AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550770 MtrunA17_Chr4g0035731 88.153 287 31 2 1 286 1 285 9.94e-159 443
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550770 AT2G21350.1 42.400 250 106 9 2 246 3 219 7.42e-42 144
Msa0550770 AT4G39040.2 62.500 112 42 0 146 257 153 264 2.10e-35 129
Msa0550770 AT4G39040.1 62.500 112 42 0 146 257 153 264 2.32e-35 129

Find 93 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCGGGATTGTCGATTTC+TGG 0.153329 4_1:+46327968 Msa0550770:three_prime_UTR
TTCAATTTCGTCTTCTTCTA+TGG 0.227363 4_1:-46325697 None:intergenic
CGAACCCCGCCGTGATGATT+TGG 0.238788 4_1:-46327804 None:intergenic
GACTAGGCCTGTATAAAATA+AGG 0.255349 4_1:-46327593 None:intergenic
TGGGTCTTATGCACATAGTT+TGG 0.267978 4_1:+46325890 Msa0550770:CDS
CCTCTTTCTTCCTTCGTTGA+AGG 0.270970 4_1:+46325660 Msa0550770:CDS
GGGTCTTATGCACATAGTTT+GGG 0.294992 4_1:+46325891 Msa0550770:CDS
ATCATATAAACTAGAATTAC+AGG 0.314435 4_1:+46328236 Msa0550770:three_prime_UTR
TGATGCCGTCATCTCTGTTT+TGG 0.316497 4_1:-46325418 None:intergenic
ATGAAGTCTTAAATTGAGTT+TGG 0.322635 4_1:+46328046 Msa0550770:three_prime_UTR
AACGAAGACTACTAATAAAC+AGG 0.325327 4_1:+46327682 Msa0550770:CDS
TAAGAAGTTCATTAGCTTCA+AGG 0.331752 4_1:-46325986 None:intergenic
TGAAGCTAATGAACTTCTTA+AGG 0.332588 4_1:+46325989 Msa0550770:CDS
AAAGAGTCTCATTCTTGTTC+AGG 0.360127 4_1:-46327894 None:intergenic
GAACCCCGCCGTGATGATTT+GGG 0.368695 4_1:-46327803 None:intergenic
GAGAGAAGAGAGATTGAAAC+TGG 0.370203 4_1:+46325830 Msa0550770:CDS
TTTGGATTGTGAAATGAAAC+TGG 0.376256 4_1:-46325400 None:intergenic
TGGAGAATGTTGCTTCCATT+TGG 0.384947 4_1:+46328173 Msa0550770:three_prime_UTR
ACACAATTGGTGGGTAAGTC+TGG 0.392170 4_1:+46325927 Msa0550770:CDS
TACTGGCAGATGAGAATTCC+GGG 0.399607 4_1:+46327953 Msa0550770:three_prime_UTR
GTACTGGCAGATGAGAATTC+CGG 0.402233 4_1:+46327952 Msa0550770:three_prime_UTR
GGAAGAAAGAGGAGGGATGT+AGG 0.418907 4_1:-46325649 None:intergenic
AAATAAGGGTTCGACCAATC+TGG 0.423091 4_1:-46327578 None:intergenic
CATGGAAAGCGAGAGGAAAT+AGG 0.424887 4_1:+46327828 Msa0550770:CDS
CCAGTACAATGTCCAGTCCT+TGG 0.439188 4_1:-46327936 None:intergenic
ACTGAAAGCAGTAATAAGAT+TGG 0.440308 4_1:-46325958 None:intergenic
TCAGTGACCGTTGGCCAGAT+TGG 0.443479 4_1:+46327564 Msa0550770:CDS
CGAAGGGTAATATTGGAAGA+AGG 0.461644 4_1:-46325543 None:intergenic
CTATTTCCTCTCGCTTTCCA+TGG 0.468374 4_1:-46327827 None:intergenic
CAGTACAATGTCCAGTCCTT+GGG 0.469095 4_1:-46327935 None:intergenic
GGAACACTTGTATGAGGTTG+TGG 0.470746 4_1:+46327996 Msa0550770:three_prime_UTR
TCTTCTCTCTTTGTCACCAA+TGG 0.477641 4_1:-46325816 None:intergenic
AAGACTTCATCCTCTAGCTC+TGG 0.479939 4_1:-46328033 None:intergenic
GCCTAGTCTCTCCAAATTGA+AGG 0.481817 4_1:+46327608 Msa0550770:CDS
GGATAAGAAATATGGTGAAC+GGG 0.482122 4_1:-46325598 None:intergenic
CTGAAAGCAGTAATAAGATT+GGG 0.482185 4_1:-46325957 None:intergenic
ACTAGGCCTGTATAAAATAA+GGG 0.483984 4_1:-46327592 None:intergenic
CTTTCCTTCACACTCAAACT+CGG 0.486915 4_1:-46325858 None:intergenic
ATTGAGTTTGGTTTATTCTG+TGG 0.487591 4_1:+46328058 Msa0550770:three_prime_UTR
AAAATACACGGGAGTTGTCC+AGG 0.506780 4_1:+46327498 Msa0550770:CDS
AAGAAAAGAAGAAACAAGTT+CGG 0.507063 4_1:+46327634 Msa0550770:CDS
AGAAGATGTTGTGAAGCAGT+TGG 0.507699 4_1:+46327527 Msa0550770:CDS
ACTCTCATCCACCATCACTT+TGG 0.511098 4_1:-46325778 None:intergenic
GATTGTCGATTTCTGGATCA+AGG 0.513618 4_1:+46327975 Msa0550770:three_prime_UTR
AAGCAGTTGGAAGAAGCAAC+TGG 0.518116 4_1:+46327540 Msa0550770:CDS
TTTGAGAAATGAAATGAAAG+AGG 0.521063 4_1:-46325508 None:intergenic
AGAACCCAAATCATCACGGC+GGG 0.527975 4_1:+46327799 Msa0550770:CDS
AAAGCTTAGCACACAATTGG+TGG 0.528041 4_1:+46325917 Msa0550770:CDS
CCAAGGACTGGACATTGTAC+TGG 0.532343 4_1:+46327936 Msa0550770:three_prime_UTR
GTGAAGGAAAGGAAAGAACT+TGG 0.535787 4_1:+46325870 Msa0550770:CDS
AATGTCCAGTCCTTGGGTAT+CGG 0.547091 4_1:-46327929 None:intergenic
GATCAAGGAACACTTGTATG+AGG 0.553111 4_1:+46327990 Msa0550770:three_prime_UTR
TGAAACTACATCGTCGCCAT+TGG 0.556171 4_1:+46325800 Msa0550770:CDS
TTGGAAGAAGGAATAAAGAG+AGG 0.559901 4_1:-46325531 None:intergenic
ACGGTAACGGCGGTTGTGAA+CGG 0.569654 4_1:-46325473 None:intergenic
TGGATAAGAAATATGGTGAA+CGG 0.571212 4_1:-46325599 None:intergenic
GAAGATGACGGTGACGGTAA+CGG 0.572355 4_1:-46325486 None:intergenic
TGAAGTTGAACCTTCAACGA+AGG 0.575257 4_1:-46325670 None:intergenic
ACATACCGATACCCAAGGAC+TGG 0.576045 4_1:+46327924 Msa0550770:three_prime_UTR
CGAGTTTGAGTGTGAAGGAA+AGG 0.578460 4_1:+46325859 Msa0550770:CDS
CATCACGGCGGGGTTCGCCA+TGG 0.588212 4_1:+46327810 Msa0550770:CDS
GATCCAGAAATCGACAATCC+CGG 0.588392 4_1:-46327971 None:intergenic
GGTCTTATGCACATAGTTTG+GGG 0.589830 4_1:+46325892 Msa0550770:CDS
CCTTCAACGAAGGAAGAAAG+AGG 0.590228 4_1:-46325660 None:intergenic
ACAACATCTTCTAACTCACC+TGG 0.594667 4_1:-46327516 None:intergenic
GAGAACGACGAGGAGGTGAG+AGG 0.594830 4_1:-46325451 None:intergenic
CATTTACAGATTAAAATACA+CGG 0.607337 4_1:+46327486 Msa0550770:intron
GTTTCGTCGAAGGATTGTTG+TGG 0.608084 4_1:+46327864 Msa0550770:three_prime_UTR
ACAATCCAAAACAGAGATGA+CGG 0.613980 4_1:+46325413 Msa0550770:exon
TAAACACGTAGTTTCGTCGA+AGG 0.615826 4_1:+46327854 Msa0550770:exon
TTATGAAGATACCAAAGTGA+TGG 0.617568 4_1:+46325767 Msa0550770:CDS
TGAAGATACCAAAGTGATGG+TGG 0.621891 4_1:+46325770 Msa0550770:CDS
ACCTTCAATTTGGAGAGACT+AGG 0.627384 4_1:-46327609 None:intergenic
AAGCTTAGCACACAATTGGT+GGG 0.629215 4_1:+46325918 Msa0550770:CDS
GCAACTGGTTCAGTGACCGT+TGG 0.632856 4_1:+46327555 Msa0550770:CDS
CAACGAAGGAAGAAAGAGGA+GGG 0.633433 4_1:-46325656 None:intergenic
ATTTACAGATTAAAATACAC+GGG 0.633460 4_1:+46327487 Msa0550770:intron
TGAAGGAAAGGAAAGAACTT+GGG 0.637854 4_1:+46325871 Msa0550770:CDS
AAAGAGGAAGATGACGGTGA+CGG 0.641972 4_1:-46325492 None:intergenic
TCAACGAAGGAAGAAAGAGG+AGG 0.642176 4_1:-46325657 None:intergenic
TGCTTTGTGACCAGAGCTAG+AGG 0.644427 4_1:+46328023 Msa0550770:three_prime_UTR
GAAATGAAAGAGGAAGATGA+CGG 0.644772 4_1:-46325498 None:intergenic
AACAAGAACCCAAATCATCA+CGG 0.648444 4_1:+46327795 Msa0550770:CDS
ACGAAGACTACTAATAAACA+GGG 0.650052 4_1:+46327683 Msa0550770:CDS
GGTTCGACCAATCTGGCCAA+CGG 0.657872 4_1:-46327571 None:intergenic
GGTTCGCCATGGAAAGCGAG+AGG 0.664200 4_1:+46327821 Msa0550770:CDS
TGCGTACATACCGATACCCA+AGG 0.670314 4_1:+46327919 Msa0550770:three_prime_UTR
GAACCCAAATCATCACGGCG+GGG 0.716097 4_1:+46327800 Msa0550770:CDS
AGTGCCGAGTTTGAGTGTGA+AGG 0.720831 4_1:+46325854 Msa0550770:CDS
GTGAACGGAGAACGACGAGG+AGG 0.727474 4_1:-46325458 None:intergenic
GATGACGGTGACGGTAACGG+CGG 0.733207 4_1:-46325483 None:intergenic
AAGAACCCAAATCATCACGG+CGG 0.750849 4_1:+46327798 Msa0550770:CDS
GTTGTGAACGGAGAACGACG+AGG 0.796015 4_1:-46325461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATCATCTTTATTTGA+AGG + chr4_1:46327185-46327204 Msa0550770:intron 15.0%
!!! ATTAAATTGCAATTTTTTCA+TGG + chr4_1:46328153-46328172 Msa0550770:three_prime_UTR 15.0%
!!! TGTTTGTGTTTGATATATTT+TGG + chr4_1:46326082-46326101 Msa0550770:intron 20.0%
!!! TGATATATTTTGGTAATACA+TGG + chr4_1:46326092-46326111 Msa0550770:intron 20.0%
!!! GATATATTTTGGTAATACAT+GGG + chr4_1:46326093-46326112 Msa0550770:intron 20.0%
!! TTGTCATTGATGTTAATTAT+TGG + chr4_1:46326277-46326296 Msa0550770:intron 20.0%
!! ATAGATACTGAGAATAATTT+AGG - chr4_1:46326721-46326740 None:intergenic 20.0%
!!! ATCAATATATAGACCATTTT+AGG - chr4_1:46327041-46327060 None:intergenic 20.0%
!!! ATTAATTTGTACTTGCAATT+TGG + chr4_1:46327459-46327478 Msa0550770:intron 20.0%
!! CATTTACAGATTAAAATACA+CGG + chr4_1:46327486-46327505 Msa0550770:intron 20.0%
!! ATTTACAGATTAAAATACAC+GGG + chr4_1:46327487-46327506 Msa0550770:intron 20.0%
! TTTGAGAAATGAAATGAAAG+AGG - chr4_1:46325511-46325530 None:intergenic 25.0%
!! AAATTTTCGAAGGGTAATAT+TGG - chr4_1:46325553-46325572 None:intergenic 25.0%
!!! AATGTGTTATTGTTTTCATG+TGG + chr4_1:46326193-46326212 Msa0550770:intron 25.0%
! AATTACAGATGCTAAACATA+AGG - chr4_1:46326229-46326248 None:intergenic 25.0%
! AAAGTGAATGCAAATTCATT+AGG + chr4_1:46326333-46326352 Msa0550770:intron 25.0%
! AATAGCAGATTGTTTCAATT+CGG + chr4_1:46326389-46326408 Msa0550770:intron 25.0%
! ACAAAATTATTGTCAACTAG+TGG - chr4_1:46326445-46326464 None:intergenic 25.0%
! TTGTTAAATACCATCTATAG+TGG - chr4_1:46326534-46326553 None:intergenic 25.0%
! TAGATGGTATTTAACAACAT+TGG + chr4_1:46326537-46326556 Msa0550770:intron 25.0%
! AGATGGTATTTAACAACATT+GGG + chr4_1:46326538-46326557 Msa0550770:intron 25.0%
!! GATTTAGCAAGAGTATATTT+AGG + chr4_1:46326596-46326615 Msa0550770:intron 25.0%
! CTGAGAATAATTTAGGAAAA+TGG - chr4_1:46326714-46326733 None:intergenic 25.0%
!! ACTTCAGAGTGTAATTTTTA+TGG + chr4_1:46327159-46327178 Msa0550770:intron 25.0%
!! TAATCATCTTTATTTGAAGG+AGG + chr4_1:46327188-46327207 Msa0550770:intron 25.0%
!! AATCATCTTTATTTGAAGGA+GGG + chr4_1:46327189-46327208 Msa0550770:intron 25.0%
! ACAAAGCAATATACTTTCAT+TGG + chr4_1:46327318-46327337 Msa0550770:intron 25.0%
!!! ACTTGTGCATTTTAATGATT+AGG - chr4_1:46327411-46327430 None:intergenic 25.0%
! AAGAAAAGAAGAAACAAGTT+CGG + chr4_1:46327634-46327653 Msa0550770:CDS 25.0%
! ATGAAGTCTTAAATTGAGTT+TGG + chr4_1:46328046-46328065 Msa0550770:three_prime_UTR 25.0%
TTTGGATTGTGAAATGAAAC+TGG - chr4_1:46325403-46325422 None:intergenic 30.0%
TGGATAAGAAATATGGTGAA+CGG - chr4_1:46325602-46325621 None:intergenic 30.0%
TTCAATTTCGTCTTCTTCTA+TGG - chr4_1:46325700-46325719 None:intergenic 30.0%
TTATGAAGATACCAAAGTGA+TGG + chr4_1:46325767-46325786 Msa0550770:CDS 30.0%
CTGAAAGCAGTAATAAGATT+GGG - chr4_1:46325960-46325979 None:intergenic 30.0%
ACTGAAAGCAGTAATAAGAT+TGG - chr4_1:46325961-46325980 None:intergenic 30.0%
! TAAGAAGTTCATTAGCTTCA+AGG - chr4_1:46325989-46326008 None:intergenic 30.0%
TGAAGCTAATGAACTTCTTA+AGG + chr4_1:46325989-46326008 Msa0550770:CDS 30.0%
! CTGAAAAATGTCTCTGTTTT+CGG + chr4_1:46326050-46326069 Msa0550770:intron 30.0%
CATTGGGCAATACAAATAAA+TGG + chr4_1:46326554-46326573 Msa0550770:intron 30.0%
CAATACAAATAAATGGCCTT+GGG + chr4_1:46326561-46326580 Msa0550770:intron 30.0%
! AATACAAATAAATGGCCTTG+GGG + chr4_1:46326562-46326581 Msa0550770:intron 30.0%
AGAGTATATTTAGGAACTAG+TGG + chr4_1:46326605-46326624 Msa0550770:intron 30.0%
TATAACTTCAAGTGTCATGT+TGG - chr4_1:46326679-46326698 None:intergenic 30.0%
TGTAAAACGATTGTTTGAGT+TGG + chr4_1:46326796-46326815 Msa0550770:intron 30.0%
! TGGTCTATATATTGATTAGC+TGG + chr4_1:46327045-46327064 Msa0550770:intron 30.0%
! GGTCTATATATTGATTAGCT+GGG + chr4_1:46327046-46327065 Msa0550770:intron 30.0%
TGTGTGATTCAATTATGTCT+CGG + chr4_1:46327119-46327138 Msa0550770:intron 30.0%
! ATCATCTTTATTTGAAGGAG+GGG + chr4_1:46327190-46327209 Msa0550770:intron 30.0%
TACTGTAAAACTGTTCTACA+CGG + chr4_1:46327345-46327364 Msa0550770:intron 30.0%
!! TGTGCATTTTAATGATTAGG+AGG - chr4_1:46327408-46327427 None:intergenic 30.0%
ACTAGGCCTGTATAAAATAA+GGG - chr4_1:46327595-46327614 None:intergenic 30.0%
! CTTTTCTTCTACCTTCAATT+TGG - chr4_1:46327622-46327641 None:intergenic 30.0%
AACGAAGACTACTAATAAAC+AGG + chr4_1:46327682-46327701 Msa0550770:CDS 30.0%
ACGAAGACTACTAATAAACA+GGG + chr4_1:46327683-46327702 Msa0550770:CDS 30.0%
GAAGAGATCAAAATAATTCG+AGG - chr4_1:46327735-46327754 None:intergenic 30.0%
! ATTGAGTTTGGTTTATTCTG+TGG + chr4_1:46328058-46328077 Msa0550770:three_prime_UTR 30.0%
!! TGCTACTATTTTTCTCCAAA+TGG - chr4_1:46328191-46328210 None:intergenic 30.0%
ACAATCCAAAACAGAGATGA+CGG + chr4_1:46325413-46325432 Msa0550770:exon 35.0%
GAAATGAAAGAGGAAGATGA+CGG - chr4_1:46325501-46325520 None:intergenic 35.0%
TTGGAAGAAGGAATAAAGAG+AGG - chr4_1:46325534-46325553 None:intergenic 35.0%
!! AAATATGGTGAACGGGTTTT+TGG - chr4_1:46325594-46325613 None:intergenic 35.0%
GGATAAGAAATATGGTGAAC+GGG - chr4_1:46325601-46325620 None:intergenic 35.0%
TGAAGGAAAGGAAAGAACTT+GGG + chr4_1:46325871-46325890 Msa0550770:CDS 35.0%
GAAAAAGCTTAGCACACAAT+TGG + chr4_1:46325914-46325933 Msa0550770:CDS 35.0%
! AAATGTCTCTGTTTTCGGTT+TGG + chr4_1:46326055-46326074 Msa0550770:intron 35.0%
!! TTTTGGTAATACATGGGAAG+AGG + chr4_1:46326099-46326118 Msa0550770:intron 35.0%
GTAGGTGTATGTGTTCTTTA+AGG + chr4_1:46326133-46326152 Msa0550770:intron 35.0%
GCAATACAAATAAATGGCCT+TGG + chr4_1:46326560-46326579 Msa0550770:intron 35.0%
! ATACAAATAAATGGCCTTGG+GGG + chr4_1:46326563-46326582 Msa0550770:intron 35.0%
ACCGACACTTTAGATTGAAA+GGG + chr4_1:46326643-46326662 Msa0550770:intron 35.0%
! ACCCTTTCAATCTAAAGTGT+CGG - chr4_1:46326647-46326666 None:intergenic 35.0%
ACATACGCAATCATCAAACA+AGG - chr4_1:46326745-46326764 None:intergenic 35.0%
! CGTTTTACATACATCAAGTC+TGG - chr4_1:46326785-46326804 None:intergenic 35.0%
!! AACGATTGTTTGAGTTGGTT+TGG + chr4_1:46326801-46326820 Msa0550770:intron 35.0%
CATGCAATCTTATTCTAGTG+TGG + chr4_1:46326911-46326930 Msa0550770:intron 35.0%
ATCTTATTCTAGTGTGGAAG+TGG + chr4_1:46326917-46326936 Msa0550770:intron 35.0%
! CTTAAGTGTTGCACCTAAAA+TGG + chr4_1:46327025-46327044 Msa0550770:intron 35.0%
GTGTGATTCAATTATGTCTC+GGG + chr4_1:46327120-46327139 Msa0550770:intron 35.0%
TGTGATTCAATTATGTCTCG+GGG + chr4_1:46327121-46327140 Msa0550770:intron 35.0%
CACGATGAAAAGGATATGTA+TGG - chr4_1:46327372-46327391 None:intergenic 35.0%
AGAGAAAACACACGATGAAA+AGG - chr4_1:46327382-46327401 None:intergenic 35.0%
AGATGCAAAGATTGTGAACA+AGG - chr4_1:46327438-46327457 None:intergenic 35.0%
!!! GTCGAACCCTTATTTTATAC+AGG + chr4_1:46327586-46327605 Msa0550770:CDS 35.0%
GACTAGGCCTGTATAAAATA+AGG - chr4_1:46327596-46327615 None:intergenic 35.0%
!! ACAAGTTCGGAAACTTTTTC+TGG + chr4_1:46327647-46327666 Msa0550770:CDS 35.0%
AGACTACTAATAAACAGGGT+AGG + chr4_1:46327687-46327706 Msa0550770:intron 35.0%
CTAATAAACAGGGTAGGTTA+TGG + chr4_1:46327693-46327712 Msa0550770:intron 35.0%
CAAGAACATTAGTGAAGCAT+AGG - chr4_1:46327757-46327776 None:intergenic 35.0%
AACAAGAACCCAAATCATCA+CGG + chr4_1:46327795-46327814 Msa0550770:CDS 35.0%
AAAGAGTCTCATTCTTGTTC+AGG - chr4_1:46327897-46327916 None:intergenic 35.0%
CGAAGGGTAATATTGGAAGA+AGG - chr4_1:46325546-46325565 None:intergenic 40.0%
! GTGAGGGTGAAATTTTCGAA+GGG - chr4_1:46325562-46325581 None:intergenic 40.0%
! AAAAAGCGCGGGAAGAAAAA+GGG - chr4_1:46325629-46325648 None:intergenic 40.0%
TGAAGTTGAACCTTCAACGA+AGG - chr4_1:46325673-46325692 None:intergenic 40.0%
TGAAGATACCAAAGTGATGG+TGG + chr4_1:46325770-46325789 Msa0550770:CDS 40.0%
TCTTCTCTCTTTGTCACCAA+TGG - chr4_1:46325819-46325838 None:intergenic 40.0%
GAGAGAAGAGAGATTGAAAC+TGG + chr4_1:46325830-46325849 Msa0550770:CDS 40.0%
CTTTCCTTCACACTCAAACT+CGG - chr4_1:46325861-46325880 None:intergenic 40.0%
GTGAAGGAAAGGAAAGAACT+TGG + chr4_1:46325870-46325889 Msa0550770:CDS 40.0%
! TGGGTCTTATGCACATAGTT+TGG + chr4_1:46325890-46325909 Msa0550770:CDS 40.0%
! GGGTCTTATGCACATAGTTT+GGG + chr4_1:46325891-46325910 Msa0550770:CDS 40.0%
! GGTCTTATGCACATAGTTTG+GGG + chr4_1:46325892-46325911 Msa0550770:CDS 40.0%
AAAGCTTAGCACACAATTGG+TGG + chr4_1:46325917-46325936 Msa0550770:CDS 40.0%
AAGCTTAGCACACAATTGGT+GGG + chr4_1:46325918-46325937 Msa0550770:CDS 40.0%
TACATGGGAAGAGGAATTTG+AGG + chr4_1:46326108-46326127 Msa0550770:intron 40.0%
AATGCCAGAGTTGTCAATTG+TGG + chr4_1:46326357-46326376 Msa0550770:intron 40.0%
CTATCCACAATTGACAACTC+TGG - chr4_1:46326364-46326383 None:intergenic 40.0%
TTGTCAACTAGTGGTTACAG+TGG - chr4_1:46326436-46326455 None:intergenic 40.0%
!! GTCCAAATTCCGATTTGCTA+CGG + chr4_1:46326498-46326517 Msa0550770:intron 40.0%
AATCCAACAAAATACCCCCA+AGG - chr4_1:46326580-46326599 None:intergenic 40.0%
CACCGACACTTTAGATTGAA+AGG + chr4_1:46326642-46326661 Msa0550770:intron 40.0%
TCAAGTGTCATGTTGGACAT+CGG - chr4_1:46326672-46326691 None:intergenic 40.0%
TGCAATAGTCTTTGCAGTCT+TGG + chr4_1:46326824-46326843 Msa0550770:intron 40.0%
!!! TCTTGGTGCTTTTTGATGGT+TGG + chr4_1:46326841-46326860 Msa0550770:intron 40.0%
TGTGTTTGACAACTTTCCGT+TGG + chr4_1:46326965-46326984 Msa0550770:intron 40.0%
GTGATTCAATTATGTCTCGG+GGG + chr4_1:46327122-46327141 Msa0550770:intron 40.0%
ACAACATCTTCTAACTCACC+TGG - chr4_1:46327519-46327538 None:intergenic 40.0%
AGAAGATGTTGTGAAGCAGT+TGG + chr4_1:46327527-46327546 Msa0550770:CDS 40.0%
AAATAAGGGTTCGACCAATC+TGG - chr4_1:46327581-46327600 None:intergenic 40.0%
ACCTTCAATTTGGAGAGACT+AGG - chr4_1:46327612-46327631 None:intergenic 40.0%
TTCTTGTGAAACTGCAGAGT+AGG + chr4_1:46327771-46327790 Msa0550770:intron 40.0%
TCTTGTGAAACTGCAGAGTA+GGG + chr4_1:46327772-46327791 Msa0550770:intron 40.0%
TAAACACGTAGTTTCGTCGA+AGG + chr4_1:46327854-46327873 Msa0550770:exon 40.0%
!! GATTGTCGATTTCTGGATCA+AGG + chr4_1:46327975-46327994 Msa0550770:three_prime_UTR 40.0%
GATCAAGGAACACTTGTATG+AGG + chr4_1:46327990-46328009 Msa0550770:three_prime_UTR 40.0%
! TGGAGAATGTTGCTTCCATT+TGG + chr4_1:46328173-46328192 Msa0550770:three_prime_UTR 40.0%
! TGATGCCGTCATCTCTGTTT+TGG - chr4_1:46325421-46325440 None:intergenic 45.0%
! AAAGAGGAAGATGACGGTGA+CGG - chr4_1:46325495-46325514 None:intergenic 45.0%
! GGTGAGGGTGAAATTTTCGA+AGG - chr4_1:46325563-46325582 None:intergenic 45.0%
!! TTTTTGGAAGGGATGGGTGA+GGG - chr4_1:46325578-46325597 None:intergenic 45.0%
!! AACGGGTTTTTGGAAGGGAT+GGG - chr4_1:46325584-46325603 None:intergenic 45.0%
!! TGGTGAACGGGTTTTTGGAA+GGG - chr4_1:46325589-46325608 None:intergenic 45.0%
!! ATGGTGAACGGGTTTTTGGA+AGG - chr4_1:46325590-46325609 None:intergenic 45.0%
! GGGGGTGTGGATAAGAAATA+TGG - chr4_1:46325609-46325628 None:intergenic 45.0%
! AAAAGCGCGGGAAGAAAAAG+GGG - chr4_1:46325628-46325647 None:intergenic 45.0%
! GAAAAAGCGCGGGAAGAAAA+AGG - chr4_1:46325630-46325649 None:intergenic 45.0%
CAACGAAGGAAGAAAGAGGA+GGG - chr4_1:46325659-46325678 None:intergenic 45.0%
TCAACGAAGGAAGAAAGAGG+AGG - chr4_1:46325660-46325679 None:intergenic 45.0%
CCTTCAACGAAGGAAGAAAG+AGG - chr4_1:46325663-46325682 None:intergenic 45.0%
CCTCTTTCTTCCTTCGTTGA+AGG + chr4_1:46325660-46325679 Msa0550770:CDS 45.0%
ACTCTCATCCACCATCACTT+TGG - chr4_1:46325781-46325800 None:intergenic 45.0%
TGAAACTACATCGTCGCCAT+TGG + chr4_1:46325800-46325819 Msa0550770:CDS 45.0%
CGAGTTTGAGTGTGAAGGAA+AGG + chr4_1:46325859-46325878 Msa0550770:CDS 45.0%
! ACACAATTGGTGGGTAAGTC+TGG + chr4_1:46325927-46325946 Msa0550770:CDS 45.0%
ATGGGAAGAGGAATTTGAGG+TGG + chr4_1:46326111-46326130 Msa0550770:intron 45.0%
! GAAGAGGAATTTGAGGTGGT+AGG + chr4_1:46326115-46326134 Msa0550770:intron 45.0%
CACCGTAGCAAATCGGAATT+TGG - chr4_1:46326503-46326522 None:intergenic 45.0%
!! CAAATTCCGATTTGCTACGG+TGG + chr4_1:46326501-46326520 Msa0550770:intron 45.0%
!!! GCAGTCTTGGTGCTTTTTGA+TGG + chr4_1:46326837-46326856 Msa0550770:intron 45.0%
AAAATACACGGGAGTTGTCC+AGG + chr4_1:46327498-46327517 Msa0550770:CDS 45.0%
AAGCAGTTGGAAGAAGCAAC+TGG + chr4_1:46327540-46327559 Msa0550770:CDS 45.0%
GCCTAGTCTCTCCAAATTGA+AGG + chr4_1:46327608-46327627 Msa0550770:CDS 45.0%
AAGAACCCAAATCATCACGG+CGG + chr4_1:46327798-46327817 Msa0550770:CDS 45.0%
CTATTTCCTCTCGCTTTCCA+TGG - chr4_1:46327830-46327849 None:intergenic 45.0%
CATGGAAAGCGAGAGGAAAT+AGG + chr4_1:46327828-46327847 Msa0550770:CDS 45.0%
GTTTCGTCGAAGGATTGTTG+TGG + chr4_1:46327864-46327883 Msa0550770:three_prime_UTR 45.0%
AATGTCCAGTCCTTGGGTAT+CGG - chr4_1:46327932-46327951 None:intergenic 45.0%
CAGTACAATGTCCAGTCCTT+GGG - chr4_1:46327938-46327957 None:intergenic 45.0%
! GTACTGGCAGATGAGAATTC+CGG + chr4_1:46327952-46327971 Msa0550770:three_prime_UTR 45.0%
TACTGGCAGATGAGAATTCC+GGG + chr4_1:46327953-46327972 Msa0550770:three_prime_UTR 45.0%
!! ATTCCGGGATTGTCGATTTC+TGG + chr4_1:46327968-46327987 Msa0550770:three_prime_UTR 45.0%
GATCCAGAAATCGACAATCC+CGG - chr4_1:46327974-46327993 None:intergenic 45.0%
GGAACACTTGTATGAGGTTG+TGG + chr4_1:46327996-46328015 Msa0550770:three_prime_UTR 45.0%
! AAGACTTCATCCTCTAGCTC+TGG - chr4_1:46328036-46328055 None:intergenic 45.0%
! GAAGATGACGGTGACGGTAA+CGG - chr4_1:46325489-46325508 None:intergenic 50.0%
!! GTTTTTGGAAGGGATGGGTG+AGG - chr4_1:46325579-46325598 None:intergenic 50.0%
!! GAACGGGTTTTTGGAAGGGA+TGG - chr4_1:46325585-46325604 None:intergenic 50.0%
AAAGCGCGGGAAGAAAAAGG+GGG - chr4_1:46325627-46325646 None:intergenic 50.0%
! AGGGATGTAGGAAAAAGCGC+GGG - chr4_1:46325640-46325659 None:intergenic 50.0%
GAGGGATGTAGGAAAAAGCG+CGG - chr4_1:46325641-46325660 None:intergenic 50.0%
GGAAGAAAGAGGAGGGATGT+AGG - chr4_1:46325652-46325671 None:intergenic 50.0%
! AGTGCCGAGTTTGAGTGTGA+AGG + chr4_1:46325854-46325873 Msa0550770:CDS 50.0%
!!! TGGCCTTGGGGGTATTTTGT+TGG + chr4_1:46326574-46326593 Msa0550770:intron 50.0%
GTGGCATTGCATGCAAAGCA+TGG + chr4_1:46326936-46326955 Msa0550770:intron 50.0%
ACAGTCAAACCAGTGGCCAA+CGG - chr4_1:46326984-46327003 None:intergenic 50.0%
TCCAGTGACAGTCAAACCAG+TGG - chr4_1:46326991-46327010 None:intergenic 50.0%
AGAACCCAAATCATCACGGC+GGG + chr4_1:46327799-46327818 Msa0550770:CDS 50.0%
TGCGTACATACCGATACCCA+AGG + chr4_1:46327919-46327938 Msa0550770:three_prime_UTR 50.0%
ACATACCGATACCCAAGGAC+TGG + chr4_1:46327924-46327943 Msa0550770:three_prime_UTR 50.0%
CCAGTACAATGTCCAGTCCT+TGG - chr4_1:46327939-46327958 None:intergenic 50.0%
CCAAGGACTGGACATTGTAC+TGG + chr4_1:46327936-46327955 Msa0550770:three_prime_UTR 50.0%
TGCTTTGTGACCAGAGCTAG+AGG + chr4_1:46328023-46328042 Msa0550770:three_prime_UTR 50.0%
GTTGTGAACGGAGAACGACG+AGG - chr4_1:46325464-46325483 None:intergenic 55.0%
! ACGGTAACGGCGGTTGTGAA+CGG - chr4_1:46325476-46325495 None:intergenic 55.0%
!! TCCGATTTGCTACGGTGGTC+TGG + chr4_1:46326506-46326525 Msa0550770:intron 55.0%
GCCAGACCACCGTAGCAAAT+CGG - chr4_1:46326510-46326529 None:intergenic 55.0%
TGGTCTGGCGCCACTATAGA+TGG + chr4_1:46326521-46326540 Msa0550770:intron 55.0%
TTGCAGCAGCTGCGTGACAA+TGG - chr4_1:46326870-46326889 None:intergenic 55.0%
GACAACTTTCCGTTGGCCAC+TGG + chr4_1:46326972-46326991 Msa0550770:intron 55.0%
!! GCCACTGGTTTGACTGTCAC+TGG + chr4_1:46326987-46327006 Msa0550770:intron 55.0%
! GCAACTGGTTCAGTGACCGT+TGG + chr4_1:46327555-46327574 Msa0550770:CDS 55.0%
TCAGTGACCGTTGGCCAGAT+TGG + chr4_1:46327564-46327583 Msa0550770:CDS 55.0%
GGTTCGACCAATCTGGCCAA+CGG - chr4_1:46327574-46327593 None:intergenic 55.0%
GAACCCAAATCATCACGGCG+GGG + chr4_1:46327800-46327819 Msa0550770:CDS 55.0%
GAACCCCGCCGTGATGATTT+GGG - chr4_1:46327806-46327825 None:intergenic 55.0%
GAGAACGACGAGGAGGTGAG+AGG - chr4_1:46325454-46325473 None:intergenic 60.0%
GTGAACGGAGAACGACGAGG+AGG - chr4_1:46325461-46325480 None:intergenic 60.0%
! GATGACGGTGACGGTAACGG+CGG - chr4_1:46325486-46325505 None:intergenic 60.0%
GCGGGAAGAAAAAGGGGGTG+TGG - chr4_1:46325622-46325641 None:intergenic 60.0%
GTCACGCAGCTGCTGCAAAG+TGG + chr4_1:46326872-46326891 Msa0550770:intron 60.0%
CGAACCCCGCCGTGATGATT+TGG - chr4_1:46327807-46327826 None:intergenic 60.0%
GGTTCGCCATGGAAAGCGAG+AGG + chr4_1:46327821-46327840 Msa0550770:CDS 60.0%
CATCACGGCGGGGTTCGCCA+TGG + chr4_1:46327810-46327829 Msa0550770:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46325393 46328257 46325393 ID=Msa0550770;Name=Msa0550770
chr4_1 mRNA 46325393 46328257 46325393 ID=Msa0550770-mRNA-1;Parent=Msa0550770;Name=Msa0550770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=36|1|1|1|1|1|3|401|286
chr4_1 exon 46325393 46326010 46325393 ID=Msa0550770-mRNA-1:exon:12395;Parent=Msa0550770-mRNA-1
chr4_1 exon 46327495 46327704 46327495 ID=Msa0550770-mRNA-1:exon:12396;Parent=Msa0550770-mRNA-1
chr4_1 exon 46327788 46328257 46327788 ID=Msa0550770-mRNA-1:exon:12397;Parent=Msa0550770-mRNA-1
chr4_1 five_prime_UTR 46325393 46325428 46325393 ID=Msa0550770-mRNA-1:five_prime_utr;Parent=Msa0550770-mRNA-1
chr4_1 CDS 46325429 46326010 46325429 ID=Msa0550770-mRNA-1:cds;Parent=Msa0550770-mRNA-1
chr4_1 CDS 46327495 46327704 46327495 ID=Msa0550770-mRNA-1:cds;Parent=Msa0550770-mRNA-1
chr4_1 CDS 46327788 46327856 46327788 ID=Msa0550770-mRNA-1:cds;Parent=Msa0550770-mRNA-1
chr4_1 three_prime_UTR 46327857 46328257 46327857 ID=Msa0550770-mRNA-1:three_prime_utr;Parent=Msa0550770-mRNA-1
Gene Sequence

>Msa0550770

ATGACGGCATCATCATCAGTATCCTCTCACCTCCTCGTCGTTCTCCGTTCACAACCGCCGTTACCGTCACCGTCATCTTCCTCTTTCATTTCATTTCTCAAACCTCTCTTTATTCCTTCTTCCAATATTACCCTTCGAAAATTTCACCCTCACCCATCCCTTCCAAAAACCCGTTCACCATATTTCTTATCCACACCCCCTTTTTCTTCCCGCGCTTTTTCCTACATCCCTCCTCTTTCTTCCTTCGTTGAAGGTTCAACTTCAAAATCCATAGAAGAAGACGAAATTGAAGATGAATATGATGAAGAAAGAGATGAATTTGAAAGTGAAAGAGAGAATTATGAAGATACCAAAGTGATGGTGGATGAGAGTGAAACTACATCGTCGCCATTGGTGACAAAGAGAGAAGAGAGATTGAAACTGGAAGTGCCGAGTTTGAGTGTGAAGGAAAGGAAAGAACTTGGGTCTTATGCACATAGTTTGGGGAAAAAGCTTAGCACACAATTGGTGGGTAAGTCTGGTGTTACACCCAATCTTATTACTGCTTTCAGTGATAACCTTGAAGCTAATGAACTTCTTAAGATTAAAATACACGGGAGTTGTCCAGGTGAGTTAGAAGATGTTGTGAAGCAGTTGGAAGAAGCAACTGGTTCAGTGACCGTTGGCCAGATTGGTCGAACCCTTATTTTATACAGGCCTAGTCTCTCCAAATTGAAGGTAGAAGAAAAGAAGAAACAAGTTCGGAAACTTTTTCTGGAAAAACAAAATAAACGAAGACTACTAATAAACAGGAGTAGGGAACAAGAACCCAAATCATCACGGCGGGGTTCGCCATGGAAAGCGAGAGGAAATAGGTCATAA

Protein sequence

>Msa0550770

MTASSSVSSHLLVVLRSQPPLPSPSSSSFISFLKPLFIPSSNITLRKFHPHPSLPKTRSPYFLSTPPFSSRAFSYIPPLSSFVEGSTSKSIEEDEIEDEYDEERDEFESERENYEDTKVMVDESETTSSPLVTKREERLKLEVPSLSVKERKELGSYAHSLGKKLSTQLVGKSGVTPNLITAFSDNLEANELLKIKIHGSCPGELEDVVKQLEEATGSVTVGQIGRTLILYRPSLSKLKVEEKKKQVRKLFLEKQNKRRLLINRSREQEPKSSRRGSPWKARGNRS*