AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0449030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449030 MtrunA17_Chr3g0092041 98.901 182 2 0 40 221 1 182 2.21e-135 377
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449030 AT1G18730.1 58.192 177 71 2 40 215 1 175 1.51e-66 203
Msa0449030 AT1G18730.3 57.627 177 71 2 40 215 1 174 2.49e-66 202
Msa0449030 AT1G18730.5 70.866 127 36 1 90 215 2 128 5.75e-63 192
Msa0449030 AT1G18730.2 52.518 139 62 2 40 177 1 136 9.20e-46 149
Msa0449030 AT1G18730.4 52.518 139 62 2 40 177 1 136 1.17e-45 149

Find 66 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGGTCCTTATGATATA+TGG 0.197318 3_3:-31262824 None:intergenic
GTTTGGGGAGTCTTATTCTT+TGG 0.250564 3_3:+31263912 Msa0449030:CDS
GTACATAATGTTCACTGTTT+GGG 0.251834 3_3:+31263896 Msa0449030:CDS
TGTGCATGCTTCCAACAAAT+TGG 0.273977 3_3:-31262753 None:intergenic
TATGTTTCTGAATCGTAATA+TGG 0.282914 3_3:-31264060 None:intergenic
TGGTCAATTGATGGACTAAA+AGG 0.295742 3_3:-31265683 None:intergenic
GGTTATGCAGCAAGAGGTTA+TGG 0.323069 3_3:+31265522 Msa0449030:intron
GGTACATAATGTTCACTGTT+TGG 0.337904 3_3:+31263895 Msa0449030:CDS
CTCACGCCACAGGGCTTCTC+TGG 0.342613 3_3:-31265554 None:intergenic
GAGGAGATGGCACTGGAAAC+TGG 0.350136 3_3:+31264094 Msa0449030:CDS
TTATAACCGAGAAAACAATT+TGG 0.357393 3_3:+31263600 Msa0449030:CDS
ATTGCCATCAGTGGAATATC+TGG 0.357533 3_3:-31263545 None:intergenic
CCTCTTTCACAGGTCATTGC+AGG 0.357586 3_3:+31263094 Msa0449030:CDS
ATTACGATTCAGAAACATAT+AGG 0.360570 3_3:+31264064 Msa0449030:CDS
TTACGATTCAGAAACATATA+GGG 0.363321 3_3:+31264065 Msa0449030:CDS
GGCAATTCTAGTAGAACAAT+TGG 0.375396 3_3:+31263562 Msa0449030:CDS
AACAAAACGATTTACAAGAT+TGG 0.386067 3_3:+31262948 Msa0449030:CDS
ACCGCGCAAATCCAATTTGT+TGG 0.399144 3_3:+31262742 None:intergenic
TTTGTAAATAAGGTGTTAGA+TGG 0.415388 3_3:+31263482 Msa0449030:intron
ACCATGGCCGAAGCTATCAT+TGG 0.453740 3_3:+31262883 Msa0449030:CDS
GGTATCACTTGGTCAATTGA+TGG 0.459374 3_3:-31265692 None:intergenic
ATGTTTCTGAATCGTAATAT+GGG 0.462762 3_3:-31264059 None:intergenic
TTATGGTCCTTATGATATAT+GGG 0.463330 3_3:-31262823 None:intergenic
ATCCCATCCCATATATCATA+AGG 0.468115 3_3:+31262816 Msa0449030:CDS
ACTTGAAGAAGCAGCAAAGA+AGG 0.487076 3_3:+31265621 Msa0449030:CDS
CTTATTCTTTGGTTCCATGA+AGG 0.490823 3_3:+31263923 Msa0449030:CDS
AATGTACTGTTATTAAACTA+CGG 0.491484 3_3:+31265768 Msa0449030:three_prime_UTR
CACAATATAAATCAATGAGC+AGG 0.505811 3_3:+31265813 Msa0449030:three_prime_UTR
GGAGATGGAGGAGATGGCAC+TGG 0.510554 3_3:+31264087 Msa0449030:CDS
CAATCAACTCCTCACGCCAC+AGG 0.510782 3_3:-31265564 None:intergenic
TGAAAGAGGGTAGAGTTTGA+AGG 0.517301 3_3:-31263080 None:intergenic
CATAATAATGAGGTATCACT+TGG 0.523201 3_3:-31265703 None:intergenic
TCAGAAACATATAGGGGAGA+TGG 0.524239 3_3:+31264072 Msa0449030:CDS
GCATCTATGTGCAAAGTGAA+TGG 0.524899 3_3:+31263518 Msa0449030:CDS
TTTAATCCTTTGCAGACGCT+TGG 0.529767 3_3:+31263874 Msa0449030:intron
GGTGAAACCAATGATAGCTT+CGG 0.532364 3_3:-31262890 None:intergenic
ATGAATATATGAATTGAAAA+CGG 0.534351 3_3:-31262911 None:intergenic
ACCAATGATAGCTTCGGCCA+TGG 0.534984 3_3:-31262884 None:intergenic
CAAACTCTACCCTCTTTCAC+AGG 0.545894 3_3:+31263084 Msa0449030:CDS
GGTCCTTATGATATATGGGA+TGG 0.548973 3_3:-31262819 None:intergenic
TACATAATGTTCACTGTTTG+GGG 0.555106 3_3:+31263897 Msa0449030:CDS
GTAGAGTTTGAAGGGTGCCT+AGG 0.557136 3_3:-31263071 None:intergenic
CCTGCAATGACCTGTGAAAG+AGG 0.564483 3_3:-31263094 None:intergenic
CAGAGAAGCCCTGTGGCGTG+AGG 0.566266 3_3:+31265555 Msa0449030:CDS
GTCCTTATGATATATGGGAT+GGG 0.567129 3_3:-31262818 None:intergenic
TATGTATATACATAATAATG+AGG 0.569260 3_3:-31265713 None:intergenic
GGAAGCATGCACATACTTGA+AGG 0.569486 3_3:+31262763 Msa0449030:exon
TTTACCAGATATTCCACTGA+TGG 0.571820 3_3:+31263541 Msa0449030:CDS
TATAGGGGAGATGGAGGAGA+TGG 0.574917 3_3:+31264081 Msa0449030:CDS
GCAAGAGGTTATGGAAGCAG+AGG 0.578491 3_3:+31265531 Msa0449030:intron
ATATATGGGATGGGATAGAG+TGG 0.583708 3_3:-31262809 None:intergenic
TCTACTAGAATTGCCATCAG+TGG 0.584764 3_3:-31263554 None:intergenic
GAAACATATAGGGGAGATGG+AGG 0.597630 3_3:+31264075 Msa0449030:CDS
GAAAGAGGGTAGAGTTTGAA+GGG 0.602642 3_3:-31263079 None:intergenic
AGAAGCAGCAAAGAAGGAGG+AGG 0.609366 3_3:+31265627 Msa0449030:CDS
AATCAACTCCTCACGCCACA+GGG 0.615196 3_3:-31265563 None:intergenic
CTGCAATGACCTGTGAAAGA+GGG 0.628798 3_3:-31263093 None:intergenic
TGGAAACTGGATATATGAGA+AGG 0.633434 3_3:+31264107 Msa0449030:CDS
ATTCTAGTAGAACAATTGGA+AGG 0.633447 3_3:+31263566 Msa0449030:CDS
TCCAACAAATTGGATTTGCG+CGG 0.637195 3_3:-31262743 None:intergenic
GAAGCATGCACATACTTGAA+GGG 0.648852 3_3:+31262764 Msa0449030:exon
TACGATTCAGAAACATATAG+GGG 0.649546 3_3:+31264066 Msa0449030:CDS
GTGGCGTGAGGAGTTGATTG+AGG 0.650121 3_3:+31265567 Msa0449030:CDS
TGAAGAAGCAGCAAAGAAGG+AGG 0.658434 3_3:+31265624 Msa0449030:CDS
CAGAGGCCAGAGAAGCCCTG+TGG 0.664634 3_3:+31265548 Msa0449030:CDS
GCATGCACATACTTGAAGGG+TGG 0.681802 3_3:+31262767 Msa0449030:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATATAAACTGAAAA+TGG - chr3_3:31263450-31263469 None:intergenic 10.0%
!!! ATTTTCAGTTTATATTTTAA+TGG + chr3_3:31263449-31263468 Msa0449030:intron 10.0%
!!! TTTTAAATTTGATTGTTTAT+TGG + chr3_3:31263846-31263865 Msa0449030:intron 10.0%
!!! CAAGTTTTTTTTTTTTTTTA+GGG - chr3_3:31264889-31264908 None:intergenic 10.0%
!!! TCAAGTTTTTTTTTTTTTTT+AGG - chr3_3:31264890-31264909 None:intergenic 10.0%
!! ATGAATATATGAATTGAAAA+CGG - chr3_3:31262914-31262933 None:intergenic 15.0%
!!! ACAAATTTTTGCTTATATTT+TGG + chr3_3:31263760-31263779 Msa0449030:intron 15.0%
!!! CAAATTTTTGCTTATATTTT+GGG + chr3_3:31263761-31263780 Msa0449030:intron 15.0%
!!! AATAATACATTTTTGACAAA+GGG - chr3_3:31263807-31263826 None:intergenic 15.0%
!!! AAATAATACATTTTTGACAA+AGG - chr3_3:31263808-31263827 None:intergenic 15.0%
!!! TTTGTTATATGATTTTATGT+TGG + chr3_3:31263989-31264008 Msa0449030:intron 15.0%
!!! GATATTTTTTTCATTGATTT+AGG - chr3_3:31264716-31264735 None:intergenic 15.0%
!!! AAAATATTGAGTTTAGAATT+TGG - chr3_3:31265093-31265112 None:intergenic 15.0%
!!! GTTTTTTTTTAAAAGCAAAT+TGG + chr3_3:31265325-31265344 Msa0449030:intron 15.0%
!!! ATTTAAAATGCAAAATATCA+TGG - chr3_3:31265487-31265506 None:intergenic 15.0%
!!! TTAAATTGTAGCTATTTTTA+TGG + chr3_3:31265501-31265520 Msa0449030:intron 15.0%
!! TATGTATATACATAATAATG+AGG - chr3_3:31265716-31265735 None:intergenic 15.0%
!!! CTAATCTTGTAATTTTTTTA+AGG + chr3_3:31265888-31265907 Msa0449030:three_prime_UTR 15.0%
!! AAAATGGAATGAAAATGATA+AGG - chr3_3:31262983-31263002 None:intergenic 20.0%
!!! TTATCAATCTTTAATTTCCA+TGG + chr3_3:31263242-31263261 Msa0449030:intron 20.0%
!! TAATTTCCATGGATAATTAT+CGG + chr3_3:31263253-31263272 Msa0449030:intron 20.0%
!! TCTCTTTGTATTTGTAAATA+AGG + chr3_3:31263472-31263491 Msa0449030:intron 20.0%
!! TGAACAAAAGTTAATGTATT+TGG - chr3_3:31263741-31263760 None:intergenic 20.0%
!! TAACATGTTTAACATGATTT+AGG + chr3_3:31264035-31264054 Msa0449030:intron 20.0%
!!! TAGATACTATACTTTGAAAA+GGG + chr3_3:31264292-31264311 Msa0449030:intron 20.0%
!! AAAAAAATATCGACATCATT+TGG + chr3_3:31264725-31264744 Msa0449030:intron 20.0%
!!! TTTTTTTTGTTACAACTTAG+AGG - chr3_3:31264961-31264980 None:intergenic 20.0%
!! TATACATCAAATATTAGAAG+AGG + chr3_3:31265247-31265266 Msa0449030:intron 20.0%
!!! TTTTCTTAAAATAAATGGAC+AGG - chr3_3:31265399-31265418 None:intergenic 20.0%
!!! AAGGCTTTTCTTAAAATAAA+TGG - chr3_3:31265404-31265423 None:intergenic 20.0%
!!! GGAATTTAAACATGTATTTT+AGG - chr3_3:31265430-31265449 None:intergenic 20.0%
!! AATGTACTGTTATTAAACTA+CGG + chr3_3:31265768-31265787 Msa0449030:three_prime_UTR 20.0%
! TTATGGTCCTTATGATATAT+GGG - chr3_3:31262826-31262845 None:intergenic 25.0%
! ATTATGGTCCTTATGATATA+TGG - chr3_3:31262827-31262846 None:intergenic 25.0%
! GTAAAAAGGAGTTGAAATTA+TGG - chr3_3:31262843-31262862 None:intergenic 25.0%
! AACAAAACGATTTACAAGAT+TGG + chr3_3:31262948-31262967 Msa0449030:CDS 25.0%
! GTGAATCAAAAGAGATAAAA+TGG - chr3_3:31262999-31263018 None:intergenic 25.0%
! AATTTCCATGGATAATTATC+GGG + chr3_3:31263254-31263273 Msa0449030:intron 25.0%
! ACTAGAAGAAGTTTAAATGT+CGG + chr3_3:31263310-31263329 Msa0449030:intron 25.0%
!!! AGTTTTCTGCTAGTTTTTAT+AGG + chr3_3:31263414-31263433 Msa0449030:intron 25.0%
!! TTTGTAAATAAGGTGTTAGA+TGG + chr3_3:31263482-31263501 Msa0449030:intron 25.0%
! TTATAACCGAGAAAACAATT+TGG + chr3_3:31263600-31263619 Msa0449030:CDS 25.0%
!!! CTCATTTTTGCTTACATTTT+GGG - chr3_3:31263684-31263703 None:intergenic 25.0%
!!! ACTCATTTTTGCTTACATTT+TGG - chr3_3:31263685-31263704 None:intergenic 25.0%
!!! TTTTTGCTTATATTTTGGGA+CGG + chr3_3:31263765-31263784 Msa0449030:intron 25.0%
!! ATGTTTCTGAATCGTAATAT+GGG - chr3_3:31264062-31264081 None:intergenic 25.0%
!! TATGTTTCTGAATCGTAATA+TGG - chr3_3:31264063-31264082 None:intergenic 25.0%
! ATTACGATTCAGAAACATAT+AGG + chr3_3:31264064-31264083 Msa0449030:CDS 25.0%
! TTACGATTCAGAAACATATA+GGG + chr3_3:31264065-31264084 Msa0449030:CDS 25.0%
! CTTACTTTAGTATATCTACA+AGG - chr3_3:31264205-31264224 None:intergenic 25.0%
! TGTAGATATACTAAAGTAAG+AGG + chr3_3:31264205-31264224 Msa0449030:intron 25.0%
!! GTAGATACTATACTTTGAAA+AGG + chr3_3:31264291-31264310 Msa0449030:intron 25.0%
!!! ATACTTTGAAAAGGGATTTT+AGG + chr3_3:31264300-31264319 Msa0449030:intron 25.0%
!!! AAAAGGGATTTTAGGTAAAA+TGG + chr3_3:31264308-31264327 Msa0449030:intron 25.0%
! CACATGTTAAAATACCAAAA+GGG - chr3_3:31264572-31264591 None:intergenic 25.0%
! TCACATGTTAAAATACCAAA+AGG - chr3_3:31264573-31264592 None:intergenic 25.0%
!! CAAAAACACGATATATTTTG+AGG + chr3_3:31264842-31264861 Msa0449030:intron 25.0%
! TGATGTATAAGATAATCGTT+AGG - chr3_3:31265236-31265255 None:intergenic 25.0%
! ATATGATATAGAAGAGAGTT+TGG - chr3_3:31265273-31265292 None:intergenic 25.0%
! AACTCTCTTCTATATCATAT+AGG + chr3_3:31265273-31265292 Msa0449030:intron 25.0%
!!! AAACATGTATTTTAGGAAGA+AGG - chr3_3:31265423-31265442 None:intergenic 25.0%
! AAATAGAACAAAAAGTTGGA+GGG + chr3_3:31265590-31265609 Msa0449030:CDS 25.0%
!! CAAAAAGTGCTCAAGTAAAA+AGG - chr3_3:31262857-31262876 None:intergenic 30.0%
! CAGTTGGATTGAATTTTCAA+AGG + chr3_3:31263287-31263306 Msa0449030:intron 30.0%
AGTTGTTACTACTTTCTCTA+AGG - chr3_3:31263344-31263363 None:intergenic 30.0%
ATTCTAGTAGAACAATTGGA+AGG + chr3_3:31263566-31263585 Msa0449030:CDS 30.0%
! AAGATGCCAAATTGTTTTCT+CGG - chr3_3:31263609-31263628 None:intergenic 30.0%
!! AGTCAACATAAGTTGATGTA+TGG + chr3_3:31263702-31263721 Msa0449030:intron 30.0%
GTACATAATGTTCACTGTTT+GGG + chr3_3:31263896-31263915 Msa0449030:CDS 30.0%
TACATAATGTTCACTGTTTG+GGG + chr3_3:31263897-31263916 Msa0449030:CDS 30.0%
TACGATTCAGAAACATATAG+GGG + chr3_3:31264066-31264085 Msa0449030:CDS 30.0%
!!! CGTTGTTAGCATTTTTTCTA+AGG + chr3_3:31264393-31264412 Msa0449030:intron 30.0%
! AATTGAGTAAACAACCCTTT+TGG + chr3_3:31264555-31264574 Msa0449030:intron 30.0%
! TCATGTTAACATGTGTTTTG+AGG + chr3_3:31264648-31264667 Msa0449030:intron 30.0%
GGATACATGATAGATGATAA+AGG + chr3_3:31264669-31264688 Msa0449030:intron 30.0%
AAAGGCAACAACACTTTAAT+CGG + chr3_3:31264687-31264706 Msa0449030:intron 30.0%
AAATATCGACATCATTTGGT+CGG + chr3_3:31264729-31264748 Msa0449030:intron 30.0%
! TTTTGTTACAACTTAGAGGT+TGG - chr3_3:31264957-31264976 None:intergenic 30.0%
!! ATGAGTTGATCATGTGAATT+TGG - chr3_3:31265041-31265060 None:intergenic 30.0%
AATGACAGAAAATAGAAGTG+TGG - chr3_3:31265451-31265470 None:intergenic 30.0%
AATGCAAAATATCATGGATG+TGG - chr3_3:31265481-31265500 None:intergenic 30.0%
GAGGAAATAGAACAAAAAGT+TGG + chr3_3:31265586-31265605 Msa0449030:CDS 30.0%
GAAATAGAACAAAAAGTTGG+AGG + chr3_3:31265589-31265608 Msa0449030:CDS 30.0%
! CATAATAATGAGGTATCACT+TGG - chr3_3:31265706-31265725 None:intergenic 30.0%
CACAATATAAATCAATGAGC+AGG + chr3_3:31265813-31265832 Msa0449030:three_prime_UTR 30.0%
ATCCCATCCCATATATCATA+AGG + chr3_3:31262816-31262835 Msa0449030:CDS 35.0%
GTCCTTATGATATATGGGAT+GGG - chr3_3:31262821-31262840 None:intergenic 35.0%
!! GCACTTTTTGTTCAAAACCA+TGG + chr3_3:31262867-31262886 Msa0449030:CDS 35.0%
!!! TGTTCTATTTTTTGCAGCCT+AGG + chr3_3:31263054-31263073 Msa0449030:intron 35.0%
TTTACCAGATATTCCACTGA+TGG + chr3_3:31263541-31263560 Msa0449030:CDS 35.0%
GGCAATTCTAGTAGAACAAT+TGG + chr3_3:31263562-31263581 Msa0449030:CDS 35.0%
GGTACATAATGTTCACTGTT+TGG + chr3_3:31263895-31263914 Msa0449030:CDS 35.0%
! CTTATTCTTTGGTTCCATGA+AGG + chr3_3:31263923-31263942 Msa0449030:CDS 35.0%
!!! CGAAAAGTGTTTTACCTTCA+TGG - chr3_3:31263940-31263959 None:intergenic 35.0%
TGGAAACTGGATATATGAGA+AGG + chr3_3:31264107-31264126 Msa0449030:CDS 35.0%
AATACTAGAAGCCACAAACA+AGG + chr3_3:31264165-31264184 Msa0449030:intron 35.0%
ATACTAGAAGCCACAAACAA+GGG + chr3_3:31264166-31264185 Msa0449030:intron 35.0%
!! AGTAAGAGGAGTGTTATGAA+CGG + chr3_3:31264219-31264238 Msa0449030:intron 35.0%
TGCTACATGAAACATTCATG+TGG - chr3_3:31264339-31264358 None:intergenic 35.0%
GAGGAACTTGTAGGTTATAT+GGG - chr3_3:31264471-31264490 None:intergenic 35.0%
TGAGGAACTTGTAGGTTATA+TGG - chr3_3:31264472-31264491 None:intergenic 35.0%
!!! GCATTGATTTTTTCCAGATG+AGG - chr3_3:31264490-31264509 None:intergenic 35.0%
!!! GAACCCAGATTTTTTCACTT+GGG + chr3_3:31264768-31264787 Msa0449030:intron 35.0%
ACACCCAAGTGAAAAAATCT+GGG - chr3_3:31264774-31264793 None:intergenic 35.0%
!! ACTTAGAGGTTGGTAAACAT+AGG - chr3_3:31264947-31264966 None:intergenic 35.0%
GAATTCAATCATCAGCTAAC+GGG - chr3_3:31264996-31265015 None:intergenic 35.0%
CGAATTCAATCATCAGCTAA+CGG - chr3_3:31264997-31265016 None:intergenic 35.0%
!!! GGAGTTTTATTGTGTGCAAT+CGG - chr3_3:31265215-31265234 None:intergenic 35.0%
! TTTTATGGTTATGCAGCAAG+AGG + chr3_3:31265516-31265535 Msa0449030:intron 35.0%
!! TGGTCAATTGATGGACTAAA+AGG - chr3_3:31265686-31265705 None:intergenic 35.0%
TGTGCATGCTTCCAACAAAT+TGG - chr3_3:31262756-31262775 None:intergenic 40.0%
GAAGCATGCACATACTTGAA+GGG + chr3_3:31262764-31262783 Msa0449030:exon 40.0%
ATATATGGGATGGGATAGAG+TGG - chr3_3:31262812-31262831 None:intergenic 40.0%
GGTCCTTATGATATATGGGA+TGG - chr3_3:31262822-31262841 None:intergenic 40.0%
GGTGAAACCAATGATAGCTT+CGG - chr3_3:31262893-31262912 None:intergenic 40.0%
GAAAGAGGGTAGAGTTTGAA+GGG - chr3_3:31263082-31263101 None:intergenic 40.0%
TGAAAGAGGGTAGAGTTTGA+AGG - chr3_3:31263083-31263102 None:intergenic 40.0%
TCCATGGATAATTATCGGGT+TGG + chr3_3:31263258-31263277 Msa0449030:intron 40.0%
TCCAACCCGATAATTATCCA+TGG - chr3_3:31263262-31263281 None:intergenic 40.0%
GCATCTATGTGCAAAGTGAA+TGG + chr3_3:31263518-31263537 Msa0449030:CDS 40.0%
ATTGCCATCAGTGGAATATC+TGG - chr3_3:31263548-31263567 None:intergenic 40.0%
TCTACTAGAATTGCCATCAG+TGG - chr3_3:31263557-31263576 None:intergenic 40.0%
AGCGTCTGCAAAGGATTAAA+GGG - chr3_3:31263874-31263893 None:intergenic 40.0%
AAGCGTCTGCAAAGGATTAA+AGG - chr3_3:31263875-31263894 None:intergenic 40.0%
TTTAATCCTTTGCAGACGCT+TGG + chr3_3:31263874-31263893 Msa0449030:intron 40.0%
!! GTTTGGGGAGTCTTATTCTT+TGG + chr3_3:31263912-31263931 Msa0449030:CDS 40.0%
TCAGAAACATATAGGGGAGA+TGG + chr3_3:31264072-31264091 Msa0449030:CDS 40.0%
ACTTTAGTAGCCCAATAGCA+TGG + chr3_3:31264428-31264447 Msa0449030:intron 40.0%
TAACCTACAAGTTCCTCATC+TGG + chr3_3:31264474-31264493 Msa0449030:intron 40.0%
TTTCCAGATGAGGAACTTGT+AGG - chr3_3:31264480-31264499 None:intergenic 40.0%
!!! CGAACCCAGATTTTTTCACT+TGG + chr3_3:31264767-31264786 Msa0449030:intron 40.0%
CACACCCAAGTGAAAAAATC+TGG - chr3_3:31264775-31264794 None:intergenic 40.0%
ACTTGAAGAAGCAGCAAAGA+AGG + chr3_3:31265621-31265640 Msa0449030:CDS 40.0%
GGTATCACTTGGTCAATTGA+TGG - chr3_3:31265695-31265714 None:intergenic 40.0%
! GGAAGCATGCACATACTTGA+AGG + chr3_3:31262763-31262782 Msa0449030:exon 45.0%
CAAACTCTACCCTCTTTCAC+AGG + chr3_3:31263084-31263103 Msa0449030:CDS 45.0%
CTGCAATGACCTGTGAAAGA+GGG - chr3_3:31263096-31263115 None:intergenic 45.0%
TATGTACCAAGCGTCTGCAA+AGG - chr3_3:31263883-31263902 None:intergenic 45.0%
GAAACATATAGGGGAGATGG+AGG + chr3_3:31264075-31264094 Msa0449030:CDS 45.0%
! GATTTGTGCTCCCTTGTTTG+TGG - chr3_3:31264179-31264198 None:intergenic 45.0%
GGTTATGCAGCAAGAGGTTA+TGG + chr3_3:31265522-31265541 Msa0449030:intron 45.0%
TGAAGAAGCAGCAAAGAAGG+AGG + chr3_3:31265624-31265643 Msa0449030:CDS 45.0%
GCATGCACATACTTGAAGGG+TGG + chr3_3:31262767-31262786 Msa0449030:exon 50.0%
ACCATGGCCGAAGCTATCAT+TGG + chr3_3:31262883-31262902 Msa0449030:CDS 50.0%
ACCAATGATAGCTTCGGCCA+TGG - chr3_3:31262887-31262906 None:intergenic 50.0%
!! GTAGAGTTTGAAGGGTGCCT+AGG - chr3_3:31263074-31263093 None:intergenic 50.0%
CCTGCAATGACCTGTGAAAG+AGG - chr3_3:31263097-31263116 None:intergenic 50.0%
CCTCTTTCACAGGTCATTGC+AGG + chr3_3:31263094-31263113 Msa0449030:CDS 50.0%
TATAGGGGAGATGGAGGAGA+TGG + chr3_3:31264081-31264100 Msa0449030:CDS 50.0%
GTTCGTTGGGCCATGCTATT+GGG - chr3_3:31264441-31264460 None:intergenic 50.0%
TGTAGGTTATATGGGCGCAC+AGG - chr3_3:31264463-31264482 None:intergenic 50.0%
TCGGTGGTTGTTGGACTATC+AGG - chr3_3:31265160-31265179 None:intergenic 50.0%
GTTGGTACATCGGTGGTTGT+TGG - chr3_3:31265169-31265188 None:intergenic 50.0%
GCAAGAGGTTATGGAAGCAG+AGG + chr3_3:31265531-31265550 Msa0449030:intron 50.0%
AATCAACTCCTCACGCCACA+GGG - chr3_3:31265566-31265585 None:intergenic 50.0%
AGAAGCAGCAAAGAAGGAGG+AGG + chr3_3:31265627-31265646 Msa0449030:CDS 50.0%
!! ATCGGGTTGGATAGCGCAGT+TGG + chr3_3:31263271-31263290 Msa0449030:intron 55.0%
! GAGGAGATGGCACTGGAAAC+TGG + chr3_3:31264094-31264113 Msa0449030:CDS 55.0%
GGTTCGTTGGGCCATGCTAT+TGG - chr3_3:31264442-31264461 None:intergenic 55.0%
TATGGGCGCACAGGTTCGTT+GGG - chr3_3:31264454-31264473 None:intergenic 55.0%
ATATGGGCGCACAGGTTCGT+TGG - chr3_3:31264455-31264474 None:intergenic 55.0%
ACCACCGATGTACCAACTGC+AGG + chr3_3:31265172-31265191 Msa0449030:intron 55.0%
! CTCGCCTGCAGTTGGTACAT+CGG - chr3_3:31265179-31265198 None:intergenic 55.0%
GACAATCTCTCGCCTGCAGT+TGG - chr3_3:31265187-31265206 None:intergenic 55.0%
CAATCAACTCCTCACGCCAC+AGG - chr3_3:31265567-31265586 None:intergenic 55.0%
! GTGGCGTGAGGAGTTGATTG+AGG + chr3_3:31265567-31265586 Msa0449030:CDS 55.0%
GGAGATGGAGGAGATGGCAC+TGG + chr3_3:31264087-31264106 Msa0449030:CDS 60.0%
! GCCTGCAGTTGGTACATCGG+TGG - chr3_3:31265176-31265195 None:intergenic 60.0%
CAGAGGCCAGAGAAGCCCTG+TGG + chr3_3:31265548-31265567 Msa0449030:CDS 65.0%
CTCACGCCACAGGGCTTCTC+TGG - chr3_3:31265557-31265576 None:intergenic 65.0%
CAGAGAAGCCCTGTGGCGTG+AGG + chr3_3:31265555-31265574 Msa0449030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 31262746 31265916 31262746 ID=Msa0449030;Name=Msa0449030
chr3_3 mRNA 31262746 31265916 31262746 ID=Msa0449030-mRNA-1;Parent=Msa0449030;Name=Msa0449030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=23|1|1|1|1|1|6|253|221
chr3_3 exon 31262746 31262969 31262746 ID=Msa0449030-mRNA-1:exon:5731;Parent=Msa0449030-mRNA-1
chr3_3 exon 31263071 31263115 31263071 ID=Msa0449030-mRNA-1:exon:5732;Parent=Msa0449030-mRNA-1
chr3_3 exon 31263494 31263653 31263494 ID=Msa0449030-mRNA-1:exon:5733;Parent=Msa0449030-mRNA-1
chr3_3 exon 31263889 31263944 31263889 ID=Msa0449030-mRNA-1:exon:5734;Parent=Msa0449030-mRNA-1
chr3_3 exon 31264057 31264128 31264057 ID=Msa0449030-mRNA-1:exon:5735;Parent=Msa0449030-mRNA-1
chr3_3 exon 31265532 31265916 31265532 ID=Msa0449030-mRNA-1:exon:5736;Parent=Msa0449030-mRNA-1
chr3_3 five_prime_UTR 31262746 31262768 31262746 ID=Msa0449030-mRNA-1:five_prime_utr;Parent=Msa0449030-mRNA-1
chr3_3 CDS 31262769 31262969 31262769 ID=Msa0449030-mRNA-1:cds;Parent=Msa0449030-mRNA-1
chr3_3 CDS 31263071 31263115 31263071 ID=Msa0449030-mRNA-1:cds;Parent=Msa0449030-mRNA-1
chr3_3 CDS 31263494 31263653 31263494 ID=Msa0449030-mRNA-1:cds;Parent=Msa0449030-mRNA-1
chr3_3 CDS 31263889 31263944 31263889 ID=Msa0449030-mRNA-1:cds;Parent=Msa0449030-mRNA-1
chr3_3 CDS 31264057 31264128 31264057 ID=Msa0449030-mRNA-1:cds;Parent=Msa0449030-mRNA-1
chr3_3 CDS 31265532 31265663 31265532 ID=Msa0449030-mRNA-1:cds;Parent=Msa0449030-mRNA-1
chr3_3 three_prime_UTR 31265664 31265916 31265664 ID=Msa0449030-mRNA-1:three_prime_utr;Parent=Msa0449030-mRNA-1
Gene Sequence

>Msa0449030

ATGCACATACTTGAAGGGTGGTTCTTCATTCTACTCTTATCCACTCTATCCCATCCCATATATCATAAGGACCATAATTTCAACTCCTTTTTACTTGAGCACTTTTTGTTCAAAACCATGGCCGAAGCTATCATTGGTTTCACCGTTTTCAATTCATATATTCATAGCTCATGTCTTCAAACAAAACGATTTACAAGATTGCCTAGGCACCCTTCAAACTCTACCCTCTTTCACAGGTCATTGCAGGTGTTAGATGGAAAAATAAAAAGAGCATCTATGTGCAAAGTGAATGGTTTACCAGATATTCCACTGATGGCAATTCTAGTAGAACAATTGGAAGGTCAAAGAGATCTTATAACCGAGAAAACAATTTGGCATCTTAGTGATCAGCAAATAAAGAATGTTTACGCTTGGTACATAATGTTCACTGTTTGGGGAGTCTTATTCTTTGGTTCCATGAAGGACCCATATTACGATTCAGAAACATATAGGGGAGATGGAGGAGATGGCACTGGAAACTGGATATATGAGAAGCAAGAGGTTATGGAAGCAGAGGCCAGAGAAGCCCTGTGGCGTGAGGAGTTGATTGAGGAAATAGAACAAAAAGTTGGAGGGTTGAGAGAACTTGAAGAAGCAGCAAAGAAGGAGGAGGAACTTGTTAAATGA

Protein sequence

>Msa0449030

MHILEGWFFILLLSTLSHPIYHKDHNFNSFLLEHFLFKTMAEAIIGFTVFNSYIHSSCLQTKRFTRLPRHPSNSTLFHRSLQVLDGKIKRASMCKVNGLPDIPLMAILVEQLEGQRDLITEKTIWHLSDQQIKNVYAWYIMFTVWGVLFFGSMKDPYYDSETYRGDGGDGTGNWIYEKQEVMEAEAREALWREELIEEIEQKVGGLRELEEAAKKEEELVK*