AlfalfaGEDB | Msa0562580

M. sativa cultivar zhongmu-4 / Msa0562580

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562580	XP_039684319.1	95.921	662	22	3	1	658	1	661	0.0	1318

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562580	sp\|P0C5E2\|LRL12_ARATH	45.954	655	311	19	6	635	13	649	8.32e-179	526

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562580	A0A396GQA8	95.921	662	22	3	1	658	1	661	0.0	1318

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0562580	-0.812112	4.993620e-51	-8.615850e-47
Msa0000800	Msa0562580	0.832944	7.079286e-56	-8.615850e-47
Msa0002110	Msa0562580	-0.825567	4.369713e-54	-8.615850e-47
Msa0002690	Msa0562580	-0.802452	5.572632e-49	-8.615850e-47
Msa0002700	Msa0562580	-0.804838	1.782273e-49	-8.615850e-47
Msa0004180	Msa0562580	-0.850244	1.924515e-60	-8.615850e-47
Msa0005500	Msa0562580	-0.801188	1.013118e-48	-8.615850e-47
Msa0007810	Msa0562580	-0.809916	1.493627e-50	-8.615850e-47
Msa0011060	Msa0562580	-0.829450	5.113436e-55	-8.615850e-47
Msa0011100	Msa0562580	-0.823358	1.446128e-53	-8.615850e-47

Showing 1 to 10 of 810 entries

Previous1 2 3 4 5…81Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562580	MtrunA17_Chr8g0376061	95.921	662	22	3	1	658	1	661	0.0	1318
Msa0562580	MtrunA17_Chr6g0483931	54.026	683	259	18	6	647	16	684	0.0	629
Msa0562580	MtrunA17_Chr6g0467631	50.803	685	283	19	3	652	5	670	0.0	579
Msa0562580	MtrunA17_Chr7g0251121	43.888	679	325	14	5	643	16	678	3.51e-180	528
Msa0562580	MtrunA17_Chr6g0467601	59.267	464	169	9	195	644	9	466	4.05e-177	512
Msa0562580	MtrunA17_Chr1g0209361	46.923	650	302	18	18	648	32	657	2.38e-169	500
Msa0562580	MtrunA17_Chr1g0209391	55.528	398	145	6	214	610	211	577	1.39e-147	442
Msa0562580	MtrunA17_Chr5g0423061	58.967	368	142	5	246	610	229	590	2.36e-141	426
Msa0562580	MtrunA17_Chr1g0209431	62.426	338	127	0	271	608	276	613	7.97e-141	426
Msa0562580	MtrunA17_Chr1g0209381	66.456	316	106	0	295	610	290	605	4.04e-138	419

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562580	AT1G18390.1	47.611	628	295	15	14	624	18	628	0.0	531
Msa0562580	AT1G18390.2	45.482	664	304	19	6	635	13	652	3.87e-178	521
Msa0562580	AT5G38210.1	42.222	675	337	16	5	644	16	672	4.60e-168	497
Msa0562580	AT1G66880.3	44.018	652	307	15	30	644	33	663	3.20e-167	494
Msa0562580	AT5G38210.2	41.837	686	336	19	5	644	16	684	3.92e-165	490
Msa0562580	AT5G38210.3	42.348	673	327	18	16	644	11	666	3.03e-164	487
Msa0562580	AT1G66880.2	43.134	670	310	17	30	644	252	905	7.32e-157	476
Msa0562580	AT1G66880.2	27.111	225	140	9	30	249	33	238	1.30e-12	71.6
Msa0562580	AT1G66880.1	43.134	670	310	17	30	644	631	1284	1.48e-152	474
Msa0562580	AT1G66880.1	29.798	198	118	7	36	228	26	207	9.40e-14	75.5

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Find 118 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGTGTCACTATAT+GGG	0.447921	4_1:-62566410	Msa0562580:CDS
AAATTTGAATCAGGCGACGA+TGG	0.611170	4_1:+62565658	None:intergenic
AACACTTCAGGACGGGCGTC+TGG	0.438058	4_1:-62566520	Msa0562580:CDS
AAGAACAATGATCATAAACA+AGG	0.681227	4_1:+62568102	None:intergenic
AAGAAGAACAAGAACAATAT+AGG	0.324613	4_1:+62568392	None:intergenic
AAGCTAGGTAGTGGAATTGA+AGG	0.501826	4_1:-62567843	Msa0562580:CDS
AAGCTTGCTAAATTTGAATC+AGG	0.356206	4_1:+62565649	None:intergenic
AAGGAAAATGATAAATGCAG+TGG	0.648987	4_1:-62565851	Msa0562580:CDS
AATGATATCAAGTTTCCAAA+TGG	0.512511	4_1:-62567993	Msa0562580:CDS
ACAAGGGACTCCTGGTTACG+TGG	0.578272	4_1:-62566091	Msa0562580:CDS

Showing 1 to 10 of 118 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAAACAAACCAAGTTATTG+TGG	-	chr4_1:62565762-62565781	Msa0562580:CDS	30.0%
GATGATGAGAATCACATTTA+AGG	+	chr4_1:62565806-62565825	None:intergenic	30.0%
CAAAACACAACCATTCAAAT+TGG	-	chr4_1:62565825-62565844	Msa0562580:CDS	30.0%
ATTCTGTGAACCAATTTGAA+TGG	+	chr4_1:62565838-62565857	None:intergenic	30.0%
ATTGATCAATACGTAAGACA+TGG	+	chr4_1:62565863-62565882	None:intergenic	30.0%
AGAAAGTTTATGCCAAATCA+AGG	+	chr4_1:62566778-62566797	None:intergenic	30.0%
AGTAGAATCAAAGTAGTTTG+TGG	+	chr4_1:62567212-62567231	None:intergenic	30.0%
ATTGTCAAGTAGAATGTTGT+TGG	+	chr4_1:62567828-62567847	None:intergenic	30.0%
TGATAGTACAAATGGTATTC+CGG	+	chr4_1:62567953-62567972	None:intergenic	30.0%
TTGAATCAGATTTCAAAGCA+AGG	-	chr4_1:62568146-62568165	Msa0562580:CDS	30.0%

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	62565615	62568423	62565615	ID=Msa0562580;Name=Msa0562580
chr4_1	mRNA	62565615	62568423	62565615	ID=Msa0562580-mRNA-1;Parent=Msa0562580;Name=Msa0562580-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0\|0.66\|0.25\|1\|1\|1\|4\|0\|658
chr4_1	exon	62567676	62568423	62567676	ID=Msa0562580-mRNA-1:exon:19778;Parent=Msa0562580-mRNA-1
chr4_1	exon	62567150	62567185	62567150	ID=Msa0562580-mRNA-1:exon:19777;Parent=Msa0562580-mRNA-1
chr4_1	exon	62566767	62567030	62566767	ID=Msa0562580-mRNA-1:exon:19776;Parent=Msa0562580-mRNA-1
chr4_1	exon	62565615	62566543	62565615	ID=Msa0562580-mRNA-1:exon:19775;Parent=Msa0562580-mRNA-1
chr4_1	CDS	62567676	62568423	62567676	ID=Msa0562580-mRNA-1:cds;Parent=Msa0562580-mRNA-1
chr4_1	CDS	62567150	62567185	62567150	ID=Msa0562580-mRNA-1:cds;Parent=Msa0562580-mRNA-1
chr4_1	CDS	62566767	62567030	62566767	ID=Msa0562580-mRNA-1:cds;Parent=Msa0562580-mRNA-1
chr4_1	CDS	62565615	62566543	62565615	ID=Msa0562580-mRNA-1:cds;Parent=Msa0562580-mRNA-1

Gene Sequence

>Msa0562580

ATGGCTTTCCCTATATTGTTCTTGTTCTTCTTGGTTACTTTGCCAACAACAATTTGCCAACAACATCAACATAACAAATATGATGAATGTATCAAACCATACACATGTGGTGAAGAAGTATCCGGCATATACTATCCATTTTGGGGACAAAACAAACCAAGTTATTGTGGTAGCAACAATGAATTCAACCTTAAATGTGATTCTCATCATCAAAACACAACCATTCAAATTGGTTCACAGAATTTCCATGTCTTACGTATTGATCAATTGGGTTACACCATGTCAATGTTTCGAAAAGGCCTTGTTTATGATCATTGTTCTTCTAGTTTAACCAACACTTCTTTAAACTTGAGTCATTTTCATTACATGCCTAATGTGAGGAACATCACTATCTTATATAACTGTCCTAATGATATCAAGTTTCCAAATGGCGTGAATGTGAGCTCATTTTCGTGCAAGGAAGATGAGAGCAAGCGTGCATTATATATGGATTCTGCAACTGCAGAGAGTATAAATTGTGAAGGAGTTCGTATTGAAGTTCAGGTAACACAGAAAGCGAAGCTAGGTAGTGGAATTGAAGGGTTGAACAAAGCTTTGAATGGTGGATTTGATGTGAGATATGTGTTTGATACTCAAGCATGCTTAAAATGCATTTTAAGTAATGGAACTTGTGGGGGAAATGATAAGAATAGATTTTCATGTTATTGTCCTGATGGAACTGAAGGTTTAGATTGTTCACATCTCCACGATAATCGATGGAATTCGAAAACAAAGGTTGCTGTAGGAGTTTCTGTTGTTGTGTTCAGTGCAATTGCAGTAGGCACTGGCTTCTTCATCTATTATTATTGCAGAAAGAAGAAAAAGAATGTTCATGTAGTTTCATCTGCACGATCTCGGAGTGTATCTGGTTATAGTTCAGAAGATACTGAGAGGGGAAGTAGATACCGTGGAGTACACTTCTTCACCTATAGTGAACTTGAAAAGGCCACAAACTACTTTGATTCTACTAGAGCACTAGGAGATGGAGGCTTTGGCACAGTATATTTTGGAACACTTCAGGACGGGCGTCTGGTTGCGGTGAAACGCATGAATGAAAACAACTACAGGAGAGTTGAGCAATTTGTGAATGAAGTTGAGATTTTAACAGGACTACACCATCAAAATCTTGTGTCACTATATGGGTGCACTTCGCGCCATAGTCAAGAACTACTGCTTGTATATGAATATGTTCCTAATGGAACTGTTGCCGATCACCTTCATGGTAAAAAAGCAAAACCTGGCATGCTACCTTGGCATATCAGAATGAACATTGCAATAGAAACTGCTAGTGCATTAGTTTATCTTCATGCCTCTGACATCATCCATAGAGATGTGAAAACCAACAACATTCTACTTGACAATCATTTTAGTGTCAAAGTAGCAGATTTTGGACTTTCGCGTTTATTTCCAATCCATGTCACGCACATTTCAACTGCCCCACAAGGGACTCCTGGTTACGTGGATCCGGAATACCATTTGTACTATCAGCTTACCGATAAAAGCGATGTTTTTAGCTTCGGAGTTGTGTTGATTGAGCTAATATCGTCAATGCCTGCTGTTGATATCACAAGGCATAGACAAGAAATCAATTTGTCTAACATGGCTATTAAGAAGATTCAAAATGGGACATTGCATGAGCTTGTTGACCCTACACTTGGCTTTGAATCAGATTTCAAAGCAAGGAAAATGATAAATGCAGTGGCAGAGTTAGCATTTCAGTGTTTGCAGAGTTCCAAAGATGTTAGACCTTCTATGGTAGAAGTGATGGAAAGGCTTAAGGATATTCAGAGTGATGGGAAATATAAATGTAAACCTGAGGTGTTGGATATCTCAGGAGATGATGATACCACTTTGATAAAAATTGATCCGCCACCATCGTCGCCTGATTCAAATTTAGCAAGCTTATCTATTCCGCCATATACTAATACCGATATATAA

Protein sequence

>Msa0562580

MAFPILFLFFLVTLPTTICQQHQHNKYDECIKPYTCGEEVSGIYYPFWGQNKPSYCGSNNEFNLKCDSHHQNTTIQIGSQNFHVLRIDQLGYTMSMFRKGLVYDHCSSSLTNTSLNLSHFHYMPNVRNITILYNCPNDIKFPNGVNVSSFSCKEDESKRALYMDSATAESINCEGVRIEVQVTQKAKLGSGIEGLNKALNGGFDVRYVFDTQACLKCILSNGTCGGNDKNRFSCYCPDGTEGLDCSHLHDNRWNSKTKVAVGVSVVVFSAIAVGTGFFIYYYCRKKKKNVHVVSSARSRSVSGYSSEDTERGSRYRGVHFFTYSELEKATNYFDSTRALGDGGFGTVYFGTLQDGRLVAVKRMNENNYRRVEQFVNEVEILTGLHHQNLVSLYGCTSRHSQELLLVYEYVPNGTVADHLHGKKAKPGMLPWHIRMNIAIETASALVYLHASDIIHRDVKTNNILLDNHFSVKVADFGLSRLFPIHVTHISTAPQGTPGYVDPEYHLYYQLTDKSDVFSFGVVLIELISSMPAVDITRHRQEINLSNMAIKKIQNGTLHELVDPTLGFESDFKARKMINAVAELAFQCLQSSKDVRPSMVEVMERLKDIQSDGKYKCKPEVLDISGDDDTTLIKIDPPPSSPDSNLASLSIPPYTNTDI*