AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0639420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639420 MtrunA17_Chr4g0028521 83.333 144 5 1 1 125 1 144 3.36e-81 234
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639420 AT3G45050.2 55.882 136 39 2 11 125 23 158 1.18e-42 138
Msa0639420 AT3G45050.3 55.882 136 39 2 11 125 23 158 1.18e-42 138
Msa0639420 AT3G45050.4 55.882 136 39 2 11 125 23 158 1.18e-42 138
Msa0639420 AT3G45050.1 49.541 109 34 2 10 97 22 130 1.08e-24 91.7

Find 34 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGTATCCTTCACCTTTGC+AGG 0.266782 4_3:+35267661 None:intergenic
GGTAAGCAGCGAAGTGATAT+TGG 0.298796 4_3:+35270074 None:intergenic
GTGCAGTAGCTCCACTTCTT+TGG 0.304778 4_3:+35267479 None:intergenic
TAACAAGACAGTTATCTAAA+TGG 0.319672 4_3:-35270114 Msa0639420:exon
TCTTGATCCATTCCACTTGA+AGG 0.374765 4_3:-35267293 Msa0639420:three_prime_UTR
TGTGAAGCTTGTGGAGGTTC+TGG 0.380958 4_3:-35267695 Msa0639420:CDS
TACTGCACAAAATGCTCTTC+TGG 0.383793 4_3:-35267464 Msa0639420:CDS
TATGAACTAAATCTAGTGAT+TGG 0.396959 4_3:-35267336 Msa0639420:three_prime_UTR
GTAAGCAGCGAAGTGATATT+GGG 0.423565 4_3:+35270075 None:intergenic
GTTCTGTTCTCTCCACCAAC+TGG 0.444180 4_3:+35270138 None:intergenic
TCTACAGTAAAATTCATTGA+TGG 0.463932 4_3:+35267150 None:intergenic
ACTAAATCTAGTGATTGGTT+AGG 0.471718 4_3:-35267331 Msa0639420:three_prime_UTR
GCCACTGAAACTGCAGTCTC+AGG 0.488784 4_3:+35268732 None:intergenic
TATCCTTCACCTTTGCAGGC+TGG 0.492824 4_3:+35267665 None:intergenic
AAACATGGCAACTCGATTCA+CGG 0.496179 4_3:-35267588 Msa0639420:CDS
TAAAGGATAAGAAAGCAGAA+AGG 0.497284 4_3:-35270164 Msa0639420:five_prime_UTR
AAAGGATAAGAAAGCAGAAA+GGG 0.506530 4_3:-35270163 Msa0639420:five_prime_UTR
TGAAGTCACAATTGCAAACA+AGG 0.519947 4_3:-35268782 Msa0639420:CDS
GCAGAAAGGGTACCAGTTGG+TGG 0.523994 4_3:-35270150 Msa0639420:five_prime_UTR
CTCAGGCAGTGCCGATGAGA+CGG 0.537722 4_3:+35268749 None:intergenic
ACACCAGACTTCCAAAGAAG+TGG 0.545200 4_3:-35267490 Msa0639420:intron
ATCTGAAGAAAGTGCTGAGA+AGG 0.545376 4_3:-35267627 Msa0639420:CDS
GAGATCAGTCGCCGTCTCAT+CGG 0.553716 4_3:-35268760 Msa0639420:CDS
TGTTCAACATGTGGTGGAAG+TGG 0.555191 4_3:-35267434 Msa0639420:CDS
TGGCAACTCGATTCACGGAT+GGG 0.558434 4_3:-35267583 Msa0639420:intron
GCCTGAGACTGCAGTTTCAG+TGG 0.561066 4_3:-35268733 Msa0639420:CDS
TGTCCAGCCTGCAAAGGTGA+AGG 0.582605 4_3:-35267668 Msa0639420:CDS
ATGGCAACTCGATTCACGGA+TGG 0.587327 4_3:-35267584 Msa0639420:CDS
TTCAAAGAATGTGAAGCTTG+TGG 0.595609 4_3:-35267704 Msa0639420:CDS
GGTATATGTCCAGCCTGCAA+AGG 0.614856 4_3:-35267674 Msa0639420:CDS
AAAGAATGTGAAGCTTGTGG+AGG 0.628825 4_3:-35267701 Msa0639420:CDS
GGCAGAAGCTGTTCAACATG+TGG 0.666387 4_3:-35267443 Msa0639420:CDS
AAAGCAGAAAGGGTACCAGT+TGG 0.675605 4_3:-35270153 Msa0639420:five_prime_UTR
AGAAGCTGTTCAACATGTGG+TGG 0.676707 4_3:-35267440 Msa0639420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTAAAAAAAAAAAATCAT+TGG - chr4_3:35268161-35268180 Msa0639420:intron 10.0%
!! AAATAAAAAATTTAGAAGAA+AGG + chr4_3:35269799-35269818 None:intergenic 10.0%
!!! TAATTATGGTAACTTAATTT+TGG + chr4_3:35267575-35267594 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr4_3:35268833-35268852 Msa0639420:intron 15.0%
!! CAATTAAATCATATTAAGAA+TGG + chr4_3:35269577-35269596 None:intergenic 15.0%
!!! ATTATTTTTTTGACTGAATA+CGG - chr4_3:35270149-35270168 Msa0639420:five_prime_UTR 15.0%
!!! AAGCTTTATGAAATTTTAGT+TGG + chr4_3:35267366-35267385 None:intergenic 20.0%
!! TAAAATTTCATAAAGCTTAG+TGG - chr4_3:35267368-35267387 Msa0639420:three_prime_UTR 20.0%
!!! TTTTTAACATAGGAATGAAT+TGG + chr4_3:35267467-35267486 None:intergenic 20.0%
!!! ACTATGATGATTTTTAACAT+AGG + chr4_3:35267477-35267496 None:intergenic 20.0%
!!! CAATGATTAAGTTTTACTAT+AGG + chr4_3:35268022-35268041 None:intergenic 20.0%
!! CTATAGTAAAACTTAATCAT+TGG - chr4_3:35268020-35268039 Msa0639420:intron 20.0%
!!! AAAAGATTTTGTAGAATTTG+AGG - chr4_3:35268268-35268287 Msa0639420:intron 20.0%
!! TTGATGTTGTAAAATGAAAA+GGG - chr4_3:35268491-35268510 Msa0639420:intron 20.0%
!! CAGGTAATAATTTAAGAAAA+CGG + chr4_3:35269233-35269252 None:intergenic 20.0%
!!! AATAATTTTTTTTTTGGTGG+TGG + chr4_3:35269329-35269348 None:intergenic 20.0%
!!! GGTAATAATTTTTTTTTTGG+TGG + chr4_3:35269332-35269351 None:intergenic 20.0%
!!! GCAGGTAATAATTTTTTTTT+TGG + chr4_3:35269335-35269354 None:intergenic 20.0%
!! ATAGTTTCACATGAAAAATT+TGG + chr4_3:35269604-35269623 None:intergenic 20.0%
!! AAGAAAACTATCTAAAAACA+TGG - chr4_3:35269736-35269755 Msa0639420:intron 20.0%
!! TACACTTGCAACAATTTTAA+AGG - chr4_3:35267158-35267177 Msa0639420:three_prime_UTR 25.0%
! TAACAAGACAGTTATCTAAA+TGG - chr4_3:35267225-35267244 Msa0639420:three_prime_UTR 25.0%
! TAAATTGAAATCTCACTTTG+AGG + chr4_3:35267289-35267308 None:intergenic 25.0%
!!! ATGTGGTTTTTACTTTTTAC+TGG - chr4_3:35267411-35267430 Msa0639420:exon 25.0%
!!! TGTGGTTTTTACTTTTTACT+GGG - chr4_3:35267412-35267431 Msa0639420:exon 25.0%
!!! ACTGTTCTGAAAATTAATGA+AGG + chr4_3:35267518-35267537 None:intergenic 25.0%
!! TCATTAATTTTCAGAACAGT+AGG - chr4_3:35267518-35267537 Msa0639420:intron 25.0%
! GTGTTTGAATTAAATGAGTT+TGG - chr4_3:35267699-35267718 Msa0639420:CDS 25.0%
! TTGAATTAAATGAGTTTGGT+AGG - chr4_3:35267703-35267722 Msa0639420:CDS 25.0%
! ATGATTTATGACTAGACATT+TGG + chr4_3:35267882-35267901 None:intergenic 25.0%
! TATGTTTATGACTAGACATT+TGG + chr4_3:35267930-35267949 None:intergenic 25.0%
! TATTCTAATACTAGTAAAGC+TGG + chr4_3:35267979-35267998 None:intergenic 25.0%
! CTTTACTAGTATTAGAATAG+TGG - chr4_3:35267980-35267999 Msa0639420:intron 25.0%
!! CTTTGATGATAAGTTTCAAA+AGG - chr4_3:35268300-35268319 Msa0639420:intron 25.0%
! TACCTCATAATTTAAACTGA+GGG + chr4_3:35268387-35268406 None:intergenic 25.0%
! TTACCTCATAATTTAAACTG+AGG + chr4_3:35268388-35268407 None:intergenic 25.0%
! GTTGATGTTGTAAAATGAAA+AGG - chr4_3:35268490-35268509 Msa0639420:intron 25.0%
! TCTCAGATTATTAACAATGT+TGG - chr4_3:35269035-35269054 Msa0639420:intron 25.0%
! ACATACACTAATATCAATCA+CGG + chr4_3:35269063-35269082 None:intergenic 25.0%
!! AAGATTTTCATGTTCTTGTT+TGG + chr4_3:35269118-35269137 None:intergenic 25.0%
!!! TGTAGTTTTGCTCTTATATA+CGG - chr4_3:35269939-35269958 Msa0639420:intron 25.0%
! TATGAACTAAATCTAGTGAT+TGG - chr4_3:35270003-35270022 Msa0639420:intron 25.0%
!! ACATAAAATTTTCCTTCAAG+TGG + chr4_3:35270061-35270080 None:intergenic 25.0%
!! TGCAATGTATAGTATGTTTT+TGG - chr4_3:35270094-35270113 Msa0639420:CDS 25.0%
! TCTACAGTAAAATTCATTGA+TGG + chr4_3:35270192-35270211 None:intergenic 25.0%
TAAAGGATAAGAAAGCAGAA+AGG - chr4_3:35267175-35267194 Msa0639420:three_prime_UTR 30.0%
AAAGGATAAGAAAGCAGAAA+GGG - chr4_3:35267176-35267195 Msa0639420:three_prime_UTR 30.0%
ACAATACAAAGAAGGATGAT+TGG + chr4_3:35267319-35267338 None:intergenic 30.0%
!!! TAAAGCTTAGTGGTTAGTTT+TGG - chr4_3:35267378-35267397 Msa0639420:three_prime_UTR 30.0%
AAAATCATCATAGTCACGTT+AGG - chr4_3:35267483-35267502 Msa0639420:CDS 30.0%
! AATTTTCAGAACAGTAGGAT+TGG - chr4_3:35267523-35267542 Msa0639420:intron 30.0%
! TTTTCCAGCAGCATTAATTA+TGG + chr4_3:35267589-35267608 None:intergenic 30.0%
AATTAATGCTGCTGGAAAAT+AGG - chr4_3:35267590-35267609 Msa0639420:CDS 30.0%
GTCTTAATTTAACTCTTGTG+TGG - chr4_3:35267624-35267643 Msa0639420:CDS 30.0%
TCGTTCAGTAGTGAATAAAT+TGG - chr4_3:35267759-35267778 Msa0639420:intron 30.0%
ATCCCTCAGTTTAAATTATG+AGG - chr4_3:35268382-35268401 Msa0639420:intron 30.0%
CAATTTCATGTGAGAATAGT+CGG + chr4_3:35268414-35268433 None:intergenic 30.0%
CTGATACTAACAATAGAGAT+GGG + chr4_3:35268714-35268733 None:intergenic 30.0%
ACTGATACTAACAATAGAGA+TGG + chr4_3:35268715-35268734 None:intergenic 30.0%
ATGACATAATTCGATGTAAG+AGG + chr4_3:35268817-35268836 None:intergenic 30.0%
! ATGTTCTTGTTTGGAAAGTA+AGG + chr4_3:35269109-35269128 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG - chr4_3:35269284-35269303 Msa0639420:intron 30.0%
! ACTAAATCTAGTGATTGGTT+AGG - chr4_3:35270008-35270027 Msa0639420:intron 30.0%
! AAATTTTCCTTCAAGTGGAA+TGG + chr4_3:35270056-35270075 None:intergenic 30.0%
! ACAAAGAAGGATGATTGGTT+AGG + chr4_3:35267314-35267333 None:intergenic 35.0%
CTGCAAGTACAATACAAAGA+AGG + chr4_3:35267327-35267346 None:intergenic 35.0%
AACATAGGAATGAATTGGCA+CGG + chr4_3:35267462-35267481 None:intergenic 35.0%
GTTACCATAATTAATGCTGC+TGG - chr4_3:35267582-35267601 Msa0639420:intron 35.0%
ACTCTTGTGTGGTTTCTATA+TGG - chr4_3:35267635-35267654 Msa0639420:CDS 35.0%
TTGGAGTTCTTAAACTCACT+TGG - chr4_3:35268039-35268058 Msa0639420:intron 35.0%
TGGAGTTCTTAAACTCACTT+GGG - chr4_3:35268040-35268059 Msa0639420:intron 35.0%
!! TAAATTTAGGTGGGCTAGTT+TGG - chr4_3:35268136-35268155 Msa0639420:intron 35.0%
! TCTTCCATTTTCTATGCTAG+AGG + chr4_3:35268217-35268236 None:intergenic 35.0%
ATCAGTGGATCATTTGCTTA+GGG + chr4_3:35268448-35268467 None:intergenic 35.0%
TATCAGTGGATCATTTGCTT+AGG + chr4_3:35268449-35268468 None:intergenic 35.0%
GATCCACTGATAAGAACTTA+TGG - chr4_3:35268457-35268476 Msa0639420:intron 35.0%
TAGCCATAAGTTCTTATCAG+TGG + chr4_3:35268463-35268482 None:intergenic 35.0%
TGAAGTCACAATTGCAAACA+AGG - chr4_3:35268557-35268576 Msa0639420:intron 35.0%
TATAATGTAACCATGTGTGC+TGG + chr4_3:35269004-35269023 None:intergenic 35.0%
! TTCTTGTTTGGAAAGTAAGG+TGG + chr4_3:35269106-35269125 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr4_3:35269289-35269308 Msa0639420:intron 35.0%
!!! ATTTTTTTTTTGGTGGTGGC+CGG + chr4_3:35269325-35269344 None:intergenic 35.0%
AGCACAAACTAGCAACATAT+AGG - chr4_3:35269416-35269435 Msa0639420:intron 35.0%
TTCAAAGAATGTGAAGCTTG+TGG - chr4_3:35269635-35269654 Msa0639420:intron 35.0%
GTAAGCAGCGAAGTGATATT+GGG + chr4_3:35267267-35267286 None:intergenic 40.0%
TACTGGGCTGTTCTTTAGTT+TGG - chr4_3:35267428-35267447 Msa0639420:CDS 40.0%
CTTGTGTGGTTTCTATATGG+TGG - chr4_3:35267638-35267657 Msa0639420:CDS 40.0%
TGCTCTTTCCATCTCAAATG+CGG - chr4_3:35267789-35267808 Msa0639420:intron 40.0%
TACACAAACCGCATTTGAGA+TGG + chr4_3:35267800-35267819 None:intergenic 40.0%
TCAAATGCGGTTTGTGTACT+TGG - chr4_3:35267802-35267821 Msa0639420:intron 40.0%
CAAATGCGGTTTGTGTACTT+GGG - chr4_3:35267803-35267822 Msa0639420:intron 40.0%
GTTCTTAAACTCACTTGGGT+TGG - chr4_3:35268044-35268063 Msa0639420:intron 40.0%
ATCGAAATTGAGACCTTGAG+AGG + chr4_3:35268105-35268124 None:intergenic 40.0%
ATTCGACCCGGTGTAAATTT+AGG - chr4_3:35268123-35268142 Msa0639420:intron 40.0%
TAGCCCACCTAAATTTACAC+CGG + chr4_3:35268133-35268152 None:intergenic 40.0%
AGAGCAGCAATATAGGAACT+AGG + chr4_3:35268191-35268210 None:intergenic 40.0%
AGTTCCTATATTGCTGCTCT+AGG - chr4_3:35268191-35268210 Msa0639420:intron 40.0%
TAGGCCTCTAGCATAGAAAA+TGG - chr4_3:35268210-35268229 Msa0639420:intron 40.0%
TGTAAGAGGATCATTTGTGC+CGG + chr4_3:35268803-35268822 None:intergenic 40.0%
GTGTCTCTCTTCTACATAAG+TGG + chr4_3:35268950-35268969 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr4_3:35269290-35269309 Msa0639420:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG - chr4_3:35269291-35269310 Msa0639420:intron 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG + chr4_3:35269324-35269343 None:intergenic 40.0%
TGACACTAACATGTAGATGC+AGG + chr4_3:35269353-35269372 None:intergenic 40.0%
AAAGAATGTGAAGCTTGTGG+AGG - chr4_3:35269638-35269657 Msa0639420:intron 40.0%
!! ATCTGAAGAAAGTGCTGAGA+AGG - chr4_3:35269712-35269731 Msa0639420:intron 40.0%
AAACATGGCAACTCGATTCA+CGG - chr4_3:35269751-35269770 Msa0639420:intron 40.0%
TACTGCACAAAATGCTCTTC+TGG - chr4_3:35269875-35269894 Msa0639420:intron 40.0%
TCTTGATCCATTCCACTTGA+AGG - chr4_3:35270046-35270065 Msa0639420:intron 40.0%
!! AAAGCAGAAAGGGTACCAGT+TGG - chr4_3:35267186-35267205 Msa0639420:three_prime_UTR 45.0%
GGTAAGCAGCGAAGTGATAT+TGG + chr4_3:35267268-35267287 None:intergenic 45.0%
!! GTTTTGGTGTGCATGCAATG+TGG - chr4_3:35267394-35267413 Msa0639420:three_prime_UTR 45.0%
!! TGGGCTGTTCTTTAGTTTGG+TGG - chr4_3:35267431-35267450 Msa0639420:CDS 45.0%
! GTCTCAATTTCGATTCGACC+CGG - chr4_3:35268111-35268130 Msa0639420:intron 45.0%
GACCCGGTGTAAATTTAGGT+GGG - chr4_3:35268127-35268146 Msa0639420:intron 45.0%
AGCCCACCTAAATTTACACC+GGG + chr4_3:35268132-35268151 None:intergenic 45.0%
CAGTAGCAGCAACGTTTGTT+GGG - chr4_3:35268629-35268648 Msa0639420:intron 45.0%
! AGTAGCAGCAACGTTTGTTG+GGG - chr4_3:35268630-35268649 Msa0639420:intron 45.0%
GGATCTCTGTACAAGAAGAG+TGG + chr4_3:35268662-35268681 None:intergenic 45.0%
TCATCAGATTAAGCGTGTCC+TGG - chr4_3:35268752-35268771 Msa0639420:CDS 45.0%
ATACGTATTGTGTCCGACAC+CGG - chr4_3:35268781-35268800 Msa0639420:CDS 45.0%
ATGAAGCACAGTCTCAGACA+TGG + chr4_3:35268881-35268900 None:intergenic 45.0%
! TGTCTGAGACTGTGCTTCAT+AGG - chr4_3:35268881-35268900 Msa0639420:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr4_3:35269262-35269281 Msa0639420:intron 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG + chr4_3:35269323-35269342 None:intergenic 45.0%
GTTAGTGTCATGTGTCTCTG+TGG - chr4_3:35269363-35269382 Msa0639420:intron 45.0%
ACACCAGACTTCCAAAGAAG+TGG - chr4_3:35269849-35269868 Msa0639420:intron 45.0%
AGAAGCTGTTCAACATGTGG+TGG - chr4_3:35269899-35269918 Msa0639420:intron 45.0%
! TGTTCAACATGTGGTGGAAG+TGG - chr4_3:35269905-35269924 Msa0639420:intron 45.0%
GTTCTGTTCTCTCCACCAAC+TGG + chr4_3:35267204-35267223 None:intergenic 50.0%
GTGTACTTGGGAGCCTATCT+AGG - chr4_3:35267815-35267834 Msa0639420:intron 50.0%
TGGCTCAACGGAACCTAGAT+AGG + chr4_3:35267831-35267850 None:intergenic 50.0%
TGACCTGAGTGACTCGACAA+CGG + chr4_3:35267855-35267874 None:intergenic 50.0%
!! TTGGGTTGGCCTGATGATGT+TGG - chr4_3:35268058-35268077 Msa0639420:intron 50.0%
! TTGGCCTGATGATGTTGGCT+TGG - chr4_3:35268063-35268082 Msa0639420:intron 50.0%
!! TGGCCTGATGATGTTGGCTT+GGG - chr4_3:35268064-35268083 Msa0639420:intron 50.0%
!! ATGATGTTGGCTTGGGACCT+TGG - chr4_3:35268071-35268090 Msa0639420:intron 50.0%
! CTTGAGAGGAGCATACTCCA+AGG + chr4_3:35268091-35268110 None:intergenic 50.0%
CTTGGAGTATGCTCCTCTCA+AGG - chr4_3:35268089-35268108 Msa0639420:intron 50.0%
CGACCCGGTGTAAATTTAGG+TGG - chr4_3:35268126-35268145 Msa0639420:intron 50.0%
GAGGCCTAGAGCAGCAATAT+AGG + chr4_3:35268198-35268217 None:intergenic 50.0%
GCAGTAGCAGCAACGTTTGT+TGG - chr4_3:35268628-35268647 Msa0639420:intron 50.0%
! CTGTGTGGACTCGGAAGTTT+TGG + chr4_3:35268683-35268702 None:intergenic 50.0%
CAAAACTTCCGAGTCCACAC+AGG - chr4_3:35268681-35268700 Msa0639420:intron 50.0%
GTTACTGACCTGTGTGGACT+CGG + chr4_3:35268692-35268711 None:intergenic 50.0%
!! AGATGGGTTACTGACCTGTG+TGG + chr4_3:35268698-35268717 None:intergenic 50.0%
GATTAAGCGTGTCCTGGTGT+CGG - chr4_3:35268758-35268777 Msa0639420:CDS 50.0%
CACAATACGTATCCGACACC+AGG + chr4_3:35268773-35268792 None:intergenic 50.0%
! AGGATCATTTGTGCCGGTGT+CGG + chr4_3:35268797-35268816 None:intergenic 50.0%
! TGTAACCATGTGTGCTGGTG+TGG + chr4_3:35268999-35269018 None:intergenic 50.0%
TGTGAAGCTTGTGGAGGTTC+TGG - chr4_3:35269644-35269663 Msa0639420:intron 50.0%
GGTATATGTCCAGCCTGCAA+AGG - chr4_3:35269665-35269684 Msa0639420:intron 50.0%
TATCCTTCACCTTTGCAGGC+TGG + chr4_3:35269677-35269696 None:intergenic 50.0%
CACGTATCCTTCACCTTTGC+AGG + chr4_3:35269681-35269700 None:intergenic 50.0%
ATGGCAACTCGATTCACGGA+TGG - chr4_3:35269755-35269774 Msa0639420:intron 50.0%
TGGCAACTCGATTCACGGAT+GGG - chr4_3:35269756-35269775 Msa0639420:intron 50.0%
! GCTCCACTTCTTTGGAAGTC+TGG + chr4_3:35269855-35269874 None:intergenic 50.0%
GTGCAGTAGCTCCACTTCTT+TGG + chr4_3:35269863-35269882 None:intergenic 50.0%
GGCAGAAGCTGTTCAACATG+TGG - chr4_3:35269896-35269915 Msa0639420:intron 50.0%
!! GCAGAAAGGGTACCAGTTGG+TGG - chr4_3:35267189-35267208 Msa0639420:three_prime_UTR 55.0%
GACCTGAGTGACTCGACAAC+GGG + chr4_3:35267854-35267873 None:intergenic 55.0%
GGTCCCAAGCCAACATCATC+AGG + chr4_3:35268070-35268089 None:intergenic 55.0%
GAGATCAGTCGCCGTCTCAT+CGG - chr4_3:35268579-35268598 Msa0639420:intron 55.0%
GCCTGAGACTGCAGTTTCAG+TGG - chr4_3:35268606-35268625 Msa0639420:intron 55.0%
GCCACTGAAACTGCAGTCTC+AGG + chr4_3:35268610-35268629 None:intergenic 55.0%
! TGTGTGCTGGTGTGGTACAC+TGG + chr4_3:35268991-35269010 None:intergenic 55.0%
GTGTACCACACCAGCACACA+TGG - chr4_3:35268991-35269010 Msa0639420:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr4_3:35269260-35269279 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr4_3:35269257-35269276 Msa0639420:intron 55.0%
GTTGCGTCACGTGTAGCAGT+TGG + chr4_3:35269470-35269489 None:intergenic 55.0%
CTGCTACACGTGACGCAACT+CGG - chr4_3:35269471-35269490 Msa0639420:intron 55.0%
TGTCCAGCCTGCAAAGGTGA+AGG - chr4_3:35269671-35269690 Msa0639420:intron 55.0%
CTCGACAACGGGTGGCTCAA+CGG + chr4_3:35267843-35267862 None:intergenic 60.0%
CTGAGTGACTCGACAACGGG+TGG + chr4_3:35267851-35267870 None:intergenic 60.0%
CACCCGTTGTCGAGTCACTC+AGG - chr4_3:35267849-35267868 Msa0639420:intron 60.0%
!! CTCAGGCAGTGCCGATGAGA+CGG + chr4_3:35268593-35268612 None:intergenic 60.0%
GCTAAGCTCACGAGGACAGC+AGG + chr4_3:35269252-35269271 None:intergenic 60.0%
AAGGTCCGGGGTTCGATCCC+CGG - chr4_3:35269303-35269322 Msa0639420:intron 65.0%
GGTGGCCGGGGATCGAACCC+CGG + chr4_3:35269311-35269330 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 35267135 35270226 35267135 ID=Msa0639420;Name=Msa0639420
chr4_3 mRNA 35267135 35270226 35267135 ID=Msa0639420-mRNA-1;Parent=Msa0639420;Name=Msa0639420-mRNA-1;_AED=0.22;_eAED=0.22;_QI=109|0.66|0.75|1|0|0|4|283|125
chr4_3 exon 35267135 35267505 35267135 ID=Msa0639420-mRNA-1:exon:8288;Parent=Msa0639420-mRNA-1
chr4_3 exon 35267584 35267732 35267584 ID=Msa0639420-mRNA-1:exon:8287;Parent=Msa0639420-mRNA-1
chr4_3 exon 35268716 35268807 35268716 ID=Msa0639420-mRNA-1:exon:8286;Parent=Msa0639420-mRNA-1
chr4_3 exon 35270069 35270226 35270069 ID=Msa0639420-mRNA-1:exon:8285;Parent=Msa0639420-mRNA-1
chr4_3 five_prime_UTR 35270118 35270226 35270118 ID=Msa0639420-mRNA-1:five_prime_utr;Parent=Msa0639420-mRNA-1
chr4_3 CDS 35270069 35270117 35270069 ID=Msa0639420-mRNA-1:cds;Parent=Msa0639420-mRNA-1
chr4_3 CDS 35268716 35268807 35268716 ID=Msa0639420-mRNA-1:cds;Parent=Msa0639420-mRNA-1
chr4_3 CDS 35267584 35267732 35267584 ID=Msa0639420-mRNA-1:cds;Parent=Msa0639420-mRNA-1
chr4_3 CDS 35267418 35267505 35267418 ID=Msa0639420-mRNA-1:cds;Parent=Msa0639420-mRNA-1
chr4_3 three_prime_UTR 35267135 35267417 35267135 ID=Msa0639420-mRNA-1:three_prime_utr;Parent=Msa0639420-mRNA-1
Gene Sequence

>Msa0639420

ATGGATGTAGTTGTACAGCGCCCAATATCACTTCGCTGCTTACCTCAAAATGTGAAGTCACAATTGCAAACAAGGAGATCAGTCGCCGTCTCATCGGCACTGCCTGAGACTGCAGTTTCAGTGGCAGTAGCAGCAACGTTTATTGAATTCAAAGAATGTGAAGCTTGTGGAGGTTCTGGTATATGTCCAGCCTGCAAAGGTGAAGGATACGTGCTTAAAAAACGATCTGAAGAAAGTGCTGAGAAGGCAAGAAAACTATCTAAAAACATGGCAACTCGATTCACGGATGGACTTCCAAAGAAGTGGAGCTACTGCACAAAATGCTCTTCTGGCAGAAGCTGTTCAACATGTGGTGGAAGTGGAAAGCTAAACTTGTAG

Protein sequence

>Msa0639420

MDVVVQRPISLRCLPQNVKSQLQTRRSVAVSSALPETAVSVAVAATFIEFKECEACGGSGICPACKGEGYVLKKRSEESAEKARKLSKNMATRFTDGLPKKWSYCTKCSSGRSCSTCGGSGKLNL*