AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1105680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105680 MtrunA17_Chr7g0237811 94.828 174 9 0 1 174 1 174 3.71e-111 313
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105680 AT4G13220.1 57.616 151 57 4 29 174 28 176 3.98e-50 159

Find 41 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTACAGCTTTCTTTATTT+TGG 0.099548 7_3:-44464969 Msa1105680:intron
CTTTAACTTCAAAACCGAAT+TGG 0.273391 7_3:+44467351 None:intergenic
GTTACTGAAATCCTTGCTAT+TGG 0.328579 7_3:+44465037 None:intergenic
TTTAACTTCAAAACCGAATT+GGG 0.351112 7_3:+44467352 None:intergenic
TCAATTTCGTTCACCCAATT+CGG 0.375040 7_3:-44467365 Msa1105680:CDS
ATCCTTTGGAAGAGGCTAAT+AGG 0.388720 7_3:-44464128 Msa1105680:CDS
CTTGATCTTTATTGAATGCT+AGG 0.393502 7_3:+44464196 None:intergenic
GAAATCTTGAATTGAGTGTT+TGG 0.402184 7_3:+44467313 None:intergenic
GAAATCCTTGCTATTGGTCT+TGG 0.422289 7_3:+44465043 None:intergenic
CAAAGGATCATCCATAGGTT+TGG 0.442636 7_3:+44464143 None:intergenic
CAAACCTATGGATGATCCTT+TGG 0.442745 7_3:-44464142 Msa1105680:CDS
GGAAGAGGCTAATAGGATAA+TGG 0.446378 7_3:-44464121 Msa1105680:CDS
TTGCTTTCAAAATCGAAACT+TGG 0.450223 7_3:-44467401 Msa1105680:CDS
GCATGGAGAGTTGGTAAGGA+TGG 0.452265 7_3:-44465402 Msa1105680:CDS
CAAGAACCACCTAGCGGGAA+TGG 0.467436 7_3:-44464177 Msa1105680:CDS
GAACAATCGAATTTATCTAA+AGG 0.487407 7_3:-44467250 Msa1105680:intron
AACACAGGAGAACAAACATT+AGG 0.513207 7_3:+44467564 None:intergenic
GTTTGTTCATAGGCTACCAT+AGG 0.522734 7_3:-44464237 Msa1105680:intron
CTGCAGAATGCATGGAGAGT+TGG 0.536539 7_3:-44465411 Msa1105680:CDS
TGGGTGAACGAAATTGATGA+TGG 0.537607 7_3:+44467371 None:intergenic
AGGAACTACGACCAAACCTA+TGG 0.545163 7_3:-44464154 Msa1105680:CDS
GGTAAGGATGGAATTGATGC+AGG 0.549168 7_3:-44465390 Msa1105680:CDS
TGCAAAGTATGCAAGTCCTA+TGG 0.552339 7_3:+44464221 None:intergenic
GGTGCACGTGGGAATGGAAG+AGG 0.555504 7_3:+44467527 None:intergenic
AGATAGTTCTGCAGAATGCA+TGG 0.555735 7_3:-44465419 Msa1105680:intron
AAGATCAAGAACCACCTAGC+GGG 0.560815 7_3:-44464182 Msa1105680:CDS
ATCCTATTAGCCTCTTCCAA+AGG 0.564567 7_3:+44464126 None:intergenic
TATGGATGATCCTTTGGAAG+AGG 0.564870 7_3:-44464136 Msa1105680:CDS
AAAGTTGTGAACAAAACCAT+TGG 0.570596 7_3:+44467438 None:intergenic
GTAGTTCCTCCATTCCCGCT+AGG 0.572693 7_3:+44464168 None:intergenic
TCTTCCAAAGGATCATCCAT+AGG 0.581655 7_3:+44464138 None:intergenic
GAACGAAATTGATGATGGGT+AGG 0.599016 7_3:+44467376 None:intergenic
GAATGCATGGAGAGTTGGTA+AGG 0.601699 7_3:-44465406 Msa1105680:CDS
AAATAAAGAAAGCTGTAGAG+AGG 0.616626 7_3:+44464972 None:intergenic
GTTCCTCCATTCCCGCTAGG+TGG 0.621366 7_3:+44464171 None:intergenic
GAACCACCTAGCGGGAATGG+AGG 0.633606 7_3:-44464174 Msa1105680:CDS
CTGTACCAAGACCAATAGCA+AGG 0.633937 7_3:-44465048 Msa1105680:CDS
GGGTGAACGAAATTGATGAT+GGG 0.652854 7_3:+44467372 None:intergenic
GTATAGTATGAATGAAACAC+AGG 0.662732 7_3:+44467549 None:intergenic
AAAACTACGAAATTGGAGCG+AGG 0.691122 7_3:+44467277 None:intergenic
AAAGATCAAGAACCACCTAG+CGG 0.725332 7_3:-44464183 Msa1105680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATATGATATGAAAAA+TGG + chr7_3:44466734-44466753 None:intergenic 10.0%
!! TAAACAATTAATGAAAATTG+AGG + chr7_3:44464449-44464468 None:intergenic 15.0%
!!! TGTTTATAAACAAGTTATTT+TGG - chr7_3:44464463-44464482 Msa1105680:intron 15.0%
!! TATTTAAGTAAAGAATAGTT+TGG - chr7_3:44464678-44464697 Msa1105680:intron 15.0%
!! TATTATTCATAAATGTGTAA+AGG - chr7_3:44464771-44464790 Msa1105680:intron 15.0%
!! AGGAATTATATTAATTGAAT+AGG - chr7_3:44464928-44464947 Msa1105680:intron 15.0%
!!! TTCATTTTTTATTATCTTTG+TGG - chr7_3:44466222-44466241 Msa1105680:intron 15.0%
!! TAGTTTGGTTAATTAGATTT+AGG - chr7_3:44464502-44464521 Msa1105680:intron 20.0%
!!! TGATGTTAGCATAAATTTTA+TGG - chr7_3:44464614-44464633 Msa1105680:intron 20.0%
!! AAAATTGTATCTTCATAAAC+TGG + chr7_3:44464811-44464830 None:intergenic 20.0%
!!! TTAACTTCTTTTTTTTACGA+AGG + chr7_3:44465157-44465176 None:intergenic 20.0%
!! ATTCTTATTCTAAATTGAAC+TGG - chr7_3:44465190-44465209 Msa1105680:intron 20.0%
!!! CAACATATTTTAAAGGTTTT+CGG + chr7_3:44465334-44465353 None:intergenic 20.0%
!!! TCTCAAGAAAAAGTTTATTT+TGG - chr7_3:44465479-44465498 Msa1105680:intron 20.0%
!!! CTCAAGAAAAAGTTTATTTT+GGG - chr7_3:44465480-44465499 Msa1105680:intron 20.0%
!! AATAAAACCTTAATCATACA+TGG + chr7_3:44465819-44465838 None:intergenic 20.0%
!!! TGTATGATTAAGGTTTTATT+TGG - chr7_3:44465819-44465838 Msa1105680:intron 20.0%
!!! AATTTTATGTCCTTCATAAT+TGG - chr7_3:44466135-44466154 Msa1105680:intron 20.0%
!!! ATTTTATGTCCTTCATAATT+GGG - chr7_3:44466136-44466155 Msa1105680:intron 20.0%
!! AATATGATATGAAAAATGGA+TGG + chr7_3:44466730-44466749 None:intergenic 20.0%
!! ATAGTTGAGACTTATTTATA+GGG + chr7_3:44466892-44466911 None:intergenic 20.0%
!! AATAGTTGAGACTTATTTAT+AGG + chr7_3:44466893-44466912 None:intergenic 20.0%
!! ATATATACTGTTATGAATCA+TGG + chr7_3:44467039-44467058 None:intergenic 20.0%
!! TTCCCTTTAATAACATAATA+TGG + chr7_3:44467100-44467119 None:intergenic 20.0%
!!! ATGTTGTTTTGATTGGTTTT+AGG + chr7_3:44464166-44464185 None:intergenic 25.0%
!!! CTAAACAATGTTGTTTTGAT+TGG + chr7_3:44464173-44464192 None:intergenic 25.0%
!! TTTAACTTCAAAACCGAATT+GGG + chr7_3:44464320-44464339 None:intergenic 25.0%
! GAACAATCGAATTTATCTAA+AGG - chr7_3:44464419-44464438 Msa1105680:intron 25.0%
! TTCATGTATTTCTCTTAGTT+TGG - chr7_3:44464487-44464506 Msa1105680:intron 25.0%
! TAGGTTGTAATGTTTAAAAG+AGG - chr7_3:44464521-44464540 Msa1105680:intron 25.0%
! TAATGTTTAAAAGAGGTGAA+GGG - chr7_3:44464528-44464547 Msa1105680:intron 25.0%
! AATTAGTTGAAGTTGTTACT+AGG + chr7_3:44464968-44464987 None:intergenic 25.0%
! TTCTAAATTGAACTGGTTAA+TGG - chr7_3:44465197-44465216 Msa1105680:intron 25.0%
!!! CAAGGTACAACATATTTTAA+AGG + chr7_3:44465341-44465360 None:intergenic 25.0%
! AATATGTTGTACCTTGATTA+AGG - chr7_3:44465345-44465364 Msa1105680:intron 25.0%
! AAACATAAAGACCTTAATCA+AGG + chr7_3:44465359-44465378 None:intergenic 25.0%
! TGATTAAGGTCTTTATGTTT+AGG - chr7_3:44465359-44465378 Msa1105680:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+CGG - chr7_3:44466070-44466089 Msa1105680:intron 25.0%
! AAAATGAAAGAGCAATAGTT+AGG + chr7_3:44466210-44466229 None:intergenic 25.0%
! TTGTACTAAATCACTTATTG+CGG + chr7_3:44466408-44466427 None:intergenic 25.0%
! GTAAAAAACTTGAAAACAAC+AGG + chr7_3:44466532-44466551 None:intergenic 25.0%
! ATAGTGAATAAACCATAGTT+AGG - chr7_3:44466804-44466823 Msa1105680:intron 25.0%
! TAGTTGAGACTTATTTATAG+GGG + chr7_3:44466891-44466910 None:intergenic 25.0%
! TGGCCATATTATGTTATTAA+AGG - chr7_3:44467094-44467113 Msa1105680:intron 25.0%
! GGCCATATTATGTTATTAAA+GGG - chr7_3:44467095-44467114 Msa1105680:intron 25.0%
! AAAAATTCAACCCTACAAAA+GGG + chr7_3:44467151-44467170 None:intergenic 25.0%
! AAAAAATTCAACCCTACAAA+AGG + chr7_3:44467152-44467171 None:intergenic 25.0%
!!! TACAAAGTATTGTCAAACAA+CGG - chr7_3:44467254-44467273 Msa1105680:CDS 25.0%
!! AACATCAATGCTATATTTTG+TGG - chr7_3:44467393-44467412 Msa1105680:CDS 25.0%
GTATAGTATGAATGAAACAC+AGG + chr7_3:44464123-44464142 None:intergenic 30.0%
AGAACAAAAATGTTTGCCAA+TGG - chr7_3:44464215-44464234 Msa1105680:CDS 30.0%
AAAGTTGTGAACAAAACCAT+TGG + chr7_3:44464234-44464253 None:intergenic 30.0%
!! TTTCGATTTTGAAAGCAACA+TGG + chr7_3:44464266-44464285 None:intergenic 30.0%
TTGCTTTCAAAATCGAAACT+TGG - chr7_3:44464268-44464287 Msa1105680:intron 30.0%
! CTTTAACTTCAAAACCGAAT+TGG + chr7_3:44464321-44464340 None:intergenic 30.0%
GAAATCTTGAATTGAGTGTT+TGG + chr7_3:44464359-44464378 None:intergenic 30.0%
TTCTGCAAAAACTACGAAAT+TGG + chr7_3:44464402-44464421 None:intergenic 30.0%
GTAATGTTTAAAAGAGGTGA+AGG - chr7_3:44464527-44464546 Msa1105680:intron 30.0%
AAGATAAGTCAATCCATAGA+GGG - chr7_3:44464899-44464918 Msa1105680:intron 30.0%
ACATTACATTAGCATGATCT+TGG - chr7_3:44465291-44465310 Msa1105680:intron 30.0%
!!! GTTTATTTTGGGATGTAAGA+TGG - chr7_3:44465491-44465510 Msa1105680:intron 30.0%
! ATTTTCACTTGGCATATACA+AGG + chr7_3:44465572-44465591 None:intergenic 30.0%
! TTCTCTGTGAAATTTTCACT+TGG + chr7_3:44465583-44465602 None:intergenic 30.0%
! ACGAAAACTAGGTACATTTT+AGG + chr7_3:44465626-44465645 None:intergenic 30.0%
AAGATATGATCCTTTCATGA+TGG - chr7_3:44465664-44465683 Msa1105680:intron 30.0%
AATACAGTAACCATCATGAA+AGG + chr7_3:44465677-44465696 None:intergenic 30.0%
CAAAAGACAAAGCAATTATC+AGG + chr7_3:44465708-44465727 None:intergenic 30.0%
! CTGATAATTGCTTTGTCTTT+TGG - chr7_3:44465706-44465725 Msa1105680:intron 30.0%
!! TTGTCTTTTGGAAATTCATG+TGG - chr7_3:44465718-44465737 Msa1105680:intron 30.0%
!! TGTCTTTTGGAAATTCATGT+GGG - chr7_3:44465719-44465738 Msa1105680:intron 30.0%
! TGGTGTTTTCCTTTCAAAAT+AGG + chr7_3:44465799-44465818 None:intergenic 30.0%
GAAAACACCATGTATGATTA+AGG - chr7_3:44465809-44465828 Msa1105680:intron 30.0%
! TCTTAAAGTGCTTACATCAT+TGG + chr7_3:44465865-44465884 None:intergenic 30.0%
!! CTTATTTTCATTAGCTCTCT+AGG - chr7_3:44465940-44465959 Msa1105680:intron 30.0%
TTCATTGTTCAACAAGTCTT+AGG + chr7_3:44466096-44466115 None:intergenic 30.0%
TTAAGTGTTCCCAATTATGA+AGG + chr7_3:44466148-44466167 None:intergenic 30.0%
AATGGTAATTGTGACTTACA+GGG + chr7_3:44466317-44466336 None:intergenic 30.0%
AAATGGTAATTGTGACTTAC+AGG + chr7_3:44466318-44466337 None:intergenic 30.0%
TAAGTCACAATTACCATTTC+CGG - chr7_3:44466319-44466338 Msa1105680:intron 30.0%
TAGCAGATATTTGTGCTATA+TGG - chr7_3:44466353-44466372 Msa1105680:intron 30.0%
ATATTTGTGCTATATGGTAG+CGG - chr7_3:44466359-44466378 Msa1105680:intron 30.0%
GAGAAACATGAAAAACTAGA+AGG + chr7_3:44466568-44466587 None:intergenic 30.0%
! AAGGATTTCAGTAACTTTTG+TGG - chr7_3:44466640-44466659 Msa1105680:intron 30.0%
AAATAAAGAAAGCTGTAGAG+AGG + chr7_3:44466700-44466719 None:intergenic 30.0%
!! CTCTACAGCTTTCTTTATTT+TGG - chr7_3:44466700-44466719 Msa1105680:intron 30.0%
GTTCACATATAACCTAACTA+TGG + chr7_3:44466819-44466838 None:intergenic 30.0%
GTTAGGTTATATGTGAACTA+TGG - chr7_3:44466821-44466840 Msa1105680:intron 30.0%
! CTATGGTTAGTTAGTTAGTT+AGG - chr7_3:44466838-44466857 Msa1105680:intron 30.0%
! ATATGTCTTTTCCCTTTTGT+AGG - chr7_3:44467137-44467156 Msa1105680:intron 30.0%
! TATGTCTTTTCCCTTTTGTA+GGG - chr7_3:44467138-44467157 Msa1105680:intron 30.0%
TATCCTAAAGTCTTAACCAT+CGG + chr7_3:44467360-44467379 None:intergenic 30.0%
CAAGTACATTGTTTGTTCAT+AGG - chr7_3:44467422-44467441 Msa1105680:CDS 30.0%
CTTGATCTTTATTGAATGCT+AGG + chr7_3:44467476-44467495 None:intergenic 30.0%
AACACAGGAGAACAAACATT+AGG + chr7_3:44464108-44464127 None:intergenic 35.0%
TCAATTTCGTTCACCCAATT+CGG - chr7_3:44464304-44464323 Msa1105680:intron 35.0%
CACAGGAAAAAACAATTGCA+AGG + chr7_3:44464580-44464599 None:intergenic 35.0%
!!! CTTGCAATTGTTTTTTCCTG+TGG - chr7_3:44464578-44464597 Msa1105680:intron 35.0%
! TCAATACTAGAGTTTTCCAC+AGG + chr7_3:44464597-44464616 None:intergenic 35.0%
!! TTTGGTGTTAAGTGTCTGTT+TGG - chr7_3:44464696-44464715 Msa1105680:intron 35.0%
TGTTAAGTGTCTGTTTGGAT+TGG - chr7_3:44464701-44464720 Msa1105680:intron 35.0%
GAAGATAAGTCAATCCATAG+AGG - chr7_3:44464898-44464917 Msa1105680:intron 35.0%
AATTCCTTAATGTCCCTCTA+TGG + chr7_3:44464915-44464934 None:intergenic 35.0%
CATTTGCCAATATGAAGTGT+CGG - chr7_3:44465111-44465130 Msa1105680:intron 35.0%
!! TGAGTGTCACTTCTACAAAT+TGG + chr7_3:44465242-44465261 None:intergenic 35.0%
TTGTAGAAGTGACACTCATT+TGG - chr7_3:44465244-44465263 Msa1105680:intron 35.0%
TAAAGATTGCTTGACCTAGA+TGG - chr7_3:44465441-44465460 Msa1105680:intron 35.0%
TTAAGAGTTTGATGCCATCT+AGG + chr7_3:44465458-44465477 None:intergenic 35.0%
AAAGGATCATATCTTCCAAG+TGG + chr7_3:44465659-44465678 None:intergenic 35.0%
GAGTTTATGCATTTGTGATG+AGG - chr7_3:44465770-44465789 Msa1105680:intron 35.0%
!! ATGAGGCATCCTATTTTGAA+AGG - chr7_3:44465787-44465806 Msa1105680:intron 35.0%
!! GTAAGCACTTTAAGACTGTT+TGG - chr7_3:44465870-44465889 Msa1105680:intron 35.0%
AAGTCACAATTACCATTTCC+GGG - chr7_3:44466320-44466339 Msa1105680:intron 35.0%
! TACAAAGTCTTGTCGAATAG+TGG - chr7_3:44466423-44466442 Msa1105680:intron 35.0%
TCTAGCATCAGCAAAAAGAA+GGG + chr7_3:44466598-44466617 None:intergenic 35.0%
TTCTAGCATCAGCAAAAAGA+AGG + chr7_3:44466599-44466618 None:intergenic 35.0%
! GTTACTGAAATCCTTGCTAT+TGG + chr7_3:44466635-44466654 None:intergenic 35.0%
TACTCTACTATGAGTCACTA+TGG - chr7_3:44466945-44466964 Msa1105680:intron 35.0%
ACTCTACTATGAGTCACTAT+GGG - chr7_3:44466946-44466965 Msa1105680:intron 35.0%
TAGCATAGGTGTATTCATGT+GGG + chr7_3:44466977-44466996 None:intergenic 35.0%
ATAGCATAGGTGTATTCATG+TGG + chr7_3:44466978-44466997 None:intergenic 35.0%
ATCAGCAAGAAAGATAGCAT+AGG + chr7_3:44466991-44467010 None:intergenic 35.0%
ATCATTATGACCTTTATCCC+TGG - chr7_3:44467009-44467028 Msa1105680:intron 35.0%
TCATTATGACCTTTATCCCT+GGG - chr7_3:44467010-44467029 Msa1105680:intron 35.0%
TTATGAATCATGGAATCCCA+GGG + chr7_3:44467029-44467048 None:intergenic 35.0%
ACATGAATGAACATGGCAAT+TGG + chr7_3:44467072-44467091 None:intergenic 35.0%
CTTAAAGCCACTGTTTCAAA+CGG - chr7_3:44467175-44467194 Msa1105680:intron 35.0%
ATCCTAAAGTCTTAACCATC+GGG + chr7_3:44467359-44467378 None:intergenic 35.0%
!! GAACGAAATTGATGATGGGT+AGG + chr7_3:44464296-44464315 None:intergenic 40.0%
! GGGTGAACGAAATTGATGAT+GGG + chr7_3:44464300-44464319 None:intergenic 40.0%
TGGGTGAACGAAATTGATGA+TGG + chr7_3:44464301-44464320 None:intergenic 40.0%
AAAACTACGAAATTGGAGCG+AGG + chr7_3:44464395-44464414 None:intergenic 40.0%
AAGAGGTGAAGGGATGTTAA+TGG - chr7_3:44464538-44464557 Msa1105680:intron 40.0%
AGAGGTGAAGGGATGTTAAT+GGG - chr7_3:44464539-44464558 Msa1105680:intron 40.0%
CAATCCATAGAGGGACATTA+AGG - chr7_3:44464908-44464927 Msa1105680:intron 40.0%
GAAGTTGTTACTAGGTGACT+AGG + chr7_3:44464960-44464979 None:intergenic 40.0%
CTGCATGGTGCATAATATGT+GGG - chr7_3:44465068-44465087 Msa1105680:intron 40.0%
TATGTGGGTACTACATAGCT+AGG - chr7_3:44465083-44465102 Msa1105680:intron 40.0%
ATGTGGGTACTACATAGCTA+GGG - chr7_3:44465084-44465103 Msa1105680:intron 40.0%
!! TGATCTTGGATTAGCGAGTT+AGG - chr7_3:44465305-44465324 Msa1105680:intron 40.0%
! GATGGCTAGTAACCATTTTC+TGG - chr7_3:44465509-44465528 Msa1105680:intron 40.0%
GAAACATCAACGCCAGAAAA+TGG + chr7_3:44465524-44465543 None:intergenic 40.0%
AGAGCAATAGTTAGGCTTTC+TGG + chr7_3:44466202-44466221 None:intergenic 40.0%
! AGATAGTTCTGCAGAATGCA+TGG - chr7_3:44466250-44466269 Msa1105680:intron 40.0%
TATTTGACAATGCCCGGAAA+TGG + chr7_3:44466335-44466354 None:intergenic 40.0%
! ATCTGCTATTTGACAATGCC+CGG + chr7_3:44466341-44466360 None:intergenic 40.0%
ATCACTTATTGCGGAACAAC+AGG + chr7_3:44466399-44466418 None:intergenic 40.0%
TCGAATAGTGGCTATAACAG+TGG - chr7_3:44466435-44466454 Msa1105680:intron 40.0%
!!! ACAGGCAGTTTTTTCAATCG+CGG + chr7_3:44466514-44466533 None:intergenic 40.0%
!! GAAATCCTTGCTATTGGTCT+TGG + chr7_3:44466629-44466648 None:intergenic 40.0%
GTTATGAATCATGGAATCCC+AGG + chr7_3:44467030-44467049 None:intergenic 40.0%
TGCCATGTTCATTCATGTAC+TGG - chr7_3:44467074-44467093 Msa1105680:intron 40.0%
!! GGGAGACTTGTTGTCAATTA+CGG + chr7_3:44467337-44467356 None:intergenic 40.0%
TCCTAAAGTCTTAACCATCG+GGG + chr7_3:44467358-44467377 None:intergenic 40.0%
GTTTGTTCATAGGCTACCAT+AGG - chr7_3:44467432-44467451 Msa1105680:CDS 40.0%
TGCAAAGTATGCAAGTCCTA+TGG + chr7_3:44467451-44467470 None:intergenic 40.0%
AAAGATCAAGAACCACCTAG+CGG - chr7_3:44467486-44467505 Msa1105680:five_prime_UTR 40.0%
CAAAGGATCATCCATAGGTT+TGG + chr7_3:44467529-44467548 None:intergenic 40.0%
CAAACCTATGGATGATCCTT+TGG - chr7_3:44467527-44467546 Msa1105680:five_prime_UTR 40.0%
TCTTCCAAAGGATCATCCAT+AGG + chr7_3:44467534-44467553 None:intergenic 40.0%
! TATGGATGATCCTTTGGAAG+AGG - chr7_3:44467533-44467552 Msa1105680:five_prime_UTR 40.0%
! ATCCTTTGGAAGAGGCTAAT+AGG - chr7_3:44467541-44467560 Msa1105680:five_prime_UTR 40.0%
! ATCCTATTAGCCTCTTCCAA+AGG + chr7_3:44467546-44467565 None:intergenic 40.0%
GGAAGAGGCTAATAGGATAA+TGG - chr7_3:44467548-44467567 Msa1105680:five_prime_UTR 40.0%
!!! GATTGGTTTTAGGTGCACGT+GGG + chr7_3:44464156-44464175 None:intergenic 45.0%
!!! TGATTGGTTTTAGGTGCACG+TGG + chr7_3:44464157-44464176 None:intergenic 45.0%
! CGAAATTGGAGCGAGGTTTT+AGG + chr7_3:44464388-44464407 None:intergenic 45.0%
CCACATATTATGCACCATGC+AGG + chr7_3:44465070-44465089 None:intergenic 45.0%
CCTGCATGGTGCATAATATG+TGG - chr7_3:44465067-44465086 Msa1105680:intron 45.0%
TGTGGGTACTACATAGCTAG+GGG - chr7_3:44465085-44465104 Msa1105680:intron 45.0%
!! GTAGCACCGACACTTCATAT+TGG + chr7_3:44465120-44465139 None:intergenic 45.0%
GTCATCGACACACGAAAACT+AGG + chr7_3:44465637-44465656 None:intergenic 45.0%
AACAAGTCTTAGGCCGTGTT+TGG + chr7_3:44466086-44466105 None:intergenic 45.0%
!! GAATGCATGGAGAGTTGGTA+AGG - chr7_3:44466263-44466282 Msa1105680:intron 45.0%
GGTAAGGATGGAATTGATGC+AGG - chr7_3:44466279-44466298 Msa1105680:intron 45.0%
GTTATAGCACTGCAGTGTAG+CGG - chr7_3:44466459-44466478 Msa1105680:intron 45.0%
CAATCGCGGATCACAGAAAA+TGG + chr7_3:44466500-44466519 None:intergenic 45.0%
CTGTACCAAGACCAATAGCA+AGG - chr7_3:44466621-44466640 Msa1105680:intron 45.0%
TCATGGAATCCCAGGGATAA+AGG + chr7_3:44467022-44467041 None:intergenic 45.0%
GGCCAGTACATGAATGAACA+TGG + chr7_3:44467079-44467098 None:intergenic 45.0%
! ATAGCTGCCGTTTGAAACAG+TGG + chr7_3:44467185-44467204 None:intergenic 45.0%
CCTAAAGTCTTAACCATCGG+GGG + chr7_3:44467357-44467376 None:intergenic 45.0%
AAGATCAAGAACCACCTAGC+GGG - chr7_3:44467487-44467506 Msa1105680:five_prime_UTR 45.0%
AGGAACTACGACCAAACCTA+TGG - chr7_3:44467515-44467534 Msa1105680:five_prime_UTR 45.0%
!! GTTTTAGGTGCACGTGGGAA+TGG + chr7_3:44464151-44464170 None:intergenic 50.0%
ACACGACACTCACACGTAGA+CGG - chr7_3:44465025-44465044 Msa1105680:CDS 50.0%
!! AGTGTCGGTGCTACATAGCT+AGG - chr7_3:44465126-44465145 Msa1105680:intron 50.0%
!! GTGTCGGTGCTACATAGCTA+GGG - chr7_3:44465127-44465146 Msa1105680:intron 50.0%
! TTCGTGTGTCGATGACCACT+TGG - chr7_3:44465641-44465660 Msa1105680:intron 50.0%
CTGCAGAATGCATGGAGAGT+TGG - chr7_3:44466258-44466277 Msa1105680:intron 50.0%
!! GCATGGAGAGTTGGTAAGGA+TGG - chr7_3:44466267-44466286 Msa1105680:intron 50.0%
CCCCCGATGGTTAAGACTTT+AGG - chr7_3:44467354-44467373 Msa1105680:CDS 50.0%
GTGGCGTTGCTTGCTTCACT+GGG + chr7_3:44464998-44465017 None:intergenic 55.0%
TGTGGCGTTGCTTGCTTCAC+TGG + chr7_3:44464999-44465018 None:intergenic 55.0%
! TGAGTGTCGTGTCAGGTGTG+TGG + chr7_3:44465017-44465036 None:intergenic 55.0%
! CTACGTGTGAGTGTCGTGTC+AGG + chr7_3:44465024-44465043 None:intergenic 55.0%
CACGACACTCACACGTAGAC+GGG - chr7_3:44465026-44465045 Msa1105680:CDS 55.0%
! CACTCACACGTAGACGGGTT+TGG - chr7_3:44465031-44465050 Msa1105680:CDS 55.0%
! AGACGGGTTTGGATCCCCTA+TGG - chr7_3:44465042-44465061 Msa1105680:CDS 55.0%
! TGCACCATGCAGGTGCCATA+GGG + chr7_3:44465060-44465079 None:intergenic 55.0%
! ATGCACCATGCAGGTGCCAT+AGG + chr7_3:44465061-44465080 None:intergenic 55.0%
TGACAACAAGTCTCCCCCGA+TGG - chr7_3:44467341-44467360 Msa1105680:CDS 55.0%
CAAGAACCACCTAGCGGGAA+TGG - chr7_3:44467492-44467511 Msa1105680:five_prime_UTR 55.0%
GTAGTTCCTCCATTCCCGCT+AGG + chr7_3:44467504-44467523 None:intergenic 55.0%
GGTGCACGTGGGAATGGAAG+AGG + chr7_3:44464145-44464164 None:intergenic 60.0%
GATCCCCTATGGCACCTGCA+TGG - chr7_3:44465053-44465072 Msa1105680:CDS 60.0%
! GCACCATGCAGGTGCCATAG+GGG + chr7_3:44465059-44465078 None:intergenic 60.0%
GAACCACCTAGCGGGAATGG+AGG - chr7_3:44467495-44467514 Msa1105680:five_prime_UTR 60.0%
GTTCCTCCATTCCCGCTAGG+TGG + chr7_3:44467501-44467520 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 44464084 44467607 44464084 ID=Msa1105680;Name=Msa1105680
chr7_3 mRNA 44464084 44467607 44464084 ID=Msa1105680-mRNA-1;Parent=Msa1105680;Name=Msa1105680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=140|1|1|1|1|1|4|23|174
chr7_3 exon 44464084 44464247 44464084 ID=Msa1105680-mRNA-1:exon:9164;Parent=Msa1105680-mRNA-1
chr7_3 exon 44464970 44465074 44464970 ID=Msa1105680-mRNA-1:exon:9163;Parent=Msa1105680-mRNA-1
chr7_3 exon 44465374 44465435 44465374 ID=Msa1105680-mRNA-1:exon:9162;Parent=Msa1105680-mRNA-1
chr7_3 exon 44467251 44467607 44467251 ID=Msa1105680-mRNA-1:exon:9161;Parent=Msa1105680-mRNA-1
chr7_3 five_prime_UTR 44467468 44467607 44467468 ID=Msa1105680-mRNA-1:five_prime_utr;Parent=Msa1105680-mRNA-1
chr7_3 CDS 44467251 44467467 44467251 ID=Msa1105680-mRNA-1:cds;Parent=Msa1105680-mRNA-1
chr7_3 CDS 44465374 44465435 44465374 ID=Msa1105680-mRNA-1:cds;Parent=Msa1105680-mRNA-1
chr7_3 CDS 44464970 44465074 44464970 ID=Msa1105680-mRNA-1:cds;Parent=Msa1105680-mRNA-1
chr7_3 CDS 44464107 44464247 44464107 ID=Msa1105680-mRNA-1:cds;Parent=Msa1105680-mRNA-1
chr7_3 three_prime_UTR 44464084 44464106 44464084 ID=Msa1105680-mRNA-1:three_prime_utr;Parent=Msa1105680-mRNA-1
Gene Sequence

>Msa1105680

ATGTTTGCCAATGGTTTTGTTCACAACTTTAGTTCTGTTCCATGTTGCTTTCAAAATCGAAACTTGGCTCCTACCCATCATCAATTTCGTTCACCCAATTCGGTTTTGAAGTTAAAGAAGCAAACTTTACTGCCAAACACTCAATTCAAGATTTCTAGAAGCCTAAAACCTCGCTCCAATTTCGTAGTTTTTGCAGAACAATCGAATTTATCTAAAGTTCTGCAGAATGCATGGAGAGTTGGTAAGGATGGAATTGATGCAGGCACAAATCTAGTCCCTAATTCTGTACCAAGACCAATAGCAAGGATTTCAGTAACTTTTGTGGCTCTGAGTGCTTTGCTTTTTGTGTTCAAGTCTCTCCTCTCTACAGCTTTCTTTATTTTGGCTACCATAGGACTTGCATACTTTGCATACCTAGCATTCAATAAAGATCAAGAACCACCTAGCGGGAATGGAGGAACTACGACCAAACCTATGGATGATCCTTTGGAAGAGGCTAATAGGATAATGGATAAATATAAGTAG

Protein sequence

>Msa1105680

MFANGFVHNFSSVPCCFQNRNLAPTHHQFRSPNSVLKLKKQTLLPNTQFKISRSLKPRSNFVVFAEQSNLSKVLQNAWRVGKDGIDAGTNLVPNSVPRPIARISVTFVALSALLFVFKSLLSTAFFILATIGLAYFAYLAFNKDQEPPSGNGGTTTKPMDDPLEEANRIMDKYK*