AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0351930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351930 MtrunA17_Chr3g0086951 90.244 205 4 2 1 205 1 189 2.66e-124 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351930 AT5G08050.1 58.621 174 46 2 31 203 8 156 5.08e-49 157

Find 48 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTTGATTTCTCTCTTA+TGG 0.205748 3_1:-19493586 Msa0351930:three_prime_UTR
TGTTGTCGAGGTTGGTTTAC+AGG 0.237635 3_1:-19493692 Msa0351930:CDS
GTAGACGTTACAGCACTTCT+AGG 0.268219 3_1:+19493973 None:intergenic
GAGACAGAAGGAACTGGTTT+GGG 0.333662 3_1:+19495169 None:intergenic
CTAAAACTGTAGCTTCTAAA+AGG 0.350183 3_1:-19495147 Msa0351930:intron
TGTGTTGTTGGTGGTTCTGC+TGG 0.362863 3_1:-19493652 Msa0351930:CDS
AGAGACAGAAGGAACTGGTT+TGG 0.399810 3_1:+19495168 None:intergenic
CATTCTTGTGAGGAGTTTAA+CGG 0.401167 3_1:+19493945 None:intergenic
TAGCGATAATCCTGCTTTCT+CGG 0.404741 3_1:+19493870 None:intergenic
GTTGCTTTGATCTGTGTTGT+TGG 0.414772 3_1:-19493664 Msa0351930:CDS
ACCTCGACAACATTATCTTC+TGG 0.418827 3_1:+19493703 None:intergenic
TAAACCTGCTTTCTCTGCCT+TGG 0.422974 3_1:+19493903 None:intergenic
CGTTAAACTCCTCACAAGAA+TGG 0.466698 3_1:-19493944 Msa0351930:CDS
GCCATGGATTTGACCAGAAA+AGG 0.471154 3_1:+19495196 None:intergenic
AAGAGTGATCCTGGAGTTGA+TGG 0.471176 3_1:+19493778 None:intergenic
TCAAGTCACCGTTTCACCTA+TGG 0.478137 3_1:-19494164 Msa0351930:intron
GAAGATAATGTTGTCGAGGT+TGG 0.479127 3_1:-19493700 Msa0351930:CDS
CGAGGTTGGTTTACAGGCTG+TGG 0.483091 3_1:-19493686 Msa0351930:CDS
GATCAAGCTGTTACTACAGA+TGG 0.487910 3_1:+19495261 None:intergenic
CTTATTGTATTATGATGTGA+AGG 0.491912 3_1:-19493540 Msa0351930:three_prime_UTR
CTATCAACAATAGAGAAACT+TGG 0.493062 3_1:-19493850 Msa0351930:CDS
CTGAGTGTGAAGAGTGATCC+TGG 0.494258 3_1:+19493769 None:intergenic
GCAGAATAGAGACCATTGAT+TGG 0.496954 3_1:+19495422 None:intergenic
AACAATGGAAAACCAATCAA+TGG 0.503986 3_1:-19495434 Msa0351930:five_prime_UTR
AACTGGTTTGGGAGTAGCCA+TGG 0.510271 3_1:+19495180 None:intergenic
TTCTAGGTTGTTCCCCAAGT+GGG 0.513232 3_1:+19493989 None:intergenic
TTATCAGCCGCCGAGAAAGC+AGG 0.520670 3_1:-19493880 Msa0351930:CDS
TTAAACTACCATAGGTGAAA+CGG 0.526219 3_1:+19494156 None:intergenic
CTCTCAAAAGCTGAAGAACT+CGG 0.527504 3_1:-19493823 Msa0351930:CDS
GCTTTGATCTGTGTTGTTGG+TGG 0.528999 3_1:-19493661 Msa0351930:CDS
TATAATGATGATGACAATGA+AGG 0.531212 3_1:-19495293 Msa0351930:exon
CTTTAAAATAAAAGCAACAA+TGG 0.531423 3_1:-19495449 None:intergenic
AATTCAACTGTATTCCCACT+TGG 0.537612 3_1:-19494003 Msa0351930:CDS
TTAACCAAGGCAGAGAAAGC+AGG 0.541705 3_1:-19493907 Msa0351930:CDS
GCTACTGATCCATCAACTCC+AGG 0.551246 3_1:-19493787 Msa0351930:CDS
ATTCAACTGTATTCCCACTT+GGG 0.553323 3_1:-19494002 Msa0351930:CDS
TCAGTTGCTCCATTCTTGTG+AGG 0.565544 3_1:+19493935 None:intergenic
AGGTGAAACGGTGACTTGAT+TGG 0.579874 3_1:+19494168 None:intergenic
TCCAGAAGATAATGTTGTCG+AGG 0.595963 3_1:-19493704 Msa0351930:CDS
TTCAACTGTATTCCCACTTG+GGG 0.603934 3_1:-19494001 Msa0351930:CDS
TTATTGTATTATGATGTGAA+GGG 0.605343 3_1:-19493539 Msa0351930:three_prime_UTR
GGAACAAGATAAACAAACAA+AGG 0.614999 3_1:+19493724 None:intergenic
GATAGTGATAATTGATGATG+AGG 0.623606 3_1:+19495400 None:intergenic
TCATAATCAATGATAATGAG+TGG 0.625753 3_1:+19495378 None:intergenic
CTTCTAGGTTGTTCCCCAAG+TGG 0.631009 3_1:+19493988 None:intergenic
ATAATACAATAAGATAACAA+AGG 0.670551 3_1:+19493550 None:intergenic
CGATAATCCTGCTTTCTCGG+CGG 0.695629 3_1:+19493873 None:intergenic
GCAACTGAGACTGTTAACCA+AGG 0.730927 3_1:-19493920 Msa0351930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACAATAAGATAACAA+AGG + chr3_1:19495284-19495303 None:intergenic 15.0%
!!! ATGATTCAAAGTTTTATATA+TGG - chr3_1:19495353-19495372 Msa0351930:five_prime_UTR 15.0%
!! ATAATACAATAAGATAACAA+AGG + chr3_1:19495284-19495303 None:intergenic 15.0%
!!! ATGATTCAAAGTTTTATATA+TGG - chr3_1:19495353-19495372 Msa0351930:five_prime_UTR 15.0%
!! CAATAACAAGCAATAATATA+TGG + chr3_1:19493727-19493746 None:intergenic 20.0%
!! TTATGTAATATTATACTGTG+TGG - chr3_1:19493785-19493804 Msa0351930:CDS 20.0%
!! AAATTTAACAATATGTGAAC+AGG - chr3_1:19493899-19493918 Msa0351930:CDS 20.0%
!! TATTGAAAAAGTAAATAACC+AGG + chr3_1:19494223-19494242 None:intergenic 20.0%
!! AAAATTTCTATGTAGGTTAA+TGG + chr3_1:19494252-19494271 None:intergenic 20.0%
!! ACAAAGTAAAATTTCTATGT+AGG + chr3_1:19494259-19494278 None:intergenic 20.0%
!!! ACATAGAAATTTTACTTTGT+CGG - chr3_1:19494259-19494278 Msa0351930:intron 20.0%
!!! ATTTAAATTTTATGACAGAC+CGG - chr3_1:19494370-19494389 Msa0351930:intron 20.0%
!!! ACTATGTAAATCATGTTTTT+TGG - chr3_1:19494425-19494444 Msa0351930:intron 20.0%
!!! CTATGTAAATCATGTTTTTT+GGG - chr3_1:19494426-19494445 Msa0351930:intron 20.0%
!!! TTATTTTATTTTCTGCAAGT+TGG + chr3_1:19495228-19495247 None:intergenic 20.0%
!!! TAAATTTGATTTCTCTCTTA+TGG - chr3_1:19495245-19495264 Msa0351930:CDS 20.0%
!! TTATTGTATTATGATGTGAA+GGG - chr3_1:19495292-19495311 Msa0351930:CDS 20.0%
!!! CAAAGTTTTATATATGGAAA+TGG - chr3_1:19495359-19495378 Msa0351930:five_prime_UTR 20.0%
!! CAATAACAAGCAATAATATA+TGG + chr3_1:19493727-19493746 None:intergenic 20.0%
!! TTATGTAATATTATACTGTG+TGG - chr3_1:19493785-19493804 Msa0351930:CDS 20.0%
!! AAATTTAACAATATGTGAAC+AGG - chr3_1:19493899-19493918 Msa0351930:CDS 20.0%
!! TATTGAAAAAGTAAATAACC+AGG + chr3_1:19494223-19494242 None:intergenic 20.0%
!! AAAATTTCTATGTAGGTTAA+TGG + chr3_1:19494252-19494271 None:intergenic 20.0%
!! ACAAAGTAAAATTTCTATGT+AGG + chr3_1:19494259-19494278 None:intergenic 20.0%
!!! ACATAGAAATTTTACTTTGT+CGG - chr3_1:19494259-19494278 Msa0351930:intron 20.0%
!!! ATTTAAATTTTATGACAGAC+CGG - chr3_1:19494370-19494389 Msa0351930:intron 20.0%
!!! ACTATGTAAATCATGTTTTT+TGG - chr3_1:19494425-19494444 Msa0351930:intron 20.0%
!!! CTATGTAAATCATGTTTTTT+GGG - chr3_1:19494426-19494445 Msa0351930:intron 20.0%
!!! TTATTTTATTTTCTGCAAGT+TGG + chr3_1:19495228-19495247 None:intergenic 20.0%
!!! TAAATTTGATTTCTCTCTTA+TGG - chr3_1:19495245-19495264 Msa0351930:CDS 20.0%
!! TTATTGTATTATGATGTGAA+GGG - chr3_1:19495292-19495311 Msa0351930:CDS 20.0%
!!! CAAAGTTTTATATATGGAAA+TGG - chr3_1:19495359-19495378 Msa0351930:five_prime_UTR 20.0%
!! TCATAATCAATGATAATGAG+TGG + chr3_1:19493456-19493475 None:intergenic 25.0%
!! TTTCTCTTTTTCTTATCACT+TGG + chr3_1:19493500-19493519 None:intergenic 25.0%
!! TATAATGATGATGACAATGA+AGG - chr3_1:19493538-19493557 Msa0351930:three_prime_UTR 25.0%
! TACCACTTTAATTATGAGAA+AGG - chr3_1:19493835-19493854 Msa0351930:CDS 25.0%
! ATCCTTTCTCATAATTAAAG+TGG + chr3_1:19493840-19493859 None:intergenic 25.0%
!!! TCATCAAAAAGCATTAAAAC+TGG + chr3_1:19493933-19493952 None:intergenic 25.0%
!!! TGCTTTTTGATGATATGATA+TGG - chr3_1:19493940-19493959 Msa0351930:CDS 25.0%
! TAGAAATGCTTTGTCTAAAT+AGG + chr3_1:19494397-19494416 None:intergenic 25.0%
! ACTAGTTCGAAAAAACATAT+TGG - chr3_1:19494577-19494596 Msa0351930:intron 25.0%
! TCTTGAAATTAAACTACCAT+AGG + chr3_1:19494686-19494705 None:intergenic 25.0%
!!! TTTCTACGATAATTTTCAAG+TGG - chr3_1:19494728-19494747 Msa0351930:intron 25.0%
!!! AGCTTTGTTTTACTTCTTTT+AGG - chr3_1:19495083-19495102 Msa0351930:intron 25.0%
! CTTATTGTATTATGATGTGA+AGG - chr3_1:19495291-19495310 Msa0351930:CDS 25.0%
!! TCATAATCAATGATAATGAG+TGG + chr3_1:19493456-19493475 None:intergenic 25.0%
!! TTTCTCTTTTTCTTATCACT+TGG + chr3_1:19493500-19493519 None:intergenic 25.0%
!! TATAATGATGATGACAATGA+AGG - chr3_1:19493538-19493557 Msa0351930:three_prime_UTR 25.0%
! TACCACTTTAATTATGAGAA+AGG - chr3_1:19493835-19493854 Msa0351930:CDS 25.0%
! ATCCTTTCTCATAATTAAAG+TGG + chr3_1:19493840-19493859 None:intergenic 25.0%
!!! TCATCAAAAAGCATTAAAAC+TGG + chr3_1:19493933-19493952 None:intergenic 25.0%
!!! TGCTTTTTGATGATATGATA+TGG - chr3_1:19493940-19493959 Msa0351930:CDS 25.0%
! TAGAAATGCTTTGTCTAAAT+AGG + chr3_1:19494397-19494416 None:intergenic 25.0%
! ACTAGTTCGAAAAAACATAT+TGG - chr3_1:19494577-19494596 Msa0351930:intron 25.0%
! TCTTGAAATTAAACTACCAT+AGG + chr3_1:19494686-19494705 None:intergenic 25.0%
!!! TTTCTACGATAATTTTCAAG+TGG - chr3_1:19494728-19494747 Msa0351930:intron 25.0%
!!! AGCTTTGTTTTACTTCTTTT+AGG - chr3_1:19495083-19495102 Msa0351930:intron 25.0%
! CTTATTGTATTATGATGTGA+AGG - chr3_1:19495291-19495310 Msa0351930:CDS 25.0%
AACAATGGAAAACCAATCAA+TGG - chr3_1:19493397-19493416 Msa0351930:three_prime_UTR 30.0%
!! GATAGTGATAATTGATGATG+AGG + chr3_1:19493434-19493453 None:intergenic 30.0%
CTAAAACTGTAGCTTCTAAA+AGG - chr3_1:19493684-19493703 Msa0351930:CDS 30.0%
AATATTATACTGTGTGGAAC+TGG - chr3_1:19493791-19493810 Msa0351930:CDS 30.0%
AAAACTCCCATGACAAATTA+CGG + chr3_1:19493982-19494001 None:intergenic 30.0%
TATACTGTCAAAAAATCACC+TGG - chr3_1:19494202-19494221 Msa0351930:intron 30.0%
!!! ACGCCATTTTTAGTACTATT+CGG + chr3_1:19494324-19494343 None:intergenic 30.0%
AATAGTACTAAAAATGGCGT+AGG - chr3_1:19494324-19494343 Msa0351930:intron 30.0%
!!! TGTTTTTTGGGCAAATTCTA+CGG - chr3_1:19494438-19494457 Msa0351930:intron 30.0%
TAACTTGAAACTACTACTCA+TGG - chr3_1:19494489-19494508 Msa0351930:intron 30.0%
! AAACGAATATGAGTTGAGTT+TGG + chr3_1:19494619-19494638 None:intergenic 30.0%
! AACTCATATTCGTTTTCCTT+TGG - chr3_1:19494624-19494643 Msa0351930:intron 30.0%
! ATATTCGTTTTCCTTTGGTT+TGG - chr3_1:19494629-19494648 Msa0351930:intron 30.0%
TTAAACTACCATAGGTGAAA+CGG + chr3_1:19494678-19494697 None:intergenic 30.0%
! TTTAATTTCAAGAGCGACAT+CGG - chr3_1:19494693-19494712 Msa0351930:intron 30.0%
CTATCAACAATAGAGAAACT+TGG - chr3_1:19494981-19495000 Msa0351930:intron 30.0%
GGAACAAGATAAACAAACAA+AGG + chr3_1:19495110-19495129 None:intergenic 30.0%
AACAATGGAAAACCAATCAA+TGG - chr3_1:19493397-19493416 Msa0351930:three_prime_UTR 30.0%
!! GATAGTGATAATTGATGATG+AGG + chr3_1:19493434-19493453 None:intergenic 30.0%
CTAAAACTGTAGCTTCTAAA+AGG - chr3_1:19493684-19493703 Msa0351930:CDS 30.0%
AATATTATACTGTGTGGAAC+TGG - chr3_1:19493791-19493810 Msa0351930:CDS 30.0%
AAAACTCCCATGACAAATTA+CGG + chr3_1:19493982-19494001 None:intergenic 30.0%
TATACTGTCAAAAAATCACC+TGG - chr3_1:19494202-19494221 Msa0351930:intron 30.0%
!!! ACGCCATTTTTAGTACTATT+CGG + chr3_1:19494324-19494343 None:intergenic 30.0%
AATAGTACTAAAAATGGCGT+AGG - chr3_1:19494324-19494343 Msa0351930:intron 30.0%
!!! TGTTTTTTGGGCAAATTCTA+CGG - chr3_1:19494438-19494457 Msa0351930:intron 30.0%
TAACTTGAAACTACTACTCA+TGG - chr3_1:19494489-19494508 Msa0351930:intron 30.0%
! AAACGAATATGAGTTGAGTT+TGG + chr3_1:19494619-19494638 None:intergenic 30.0%
! AACTCATATTCGTTTTCCTT+TGG - chr3_1:19494624-19494643 Msa0351930:intron 30.0%
! ATATTCGTTTTCCTTTGGTT+TGG - chr3_1:19494629-19494648 Msa0351930:intron 30.0%
TTAAACTACCATAGGTGAAA+CGG + chr3_1:19494678-19494697 None:intergenic 30.0%
! TTTAATTTCAAGAGCGACAT+CGG - chr3_1:19494693-19494712 Msa0351930:intron 30.0%
CTATCAACAATAGAGAAACT+TGG - chr3_1:19494981-19495000 Msa0351930:intron 30.0%
GGAACAAGATAAACAAACAA+AGG + chr3_1:19495110-19495129 None:intergenic 30.0%
TAACAATATGTGAACAGGAG+TGG - chr3_1:19493904-19493923 Msa0351930:CDS 35.0%
! TTGATGATATGATATGGCCT+AGG - chr3_1:19493946-19493965 Msa0351930:CDS 35.0%
ATTACGGCTTATGTATACCT+AGG + chr3_1:19493966-19493985 None:intergenic 35.0%
! ACATAAGCCGTAATTTGTCA+TGG - chr3_1:19493972-19493991 Msa0351930:CDS 35.0%
! CATAAGCCGTAATTTGTCAT+GGG - chr3_1:19493973-19493992 Msa0351930:CDS 35.0%
TCCAGTAAGTACAACTCATA+TGG - chr3_1:19494045-19494064 Msa0351930:intron 35.0%
ACCATATGAGTTGTACTTAC+TGG + chr3_1:19494049-19494068 None:intergenic 35.0%
AAGCAAATCAAATGTCTCCT+CGG + chr3_1:19494078-19494097 None:intergenic 35.0%
!! ACATTTGATTTGCTTAGACG+CGG - chr3_1:19494083-19494102 Msa0351930:intron 35.0%
!! ACACAAAGTGTTGAGAAGTA+GGG + chr3_1:19494125-19494144 None:intergenic 35.0%
! CTGGACTCTTTAGGAAAAAA+AGG - chr3_1:19494176-19494195 Msa0351930:CDS 35.0%
!! ACTTTGTCGGACTTTTAAGT+AGG - chr3_1:19494272-19494291 Msa0351930:intron 35.0%
TTTAAGTAGGTGAATACGTC+AGG - chr3_1:19494285-19494304 Msa0351930:intron 35.0%
! TACTATTCGGACCTTTTCAA+AGG + chr3_1:19494311-19494330 None:intergenic 35.0%
GGTCCGAATAGTACTAAAAA+TGG - chr3_1:19494318-19494337 Msa0351930:intron 35.0%
ATGCTTTGTCTAAATAGGTC+CGG + chr3_1:19494392-19494411 None:intergenic 35.0%
GTCTCACTCATTAAACAAAG+AGG + chr3_1:19494542-19494561 None:intergenic 35.0%
AATTCAACTGTATTCCCACT+TGG - chr3_1:19494828-19494847 Msa0351930:intron 35.0%
ATTCAACTGTATTCCCACTT+GGG - chr3_1:19494829-19494848 Msa0351930:intron 35.0%
CATTCTTGTGAGGAGTTTAA+CGG + chr3_1:19494889-19494908 None:intergenic 35.0%
TAACAATATGTGAACAGGAG+TGG - chr3_1:19493904-19493923 Msa0351930:CDS 35.0%
! TTGATGATATGATATGGCCT+AGG - chr3_1:19493946-19493965 Msa0351930:CDS 35.0%
ATTACGGCTTATGTATACCT+AGG + chr3_1:19493966-19493985 None:intergenic 35.0%
! ACATAAGCCGTAATTTGTCA+TGG - chr3_1:19493972-19493991 Msa0351930:CDS 35.0%
! CATAAGCCGTAATTTGTCAT+GGG - chr3_1:19493973-19493992 Msa0351930:CDS 35.0%
TCCAGTAAGTACAACTCATA+TGG - chr3_1:19494045-19494064 Msa0351930:intron 35.0%
ACCATATGAGTTGTACTTAC+TGG + chr3_1:19494049-19494068 None:intergenic 35.0%
AAGCAAATCAAATGTCTCCT+CGG + chr3_1:19494078-19494097 None:intergenic 35.0%
!! ACATTTGATTTGCTTAGACG+CGG - chr3_1:19494083-19494102 Msa0351930:intron 35.0%
!! ACACAAAGTGTTGAGAAGTA+GGG + chr3_1:19494125-19494144 None:intergenic 35.0%
! CTGGACTCTTTAGGAAAAAA+AGG - chr3_1:19494176-19494195 Msa0351930:CDS 35.0%
!! ACTTTGTCGGACTTTTAAGT+AGG - chr3_1:19494272-19494291 Msa0351930:intron 35.0%
TTTAAGTAGGTGAATACGTC+AGG - chr3_1:19494285-19494304 Msa0351930:intron 35.0%
! TACTATTCGGACCTTTTCAA+AGG + chr3_1:19494311-19494330 None:intergenic 35.0%
GGTCCGAATAGTACTAAAAA+TGG - chr3_1:19494318-19494337 Msa0351930:intron 35.0%
ATGCTTTGTCTAAATAGGTC+CGG + chr3_1:19494392-19494411 None:intergenic 35.0%
GTCTCACTCATTAAACAAAG+AGG + chr3_1:19494542-19494561 None:intergenic 35.0%
AATTCAACTGTATTCCCACT+TGG - chr3_1:19494828-19494847 Msa0351930:intron 35.0%
ATTCAACTGTATTCCCACTT+GGG - chr3_1:19494829-19494848 Msa0351930:intron 35.0%
CATTCTTGTGAGGAGTTTAA+CGG + chr3_1:19494889-19494908 None:intergenic 35.0%
GCAGAATAGAGACCATTGAT+TGG + chr3_1:19493412-19493431 None:intergenic 40.0%
GATCAAGCTGTTACTACAGA+TGG + chr3_1:19493573-19493592 None:intergenic 40.0%
!! TGAGAGTTTTGTGTTGAAGG+AGG + chr3_1:19493605-19493624 None:intergenic 40.0%
!! GTGTGAGAGTTTTGTGTTGA+AGG + chr3_1:19493608-19493627 None:intergenic 40.0%
! TCACACTTTCTCACCTTTTC+TGG - chr3_1:19493622-19493641 Msa0351930:CDS 40.0%
!! ACCTTTTCTGGTCAAATCCA+TGG - chr3_1:19493634-19493653 Msa0351930:CDS 40.0%
!!! GTTTTAGAGACAGAAGGAAC+TGG + chr3_1:19493671-19493690 None:intergenic 40.0%
!!! GCTACAGTTTTAGAGACAGA+AGG + chr3_1:19493677-19493696 None:intergenic 40.0%
ACTCATATGGTAAAAGACCG+AGG - chr3_1:19494058-19494077 Msa0351930:intron 40.0%
!! CATTTGATTTGCTTAGACGC+GGG - chr3_1:19494084-19494103 Msa0351930:intron 40.0%
! AGTGTTGAGAAGTAGGGAAT+CGG + chr3_1:19494119-19494138 None:intergenic 40.0%
!! CACACAAAGTGTTGAGAAGT+AGG + chr3_1:19494126-19494145 None:intergenic 40.0%
!!! GTGAGTTTTATTGTACTCGC+TGG - chr3_1:19494157-19494176 Msa0351930:intron 40.0%
! AATACGTCAGGCCTTTGAAA+AGG - chr3_1:19494297-19494316 Msa0351930:intron 40.0%
!! TTTTTGGGCAAATTCTACGG+TGG - chr3_1:19494441-19494460 Msa0351930:intron 40.0%
CTACTACTCATGGTACTTGT+CGG - chr3_1:19494499-19494518 Msa0351930:intron 40.0%
TGTGTGTTCTACCAAACCAA+AGG + chr3_1:19494643-19494662 None:intergenic 40.0%
CAAGTGGTCTATCATAGAAC+CGG - chr3_1:19494744-19494763 Msa0351930:intron 40.0%
AACCTCTCTCTCCAAAAAAC+AGG + chr3_1:19494770-19494789 None:intergenic 40.0%
TTCAACTGTATTCCCACTTG+GGG - chr3_1:19494830-19494849 Msa0351930:intron 40.0%
CGTTAAACTCCTCACAAGAA+TGG - chr3_1:19494887-19494906 Msa0351930:intron 40.0%
TAGCGATAATCCTGCTTTCT+CGG + chr3_1:19494964-19494983 None:intergenic 40.0%
CTCTCAAAAGCTGAAGAACT+CGG - chr3_1:19495008-19495027 Msa0351930:intron 40.0%
TCCAGAAGATAATGTTGTCG+AGG - chr3_1:19495127-19495146 Msa0351930:intron 40.0%
ACCTCGACAACATTATCTTC+TGG + chr3_1:19495131-19495150 None:intergenic 40.0%
GAAGATAATGTTGTCGAGGT+TGG - chr3_1:19495131-19495150 Msa0351930:intron 40.0%
! GTTGCTTTGATCTGTGTTGT+TGG - chr3_1:19495167-19495186 Msa0351930:CDS 40.0%
GCAGAATAGAGACCATTGAT+TGG + chr3_1:19493412-19493431 None:intergenic 40.0%
GATCAAGCTGTTACTACAGA+TGG + chr3_1:19493573-19493592 None:intergenic 40.0%
!! TGAGAGTTTTGTGTTGAAGG+AGG + chr3_1:19493605-19493624 None:intergenic 40.0%
!! GTGTGAGAGTTTTGTGTTGA+AGG + chr3_1:19493608-19493627 None:intergenic 40.0%
! TCACACTTTCTCACCTTTTC+TGG - chr3_1:19493622-19493641 Msa0351930:CDS 40.0%
!! ACCTTTTCTGGTCAAATCCA+TGG - chr3_1:19493634-19493653 Msa0351930:CDS 40.0%
!!! GTTTTAGAGACAGAAGGAAC+TGG + chr3_1:19493671-19493690 None:intergenic 40.0%
!!! GCTACAGTTTTAGAGACAGA+AGG + chr3_1:19493677-19493696 None:intergenic 40.0%
ACTCATATGGTAAAAGACCG+AGG - chr3_1:19494058-19494077 Msa0351930:intron 40.0%
!! CATTTGATTTGCTTAGACGC+GGG - chr3_1:19494084-19494103 Msa0351930:intron 40.0%
! AGTGTTGAGAAGTAGGGAAT+CGG + chr3_1:19494119-19494138 None:intergenic 40.0%
!! CACACAAAGTGTTGAGAAGT+AGG + chr3_1:19494126-19494145 None:intergenic 40.0%
!!! GTGAGTTTTATTGTACTCGC+TGG - chr3_1:19494157-19494176 Msa0351930:intron 40.0%
! AATACGTCAGGCCTTTGAAA+AGG - chr3_1:19494297-19494316 Msa0351930:intron 40.0%
!! TTTTTGGGCAAATTCTACGG+TGG - chr3_1:19494441-19494460 Msa0351930:intron 40.0%
CTACTACTCATGGTACTTGT+CGG - chr3_1:19494499-19494518 Msa0351930:intron 40.0%
TGTGTGTTCTACCAAACCAA+AGG + chr3_1:19494643-19494662 None:intergenic 40.0%
CAAGTGGTCTATCATAGAAC+CGG - chr3_1:19494744-19494763 Msa0351930:intron 40.0%
AACCTCTCTCTCCAAAAAAC+AGG + chr3_1:19494770-19494789 None:intergenic 40.0%
TTCAACTGTATTCCCACTTG+GGG - chr3_1:19494830-19494849 Msa0351930:intron 40.0%
CGTTAAACTCCTCACAAGAA+TGG - chr3_1:19494887-19494906 Msa0351930:intron 40.0%
TAGCGATAATCCTGCTTTCT+CGG + chr3_1:19494964-19494983 None:intergenic 40.0%
CTCTCAAAAGCTGAAGAACT+CGG - chr3_1:19495008-19495027 Msa0351930:intron 40.0%
TCCAGAAGATAATGTTGTCG+AGG - chr3_1:19495127-19495146 Msa0351930:intron 40.0%
ACCTCGACAACATTATCTTC+TGG + chr3_1:19495131-19495150 None:intergenic 40.0%
GAAGATAATGTTGTCGAGGT+TGG - chr3_1:19495131-19495150 Msa0351930:intron 40.0%
! GTTGCTTTGATCTGTGTTGT+TGG - chr3_1:19495167-19495186 Msa0351930:CDS 40.0%
GCCATGGATTTGACCAGAAA+AGG + chr3_1:19493638-19493657 None:intergenic 45.0%
! GAGACAGAAGGAACTGGTTT+GGG + chr3_1:19493665-19493684 None:intergenic 45.0%
AGAGACAGAAGGAACTGGTT+TGG + chr3_1:19493666-19493685 None:intergenic 45.0%
GTGTTGAGAAGTAGGGAATC+GGG + chr3_1:19494118-19494137 None:intergenic 45.0%
TTGTACTCGCTGGACTCTTT+AGG - chr3_1:19494167-19494186 Msa0351930:CDS 45.0%
TCTCAAGTGTTTGTCCACCA+TGG + chr3_1:19494468-19494487 None:intergenic 45.0%
!! GAGTGAGACACTGACTTGAT+TGG - chr3_1:19494553-19494572 Msa0351930:intron 45.0%
AGGTGAAACGGTGACTTGAT+TGG + chr3_1:19494666-19494685 None:intergenic 45.0%
TCAAGTCACCGTTTCACCTA+TGG - chr3_1:19494667-19494686 Msa0351930:intron 45.0%
!!! CATAGAACCGGCCTGTTTTT+TGG - chr3_1:19494756-19494775 Msa0351930:intron 45.0%
TCTCTCTCCAAAAAACAGGC+CGG + chr3_1:19494766-19494785 None:intergenic 45.0%
TTCTAGGTTGTTCCCCAAGT+GGG + chr3_1:19494845-19494864 None:intergenic 45.0%
GTAGACGTTACAGCACTTCT+AGG + chr3_1:19494861-19494880 None:intergenic 45.0%
TCAGTTGCTCCATTCTTGTG+AGG + chr3_1:19494899-19494918 None:intergenic 45.0%
GCAACTGAGACTGTTAACCA+AGG - chr3_1:19494911-19494930 Msa0351930:intron 45.0%
TTAACCAAGGCAGAGAAAGC+AGG - chr3_1:19494924-19494943 Msa0351930:intron 45.0%
TAAACCTGCTTTCTCTGCCT+TGG + chr3_1:19494931-19494950 None:intergenic 45.0%
! CGAGTTCTTCAGCTTTTGAG+AGG + chr3_1:19495010-19495029 None:intergenic 45.0%
AAGAGTGATCCTGGAGTTGA+TGG + chr3_1:19495056-19495075 None:intergenic 45.0%
!! TGTTGTCGAGGTTGGTTTAC+AGG - chr3_1:19495139-19495158 Msa0351930:intron 45.0%
! GCTTTGATCTGTGTTGTTGG+TGG - chr3_1:19495170-19495189 Msa0351930:CDS 45.0%
GCCATGGATTTGACCAGAAA+AGG + chr3_1:19493638-19493657 None:intergenic 45.0%
! GAGACAGAAGGAACTGGTTT+GGG + chr3_1:19493665-19493684 None:intergenic 45.0%
AGAGACAGAAGGAACTGGTT+TGG + chr3_1:19493666-19493685 None:intergenic 45.0%
GTGTTGAGAAGTAGGGAATC+GGG + chr3_1:19494118-19494137 None:intergenic 45.0%
TTGTACTCGCTGGACTCTTT+AGG - chr3_1:19494167-19494186 Msa0351930:CDS 45.0%
TCTCAAGTGTTTGTCCACCA+TGG + chr3_1:19494468-19494487 None:intergenic 45.0%
!! GAGTGAGACACTGACTTGAT+TGG - chr3_1:19494553-19494572 Msa0351930:intron 45.0%
AGGTGAAACGGTGACTTGAT+TGG + chr3_1:19494666-19494685 None:intergenic 45.0%
TCAAGTCACCGTTTCACCTA+TGG - chr3_1:19494667-19494686 Msa0351930:intron 45.0%
!!! CATAGAACCGGCCTGTTTTT+TGG - chr3_1:19494756-19494775 Msa0351930:intron 45.0%
TCTCTCTCCAAAAAACAGGC+CGG + chr3_1:19494766-19494785 None:intergenic 45.0%
TTCTAGGTTGTTCCCCAAGT+GGG + chr3_1:19494845-19494864 None:intergenic 45.0%
GTAGACGTTACAGCACTTCT+AGG + chr3_1:19494861-19494880 None:intergenic 45.0%
TCAGTTGCTCCATTCTTGTG+AGG + chr3_1:19494899-19494918 None:intergenic 45.0%
GCAACTGAGACTGTTAACCA+AGG - chr3_1:19494911-19494930 Msa0351930:intron 45.0%
TTAACCAAGGCAGAGAAAGC+AGG - chr3_1:19494924-19494943 Msa0351930:intron 45.0%
TAAACCTGCTTTCTCTGCCT+TGG + chr3_1:19494931-19494950 None:intergenic 45.0%
! CGAGTTCTTCAGCTTTTGAG+AGG + chr3_1:19495010-19495029 None:intergenic 45.0%
AAGAGTGATCCTGGAGTTGA+TGG + chr3_1:19495056-19495075 None:intergenic 45.0%
!! TGTTGTCGAGGTTGGTTTAC+AGG - chr3_1:19495139-19495158 Msa0351930:intron 45.0%
! GCTTTGATCTGTGTTGTTGG+TGG - chr3_1:19495170-19495189 Msa0351930:CDS 45.0%
!! AACTGGTTTGGGAGTAGCCA+TGG + chr3_1:19493654-19493673 None:intergenic 50.0%
GCAAATTCTACGGTGGTCCA+TGG - chr3_1:19494448-19494467 Msa0351930:intron 50.0%
AATTCTACGGTGGTCCATGG+TGG - chr3_1:19494451-19494470 Msa0351930:intron 50.0%
! AGAGCGACATCGGTTGTCAT+TGG - chr3_1:19494703-19494722 Msa0351930:intron 50.0%
!!! GGCCTGTTTTTTGGAGAGAG+AGG - chr3_1:19494765-19494784 Msa0351930:intron 50.0%
CTTCTAGGTTGTTCCCCAAG+TGG + chr3_1:19494846-19494865 None:intergenic 50.0%
CGATAATCCTGCTTTCTCGG+CGG + chr3_1:19494961-19494980 None:intergenic 50.0%
GCTACTGATCCATCAACTCC+AGG - chr3_1:19495044-19495063 Msa0351930:intron 50.0%
CTGAGTGTGAAGAGTGATCC+TGG + chr3_1:19495065-19495084 None:intergenic 50.0%
!! TGTGTTGTTGGTGGTTCTGC+TGG - chr3_1:19495179-19495198 Msa0351930:CDS 50.0%
!! AACTGGTTTGGGAGTAGCCA+TGG + chr3_1:19493654-19493673 None:intergenic 50.0%
GCAAATTCTACGGTGGTCCA+TGG - chr3_1:19494448-19494467 Msa0351930:intron 50.0%
AATTCTACGGTGGTCCATGG+TGG - chr3_1:19494451-19494470 Msa0351930:intron 50.0%
! AGAGCGACATCGGTTGTCAT+TGG - chr3_1:19494703-19494722 Msa0351930:intron 50.0%
!!! GGCCTGTTTTTTGGAGAGAG+AGG - chr3_1:19494765-19494784 Msa0351930:intron 50.0%
CTTCTAGGTTGTTCCCCAAG+TGG + chr3_1:19494846-19494865 None:intergenic 50.0%
CGATAATCCTGCTTTCTCGG+CGG + chr3_1:19494961-19494980 None:intergenic 50.0%
GCTACTGATCCATCAACTCC+AGG - chr3_1:19495044-19495063 Msa0351930:intron 50.0%
CTGAGTGTGAAGAGTGATCC+TGG + chr3_1:19495065-19495084 None:intergenic 50.0%
!! TGTGTTGTTGGTGGTTCTGC+TGG - chr3_1:19495179-19495198 Msa0351930:CDS 50.0%
TTATCAGCCGCCGAGAAAGC+AGG - chr3_1:19494951-19494970 Msa0351930:intron 55.0%
!! CGAGGTTGGTTTACAGGCTG+TGG - chr3_1:19495145-19495164 Msa0351930:intron 55.0%
!!! GGTGGTTCTGCTGGTTTTGC+TGG - chr3_1:19495188-19495207 Msa0351930:CDS 55.0%
TTATCAGCCGCCGAGAAAGC+AGG - chr3_1:19494951-19494970 Msa0351930:intron 55.0%
!! CGAGGTTGGTTTACAGGCTG+TGG - chr3_1:19495145-19495164 Msa0351930:intron 55.0%
!!! GGTGGTTCTGCTGGTTTTGC+TGG - chr3_1:19495188-19495207 Msa0351930:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 19493391 19495462 19493391 ID=Msa0351930;Name=Msa0351930
chr3_1 mRNA 19493391 19495462 19493391 ID=Msa0351930-mRNA-1;Parent=Msa0351930;Name=Msa0351930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=151|0|0.66|0.66|1|1|3|215|205
chr3_1 exon 19493391 19494025 19493391 ID=Msa0351930-mRNA-1:exon:4565;Parent=Msa0351930-mRNA-1
chr3_1 exon 19494165 19494198 19494165 ID=Msa0351930-mRNA-1:exon:4564;Parent=Msa0351930-mRNA-1
chr3_1 exon 19495148 19495462 19495148 ID=Msa0351930-mRNA-1:exon:4563;Parent=Msa0351930-mRNA-1
chr3_1 five_prime_UTR 19495312 19495462 19495312 ID=Msa0351930-mRNA-1:five_prime_utr;Parent=Msa0351930-mRNA-1
chr3_1 CDS 19495148 19495311 19495148 ID=Msa0351930-mRNA-1:cds;Parent=Msa0351930-mRNA-1
chr3_1 CDS 19494165 19494198 19494165 ID=Msa0351930-mRNA-1:cds;Parent=Msa0351930-mRNA-1
chr3_1 CDS 19493606 19494025 19493606 ID=Msa0351930-mRNA-1:cds;Parent=Msa0351930-mRNA-1
chr3_1 three_prime_UTR 19493391 19493605 19493391 ID=Msa0351930-mRNA-1:three_prime_utr;Parent=Msa0351930-mRNA-1
Gene Sequence

>Msa0351930

ATGATGATGACAATGAAGGCTTCAGCATCCATCTGTAGTAACAGCTTGATCTTCTATTCTCCTCCTTCAACACAAAACTCTCACACTTTCTCACCTTTTCTGGTCAAATCCATGGCTACTCCCAAACCAGTTCCTTCTGTCTCTAAAACTGTAGCTTCTAAAAGAACACACACCAATCAAGTCACCGTTTCACCTATGAATTCAACTGTATTCCCACTTGGGGAACAACCTAGAAGTGCTGTAACGTCTACACAATCCGTTAAACTCCTCACAAGAATGGAGCAACTGAGACTGTTAACCAAGGCAGAGAAAGCAGGTTTATTATCAGCCGCCGAGAAAGCAGGATTATCGCTATCAACAATAGAGAAACTTGGTCTCCTCTCAAAAGCTGAAGAACTCGGTGTTTTATCAGCTGCTACTGATCCATCAACTCCAGGATCACTCTTCACACTCAGCTTTGTTTTACTTCTTTTAGGTCCTTTGTTTGTTTATCTTGTTCCAGAAGATAATGTTGTCGAGGTTGGTTTACAGGCTGTGGTTGCTTTGATCTGTGTTGTTGGTGGTTCTGCTGGTTTTGCTGGTTCAAGTTTTGTATCCAACTTGCAGAAAATAAAATAA

Protein sequence

>Msa0351930

MMMTMKASASICSNSLIFYSPPSTQNSHTFSPFLVKSMATPKPVPSVSKTVASKRTHTNQVTVSPMNSTVFPLGEQPRSAVTSTQSVKLLTRMEQLRLLTKAEKAGLLSAAEKAGLSLSTIEKLGLLSKAEELGVLSAATDPSTPGSLFTLSFVLLLLGPLFVYLVPEDNVVEVGLQAVVALICVVGGSAGFAGSSFVSNLQKIK*