AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0355590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355590 MtrunA17_Chr3g0092041 98.901 182 2 0 40 221 1 182 2.21e-135 377
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355590 AT1G18730.1 58.192 177 71 2 40 215 1 175 1.51e-66 203
Msa0355590 AT1G18730.3 57.627 177 71 2 40 215 1 174 2.49e-66 202
Msa0355590 AT1G18730.5 70.866 127 36 1 90 215 2 128 5.75e-63 192
Msa0355590 AT1G18730.2 52.518 139 62 2 40 177 1 136 9.20e-46 149
Msa0355590 AT1G18730.4 52.518 139 62 2 40 177 1 136 1.17e-45 149

Find 66 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGGTCCTTATGATATA+TGG 0.197318 3_1:-30214960 None:intergenic
GTTTGGGGAGTCTTATTCTT+TGG 0.250564 3_1:+30216049 Msa0355590:CDS
GTACATAATGTTCACTGTTT+GGG 0.251834 3_1:+30216033 Msa0355590:CDS
TGTGCATGCTTCCAACAAAT+TGG 0.273977 3_1:-30214889 None:intergenic
TATGTTTCTGAATCGTAATA+TGG 0.282914 3_1:-30216197 None:intergenic
TGGTCAATTGATGGACTAAA+AGG 0.295742 3_1:-30217821 None:intergenic
GGTTATGCAGCAAGAGGTTA+TGG 0.323069 3_1:+30217660 Msa0355590:intron
GGTACATAATGTTCACTGTT+TGG 0.337904 3_1:+30216032 Msa0355590:CDS
CTCACGCCACAGGGCTTCTC+TGG 0.342613 3_1:-30217692 None:intergenic
GAGGAGATGGCACTGGAAAC+TGG 0.350136 3_1:+30216231 Msa0355590:CDS
TTATAACCGAGAAAACAATT+TGG 0.357393 3_1:+30215737 Msa0355590:CDS
ATTGCCATCAGTGGAATATC+TGG 0.357533 3_1:-30215682 None:intergenic
CCTCTTTCACAGGTCATTGC+AGG 0.357586 3_1:+30215230 Msa0355590:CDS
ATTACGATTCAGAAACATAT+AGG 0.360570 3_1:+30216201 Msa0355590:CDS
TTACGATTCAGAAACATATA+GGG 0.363321 3_1:+30216202 Msa0355590:CDS
GGCAATTCTAGTAGAACAAT+TGG 0.375396 3_1:+30215699 Msa0355590:CDS
AACAAAACGATTTACAAGAT+TGG 0.386067 3_1:+30215084 Msa0355590:CDS
ACCGCGCAAATCCAATTTGT+TGG 0.399144 3_1:+30214878 None:intergenic
TTTGTAAATAAGGTGTTAGA+TGG 0.415388 3_1:+30215619 Msa0355590:intron
ACCATGGCCGAAGCTATCAT+TGG 0.453740 3_1:+30215019 Msa0355590:CDS
GGTATCACTTGGTCAATTGA+TGG 0.459374 3_1:-30217830 None:intergenic
ATGTTTCTGAATCGTAATAT+GGG 0.462762 3_1:-30216196 None:intergenic
TTATGGTCCTTATGATATAT+GGG 0.463330 3_1:-30214959 None:intergenic
ATCCCATCCCATATATCATA+AGG 0.468115 3_1:+30214952 Msa0355590:CDS
ACTTGAAGAAGCAGCAAAGA+AGG 0.487076 3_1:+30217759 Msa0355590:CDS
CTTATTCTTTGGTTCCATGA+AGG 0.490823 3_1:+30216060 Msa0355590:CDS
AATGTACTGTTATTAAACTA+CGG 0.491484 3_1:+30217906 Msa0355590:three_prime_UTR
CACAATATAAATCAATGAGC+AGG 0.505811 3_1:+30217951 Msa0355590:three_prime_UTR
GGAGATGGAGGAGATGGCAC+TGG 0.510554 3_1:+30216224 Msa0355590:CDS
CAATCAACTCCTCACGCCAC+AGG 0.510782 3_1:-30217702 None:intergenic
TGAAAGAGGGTAGAGTTTGA+AGG 0.517301 3_1:-30215216 None:intergenic
CATAATAATGAGGTATCACT+TGG 0.523201 3_1:-30217841 None:intergenic
TCAGAAACATATAGGGGAGA+TGG 0.524239 3_1:+30216209 Msa0355590:CDS
GCATCTATGTGCAAAGTGAA+TGG 0.524899 3_1:+30215655 Msa0355590:CDS
TTTAATCCTTTGCAGACGCT+TGG 0.529767 3_1:+30216011 Msa0355590:intron
GGTGAAACCAATGATAGCTT+CGG 0.532364 3_1:-30215026 None:intergenic
ATGAATATATGAATTGAAAA+CGG 0.534351 3_1:-30215047 None:intergenic
ACCAATGATAGCTTCGGCCA+TGG 0.534984 3_1:-30215020 None:intergenic
CAAACTCTACCCTCTTTCAC+AGG 0.545894 3_1:+30215220 Msa0355590:CDS
GGTCCTTATGATATATGGGA+TGG 0.548973 3_1:-30214955 None:intergenic
TACATAATGTTCACTGTTTG+GGG 0.555106 3_1:+30216034 Msa0355590:CDS
GTAGAGTTTGAAGGGTGCCT+AGG 0.557136 3_1:-30215207 None:intergenic
CCTGCAATGACCTGTGAAAG+AGG 0.564483 3_1:-30215230 None:intergenic
CAGAGAAGCCCTGTGGCGTG+AGG 0.566266 3_1:+30217693 Msa0355590:CDS
GTCCTTATGATATATGGGAT+GGG 0.567129 3_1:-30214954 None:intergenic
TATGTATATACATAATAATG+AGG 0.569260 3_1:-30217851 None:intergenic
GGAAGCATGCACATACTTGA+AGG 0.569486 3_1:+30214899 Msa0355590:exon
TTTACCAGATATTCCACTGA+TGG 0.571820 3_1:+30215678 Msa0355590:CDS
TATAGGGGAGATGGAGGAGA+TGG 0.574917 3_1:+30216218 Msa0355590:CDS
GCAAGAGGTTATGGAAGCAG+AGG 0.578491 3_1:+30217669 Msa0355590:intron
ATATATGGGATGGGATAGAG+TGG 0.583708 3_1:-30214945 None:intergenic
TCTACTAGAATTGCCATCAG+TGG 0.584764 3_1:-30215691 None:intergenic
GAAACATATAGGGGAGATGG+AGG 0.597630 3_1:+30216212 Msa0355590:CDS
GAAAGAGGGTAGAGTTTGAA+GGG 0.602642 3_1:-30215215 None:intergenic
AGAAGCAGCAAAGAAGGAGG+AGG 0.609366 3_1:+30217765 Msa0355590:CDS
AATCAACTCCTCACGCCACA+GGG 0.615196 3_1:-30217701 None:intergenic
CTGCAATGACCTGTGAAAGA+GGG 0.628798 3_1:-30215229 None:intergenic
TGGAAACTGGATATATGAGA+AGG 0.633434 3_1:+30216244 Msa0355590:CDS
ATTCTAGTAGAACAATTGGA+AGG 0.633447 3_1:+30215703 Msa0355590:CDS
TCCAACAAATTGGATTTGCG+CGG 0.637195 3_1:-30214879 None:intergenic
GAAGCATGCACATACTTGAA+GGG 0.648852 3_1:+30214900 Msa0355590:exon
TACGATTCAGAAACATATAG+GGG 0.649546 3_1:+30216203 Msa0355590:CDS
GTGGCGTGAGGAGTTGATTG+AGG 0.650121 3_1:+30217705 Msa0355590:CDS
TGAAGAAGCAGCAAAGAAGG+AGG 0.658434 3_1:+30217762 Msa0355590:CDS
CAGAGGCCAGAGAAGCCCTG+TGG 0.664634 3_1:+30217686 Msa0355590:CDS
GCATGCACATACTTGAAGGG+TGG 0.681802 3_1:+30214903 Msa0355590:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATATAAACTGAAAA+TGG - chr3_1:30215587-30215606 None:intergenic 10.0%
!!! ATTTTCAGTTTATATTTTAA+TGG + chr3_1:30215586-30215605 Msa0355590:intron 10.0%
!!! TTTTAAATTTGATTGTTTAT+TGG + chr3_1:30215983-30216002 Msa0355590:intron 10.0%
!!! CAAGTTTTTTTTTTTTTTTT+AGG - chr3_1:30217028-30217047 None:intergenic 10.0%
!! ATGAATATATGAATTGAAAA+CGG - chr3_1:30215050-30215069 None:intergenic 15.0%
!!! ACAAATTTTTGCTTATATTT+TGG + chr3_1:30215897-30215916 Msa0355590:intron 15.0%
!!! CAAATTTTTGCTTATATTTT+GGG + chr3_1:30215898-30215917 Msa0355590:intron 15.0%
!!! AATAATACATTTTTGACAAA+GGG - chr3_1:30215944-30215963 None:intergenic 15.0%
!!! AAATAATACATTTTTGACAA+AGG - chr3_1:30215945-30215964 None:intergenic 15.0%
!!! TTTGTTATATGATTTTATGT+TGG + chr3_1:30216126-30216145 Msa0355590:intron 15.0%
!!! GATATTTTTTTCATTGATTT+AGG - chr3_1:30216853-30216872 None:intergenic 15.0%
!!! AAAATATTGAGTTTAGAATT+TGG - chr3_1:30217231-30217250 None:intergenic 15.0%
!!! GTTTTTTTTTAAAAGCAAAT+TGG + chr3_1:30217463-30217482 Msa0355590:intron 15.0%
!!! ATTTAAAATGCAAAATATCA+TGG - chr3_1:30217625-30217644 None:intergenic 15.0%
!!! TTAAATTGTAGCTATTTTTA+TGG + chr3_1:30217639-30217658 Msa0355590:intron 15.0%
!! TATGTATATACATAATAATG+AGG - chr3_1:30217854-30217873 None:intergenic 15.0%
!!! CTAATCTTGTAATTTTTTTA+AGG + chr3_1:30218026-30218045 Msa0355590:three_prime_UTR 15.0%
!! AAAATGGAATGAAAATGATA+AGG - chr3_1:30215119-30215138 None:intergenic 20.0%
!!! TTATCAATCTTTAATTTCCA+TGG + chr3_1:30215378-30215397 Msa0355590:intron 20.0%
!! TAATTTCCATGGATAATTAT+CGG + chr3_1:30215389-30215408 Msa0355590:intron 20.0%
!! TCTCTTTGTATTTGTAAATA+AGG + chr3_1:30215609-30215628 Msa0355590:intron 20.0%
!! TGAACAAAAGTTAATGTATT+TGG - chr3_1:30215878-30215897 None:intergenic 20.0%
!! TAACATGTTTAACATGATTT+AGG + chr3_1:30216172-30216191 Msa0355590:intron 20.0%
!!! TAGATACTATACTTTGAAAA+GGG + chr3_1:30216429-30216448 Msa0355590:intron 20.0%
!! AAAAAAATATCGACATCATT+TGG + chr3_1:30216862-30216881 Msa0355590:intron 20.0%
!!! AAAAACACGATATATTTTTG+AGG + chr3_1:30216980-30216999 Msa0355590:intron 20.0%
!!! TTTTTTTTGTTACAACTTAG+AGG - chr3_1:30217100-30217119 None:intergenic 20.0%
!! TATACATCAAATATTAGAAG+AGG + chr3_1:30217385-30217404 Msa0355590:intron 20.0%
!!! TTTTCTTAAAATAAATGGAC+AGG - chr3_1:30217537-30217556 None:intergenic 20.0%
!!! AAGGCTTTTCTTAAAATAAA+TGG - chr3_1:30217542-30217561 None:intergenic 20.0%
!!! GGAATTTAAACATGTATTTT+AGG - chr3_1:30217568-30217587 None:intergenic 20.0%
!! AATGTACTGTTATTAAACTA+CGG + chr3_1:30217906-30217925 Msa0355590:three_prime_UTR 20.0%
! TTATGGTCCTTATGATATAT+GGG - chr3_1:30214962-30214981 None:intergenic 25.0%
! ATTATGGTCCTTATGATATA+TGG - chr3_1:30214963-30214982 None:intergenic 25.0%
! GTAAAAAGGAGTTGAAATTA+TGG - chr3_1:30214979-30214998 None:intergenic 25.0%
! AACAAAACGATTTACAAGAT+TGG + chr3_1:30215084-30215103 Msa0355590:CDS 25.0%
! GTGAATCAAAAGAGATAAAA+TGG - chr3_1:30215135-30215154 None:intergenic 25.0%
! AATTTCCATGGATAATTATC+GGG + chr3_1:30215390-30215409 Msa0355590:intron 25.0%
! ACTAGAAGAAGTTTAAATGT+CGG + chr3_1:30215446-30215465 Msa0355590:intron 25.0%
!!! AGTTTTCTGCTAGTTTTTAT+AGG + chr3_1:30215551-30215570 Msa0355590:intron 25.0%
!! TTTGTAAATAAGGTGTTAGA+TGG + chr3_1:30215619-30215638 Msa0355590:intron 25.0%
! TTATAACCGAGAAAACAATT+TGG + chr3_1:30215737-30215756 Msa0355590:CDS 25.0%
!!! CTCATTTTTGCTTACATTTT+GGG - chr3_1:30215821-30215840 None:intergenic 25.0%
!!! ACTCATTTTTGCTTACATTT+TGG - chr3_1:30215822-30215841 None:intergenic 25.0%
!!! TTTTTGCTTATATTTTGGGA+CGG + chr3_1:30215902-30215921 Msa0355590:intron 25.0%
!! ATGTTTCTGAATCGTAATAT+GGG - chr3_1:30216199-30216218 None:intergenic 25.0%
!! TATGTTTCTGAATCGTAATA+TGG - chr3_1:30216200-30216219 None:intergenic 25.0%
! ATTACGATTCAGAAACATAT+AGG + chr3_1:30216201-30216220 Msa0355590:CDS 25.0%
! TTACGATTCAGAAACATATA+GGG + chr3_1:30216202-30216221 Msa0355590:CDS 25.0%
! CTTACTTTAGTATATCTACA+AGG - chr3_1:30216342-30216361 None:intergenic 25.0%
! TGTAGATATACTAAAGTAAG+AGG + chr3_1:30216342-30216361 Msa0355590:intron 25.0%
!! GTAGATACTATACTTTGAAA+AGG + chr3_1:30216428-30216447 Msa0355590:intron 25.0%
!!! ATACTTTGAAAAGGGATTTT+AGG + chr3_1:30216437-30216456 Msa0355590:intron 25.0%
!!! AAAAGGGATTTTAGGTAAAA+TGG + chr3_1:30216445-30216464 Msa0355590:intron 25.0%
! CACATGTTAAAATACCAAAA+GGG - chr3_1:30216709-30216728 None:intergenic 25.0%
! TCACATGTTAAAATACCAAA+AGG - chr3_1:30216710-30216729 None:intergenic 25.0%
! TGATGTATAAGATAATCGTT+AGG - chr3_1:30217374-30217393 None:intergenic 25.0%
! ATATGATATAGAAGAGAGTT+TGG - chr3_1:30217411-30217430 None:intergenic 25.0%
! AACTCTCTTCTATATCATAT+AGG + chr3_1:30217411-30217430 Msa0355590:intron 25.0%
!!! AAACATGTATTTTAGGAAGA+AGG - chr3_1:30217561-30217580 None:intergenic 25.0%
! AAATAGAACAAAAAGTTGGA+GGG + chr3_1:30217728-30217747 Msa0355590:CDS 25.0%
!! CAAAAAGTGCTCAAGTAAAA+AGG - chr3_1:30214993-30215012 None:intergenic 30.0%
! CAGTTGGATTGAATTTTCAA+AGG + chr3_1:30215423-30215442 Msa0355590:intron 30.0%
AGTTGTTACTACTTTCTCTA+AGG - chr3_1:30215480-30215499 None:intergenic 30.0%
ATTCTAGTAGAACAATTGGA+AGG + chr3_1:30215703-30215722 Msa0355590:CDS 30.0%
! AAGATGCCAAATTGTTTTCT+CGG - chr3_1:30215746-30215765 None:intergenic 30.0%
!! AGTCAACATAAGTTGATGTA+TGG + chr3_1:30215839-30215858 Msa0355590:intron 30.0%
GTACATAATGTTCACTGTTT+GGG + chr3_1:30216033-30216052 Msa0355590:CDS 30.0%
TACATAATGTTCACTGTTTG+GGG + chr3_1:30216034-30216053 Msa0355590:CDS 30.0%
TACGATTCAGAAACATATAG+GGG + chr3_1:30216203-30216222 Msa0355590:CDS 30.0%
!!! CGTTGTTAGCATTTTTTCTA+AGG + chr3_1:30216530-30216549 Msa0355590:intron 30.0%
! AATTGAGTAAACAACCCTTT+TGG + chr3_1:30216692-30216711 Msa0355590:intron 30.0%
! TCATGTTAACATGTGTTTTG+AGG + chr3_1:30216785-30216804 Msa0355590:intron 30.0%
GGATACATGATAGATGATAA+AGG + chr3_1:30216806-30216825 Msa0355590:intron 30.0%
AAAGGCAACAACACTTTAAT+CGG + chr3_1:30216824-30216843 Msa0355590:intron 30.0%
AAATATCGACATCATTTGGT+CGG + chr3_1:30216866-30216885 Msa0355590:intron 30.0%
! TTTTGTTACAACTTAGAGGT+TGG - chr3_1:30217096-30217115 None:intergenic 30.0%
!! ATGAGTTGATCATGTGAATT+TGG - chr3_1:30217179-30217198 None:intergenic 30.0%
AATGACAGAAAATAGAAGTG+TGG - chr3_1:30217589-30217608 None:intergenic 30.0%
AATGCAAAATATCATGGATG+TGG - chr3_1:30217619-30217638 None:intergenic 30.0%
GAGGAAATAGAACAAAAAGT+TGG + chr3_1:30217724-30217743 Msa0355590:CDS 30.0%
GAAATAGAACAAAAAGTTGG+AGG + chr3_1:30217727-30217746 Msa0355590:CDS 30.0%
! CATAATAATGAGGTATCACT+TGG - chr3_1:30217844-30217863 None:intergenic 30.0%
CACAATATAAATCAATGAGC+AGG + chr3_1:30217951-30217970 Msa0355590:three_prime_UTR 30.0%
ATCCCATCCCATATATCATA+AGG + chr3_1:30214952-30214971 Msa0355590:CDS 35.0%
GTCCTTATGATATATGGGAT+GGG - chr3_1:30214957-30214976 None:intergenic 35.0%
!! GCACTTTTTGTTCAAAACCA+TGG + chr3_1:30215003-30215022 Msa0355590:CDS 35.0%
!!! TGTTCTATTTTTTGCAGCCT+AGG + chr3_1:30215190-30215209 Msa0355590:intron 35.0%
TTTACCAGATATTCCACTGA+TGG + chr3_1:30215678-30215697 Msa0355590:CDS 35.0%
GGCAATTCTAGTAGAACAAT+TGG + chr3_1:30215699-30215718 Msa0355590:CDS 35.0%
GGTACATAATGTTCACTGTT+TGG + chr3_1:30216032-30216051 Msa0355590:CDS 35.0%
! CTTATTCTTTGGTTCCATGA+AGG + chr3_1:30216060-30216079 Msa0355590:CDS 35.0%
!!! CGAAAAGTGTTTTACCTTCA+TGG - chr3_1:30216077-30216096 None:intergenic 35.0%
TGGAAACTGGATATATGAGA+AGG + chr3_1:30216244-30216263 Msa0355590:CDS 35.0%
AATACTAGAAGCCACAAACA+AGG + chr3_1:30216302-30216321 Msa0355590:intron 35.0%
ATACTAGAAGCCACAAACAA+GGG + chr3_1:30216303-30216322 Msa0355590:intron 35.0%
!! AGTAAGAGGAGTGTTATGAA+CGG + chr3_1:30216356-30216375 Msa0355590:intron 35.0%
TGCTACATGAAACATTCATG+TGG - chr3_1:30216476-30216495 None:intergenic 35.0%
GAGGAACTTGTAGGTTATAT+GGG - chr3_1:30216608-30216627 None:intergenic 35.0%
TGAGGAACTTGTAGGTTATA+TGG - chr3_1:30216609-30216628 None:intergenic 35.0%
!!! GCATTGATTTTTTCCAGATG+AGG - chr3_1:30216627-30216646 None:intergenic 35.0%
!!! GAACCCAGATTTTTTCACTT+GGG + chr3_1:30216905-30216924 Msa0355590:intron 35.0%
ACACCCAAGTGAAAAAATCT+GGG - chr3_1:30216911-30216930 None:intergenic 35.0%
!! ACTTAGAGGTTGGTAAACAT+AGG - chr3_1:30217086-30217105 None:intergenic 35.0%
GAATTCAATCATCAGCTAAC+GGG - chr3_1:30217134-30217153 None:intergenic 35.0%
CGAATTCAATCATCAGCTAA+CGG - chr3_1:30217135-30217154 None:intergenic 35.0%
!!! GGAGTTTTATTGTGTGCAAT+CGG - chr3_1:30217353-30217372 None:intergenic 35.0%
! TTTTATGGTTATGCAGCAAG+AGG + chr3_1:30217654-30217673 Msa0355590:intron 35.0%
!! TGGTCAATTGATGGACTAAA+AGG - chr3_1:30217824-30217843 None:intergenic 35.0%
TGTGCATGCTTCCAACAAAT+TGG - chr3_1:30214892-30214911 None:intergenic 40.0%
GAAGCATGCACATACTTGAA+GGG + chr3_1:30214900-30214919 Msa0355590:exon 40.0%
ATATATGGGATGGGATAGAG+TGG - chr3_1:30214948-30214967 None:intergenic 40.0%
GGTCCTTATGATATATGGGA+TGG - chr3_1:30214958-30214977 None:intergenic 40.0%
GGTGAAACCAATGATAGCTT+CGG - chr3_1:30215029-30215048 None:intergenic 40.0%
GAAAGAGGGTAGAGTTTGAA+GGG - chr3_1:30215218-30215237 None:intergenic 40.0%
TGAAAGAGGGTAGAGTTTGA+AGG - chr3_1:30215219-30215238 None:intergenic 40.0%
TCCATGGATAATTATCGGGT+TGG + chr3_1:30215394-30215413 Msa0355590:intron 40.0%
TCCAACCCGATAATTATCCA+TGG - chr3_1:30215398-30215417 None:intergenic 40.0%
GCATCTATGTGCAAAGTGAA+TGG + chr3_1:30215655-30215674 Msa0355590:CDS 40.0%
ATTGCCATCAGTGGAATATC+TGG - chr3_1:30215685-30215704 None:intergenic 40.0%
TCTACTAGAATTGCCATCAG+TGG - chr3_1:30215694-30215713 None:intergenic 40.0%
AGCGTCTGCAAAGGATTAAA+GGG - chr3_1:30216011-30216030 None:intergenic 40.0%
AAGCGTCTGCAAAGGATTAA+AGG - chr3_1:30216012-30216031 None:intergenic 40.0%
TTTAATCCTTTGCAGACGCT+TGG + chr3_1:30216011-30216030 Msa0355590:intron 40.0%
!! GTTTGGGGAGTCTTATTCTT+TGG + chr3_1:30216049-30216068 Msa0355590:CDS 40.0%
TCAGAAACATATAGGGGAGA+TGG + chr3_1:30216209-30216228 Msa0355590:CDS 40.0%
ACTTTAGTAGCCCAATAGCA+TGG + chr3_1:30216565-30216584 Msa0355590:intron 40.0%
TAACCTACAAGTTCCTCATC+TGG + chr3_1:30216611-30216630 Msa0355590:intron 40.0%
TTTCCAGATGAGGAACTTGT+AGG - chr3_1:30216617-30216636 None:intergenic 40.0%
!!! CGAACCCAGATTTTTTCACT+TGG + chr3_1:30216904-30216923 Msa0355590:intron 40.0%
CACACCCAAGTGAAAAAATC+TGG - chr3_1:30216912-30216931 None:intergenic 40.0%
ACTTGAAGAAGCAGCAAAGA+AGG + chr3_1:30217759-30217778 Msa0355590:CDS 40.0%
GGTATCACTTGGTCAATTGA+TGG - chr3_1:30217833-30217852 None:intergenic 40.0%
! GGAAGCATGCACATACTTGA+AGG + chr3_1:30214899-30214918 Msa0355590:exon 45.0%
CAAACTCTACCCTCTTTCAC+AGG + chr3_1:30215220-30215239 Msa0355590:CDS 45.0%
CTGCAATGACCTGTGAAAGA+GGG - chr3_1:30215232-30215251 None:intergenic 45.0%
TATGTACCAAGCGTCTGCAA+AGG - chr3_1:30216020-30216039 None:intergenic 45.0%
GAAACATATAGGGGAGATGG+AGG + chr3_1:30216212-30216231 Msa0355590:CDS 45.0%
! GATTTGTGCTCCCTTGTTTG+TGG - chr3_1:30216316-30216335 None:intergenic 45.0%
GGTTATGCAGCAAGAGGTTA+TGG + chr3_1:30217660-30217679 Msa0355590:intron 45.0%
TGAAGAAGCAGCAAAGAAGG+AGG + chr3_1:30217762-30217781 Msa0355590:CDS 45.0%
!!! AAGTTTTTTTTTTTTTTTTA+GGG - chr3_1:30217027-30217046 None:intergenic 5.0%
GCATGCACATACTTGAAGGG+TGG + chr3_1:30214903-30214922 Msa0355590:exon 50.0%
ACCATGGCCGAAGCTATCAT+TGG + chr3_1:30215019-30215038 Msa0355590:CDS 50.0%
ACCAATGATAGCTTCGGCCA+TGG - chr3_1:30215023-30215042 None:intergenic 50.0%
!! GTAGAGTTTGAAGGGTGCCT+AGG - chr3_1:30215210-30215229 None:intergenic 50.0%
CCTGCAATGACCTGTGAAAG+AGG - chr3_1:30215233-30215252 None:intergenic 50.0%
CCTCTTTCACAGGTCATTGC+AGG + chr3_1:30215230-30215249 Msa0355590:CDS 50.0%
TATAGGGGAGATGGAGGAGA+TGG + chr3_1:30216218-30216237 Msa0355590:CDS 50.0%
GTTCGTTGGGCCATGCTATT+GGG - chr3_1:30216578-30216597 None:intergenic 50.0%
TGTAGGTTATATGGGCGCAC+AGG - chr3_1:30216600-30216619 None:intergenic 50.0%
TCGGTGGTTGTTGGACTATC+AGG - chr3_1:30217298-30217317 None:intergenic 50.0%
GTTGGTACATCGGTGGTTGT+TGG - chr3_1:30217307-30217326 None:intergenic 50.0%
GCAAGAGGTTATGGAAGCAG+AGG + chr3_1:30217669-30217688 Msa0355590:intron 50.0%
AATCAACTCCTCACGCCACA+GGG - chr3_1:30217704-30217723 None:intergenic 50.0%
AGAAGCAGCAAAGAAGGAGG+AGG + chr3_1:30217765-30217784 Msa0355590:CDS 50.0%
!! ATCGGGTTGGATAGCGCAGT+TGG + chr3_1:30215407-30215426 Msa0355590:intron 55.0%
! GAGGAGATGGCACTGGAAAC+TGG + chr3_1:30216231-30216250 Msa0355590:CDS 55.0%
GGTTCGTTGGGCCATGCTAT+TGG - chr3_1:30216579-30216598 None:intergenic 55.0%
TATGGGCGCACAGGTTCGTT+GGG - chr3_1:30216591-30216610 None:intergenic 55.0%
ATATGGGCGCACAGGTTCGT+TGG - chr3_1:30216592-30216611 None:intergenic 55.0%
ACCACCGATGTACCAACTGC+AGG + chr3_1:30217310-30217329 Msa0355590:intron 55.0%
! CTCGCCTGCAGTTGGTACAT+CGG - chr3_1:30217317-30217336 None:intergenic 55.0%
GACAATCTCTCGCCTGCAGT+TGG - chr3_1:30217325-30217344 None:intergenic 55.0%
CAATCAACTCCTCACGCCAC+AGG - chr3_1:30217705-30217724 None:intergenic 55.0%
! GTGGCGTGAGGAGTTGATTG+AGG + chr3_1:30217705-30217724 Msa0355590:CDS 55.0%
GGAGATGGAGGAGATGGCAC+TGG + chr3_1:30216224-30216243 Msa0355590:CDS 60.0%
! GCCTGCAGTTGGTACATCGG+TGG - chr3_1:30217314-30217333 None:intergenic 60.0%
CAGAGGCCAGAGAAGCCCTG+TGG + chr3_1:30217686-30217705 Msa0355590:CDS 65.0%
CTCACGCCACAGGGCTTCTC+TGG - chr3_1:30217695-30217714 None:intergenic 65.0%
CAGAGAAGCCCTGTGGCGTG+AGG + chr3_1:30217693-30217712 Msa0355590:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 30214882 30218054 30214882 ID=Msa0355590;Name=Msa0355590
chr3_1 mRNA 30214882 30218054 30214882 ID=Msa0355590-mRNA-1;Parent=Msa0355590;Name=Msa0355590-mRNA-1;_AED=0.04;_eAED=0.04;_QI=23|1|1|1|1|1|6|253|221
chr3_1 exon 30214882 30215105 30214882 ID=Msa0355590-mRNA-1:exon:6254;Parent=Msa0355590-mRNA-1
chr3_1 exon 30215207 30215251 30215207 ID=Msa0355590-mRNA-1:exon:6255;Parent=Msa0355590-mRNA-1
chr3_1 exon 30215631 30215790 30215631 ID=Msa0355590-mRNA-1:exon:6256;Parent=Msa0355590-mRNA-1
chr3_1 exon 30216026 30216081 30216026 ID=Msa0355590-mRNA-1:exon:6257;Parent=Msa0355590-mRNA-1
chr3_1 exon 30216194 30216265 30216194 ID=Msa0355590-mRNA-1:exon:6258;Parent=Msa0355590-mRNA-1
chr3_1 exon 30217670 30218054 30217670 ID=Msa0355590-mRNA-1:exon:6259;Parent=Msa0355590-mRNA-1
chr3_1 five_prime_UTR 30214882 30214904 30214882 ID=Msa0355590-mRNA-1:five_prime_utr;Parent=Msa0355590-mRNA-1
chr3_1 CDS 30214905 30215105 30214905 ID=Msa0355590-mRNA-1:cds;Parent=Msa0355590-mRNA-1
chr3_1 CDS 30215207 30215251 30215207 ID=Msa0355590-mRNA-1:cds;Parent=Msa0355590-mRNA-1
chr3_1 CDS 30215631 30215790 30215631 ID=Msa0355590-mRNA-1:cds;Parent=Msa0355590-mRNA-1
chr3_1 CDS 30216026 30216081 30216026 ID=Msa0355590-mRNA-1:cds;Parent=Msa0355590-mRNA-1
chr3_1 CDS 30216194 30216265 30216194 ID=Msa0355590-mRNA-1:cds;Parent=Msa0355590-mRNA-1
chr3_1 CDS 30217670 30217801 30217670 ID=Msa0355590-mRNA-1:cds;Parent=Msa0355590-mRNA-1
chr3_1 three_prime_UTR 30217802 30218054 30217802 ID=Msa0355590-mRNA-1:three_prime_utr;Parent=Msa0355590-mRNA-1
Gene Sequence

>Msa0355590

ATGCACATACTTGAAGGGTGGTTCTTCATTCTACTCTTATCCACTCTATCCCATCCCATATATCATAAGGACCATAATTTCAACTCCTTTTTACTTGAGCACTTTTTGTTCAAAACCATGGCCGAAGCTATCATTGGTTTCACCGTTTTCAATTCATATATTCATAGCTCATGTCTTCAAACAAAACGATTTACAAGATTGCCTAGGCACCCTTCAAACTCTACCCTCTTTCACAGGTCATTGCAGGTGTTAGATGGAAAAATAAAAAGAGCATCTATGTGCAAAGTGAATGGTTTACCAGATATTCCACTGATGGCAATTCTAGTAGAACAATTGGAAGGTCAAAGAGATCTTATAACCGAGAAAACAATTTGGCATCTTAGTGATCAGCAAATAAAGAATGTTTACGCTTGGTACATAATGTTCACTGTTTGGGGAGTCTTATTCTTTGGTTCCATGAAGGACCCATATTACGATTCAGAAACATATAGGGGAGATGGAGGAGATGGCACTGGAAACTGGATATATGAGAAGCAAGAGGTTATGGAAGCAGAGGCCAGAGAAGCCCTGTGGCGTGAGGAGTTGATTGAGGAAATAGAACAAAAAGTTGGAGGGTTGAGAGAACTTGAAGAAGCAGCAAAGAAGGAGGAGGAACTTGTTAAATGA

Protein sequence

>Msa0355590

MHILEGWFFILLLSTLSHPIYHKDHNFNSFLLEHFLFKTMAEAIIGFTVFNSYIHSSCLQTKRFTRLPRHPSNSTLFHRSLQVLDGKIKRASMCKVNGLPDIPLMAILVEQLEGQRDLITEKTIWHLSDQQIKNVYAWYIMFTVWGVLFFGSMKDPYYDSETYRGDGGDGTGNWIYEKQEVMEAEAREALWREELIEEIEQKVGGLRELEEAAKKEEELVK*