223114 None:intergenic
AAAACCCATTATTTCTAGAA+GGG 0.455596 1:-31223571 None:intergenic
TGAACATGAAGAAAGGGAAT+TGG 0.456159 1:-31223021 None:intergenic
GTGGTTTCTAAAGAGTTTCA+AGG 0.456838 1:+31223932 MsG0180002021.01.T01:CDS
CTTTGGAGGGAGTTCTTCGA+TGG 0.457099 1:-31223222 None:intergenic
TAGCTTGCTTCAAGATGAGT+TGG 0.460976 1:+31223988 MsG0180002021.01.T01:CDS
AGTCGAAGGTTGTGTCTCTC+AGG 0.465822 1:+31223367 MsG0180002021.01.T01:CDS
AAAGAGAAGAGGGTGTTTGT+GGG 0.468262 1:-31223113 None:intergenic
GGAACTTCAGCCTATTGAGT+TGG 0.469218 1:+31223829 MsG0180002021.01.T01:CDS
ATCGAAATGAACATGAAGAA+AGG 0.469710 1:-31223028 None:intergenic
GATGATGATGATGGTGGTGG+TGG 0.473775 1:-31223170 None:intergenic
TTTGGCTTTGGGTTCTTGCA+CGG 0.474908 1:-31223273 None:intergenic
CGGATTCTGTTCTCACCAAA+GGG 0.484901 1:+31223444 MsG0180002021.01.T01:CDS
ACGATTTCTTGAAGCTTTGG+AGG 0.485000 1:-31223236 None:intergenic
CCAAGATGCATTACAAAATC+GGG 0.485227 1:-31223530 None:intergenic
GACACATTTCAATGTTAAAG+TGG 0.486500 1:+31223913 MsG0180002021.01.T01:CDS
AATGTTGAATTGGGAGGGAG+AGG 0.486652 1:+31223779 MsG0180002021.01.T01:CDS
TACGAACAGCTTCTCTTCTA+CGG 0.489334 1:+31223296 MsG0180002021.01.T01:CDS
TCGGATTCTGTTCTCACCAA+AGG 0.495251 1:+31223443 MsG0180002021.01.T01:CDS
GATGACGAGAATGTTGAATT+GGG 0.497878 1:+31223770 MsG0180002021.01.T01:CDS
GATAAAGGAAAAGCTTGAAA+AGG 0.498122 1:+31223808 MsG0180002021.01.T01:CDS
ACCGACTTCAGAAGGCGTCT+TGG 0.500732 1:-31224041 None:intergenic
AGAGTTTGGTTAAGAGGCAT+AGG 0.503534 1:+31223957 MsG0180002021.01.T01:CDS
TGAAGGGAAGTGGATGGAAG+TGG 0.504888 1:-31223197 None:intergenic
CTTTATGTGGAAGCTGAAAA+GGG 0.506897 1:+31223632 MsG0180002021.01.T01:CDS
TTACAAAATCGGGTGTGACC+TGG 0.509018 1:-31223520 None:intergenic
CATCCTTCACCGACTTCAGA+AGG 0.509950 1:-31224049 None:intergenic
TCGAAATGAACATGAAGAAA+GGG 0.512101 1:-31223027 None:intergenic
GTTCTTGCACGGATTGGAAG+AGG 0.512154 1:-31223262 None:intergenic
CAAAATCAACACCTAAACTT+GGG 0.519100 1:-31223736 None:intergenic
TATCAACATGCTGGACATGC+TGG 0.527867 1:+31223869 MsG0180002021.01.T01:CDS
ACATGAAGAAAGGGAATTGG+TGG 0.538024 1:-31223018 None:intergenic
TGGGTCCGAGCCTACTTGGA+TGG 0.540763 1:+31223392 MsG0180002021.01.T01:CDS
GAGTAAAGCAGCGAGCCCTT+TGG 0.541289 1:-31223459 None:intergenic
ATGTTGAATTGGGAGGGAGA+GGG 0.542038 1:+31223780 MsG0180002021.01.T01:CDS
AAACCCATTATTTCTAGAAG+GGG 0.542885 1:-31223570 None:intergenic
GATGGGTTTGAAAGAGAAGA+GGG 0.545338 1:-31223123 None:intergenic
ACCCGTTAATGAAATTATCC+AGG 0.545924 1:+31223502 MsG0180002021.01.T01:CDS
CCTAAACTTGGGGTCACAGA+AGG 0.548902 1:-31223725 None:intergenic
CGATTTCTTGAAGCTTTGGA+GGG 0.549690 1:-31223235 None:intergenic
ATGGGTTGAAGGGAAGTGGA+TGG 0.556200 1:-31223203 None:intergenic
AGCTTTGTTGAGAATTCAAG+TGG 0.556883 1:+31223701 MsG0180002021.01.T01:CDS
GTTTCTTTCACCATCCAAGT+AGG 0.562090 1:-31223402 None:intergenic
ACGAGAATGTTGAATTGGGA+GGG 0.562350 1:+31223774 MsG0180002021.01.T01:CDS
GCCAAGACGCCTTCTGAAGT+CGG 0.570403 1:+31224040 MsG0180002021.01.T01:CDS
TGGTTTCTAAAGAGTTTCAA+GGG 0.574771 1:+31223933 MsG0180002021.01.T01:CDS
TGATGGGTTTGAAAGAGAAG+AGG 0.578500 1:-31223124 None:intergenic
TTTCACCATCCAAGTAGGCT+CGG 0.579472 1:-31223397 None:intergenic
GAGTTCTTCGATGGGTTGAA+GGG 0.581123 1:-31223213 None:intergenic
ACGCCTTCTGAAGTCGGTGA+AGG 0.585013 1:+31224046 MsG0180002021.01.T01:CDS
TTTGGAGGGAGTTCTTCGAT+GGG 0.593786 1:-31223221 None:intergenic
GATGTGTCTTATCAACATGC+TGG 0.597053 1:+31223860 MsG0180002021.01.T01:CDS
AACATTCTCGTCATCAACCT+CGG 0.597911 1:-31223762 None:intergenic
CTGGACATGCTGGTGTTAGA+GGG 0.601848 1:+31223879 MsG0180002021.01.T01:CDS
ACTAAAGACAACAAAGTCGA+AGG 0.628037 1:+31223353 MsG0180002021.01.T01:CDS
AAAATCAACACCTAAACTTG+GGG 0.630526 1:-31223735 None:intergenic
CTAAACTTGGGGTCACAGAA+GGG 0.633009 1:-31223724 None:intergenic
GACGAGAATGTTGAATTGGG+AGG 0.654890 1:+31223773 MsG0180002021.01.T01:CDS
GCTGGTGTTAGAGGGAGCGA+TGG 0.680792 1:+31223887 MsG0180002021.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGTCTTTAGTTTTAAATT+GGG - Chr1:31223345-31223364 None:intergenic 20.0%
!!! TGTTGTCTTTAGTTTTAAAT+TGG - Chr1:31223346-31223365 None:intergenic 20.0%
!!! AAAAACCCATTATTTCTAGA+AGG - Chr1:31223575-31223594 None:intergenic 25.0%
!!! AAAACCCATTATTTCTAGAA+GGG - Chr1:31223574-31223593 None:intergenic 25.0%
!!! AGAGTTATTTTTGTTGAAGA+GGG - Chr1:31223078-31223097 None:intergenic 25.0%
!!! TAGAGTTATTTTTGTTGAAG+AGG - Chr1:31223079-31223098 None:intergenic 25.0%
AAAATCAACACCTAAACTTG+GGG - Chr1:31223738-31223757 None:intergenic 30.0%
ACCTGGATAATTTCATTAAC+GGG - Chr1:31223506-31223525 None:intergenic 30.0%
ATCGAAATGAACATGAAGAA+AGG - Chr1:31223031-31223050 None:intergenic 30.0%
CAAAATCAACACCTAAACTT+GGG - Chr1:31223739-31223758 None:intergenic 30.0%
GACACATTTCAATGTTAAAG+TGG + Chr1:31223913-31223932 MsG0180002021.01.T01:CDS 30.0%
GACCTGGATAATTTCATTAA+CGG - Chr1:31223507-31223526 None:intergenic 30.0%
GATAAAGGAAAAGCTTGAAA+AGG + Chr1:31223808-31223827 MsG0180002021.01.T01:CDS 30.0%
TCGAAATGAACATGAAGAAA+GGG - Chr1:31223030-31223049 None:intergenic 30.0%
TTTACGATTTCTTGAAGCTT+TGG - Chr1:31223242-31223261 None:intergenic 30.0%
! TAACCCCTTCTAGAAATAAT+GGG + Chr1:31223567-31223586 MsG0180002021.01.T01:CDS 30.0%
! TGGTTTCTAAAGAGTTTCAA+GGG + Chr1:31223933-31223952 MsG0180002021.01.T01:CDS 30.0%
! TTAACCCCTTCTAGAAATAA+TGG + Chr1:31223566-31223585 MsG0180002021.01.T01:CDS 30.0%
!! AAAAGCACTTATGCTTTATG+TGG + Chr1:31223619-31223638 MsG0180002021.01.T01:CDS 30.0%
!! AAACCCATTATTTCTAGAAG+GGG - Chr1:31223573-31223592 None:intergenic 30.0%
!!! AGTTTTAAATTGGGATTCGA+GGG - Chr1:31223336-31223355 None:intergenic 30.0%
!!! TAGTTTTAAATTGGGATTCG+AGG - Chr1:31223337-31223356 None:intergenic 30.0%
ACCCGTTAATGAAATTATCC+AGG + Chr1:31223502-31223521 MsG0180002021.01.T01:CDS 35.0%
ACTAAAGACAACAAAGTCGA+AGG + Chr1:31223353-31223372 MsG0180002021.01.T01:CDS 35.0%
ACTTCTGAATCTGACTCAAT+TGG + Chr1:31223656-31223675 MsG0180002021.01.T01:CDS 35.0%
CCAAAATCAACACCTAAACT+TGG - Chr1:31223740-31223759 None:intergenic 35.0%
CCAAGATGCATTACAAAATC+GGG - Chr1:31223533-31223552 None:intergenic 35.0%
CCCAAGATGCATTACAAAAT+CGG - Chr1:31223534-31223553 None:intergenic 35.0%
CTTTATGTGGAAGCTGAAAA+GGG + Chr1:31223632-31223651 MsG0180002021.01.T01:CDS 35.0%
GATGACGAGAATGTTGAATT+GGG + Chr1:31223770-31223789 MsG0180002021.01.T01:CDS 35.0%
TCTTCAACTTCCAACTCAAT+AGG - Chr1:31223842-31223861 None:intergenic 35.0%
TGAACATGAAGAAAGGGAAT+TGG - Chr1:31223024-31223043 None:intergenic 35.0%
! CCGATTTTGTAATGCATCTT+GGG + Chr1:31223531-31223550 MsG0180002021.01.T01:CDS 35.0%
! GTGGTTTCTAAAGAGTTTCA+AGG + Chr1:31223932-31223951 MsG0180002021.01.T01:CDS 35.0%
! TGATGACGAGAATGTTGAAT+TGG + Chr1:31223769-31223788 MsG0180002021.01.T01:CDS 35.0%
!! AGCTTTGTTGAGAATTCAAG+TGG + Chr1:31223701-31223720 MsG0180002021.01.T01:CDS 35.0%
!! GTTTTAAATTGGGATTCGAG+GGG - Chr1:31223335-31223354 None:intergenic 35.0%
!!! CCAAGTTTAGGTGTTGATTT+TGG + Chr1:31223737-31223756 MsG0180002021.01.T01:CDS 35.0%
AACATTCTCGTCATCAACCT+CGG - Chr1:31223765-31223784 None:intergenic 40.0%
AAGGGAAGAGTTTGGTTAAG+AGG + Chr1:31223951-31223970 MsG0180002021.01.T01:CDS 40.0%
ACATGAAGAAAGGGAATTGG+TGG - Chr1:31223021-31223040 None:intergenic 40.0%
ACGAGAATGTTGAATTGGGA+GGG + Chr1:31223774-31223793 MsG0180002021.01.T01:CDS 40.0%
AGAGTTTCAAGGGAAGAGTT+TGG + Chr1:31223943-31223962 MsG0180002021.01.T01:CDS 40.0%
CGTTGTCTATGAAGCTGATT+CGG + Chr1:31223424-31223443 MsG0180002021.01.T01:CDS 40.0%
GAAGAGAAGCTGTTCGTATT+TGG - Chr1:31223294-31223313 None:intergenic 40.0%
GAAGAGGGAAAGTGAGAATT+TGG - Chr1:31223063-31223082 None:intergenic 40.0%
GATGTGTCTTATCAACATGC+TGG + Chr1:31223860-31223879 MsG0180002021.01.T01:CDS 40.0%
GCTTTATGTGGAAGCTGAAA+AGG + Chr1:31223631-31223650 MsG0180002021.01.T01:CDS 40.0%
GTTTCTTTCACCATCCAAGT+AGG - Chr1:31223405-31223424 None:intergenic 40.0%
TACGAACAGCTTCTCTTCTA+CGG + Chr1:31223296-31223315 MsG0180002021.01.T01:CDS 40.0%
! AAGCTGTTCGTATTTGGCTT+TGG - Chr1:31223288-31223307 None:intergenic 40.0%
! ACGATTTCTTGAAGCTTTGG+AGG - Chr1:31223239-31223258 None:intergenic 40.0%
! AGAGTTTGGTTAAGAGGCAT+AGG + Chr1:31223957-31223976 MsG0180002021.01.T01:CDS 40.0%
! AGTGGTGATGATGATGATGA+TGG - Chr1:31223182-31223201 None:intergenic 40.0%
! CCCGATTTTGTAATGCATCT+TGG + Chr1:31223530-31223549 MsG0180002021.01.T01:CDS 40.0%
! CTTCAAGATGAGTTGGATTC+TGG + Chr1:31223995-31224014 MsG0180002021.01.T01:CDS 40.0%
! GATGGGTTTGAAAGAGAAGA+GGG - Chr1:31223126-31223145 None:intergenic 40.0%
! TTACTCGTTCAAGGCTTTTC+AGG + Chr1:31223476-31223495 MsG0180002021.01.T01:CDS 40.0%
! TTTTGTTGGGAGTGATTGGA+AGG - Chr1:31223150-31223169 None:intergenic 40.0%
!! AAAGAGAAGAGGGTGTTTGT+GGG - Chr1:31223116-31223135 None:intergenic 40.0%
!! AGCTGTTCGTATTTGGCTTT+GGG - Chr1:31223287-31223306 None:intergenic 40.0%
!! CGATTTCTTGAAGCTTTGGA+GGG - Chr1:31223238-31223257 None:intergenic 40.0%
!! TAGCTTGCTTCAAGATGAGT+TGG + Chr1:31223988-31224007 MsG0180002021.01.T01:CDS 40.0%
!! TGATGGGTTTGAAAGAGAAG+AGG - Chr1:31223127-31223146 None:intergenic 40.0%
AAGGTTGTGTCTCTCAGGTT+TGG + Chr1:31223372-31223391 MsG0180002021.01.T01:CDS 45.0%
AATGTTGAATTGGGAGGGAG+AGG + Chr1:31223779-31223798 MsG0180002021.01.T01:CDS 45.0%
AGGTTGTGTCTCTCAGGTTT+GGG + Chr1:31223373-31223392 MsG0180002021.01.T01:CDS 45.0%
ATGTTGAATTGGGAGGGAGA+GGG + Chr1:31223780-31223799 MsG0180002021.01.T01:CDS 45.0%
CGGATTCTGTTCTCACCAAA+GGG + Chr1:31223444-31223463 MsG0180002021.01.T01:CDS 45.0%
CTAAACTTGGGGTCACAGAA+GGG - Chr1:31223727-31223746 None:intergenic 45.0%
GACGAGAATGTTGAATTGGG+AGG + Chr1:31223773-31223792 MsG0180002021.01.T01:CDS 45.0%
GGAACTTCAGCCTATTGAGT+TGG + Chr1:31223829-31223848 MsG0180002021.01.T01:CDS 45.0%
TATCAACATGCTGGACATGC+TGG + Chr1:31223869-31223888 MsG0180002021.01.T01:CDS 45.0%
TCGGATTCTGTTCTCACCAA+AGG + Chr1:31223443-31223462 MsG0180002021.01.T01:CDS 45.0%
TTACAAAATCGGGTGTGACC+TGG - Chr1:31223523-31223542 None:intergenic 45.0%
TTTCACCATCCAAGTAGGCT+CGG - Chr1:31223400-31223419 None:intergenic 45.0%
TTTGGAGGGAGTTCTTCGAT+GGG - Chr1:31223224-31223243 None:intergenic 45.0%
!! GAAAGAGAAGAGGGTGTTTG+TGG - Chr1:31223117-31223136 None:intergenic 45.0%
!! GAGTTCTTCGATGGGTTGAA+GGG - Chr1:31223216-31223235 None:intergenic 45.0%
!! GATGATGATGATGATGGTGG+TGG - Chr1:31223176-31223195 None:intergenic 45.0%
!! GGTGATGATGATGATGATGG+TGG - Chr1:31223179-31223198 None:intergenic 45.0%
!! TTTGGCTTTGGGTTCTTGCA+CGG - Chr1:31223276-31223295 None:intergenic 45.0%
!!! AGGTGTTGATTTTGGTTCCG+AGG + Chr1:31223745-31223764 MsG0180002021.01.T01:CDS 45.0%
!!! ATGGTGGTGGTGGTTTTGTT+GGG - Chr1:31223163-31223182 None:intergenic 45.0%
!!! GTGGTTTTGTTGGGAGTGAT+TGG - Chr1:31223154-31223173 None:intergenic 45.0%
AGGGAGAGGGAAGAGGATAA+AGG + Chr1:31223793-31223812 MsG0180002021.01.T01:CDS 50.0%
AGTCGAAGGTTGTGTCTCTC+AGG + Chr1:31223367-31223386 MsG0180002021.01.T01:CDS 50.0%
ATTGGGATTCGAGGGGTTTG+AGG - Chr1:31223328-31223347 None:intergenic 50.0%
CCTAAACTTGGGGTCACAGA+AGG - Chr1:31223728-31223747 None:intergenic 50.0%
CCTTCTGTGACCCCAAGTTT+AGG + Chr1:31223725-31223744 MsG0180002021.01.T01:CDS 50.0%
GGGAGTGATTGGAAGGTGAT+GGG - Chr1:31223143-31223162 None:intergenic 50.0%
TGAAGGGAAGTGGATGGAAG+TGG - Chr1:31223200-31223219 None:intergenic 50.0%
TGGGAGTGATTGGAAGGTGA+TGG - Chr1:31223144-31223163 None:intergenic 50.0%
! ATGGGTTGAAGGGAAGTGGA+TGG - Chr1:31223206-31223225 None:intergenic 50.0%
! CTCGCTGCTTTACTCGTTCA+AGG + Chr1:31223467-31223486 MsG0180002021.01.T01:CDS 50.0%
! CTGGACATGCTGGTGTTAGA+GGG + Chr1:31223879-31223898 MsG0180002021.01.T01:CDS 50.0%
! CTTTGGAGGGAGTTCTTCGA+TGG - Chr1:31223225-31223244 None:intergenic 50.0%
! CTTTGGGTTCTTGCACGGAT+TGG - Chr1:31223271-31223290 None:intergenic 50.0%
!! CATCCTTCACCGACTTCAGA+AGG - Chr1:31224052-31224071 None:intergenic 50.0%
!! GATGATGATGATGGTGGTGG+TGG - Chr1:31223173-31223192 None:intergenic 50.0%
!! GGAGTTCTTCGATGGGTTGA+AGG - Chr1:31223217-31223236 None:intergenic 50.0%
!! GTTCTTGCACGGATTGGAAG+AGG - Chr1:31223265-31223284 None:intergenic 50.0%
!! TTCGATGGGTTGAAGGGAAG+TGG - Chr1:31223210-31223229 None:intergenic 50.0%
!!! GATGGTGGTGGTGGTTTTGT+TGG - Chr1:31223164-31223183 None:intergenic 50.0%
AATTGGGAGGGAGAGGGAAG+AGG + Chr1:31223786-31223805 MsG0180002021.01.T01:CDS 55.0%
GAGTAAAGCAGCGAGCCCTT+TGG - Chr1:31223462-31223481 None:intergenic 55.0%
! GCTGGACATGCTGGTGTTAG+AGG + Chr1:31223878-31223897 MsG0180002021.01.T01:CDS 55.0%
!! ACCGACTTCAGAAGGCGTCT+TGG - Chr1:31224044-31224063 None:intergenic 55.0%
!! ACGCCTTCTGAAGTCGGTGA+AGG + Chr1:31224046-31224065 MsG0180002021.01.T01:CDS 55.0%
!! GCCAAGACGCCTTCTGAAGT+CGG + Chr1:31224040-31224059 MsG0180002021.01.T01:CDS 55.0%
GGTTTGGGTCCGAGCCTACT+TGG + Chr1:31223388-31223407 MsG0180002021.01.T01:CDS 60.0%
TGGGTCCGAGCCTACTTGGA+TGG + Chr1:31223392-31223411 MsG0180002021.01.T01:CDS 60.0%
! GCTGGTGTTAGAGGGAGCGA+TGG + Chr1:31223887-31223906 MsG0180002021.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 31223011 31224072 31223011 ID=MsG0180002021.01;Name=MsG0180002021.01
Chr1 mRNA 31223011 31224072 31223011 ID=MsG0180002021.01.T01;Parent=MsG0180002021.01;Name=MsG0180002021.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|353
Chr1 exon 31223011 31224072 31223011 ID=MsG0180002021.01.T01:exon:42912;Parent=MsG0180002021.01.T01
Chr1 CDS 31223011 31224072 31223011 ID=MsG0180002021.01.T01:cds;Parent=MsG0180002021.01.T01
Gene Sequence

>MsG0180002021.01.T01

ATGATGTCCACCAATTCCCTTTCTTCATGTTCATTTCGATTATTCACAACCAAATTCTCACTTTCCCTCTTCAACAAAAATAACTCTAATTTCTTCATTAAACCCACAAACACCCTCTTCTCTTTCAAACCCATCACCTTCCAATCACTCCCAACAAAACCACCACCACCATCATCATCATCATCACCACTTCCATCCACTTCCCTTCAACCCATCGAAGAACTCCCTCCAAAGCTTCAAGAAATCGTAAACCTCTTCCAATCCGTGCAAGAACCCAAAGCCAAATACGAACAGCTTCTCTTCTACGGCAAAAACCTCAAACCCCTCGAATCCCAATTTAAAACTAAAGACAACAAAGTCGAAGGTTGTGTCTCTCAGGTTTGGGTCCGAGCCTACTTGGATGGTGAAAGAAACGTTGTCTATGAAGCTGATTCGGATTCTGTTCTCACCAAAGGGCTCGCTGCTTTACTCGTTCAAGGCTTTTCAGGTCGACCCGTTAATGAAATTATCCAGGTCACACCCGATTTTGTAATGCATCTTGGGTTGCAACAGAGTTTAACCCCTTCTAGAAATAATGGGTTTTTGAATATGCTCAAATTAATGCAGAAAAAAGCACTTATGCTTTATGTGGAAGCTGAAAAGGGTACTTCTGAATCTGACTCAATTGGAAATTCTGATTTCAAAAATGATAGCTTTGTTGAGAATTCAAGTGGCCCTTCTGTGACCCCAAGTTTAGGTGTTGATTTTGGTTCCGAGGTTGATGACGAGAATGTTGAATTGGGAGGGAGAGGGAAGAGGATAAAGGAAAAGCTTGAAAAGGAACTTCAGCCTATTGAGTTGGAAGTTGAAGATGTGTCTTATCAACATGCTGGACATGCTGGTGTTAGAGGGAGCGATGGTGAGACACATTTCAATGTTAAAGTGGTTTCTAAAGAGTTTCAAGGGAAGAGTTTGGTTAAGAGGCATAGGCTTATTTATAGCTTGCTTCAAGATGAGTTGGATTCTGGACTTCATGCTTTGTCTATTGTTGCCAAGACGCCTTCTGAAGTCGGTGAAGGATGA

Protein sequence

>MsG0180002021.01.T01

MMSTNSLSSCSFRLFTTKFSLSLFNKNNSNFFIKPTNTLFSFKPITFQSLPTKPPPPSSSSSPLPSTSLQPIEELPPKLQEIVNLFQSVQEPKAKYEQLLFYGKNLKPLESQFKTKDNKVEGCVSQVWVRAYLDGERNVVYEADSDSVLTKGLAALLVQGFSGRPVNEIIQVTPDFVMHLGLQQSLTPSRNNGFLNMLKLMQKKALMLYVEAEKGTSESDSIGNSDFKNDSFVENSSGPSVTPSLGVDFGSEVDDENVELGGRGKRIKEKLEKELQPIELEVEDVSYQHAGHAGVRGSDGETHFNVKVVSKEFQGKSLVKRHRLIYSLLQDELDSGLHALSIVAKTPSEVGEG*