AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000379

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000379.t1 MTR_1g047550 85.526 76 11 0 1 76 90 165 1.00e-37 134
MS.gene000379.t1 MTR_8g079502 82.895 76 13 0 1 76 90 165 3.36e-36 130
MS.gene000379.t1 MTR_8g463110 63.333 120 41 1 249 365 1 120 1.31e-32 129
MS.gene000379.t1 MTR_4g131030 78.947 76 16 0 1 76 107 182 1.42e-30 116
MS.gene000379.t1 MTR_1g054265 75.000 76 19 0 1 76 90 165 5.09e-30 113
MS.gene000379.t1 MTR_1g063160 73.684 76 20 0 1 76 90 165 6.42e-30 113
MS.gene000379.t1 MTR_2g061500 73.585 53 14 0 131 183 1 53 1.77e-19 84.3
MS.gene000379.t1 MTR_3g053920 49.612 129 49 4 190 303 153 280 5.15e-19 86.3
MS.gene000379.t1 MTR_3g053920 73.585 53 14 0 131 183 1 53 2.43e-18 84.3
MS.gene000379.t1 MTR_8g051580 42.667 75 43 0 2 76 91 165 2.73e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 92 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAGCTGACCGCGAGATTC+AGG 0.319010 1.1:-30866352 MS.gene000379:CDS
TCTTTAAGCTCGAAGAGTTT+TGG 0.322007 1.1:+30867791 None:intergenic
TCGACTCGGTGGCTAGGTTA+AGG 0.322457 1.1:+30866415 None:intergenic
CCGATGATGGTGTTCGCAAT+TGG 0.336429 1.1:-30865812 MS.gene000379:CDS
CGATGATGGTGTTCGCAATT+GGG 0.354539 1.1:-30865811 MS.gene000379:CDS
GCAGCATTAGGCTTCAAGTC+AGG 0.358175 1.1:+30865786 None:intergenic
ATCCTTTATCACTGTTTGAT+TGG 0.358818 1.1:-30866381 MS.gene000379:CDS
GACTCCTCAGAATTGGCATT+TGG 0.372573 1.1:+30862975 None:intergenic
GACCAATCAAACAGTGATAA+AGG 0.376723 1.1:+30866379 None:intergenic
CGACTCGGTGGCTAGGTTAA+GGG 0.384648 1.1:+30866416 None:intergenic
TCGACATCAAATTTGATTGC+AGG 0.390177 1.1:-30863035 MS.gene000379:CDS
AGCCATACGCTCGCTGAAAT+AGG 0.391985 1.1:+30866326 None:intergenic
TTTGATTGCAGGCCGCCCTT+TGG 0.396950 1.1:-30863024 MS.gene000379:CDS
GACTCCAACTCGAACAAATC+CGG 0.397292 1.1:+30865834 None:intergenic
GGCCTTACCCTTGCTGAAGA+AGG 0.399942 1.1:-30866444 MS.gene000379:CDS
TTGGTGCTTCGATTACCTGC+TGG 0.400994 1.1:-30863005 MS.gene000379:CDS
CCTTCTCACCTCAATATTGC+TGG 0.403445 1.1:-30866465 MS.gene000379:CDS
CACCACTAGTAGGAGAATTT+CGG 0.407576 1.1:+30863216 None:intergenic
AAGCCTAATGCTGCCCGTAT+TGG 0.422074 1.1:-30865777 MS.gene000379:intron
GAACCAATACGGGCAGCATT+AGG 0.423658 1.1:+30865774 None:intergenic
ATCTTGAGACTCCTCAGAAT+TGG 0.425918 1.1:+30862968 None:intergenic
ATATATGATGCTTCTTGCTC+AGG 0.431128 1.1:-30867699 MS.gene000379:CDS
CATACAAAGAGCTTCAAGAT+TGG 0.433874 1.1:-30867757 MS.gene000379:CDS
CATGGAATTGGCTGGAAGTA+AGG 0.442689 1.1:+30866491 None:intergenic
GTGAGAAGGGTCCATGGAAT+TGG 0.464177 1.1:+30866479 None:intergenic
TATTAGCAGCAGAACCAATA+CGG 0.465854 1.1:+30865763 None:intergenic
CAAACAGTGATAAAGGATAG+TGG 0.481683 1.1:+30866386 None:intergenic
AGCCTTCTTCAGCAAGGGTA+AGG 0.484382 1.1:+30866442 None:intergenic
CCGCGCCACCATGTCCCTGC+TGG 0.494711 1.1:-30863254 MS.gene000379:CDS
ATGTAATTTCACCATTCTGA+AGG 0.496012 1.1:+30862904 None:intergenic
GCATTGACAGCACCACTAGT+AGG 0.499846 1.1:+30863206 None:intergenic
TTCGAGTTGGAGTCCGATGA+TGG 0.502120 1.1:-30865825 MS.gene000379:CDS
TCAGAATTGGCATTTGGAAA+CGG 0.503289 1.1:+30862981 None:intergenic
CTTACTTCCAGCCAATTCCA+TGG 0.506897 1.1:-30866490 MS.gene000379:CDS
GAGGAGTCTCAAGATGCTAC+TGG 0.507747 1.1:-30862960 MS.gene000379:CDS
GCATTTGGAAACGGTCCAGC+AGG 0.512481 1.1:+30862990 None:intergenic
TGCCAAAGCAAAACATGGCT+CGG 0.514345 1.1:-30863102 MS.gene000379:CDS
GTAGGAGAATTTCGGCAAGC+AGG 0.514580 1.1:+30863224 None:intergenic
AATAGAGGAGAGCAGAAACT+AGG 0.515080 1.1:+30866538 None:intergenic
TAGGAACAAATGTTAGTCAT+GGG 0.515296 1.1:-30862845 MS.gene000379:CDS
CTGAACTAAAGAAGAGAAAG+AGG 0.515936 1.1:-30862935 MS.gene000379:CDS
ATTGGTTTATAAAGCAAGGA+TGG 0.520595 1.1:+30866630 None:intergenic
GAAACATGGAAGGAGACAAC+AGG 0.523685 1.1:+30866513 None:intergenic
TTGCCCGGATTTGTTCGAGT+TGG 0.526596 1.1:-30865838 MS.gene000379:CDS
CCTGAATCTCGCGGTCAGCT+AGG 0.527672 1.1:+30866352 None:intergenic
CAGCATTAGGCTTCAAGTCA+GGG 0.532733 1.1:+30865787 None:intergenic
TGACATTGGTTTATAAAGCA+AGG 0.533258 1.1:+30866626 None:intergenic
CCAGCAATATTGAGGTGAGA+AGG 0.533379 1.1:+30866465 None:intergenic
ATAGGAACAAATGTTAGTCA+TGG 0.541273 1.1:-30862846 MS.gene000379:CDS
GAAGGGTCCATGGAATTGGC+TGG 0.542173 1.1:+30866483 None:intergenic
TACATCATTTGCTGCTGATG+TGG 0.543329 1.1:-30862886 MS.gene000379:CDS
ACACACAGACAAAGTTTGCC+CGG 0.544658 1.1:-30865853 MS.gene000379:intron
ACTCCAACTCGAACAAATCC+GGG 0.547955 1.1:+30865835 None:intergenic
CCAATTGCGAACACCATCAT+CGG 0.549954 1.1:+30865812 None:intergenic
ATTAGCAGCAGAACCAATAC+GGG 0.553476 1.1:+30865764 None:intergenic
CAAGCAGGAGATACACCAGC+AGG 0.556540 1.1:+30863239 None:intergenic
AGGAGACAACAGGAAAATAG+AGG 0.558191 1.1:+30866523 None:intergenic
ATTTGCTGCTGATGTGGGTG+AGG 0.558613 1.1:-30862880 MS.gene000379:CDS
ATTGAGGTGAGAAGGGTCCA+TGG 0.562091 1.1:+30866473 None:intergenic
CAAACGCAGACTGTGTTTCA+CGG 0.566098 1.1:+30866562 None:intergenic
GGTTAAGCCTTCTTCAGCAA+GGG 0.567141 1.1:+30866437 None:intergenic
GGGTAAGGCCAGCAATATTG+AGG 0.570599 1.1:+30866457 None:intergenic
CAGCAATATTGAGGTGAGAA+GGG 0.573339 1.1:+30866466 None:intergenic
GATGATGGTGTTCGCAATTG+GGG 0.573390 1.1:-30865810 MS.gene000379:CDS
TGCAATCAAATTTGATGTCG+AGG 0.573518 1.1:+30863037 None:intergenic
AATTCGTGAAGGTGAAAAGC+AGG 0.574955 1.1:-30867852 MS.gene000379:CDS
CAGGTAATCGAAGCACCAAA+GGG 0.576514 1.1:+30863009 None:intergenic
GATTGTCAACAGCAAGCATA+CGG 0.578956 1.1:+30863168 None:intergenic
GAGGTACCTGTAGAAGAAGA+AGG 0.590154 1.1:+30863056 None:intergenic
GGGTTAAGCCTTCTTCAGCA+AGG 0.592114 1.1:+30866436 None:intergenic
TGCCGAAATTCTCCTACTAG+TGG 0.596291 1.1:-30863218 MS.gene000379:CDS
TGTAATTTCACCATTCTGAA+GGG 0.596801 1.1:+30862905 None:intergenic
GCTTCTTGCTCAGGAACCAG+TGG 0.597226 1.1:-30867690 MS.gene000379:intron
TGGCTGGAAGTAAGGAAACA+TGG 0.605400 1.1:+30866499 None:intergenic
CCAGCAGGGACATGGTGGCG+CGG 0.605579 1.1:+30863254 None:intergenic
AGGATGCTGACCCTTCAGAA+TGG 0.609247 1.1:-30862915 MS.gene000379:CDS
ACGCAGACTGTTGTTGACAT+TGG 0.611852 1.1:+30866612 None:intergenic
ACATCATTTGCTGCTGATGT+GGG 0.613113 1.1:-30862885 MS.gene000379:CDS
GCAGGTAATCGAAGCACCAA+AGG 0.618179 1.1:+30863008 None:intergenic
GAGATACACCAGCAGGGACA+TGG 0.619829 1.1:+30863246 None:intergenic
AGGAACAAATGTTAGTCATG+GGG 0.621613 1.1:-30862844 MS.gene000379:CDS
AATCTTGCCAAAGCAAAACA+TGG 0.623443 1.1:-30863107 MS.gene000379:CDS
GGAACAAATGTTAGTCATGG+GGG 0.626566 1.1:-30862843 MS.gene000379:CDS
GTTTCCAAATGCCAATTCTG+AGG 0.628781 1.1:-30862979 MS.gene000379:CDS
TGGAAGTAAGGAAACATGGA+AGG 0.644031 1.1:+30866503 None:intergenic
TTTGCTGCTGATGTGGGTGA+GGG 0.657507 1.1:-30862879 MS.gene000379:CDS
GAACAAATGTTAGTCATGGG+GGG 0.666834 1.1:-30862842 MS.gene000379:CDS
AATAGGCAGCCTGAATCTCG+CGG 0.670036 1.1:+30866343 None:intergenic
GTAATCGAAGCACCAAAGGG+CGG 0.680225 1.1:+30863012 None:intergenic
ATACTGACACAAATTCGTGA+AGG 0.686922 1.1:-30867863 MS.gene000379:CDS
AAGCAGGAGATACACCAGCA+GGG 0.690523 1.1:+30863240 None:intergenic
ATACACCAGCAGGGACATGG+TGG 0.719754 1.1:+30863249 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAAATAATAAAAT+AGG - chr1.1:30867433-30867452 MS.gene000379:intron 0.0%
!! AATAAATAAATAATAAAATA+GGG - chr1.1:30867434-30867453 MS.gene000379:intron 0.0%
!! TATATTTAATGATTTGATAA+TGG + chr1.1:30865567-30865586 None:intergenic 10.0%
!!! ATATTTAATGATTTGATAAT+GGG + chr1.1:30865566-30865585 None:intergenic 10.0%
!! TTAAATGTTAAACAAATACT+CGG - chr1.1:30865193-30865212 MS.gene000379:intron 15.0%
!! TTAATGTCATATTATGAATT+AGG + chr1.1:30866684-30866703 None:intergenic 15.0%
!! TTTAACTCTATTTATATTTG+AGG + chr1.1:30865110-30865129 None:intergenic 15.0%
!!! ATAAAAATGATTTTTGGTTT+TGG + chr1.1:30866260-30866279 None:intergenic 15.0%
!!! GTGTGTATATATATTTTTTA+TGG + chr1.1:30863792-30863811 None:intergenic 15.0%
!!! TATGTATTATTTTACATGAT+GGG + chr1.1:30865037-30865056 None:intergenic 15.0%
!!! TCTTTTTTTTATTAAAGGAA+TGG + chr1.1:30863717-30863736 None:intergenic 15.0%
!!! TTATGTATTATTTTACATGA+TGG + chr1.1:30865038-30865057 None:intergenic 15.0%
!!! TTTATCAGTTGATTTTAATT+TGG - chr1.1:30863507-30863526 MS.gene000379:intron 15.0%
!!! TTTGACATAAAAATGATTTT+TGG + chr1.1:30866266-30866285 None:intergenic 15.0%
!! AAGAGAAAATTAATAGGTTA+AGG + chr1.1:30867205-30867224 None:intergenic 20.0%
!! AATATAGAAAAAACAAGTTG+TGG - chr1.1:30863370-30863389 MS.gene000379:intron 20.0%
!! AGGTTAAGGTTTATATAAAA+AGG + chr1.1:30867191-30867210 None:intergenic 20.0%
!! ATTAAACAATCCATTTCAAA+TGG - chr1.1:30865246-30865265 MS.gene000379:intron 20.0%
!! CATATACTTATGATTAAAGA+AGG - chr1.1:30867009-30867028 MS.gene000379:intron 20.0%
!! CTCCACTAAATAATAAAATA+GGG - chr1.1:30867323-30867342 MS.gene000379:intron 20.0%
!! CTTCTTTAATCATAAGTATA+TGG + chr1.1:30867011-30867030 None:intergenic 20.0%
!! GGAATTAAGAGAAAATTAAT+AGG + chr1.1:30867211-30867230 None:intergenic 20.0%
!! TAAAAGTGAAATATGCAAAT+AGG - chr1.1:30863062-30863081 MS.gene000379:CDS 20.0%
!! TATAATCATTAAGCTATGTA+AGG - chr1.1:30863910-30863929 MS.gene000379:intron 20.0%
!! TCAATTTGTATGAAAATCAT+CGG - chr1.1:30863420-30863439 MS.gene000379:intron 20.0%
!! TCCACTAAATAATAAAATAG+GGG - chr1.1:30867324-30867343 MS.gene000379:intron 20.0%
!! TCTCCACTAAATAATAAAAT+AGG - chr1.1:30867322-30867341 MS.gene000379:intron 20.0%
!! TGTGTCGAATAATTAAATAT+GGG - chr1.1:30863331-30863350 MS.gene000379:intron 20.0%
!! TTGTGTCGAATAATTAAATA+TGG - chr1.1:30863330-30863349 MS.gene000379:intron 20.0%
!!! AACATATTTTTGTGTAAAAG+TGG - chr1.1:30863393-30863412 MS.gene000379:intron 20.0%
!!! AGTTTTCATTTCAAAATTTG+GGG - chr1.1:30866559-30866578 MS.gene000379:CDS 20.0%
!!! ATTTAGAATAATGAAGCTTT+GGG + chr1.1:30867241-30867260 None:intergenic 20.0%
!!! CAGTTTTCATTTCAAAATTT+GGG - chr1.1:30866558-30866577 MS.gene000379:CDS 20.0%
!!! TATTTAGAATAATGAAGCTT+TGG + chr1.1:30867242-30867261 None:intergenic 20.0%
!!! TCAAGTTCTATAAATCATTT+TGG - chr1.1:30866449-30866468 MS.gene000379:CDS 20.0%
! AGTGGAGAAATATATTTAGT+GGG + chr1.1:30867310-30867329 None:intergenic 25.0%
! ATAAGTTGTTTATGATGTTG+AGG + chr1.1:30865228-30865247 None:intergenic 25.0%
! ATTTCAGTTTCATCACAAAA+TGG - chr1.1:30864479-30864498 MS.gene000379:intron 25.0%
! GATTTATAGAACTTGAGTTA+TGG + chr1.1:30866445-30866464 None:intergenic 25.0%
! GTCTTTATGATTTATGTTGA+TGG + chr1.1:30865273-30865292 None:intergenic 25.0%
! TAGTGGAAGAATATATTTAG+TGG + chr1.1:30867276-30867295 None:intergenic 25.0%
! TAGTGGAGAAATATATTTAG+TGG + chr1.1:30867311-30867330 None:intergenic 25.0%
! TATACTTGTGAATAGAGTTA+CGG + chr1.1:30864707-30864726 None:intergenic 25.0%
! TTTATGATGAAAATACTCCA+AGG + chr1.1:30866236-30866255 None:intergenic 25.0%
!! AACTTTTATGTTTACACCAA+AGG - chr1.1:30866320-30866339 MS.gene000379:intron 25.0%
!! AATCAATCAATCTAAGGTAA+GGG + chr1.1:30867044-30867063 None:intergenic 25.0%
!! AGAAATTGATTCTTAATAGC+AGG - chr1.1:30863094-30863113 MS.gene000379:CDS 25.0%
!! CCAGTTTTCATTTCAAAATT+TGG - chr1.1:30866557-30866576 MS.gene000379:CDS 25.0%
!! TCATTCACATTTAAAGTTGA+GGG + chr1.1:30865795-30865814 None:intergenic 25.0%
!! TTTGACATGAATATCTTTTG+TGG + chr1.1:30866074-30866093 None:intergenic 25.0%
!! TTTGATGATTAGAGAAGTTA+GGG + chr1.1:30866950-30866969 None:intergenic 25.0%
!!! AAATGAAAACTGGTATTGAT+CGG + chr1.1:30866550-30866569 None:intergenic 25.0%
!!! AAGTATATGGTTCTGAAATA+GGG + chr1.1:30866998-30867017 None:intergenic 25.0%
!!! ACTTTCCATTCTTTTTTCAA+AGG + chr1.1:30864766-30864785 None:intergenic 25.0%
!!! CCAAATTTTGAAATGAAAAC+TGG + chr1.1:30866560-30866579 None:intergenic 25.0%
!!! TAAGTATATGGTTCTGAAAT+AGG + chr1.1:30866999-30867018 None:intergenic 25.0%
!!! TATTTTACATGATGGGAAAA+CGG + chr1.1:30865030-30865049 None:intergenic 25.0%
!!! TTTTGATGATTAGAGAAGTT+AGG + chr1.1:30866951-30866970 None:intergenic 25.0%
AGTGGGAGAAATATATTTAG+TGG + chr1.1:30867293-30867312 None:intergenic 30.0%
ATAGGAACAAATGTTAGTCA+TGG - chr1.1:30867877-30867896 MS.gene000379:CDS 30.0%
ATCCTTTATCACTGTTTGAT+TGG - chr1.1:30864342-30864361 MS.gene000379:intron 30.0%
ATGCTCTTGGTATATGTATT+TGG + chr1.1:30866808-30866827 None:intergenic 30.0%
ATGTAATTTCACCATTCTGA+AGG + chr1.1:30867822-30867841 None:intergenic 30.0%
ATTCAACCGAATGTTAGTAA+GGG - chr1.1:30864642-30864661 MS.gene000379:intron 30.0%
CATAAAGACACGTAACAAAA+AGG - chr1.1:30865284-30865303 MS.gene000379:intron 30.0%
CTAGTTGTAGTGATATGTTT+GGG + chr1.1:30866874-30866893 None:intergenic 30.0%
TAACTTCAAATATGTTGCAG+CGG - chr1.1:30865162-30865181 MS.gene000379:intron 30.0%
TAGGAACAAATGTTAGTCAT+GGG - chr1.1:30867878-30867897 MS.gene000379:CDS 30.0%
TAGGGTTTGAAAAGAAGTTA+GGG + chr1.1:30866932-30866951 None:intergenic 30.0%
TCTAGTTGTAGTGATATGTT+TGG + chr1.1:30866875-30866894 None:intergenic 30.0%
TGACAACTTAATTATGCATG+TGG - chr1.1:30865696-30865715 MS.gene000379:intron 30.0%
TGTAATTTCACCATTCTGAA+GGG + chr1.1:30867821-30867840 None:intergenic 30.0%
TTAGGGTTTGAAAAGAAGTT+AGG + chr1.1:30866933-30866952 None:intergenic 30.0%
TTCAAGACATACAAAGAAGT+CGG - chr1.1:30863742-30863761 MS.gene000379:intron 30.0%
! ATTGGTTTATAAAGCAAGGA+TGG + chr1.1:30864096-30864115 None:intergenic 30.0%
! CAATCAATCAATCTAAGGTA+AGG + chr1.1:30867045-30867064 None:intergenic 30.0%
! GCCCCTATTTTATTATTTAG+TGG + chr1.1:30867328-30867347 None:intergenic 30.0%
! GTCATTCACATTTAAAGTTG+AGG + chr1.1:30865796-30865815 None:intergenic 30.0%
! TTTTGCTTTGGCAAGATTTT+GGG + chr1.1:30867614-30867633 None:intergenic 30.0%
! TTTTTACCTTCTTCTTCTAC+AGG - chr1.1:30867661-30867680 MS.gene000379:intron 30.0%
!! ATTTTACATGATGGGAAAAC+GGG + chr1.1:30865029-30865048 None:intergenic 30.0%
!! CACATGTTTCTGTTTTGAAT+TGG + chr1.1:30866346-30866365 None:intergenic 30.0%
!! GTTATGTTGTTGTTGATTTG+TGG + chr1.1:30866751-30866770 None:intergenic 30.0%
!! TCGGATTTGTTATTCTTCAT+TGG - chr1.1:30863439-30863458 MS.gene000379:intron 30.0%
!! TGACATTGGTTTATAAAGCA+AGG + chr1.1:30864100-30864119 None:intergenic 30.0%
!!! AACTCGCAGTTTTTTGTTTT+AGG - chr1.1:30864833-30864852 MS.gene000379:intron 30.0%
!!! ACGGTTAGAGTTTTTTGTTT+TGG + chr1.1:30864145-30864164 None:intergenic 30.0%
!!! CGGTTAGAGTTTTTTGTTTT+GGG + chr1.1:30864144-30864163 None:intergenic 30.0%
!!! TAATTTTGTTAGCTTTCCAG+TGG + chr1.1:30866295-30866314 None:intergenic 30.0%
AACAACGTTTAAGAGAGACA+TGG - chr1.1:30863202-30863221 MS.gene000379:CDS 35.0%
AATAGAGTTACGGACATCAT+AGG + chr1.1:30864697-30864716 None:intergenic 35.0%
AATCATGTGCCTAAGAAGTT+GGG - chr1.1:30863825-30863844 MS.gene000379:intron 35.0%
AATCTTGCCAAAGCAAAACA+TGG - chr1.1:30867616-30867635 MS.gene000379:intron 35.0%
AGGAACAAATGTTAGTCATG+GGG - chr1.1:30867879-30867898 MS.gene000379:CDS 35.0%
AGGCAACATTCAAACAGAAA+GGG - chr1.1:30865420-30865439 MS.gene000379:intron 35.0%
ATACTGACACAAATTCGTGA+AGG - chr1.1:30862860-30862879 MS.gene000379:CDS 35.0%
ATATATGATGCTTCTTGCTC+AGG - chr1.1:30863024-30863043 MS.gene000379:CDS 35.0%
ATGATGAAAATACTCCAAGG+AGG + chr1.1:30866233-30866252 None:intergenic 35.0%
ATGCATCGTCATTAAAGTTG+AGG + chr1.1:30865840-30865859 None:intergenic 35.0%
ATGTCTCTCTTAAACGTTGT+TGG + chr1.1:30863203-30863222 None:intergenic 35.0%
ATTACGATATCGTACAACCA+CGG + chr1.1:30864531-30864550 None:intergenic 35.0%
CAAACAGTGATAAAGGATAG+TGG + chr1.1:30864340-30864359 None:intergenic 35.0%
CATACAAAGAGCTTCAAGAT+TGG - chr1.1:30862966-30862985 MS.gene000379:CDS 35.0%
CATTCAACCGAATGTTAGTA+AGG - chr1.1:30864641-30864660 MS.gene000379:intron 35.0%
CCTATACCCTTACTAACATT+CGG + chr1.1:30864651-30864670 None:intergenic 35.0%
CCTTAGATTGATTGATTGCA+AGG - chr1.1:30867047-30867066 MS.gene000379:intron 35.0%
CCTTGCAATCAATCAATCTA+AGG + chr1.1:30867050-30867069 None:intergenic 35.0%
CTCTAATACGTAACGAGATA+GGG + chr1.1:30865324-30865343 None:intergenic 35.0%
CTGAACTAAAGAAGAGAAAG+AGG - chr1.1:30867788-30867807 MS.gene000379:CDS 35.0%
GAAGAGAAAACTAGAGAAAG+AGG + chr1.1:30867119-30867138 None:intergenic 35.0%
GACCAATCAAACAGTGATAA+AGG + chr1.1:30864347-30864366 None:intergenic 35.0%
GGATTCATGATTATGAGTTG+TGG + chr1.1:30866726-30866745 None:intergenic 35.0%
GTTCTGCTGCTAATAACAAA+TGG - chr1.1:30864968-30864987 MS.gene000379:intron 35.0%
TAAACTTGACGTCTCATTAC+TGG - chr1.1:30863296-30863315 MS.gene000379:intron 35.0%
TAAATGCTACCCAACTTCTT+AGG + chr1.1:30863837-30863856 None:intergenic 35.0%
TAAGAAGTTGGGTAGCATTT+AGG - chr1.1:30863836-30863855 MS.gene000379:intron 35.0%
TAATCATGTGCCTAAGAAGT+TGG - chr1.1:30863824-30863843 MS.gene000379:intron 35.0%
TATTAGCAGCAGAACCAATA+CGG + chr1.1:30864963-30864982 None:intergenic 35.0%
TCAACTTTAATGACGATGCA+TGG - chr1.1:30865839-30865858 MS.gene000379:CDS 35.0%
TCAGAATTGGCATTTGGAAA+CGG + chr1.1:30867745-30867764 None:intergenic 35.0%
TCGACATCAAATTTGATTGC+AGG - chr1.1:30867688-30867707 MS.gene000379:intron 35.0%
TGATATCTTTCCAGTAGTCT+TGG + chr1.1:30866097-30866116 None:intergenic 35.0%
TGCAATCAAATTTGATGTCG+AGG + chr1.1:30867689-30867708 None:intergenic 35.0%
TGCATCGTCATTAAAGTTGA+GGG + chr1.1:30865839-30865858 None:intergenic 35.0%
TGTGTAATTTCTAATGCCGT+TGG + chr1.1:30866482-30866501 None:intergenic 35.0%
TTCTCTTCTTTCTCCAAAAC+AGG - chr1.1:30867131-30867150 MS.gene000379:intron 35.0%
TTTGAATGTTGCCTCTATGT+GGG + chr1.1:30865414-30865433 None:intergenic 35.0%
! AATCAATCTAAGGTAAGGGT+GGG + chr1.1:30867040-30867059 None:intergenic 35.0%
! GGTGAGGGAAATTTTGTAAT+AGG - chr1.1:30867859-30867878 MS.gene000379:CDS 35.0%
! GTTTTGCTTTGGCAAGATTT+TGG + chr1.1:30867615-30867634 None:intergenic 35.0%
! TAGGTTCACAATCTCCTTTT+TGG - chr1.1:30864615-30864634 MS.gene000379:intron 35.0%
! TATTACGTGCAAACCTGTTT+TGG + chr1.1:30867147-30867166 None:intergenic 35.0%
! TCTTTAAGCTCGAAGAGTTT+TGG + chr1.1:30862935-30862954 None:intergenic 35.0%
! TGTTGATGGACCATTTGAAA+TGG + chr1.1:30865259-30865278 None:intergenic 35.0%
!! AAGGGTATAGGTAGTTTTCT+AGG - chr1.1:30864660-30864679 MS.gene000379:intron 35.0%
!! CACACGTTTCTGTTTTGAAT+TGG + chr1.1:30866154-30866173 None:intergenic 35.0%
!! GTTTTGATCGTCAAAACTGA+TGG - chr1.1:30864444-30864463 MS.gene000379:intron 35.0%
!! TGTTGTTGTTGATTTGTGGT+TGG + chr1.1:30866747-30866766 None:intergenic 35.0%
!! TTTTACATGATGGGAAAACG+GGG + chr1.1:30865028-30865047 None:intergenic 35.0%
!!! ATTGGTTTTGGTGTCATTTG+TGG - chr1.1:30863863-30863882 MS.gene000379:intron 35.0%
!!! CATTTAGGTGTCATTGGTTT+TGG - chr1.1:30863851-30863870 MS.gene000379:intron 35.0%
!!! CCATTCTTTTTTCAAAGGAG+CGG + chr1.1:30864761-30864780 None:intergenic 35.0%
!!! GCAGTTTTTTGTTTTAGGTG+CGG - chr1.1:30864838-30864857 MS.gene000379:intron 35.0%
!!! TCATTTTGGAGTCAAACCAA+CGG - chr1.1:30866463-30866482 MS.gene000379:CDS 35.0%
!!! TTCTGTTTTGAATTGGCCTT+TGG + chr1.1:30866339-30866358 None:intergenic 35.0%
!!! TTTGGTGTCATTTGTGGTTT+TGG - chr1.1:30863869-30863888 MS.gene000379:intron 35.0%
AAGACATACAAAGAAGTCGG+TGG - chr1.1:30863745-30863764 MS.gene000379:intron 40.0%
AAGGAGCGGTGACATTAATA+CGG + chr1.1:30864747-30864766 None:intergenic 40.0%
AAGTGATAAGAGAGAGCAAG+AGG + chr1.1:30863471-30863490 None:intergenic 40.0%
AATAGAGGAGAGCAGAAACT+AGG + chr1.1:30864188-30864207 None:intergenic 40.0%
AATTCGTGAAGGTGAAAAGC+AGG - chr1.1:30862871-30862890 MS.gene000379:CDS 40.0%
AGCCTATGCTCTATAAGTTG+AGG + chr1.1:30865734-30865753 None:intergenic 40.0%
AGGAGACAACAGGAAAATAG+AGG + chr1.1:30864203-30864222 None:intergenic 40.0%
AGTGATAAGAGAGAGCAAGA+GGG + chr1.1:30863470-30863489 None:intergenic 40.0%
ATCGGTGCAGAATTGATCTT+AGG + chr1.1:30866532-30866551 None:intergenic 40.0%
ATCTTGAGACTCCTCAGAAT+TGG + chr1.1:30867758-30867777 None:intergenic 40.0%
ATGGTCAAATTACTGCACGT+AGG + chr1.1:30866426-30866445 None:intergenic 40.0%
ATTAGCAGCAGAACCAATAC+GGG + chr1.1:30864962-30864981 None:intergenic 40.0%
CACCACTAGTAGGAGAATTT+CGG + chr1.1:30867510-30867529 None:intergenic 40.0%
CAGCAATATTGAGGTGAGAA+GGG + chr1.1:30864260-30864279 None:intergenic 40.0%
CATAAGCACCATTACTGACA+CGG + chr1.1:30864789-30864808 None:intergenic 40.0%
GAACAAATGTTAGTCATGGG+GGG - chr1.1:30867881-30867900 MS.gene000379:CDS 40.0%
GAACACGAAAGTTGTAGGTA+TGG + chr1.1:30866506-30866525 None:intergenic 40.0%
GAGAAACCTAGAGAAGAGAA+AGG + chr1.1:30867097-30867116 None:intergenic 40.0%
GAGGCAACATTCAAACAGAA+AGG - chr1.1:30865419-30865438 MS.gene000379:intron 40.0%
GATTGTCAACAGCAAGCATA+CGG + chr1.1:30867558-30867577 None:intergenic 40.0%
GCTATGTAAGGTGCATATCA+TGG - chr1.1:30863922-30863941 MS.gene000379:intron 40.0%
GCTCTAATACGTAACGAGAT+AGG + chr1.1:30865325-30865344 None:intergenic 40.0%
GGAACAAATGTTAGTCATGG+GGG - chr1.1:30867880-30867899 MS.gene000379:CDS 40.0%
GTGAATGACTAAGCATTCCA+GGG - chr1.1:30865763-30865782 MS.gene000379:intron 40.0%
GTGGTTGTACGATATCGTAA+TGG - chr1.1:30864530-30864549 MS.gene000379:intron 40.0%
GTTTCCAAATGCCAATTCTG+AGG - chr1.1:30867744-30867763 MS.gene000379:CDS 40.0%
GTTTGAATGTTGCCTCTATG+TGG + chr1.1:30865415-30865434 None:intergenic 40.0%
TCATGTCAAACCAAGACTAC+TGG - chr1.1:30866084-30866103 MS.gene000379:intron 40.0%
TGGAAGTAAGGAAACATGGA+AGG + chr1.1:30864223-30864242 None:intergenic 40.0%
TGTGAATGACTAAGCATTCC+AGG - chr1.1:30865806-30865825 MS.gene000379:CDS 40.0%
TTATGTCAAACCAAAGCCAC+TGG - chr1.1:30866276-30866295 MS.gene000379:intron 40.0%
! ACATCATTTGCTGCTGATGT+GGG - chr1.1:30867838-30867857 MS.gene000379:CDS 40.0%
! CAATCAATCTAAGGTAAGGG+TGG + chr1.1:30867041-30867060 None:intergenic 40.0%
! CCGAATGTTAGTAAGGGTAT+AGG - chr1.1:30864648-30864667 MS.gene000379:intron 40.0%
! CCGCTCCTTTGAAAAAAGAA+TGG - chr1.1:30864758-30864777 MS.gene000379:intron 40.0%
! CTATAAGTTGAGGGCTTGAT+TGG + chr1.1:30865724-30865743 None:intergenic 40.0%
! GCCTATGCTCTATAAGTTGA+GGG + chr1.1:30865733-30865752 None:intergenic 40.0%
! TACATCATTTGCTGCTGATG+TGG - chr1.1:30867837-30867856 MS.gene000379:CDS 40.0%
!! AATGAAGCTTTGGGCAGAAT+TGG + chr1.1:30867232-30867251 None:intergenic 40.0%
!! ATTCTGGGATGATTACCTCT+TGG - chr1.1:30864029-30864048 MS.gene000379:intron 40.0%
!! GATGGAAGCATCTAGATCAT+AGG + chr1.1:30864078-30864097 None:intergenic 40.0%
!! TTCACTTTTATTCCCACCAC+TGG + chr1.1:30863052-30863071 None:intergenic 40.0%
!!! GATAGTGGATGTTTTCGACT+CGG + chr1.1:30864325-30864344 None:intergenic 40.0%
ACACACAGACAAAGTTTGCC+CGG - chr1.1:30864870-30864889 MS.gene000379:intron 45.0%
ACCTGAACCATTTGGACATC+TGG - chr1.1:30864589-30864608 MS.gene000379:intron 45.0%
ACGCAGACTGTTGTTGACAT+TGG + chr1.1:30864114-30864133 None:intergenic 45.0%
ACTCCAACTCGAACAAATCC+GGG + chr1.1:30864891-30864910 None:intergenic 45.0%
ATTCTGGTGGAGAAAACCCT+AGG + chr1.1:30863975-30863994 None:intergenic 45.0%
CAAACGCAGACTGTGTTTCA+CGG + chr1.1:30864164-30864183 None:intergenic 45.0%
CAATTTCGCTAAGACCTCCT+TGG - chr1.1:30866216-30866235 MS.gene000379:intron 45.0%
CAGCATTAGGCTTCAAGTCA+GGG + chr1.1:30864939-30864958 None:intergenic 45.0%
CATGGAATTGGCTGGAAGTA+AGG + chr1.1:30864235-30864254 None:intergenic 45.0%
CCAATTGCGAACACCATCAT+CGG + chr1.1:30864914-30864933 None:intergenic 45.0%
CCAGCAATATTGAGGTGAGA+AGG + chr1.1:30864261-30864280 None:intergenic 45.0%
CCTGAACCATTTGGACATCT+GGG - chr1.1:30864590-30864609 MS.gene000379:intron 45.0%
CCTTCTCACCTCAATATTGC+TGG - chr1.1:30864258-30864277 MS.gene000379:intron 45.0%
CTAGATCATAGGACCAGATG+AGG + chr1.1:30864067-30864086 None:intergenic 45.0%
CTTACTTCCAGCCAATTCCA+TGG - chr1.1:30864233-30864252 MS.gene000379:intron 45.0%
GAAACATGGAAGGAGACAAC+AGG + chr1.1:30864213-30864232 None:intergenic 45.0%
GACTCCAACTCGAACAAATC+CGG + chr1.1:30864892-30864911 None:intergenic 45.0%
GACTCCTCAGAATTGGCATT+TGG + chr1.1:30867751-30867770 None:intergenic 45.0%
GAGGTAATCATCCCAGAATG+CGG + chr1.1:30864028-30864047 None:intergenic 45.0%
GATGTCCGTATTCTCAACGA+CGG - chr1.1:30864504-30864523 MS.gene000379:intron 45.0%
GCCCTCAACTTATAGAGCAT+AGG - chr1.1:30865729-30865748 MS.gene000379:intron 45.0%
GGTGAATGACTAAGCATTCC+AGG - chr1.1:30865762-30865781 MS.gene000379:intron 45.0%
GGTGTGAACACGAAAGTTGT+AGG + chr1.1:30866511-30866530 None:intergenic 45.0%
GGTTAAGCCTTCTTCAGCAA+GGG + chr1.1:30864289-30864308 None:intergenic 45.0%
GTCGATGTCGTTGAAGTTGT+TGG + chr1.1:30865888-30865907 None:intergenic 45.0%
GTCTGACCTTTCTCTTCTCT+AGG - chr1.1:30867088-30867107 MS.gene000379:intron 45.0%
GTTGTTGGATGTGCACAACA+AGG + chr1.1:30863188-30863207 None:intergenic 45.0%
TCGGTTGAATGCAGCCAAAA+AGG + chr1.1:30864632-30864651 None:intergenic 45.0%
TCTCAGTACATACGCTCCTA+GGG - chr1.1:30863956-30863975 MS.gene000379:intron 45.0%
TGCCAAAGCAAAACATGGCT+CGG - chr1.1:30867621-30867640 MS.gene000379:intron 45.0%
TGCCGAAATTCTCCTACTAG+TGG - chr1.1:30867505-30867524 MS.gene000379:intron 45.0%
TGGAAAGTCCGTGTCAGTAA+TGG - chr1.1:30864778-30864797 MS.gene000379:intron 45.0%
TGGCTGGAAGTAAGGAAACA+TGG + chr1.1:30864227-30864246 None:intergenic 45.0%
TTCTCAGTACATACGCTCCT+AGG - chr1.1:30863955-30863974 MS.gene000379:intron 45.0%
! ATCCGAGCCATGTTTTGCTT+TGG + chr1.1:30867626-30867645 None:intergenic 45.0%
! CAAGATTTTGGGCAGCAAGT+AGG + chr1.1:30867603-30867622 None:intergenic 45.0%
! CAGGTAATCGAAGCACCAAA+GGG + chr1.1:30867717-30867736 None:intergenic 45.0%
! CGATGATGGTGTTCGCAATT+GGG - chr1.1:30864912-30864931 MS.gene000379:intron 45.0%
! GAGGTACCTGTAGAAGAAGA+AGG + chr1.1:30867670-30867689 None:intergenic 45.0%
! GATGATGGTGTTCGCAATTG+GGG - chr1.1:30864913-30864932 MS.gene000379:intron 45.0%
! GGGTAGCATTTAGGTGTCAT+TGG - chr1.1:30863845-30863864 MS.gene000379:intron 45.0%
! TTAGGTTGTTGCCGCATTCT+GGG - chr1.1:30864014-30864033 MS.gene000379:intron 45.0%
!! TGTTAGCTTTCCAGTGGCTT+TGG + chr1.1:30866289-30866308 None:intergenic 45.0%
!! TGTTTTAGGTGCGGTTTGCT+TGG - chr1.1:30864847-30864866 MS.gene000379:intron 45.0%
!! AAAAAAAATTAAAAATTGAA+AGG + chr1.1:30863568-30863587 None:intergenic 5.0%
!!! TAAATTCTTTTTTTTATTAA+AGG + chr1.1:30863722-30863741 None:intergenic 5.0%
AAAGTTGAGGGCTTATGCCC+TGG + chr1.1:30865783-30865802 None:intergenic 50.0%
AACAACCTAAGAGAGGGTGG+CGG + chr1.1:30864004-30864023 None:intergenic 50.0%
AACCCTAAGACGACGTGTGA+GGG - chr1.1:30865345-30865364 MS.gene000379:intron 50.0%
AAGCAGGAGATACACCAGCA+GGG + chr1.1:30867486-30867505 None:intergenic 50.0%
AAGCCTAATGCTGCCCGTAT+TGG - chr1.1:30864946-30864965 MS.gene000379:intron 50.0%
AATAGGCAGCCTGAATCTCG+CGG + chr1.1:30864383-30864402 None:intergenic 50.0%
ACGATCAAAACACGCTTGCC+TGG + chr1.1:30864435-30864454 None:intergenic 50.0%
ACGGACCGTCGTTGAGAATA+CGG + chr1.1:30864512-30864531 None:intergenic 50.0%
AGCCATACGCTCGCTGAAAT+AGG + chr1.1:30864400-30864419 None:intergenic 50.0%
AGCCTTCTTCAGCAAGGGTA+AGG + chr1.1:30864284-30864303 None:intergenic 50.0%
AGGATCAACTGCTCACCAAG+AGG + chr1.1:30864047-30864066 None:intergenic 50.0%
AGGATGCTGACCCTTCAGAA+TGG - chr1.1:30867808-30867827 MS.gene000379:CDS 50.0%
ATGCGGCAACAACCTAAGAG+AGG + chr1.1:30864011-30864030 None:intergenic 50.0%
ATTGAGGTGAGAAGGGTCCA+TGG + chr1.1:30864253-30864272 None:intergenic 50.0%
CAAATGGTTCAGGTCGACAG+AGG + chr1.1:30864583-30864602 None:intergenic 50.0%
CATACAAAGAAGTCGGTGGC+TGG - chr1.1:30863749-30863768 MS.gene000379:intron 50.0%
CCATTTGGACATCTGGGTCT+AGG - chr1.1:30864596-30864615 MS.gene000379:intron 50.0%
CCCAGATGTCCAAATGGTTC+AGG + chr1.1:30864593-30864612 None:intergenic 50.0%
CCTAGACCCAGATGTCCAAA+TGG + chr1.1:30864599-30864618 None:intergenic 50.0%
CTCACATCAACAGCTGATCC+TGG - chr1.1:30865374-30865393 MS.gene000379:intron 50.0%
CTCTGTCGACCTGAACCATT+TGG - chr1.1:30864581-30864600 MS.gene000379:intron 50.0%
GAACCAATACGGGCAGCATT+AGG + chr1.1:30864952-30864971 None:intergenic 50.0%
GAGGAGTCTCAAGATGCTAC+TGG - chr1.1:30867763-30867782 MS.gene000379:CDS 50.0%
GCAGCATTAGGCTTCAAGTC+AGG + chr1.1:30864940-30864959 None:intergenic 50.0%
GGGTAAGGCCAGCAATATTG+AGG + chr1.1:30864269-30864288 None:intergenic 50.0%
GGGTTAAGCCTTCTTCAGCA+AGG + chr1.1:30864290-30864309 None:intergenic 50.0%
GTAGGAGAATTTCGGCAAGC+AGG + chr1.1:30867502-30867521 None:intergenic 50.0%
GTGAGAAGGGTCCATGGAAT+TGG + chr1.1:30864247-30864266 None:intergenic 50.0%
GTGAGCAGTTGATCCTCATC+TGG - chr1.1:30864051-30864070 MS.gene000379:intron 50.0%
TAGAGCATAGGCTCTCAACG+TGG - chr1.1:30865741-30865760 MS.gene000379:intron 50.0%
TCTGCACGTTACCCACATAG+AGG - chr1.1:30865400-30865419 MS.gene000379:intron 50.0%
TGCCTATTTCAGCGAGCGTA+TGG - chr1.1:30864395-30864414 MS.gene000379:intron 50.0%
TGCGGCAACAACCTAAGAGA+GGG + chr1.1:30864010-30864029 None:intergenic 50.0%
TGGGTAACGTGCAGATAACC+AGG + chr1.1:30865395-30865414 None:intergenic 50.0%
TTTGCTGCTGATGTGGGTGA+GGG - chr1.1:30867844-30867863 MS.gene000379:CDS 50.0%
! ATTTGCTGCTGATGTGGGTG+AGG - chr1.1:30867843-30867862 MS.gene000379:CDS 50.0%
! CCGATGATGGTGTTCGCAAT+TGG - chr1.1:30864911-30864930 MS.gene000379:intron 50.0%
! CTTAGGTTGTTGCCGCATTC+TGG - chr1.1:30864013-30864032 MS.gene000379:intron 50.0%
! GCAGGTAATCGAAGCACCAA+AGG + chr1.1:30867718-30867737 None:intergenic 50.0%
! GCATTGACAGCACCACTAGT+AGG + chr1.1:30867520-30867539 None:intergenic 50.0%
! GTAATCGAAGCACCAAAGGG+CGG + chr1.1:30867714-30867733 None:intergenic 50.0%
! TTGCCCGGATTTGTTCGAGT+TGG - chr1.1:30864885-30864904 MS.gene000379:intron 50.0%
! TTGGTGCTTCGATTACCTGC+TGG - chr1.1:30867718-30867737 MS.gene000379:CDS 50.0%
!! GTAATGGATCGCATCCAACC+TGG - chr1.1:30864546-30864565 MS.gene000379:intron 50.0%
!! TTCGAGTTGGAGTCCGATGA+TGG - chr1.1:30864898-30864917 MS.gene000379:intron 50.0%
!!! AGTGGATGTTTTCGACTCGG+TGG + chr1.1:30864322-30864341 None:intergenic 50.0%
!!! ATGTTTTCGACTCGGTGGCT+AGG + chr1.1:30864317-30864336 None:intergenic 50.0%
ACAGAGGTAGGGACAACACC+AGG + chr1.1:30864567-30864586 None:intergenic 55.0%
ACTCCCTCACACGTCGTCTT+AGG + chr1.1:30865351-30865370 None:intergenic 55.0%
AGGTAGGGACAACACCAGGT+TGG + chr1.1:30864563-30864582 None:intergenic 55.0%
ATACACCAGCAGGGACATGG+TGG + chr1.1:30867477-30867496 None:intergenic 55.0%
ATGGCTCGTGCTTAGAAGCC+AGG - chr1.1:30864414-30864433 MS.gene000379:intron 55.0%
CAACCCTAAGACGACGTGTG+AGG - chr1.1:30865344-30865363 MS.gene000379:intron 55.0%
CAAGCAGGAGATACACCAGC+AGG + chr1.1:30867487-30867506 None:intergenic 55.0%
CTCCCTCACACGTCGTCTTA+GGG + chr1.1:30865350-30865369 None:intergenic 55.0%
CTTGCTCAGGAACCAGTGGT+GGG - chr1.1:30863037-30863056 MS.gene000379:CDS 55.0%
GAAGGGTCCATGGAATTGGC+TGG + chr1.1:30864243-30864262 None:intergenic 55.0%
GAGATACACCAGCAGGGACA+TGG + chr1.1:30867480-30867499 None:intergenic 55.0%
GCATTTGGAAACGGTCCAGC+AGG + chr1.1:30867736-30867755 None:intergenic 55.0%
GCTTCTTGCTCAGGAACCAG+TGG - chr1.1:30863033-30863052 MS.gene000379:CDS 55.0%
GGCAACAACCTAAGAGAGGG+TGG + chr1.1:30864007-30864026 None:intergenic 55.0%
GGCCTTACCCTTGCTGAAGA+AGG - chr1.1:30864279-30864298 MS.gene000379:intron 55.0%
GGTTCAGGTCGACAGAGGTA+GGG + chr1.1:30864578-30864597 None:intergenic 55.0%
GTATTCTCAACGACGGTCCG+TGG - chr1.1:30864511-30864530 MS.gene000379:intron 55.0%
GTGGCGGCTAGAAATTCTGG+TGG + chr1.1:30863988-30864007 None:intergenic 55.0%
TCTTGCTCAGGAACCAGTGG+TGG - chr1.1:30863036-30863055 MS.gene000379:CDS 55.0%
TGGTTCAGGTCGACAGAGGT+AGG + chr1.1:30864579-30864598 None:intergenic 55.0%
TTTGATTGCAGGCCGCCCTT+TGG - chr1.1:30867699-30867718 MS.gene000379:CDS 55.0%
! AGGGTGGCGGCTAGAAATTC+TGG + chr1.1:30863991-30864010 None:intergenic 55.0%
! GGGGTGTTACACACAGCAGA+AGG + chr1.1:30865009-30865028 None:intergenic 55.0%
!! CGACTCGGTGGCTAGGTTAA+GGG + chr1.1:30864310-30864329 None:intergenic 55.0%
!! TCGACTCGGTGGCTAGGTTA+AGG + chr1.1:30864311-30864330 None:intergenic 55.0%
CCTAGCTGACCGCGAGATTC+AGG - chr1.1:30864371-30864390 MS.gene000379:intron 60.0%
CCTGAATCTCGCGGTCAGCT+AGG + chr1.1:30864374-30864393 None:intergenic 60.0%
TCTAGCCGCCACCCTCTCTT+AGG - chr1.1:30863996-30864015 MS.gene000379:intron 60.0%
! CCAGCAGGGACATGGTGGCG+CGG + chr1.1:30867472-30867491 None:intergenic 70.0%
CCGCGCCACCATGTCCCTGC+TGG - chr1.1:30867469-30867488 MS.gene000379:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 30862830 30867915 30862830 ID=MS.gene000379
chr1.1 mRNA 30862830 30867915 30862830 ID=MS.gene000379.t1;Parent=MS.gene000379
chr1.1 exon 30867691 30867915 30867691 ID=MS.gene000379.t1.exon1;Parent=MS.gene000379.t1
chr1.1 CDS 30867691 30867915 30867691 ID=cds.MS.gene000379.t1;Parent=MS.gene000379.t1
chr1.1 exon 30866334 30866658 30866334 ID=MS.gene000379.t1.exon2;Parent=MS.gene000379.t1
chr1.1 CDS 30866334 30866658 30866334 ID=cds.MS.gene000379.t1;Parent=MS.gene000379.t1
chr1.1 exon 30865778 30865867 30865778 ID=MS.gene000379.t1.exon3;Parent=MS.gene000379.t1
chr1.1 CDS 30865778 30865867 30865778 ID=cds.MS.gene000379.t1;Parent=MS.gene000379.t1
chr1.1 exon 30862830 30863290 30862830 ID=MS.gene000379.t1.exon4;Parent=MS.gene000379.t1
chr1.1 CDS 30862830 30863290 30862830 ID=cds.MS.gene000379.t1;Parent=MS.gene000379.t1
Gene Sequence

>MS.gene000379

ATGGAAAAATTAAATCTAGAACTTGATGAGATACTGACACAAATTCGTGAAGGTGAAAAGCAGGTCGAGACTCATGATGAGATTCTGAAGCAAAATGATGTGCCAAAACTCTTCGAGCTTAAAGAATTAAGAGATTCATACAAAGAGCTTCAAGATTGGTTCAAATTACGTCTTAGTGATATTGAAATATCAAAATATATGATGCTTCTTGCTCAGGAACCAGTGGTGGGAATAAAAGTGAAATATGCAAATAGGAAAAGAAGAAGAAATTGATTCTTAATAGCAGGAAAGCTATTTTAATTTAATATATTTTCTACTTTTCTATGAATAGTTTATGTTCTCATGTCTCTCTAAGCCTTGTTGTGCACATCCAACAACGTTTAAGAGAGACATGGAAGAAAATAGTACTAATAGTGAATAAAGTGTTTGCTTTTGTCATTCATATTTTTATTAGTAGAAATGAATTTAAACTTGACGTCTCATTACTGGTTTGTAATAAGTTGTGTCGAATAATTAAATATGGGATAAAATCTTAATTTAAATATAGAAAAAACAAGTTGTGGAACATATTTTTGTGTAAAAGTGGAATGTCAATTTGTATGAAAATCATCGGATTTGTTATTCTTCATTGGCACTTCCCTCTTGCTCTCTCTTATCACTTATTTCATTGCTTGTTTTTTATCAGTTGATTTTAATTTGGTAAATTTTTTAATTGTAGATTCTCGACTAGTGTATCCTTTCAATTTTTAATTTTTTTTTATTAAAAAATATACATTTTTATTGCAGATATCTTTTAGAAATAAAATAAATATTTATCGTAATTTTTTTAATTATAAGCTAATTATAGTAATTTGAAAAAGTAAAAATTTTAATTGTAATTTTTTCCATTCCTTTAATAAAAAAAAGAATTTATTCAAGACATACAAAGAAGTCGGTGGCTGGCTGATTATTCAAATTTACCATAAAAAATATATATACACACACACATAAAGTTTAATCATGTGCCTAAGAAGTTGGGTAGCATTTAGGTGTCATTGGTTTTGGTGTCATTTGTGGTTTTGGTTTTTAATTGATTATAATTATAATCATTAAGCTATGTAAGGTGCATATCATGGAGAATGTGTATTCTCAGTACATACGCTCCTAGGGTTTTCTCCACCAGAATTTCTAGCCGCCACCCTCTCTTAGGTTGTTGCCGCATTCTGGGATGATTACCTCTTGGTGAGCAGTTGATCCTCATCTGGTCCTATGATCTAGATGCTTCCATCCTTGCTTTATAAACCAATGTCAACAACAGTCTGCGTCATGCTTCCCAAAACAAAAAACTCTAACCGTGAAACACAGTCTGCGTTTGACCTAGTTTCTGCTCTCCTCTATTTTCCTGTTGTCTCCTTCCATGTTTCCTTACTTCCAGCCAATTCCATGGACCCTTCTCACCTCAATATTGCTGGCCTTACCCTTGCTGAAGAAGGCTTAACCCTTAACCTAGCCACCGAGTCGAAAACATCCACTATCCTTTATCACTGTTTGATTGGTCGTGTCCTAGCTGACCGCGAGATTCAGGCTGCCTATTTCAGCGAGCGTATGGCTCGTGCTTAGAAGCCAGGCAAGCGTGTTTTGATCGTCAAAACTGATGGTGATCGCTTTCTATTTCAGTTTCATCACAAAATGGATGATGTCCGTATTCTCAACGACGGTCCGTGGTTGTACGATATCGTAATGGATCGCATCCAACCTGGTGTTGTCCCTACCTCTGTCGACCTGAACCATTTGGACATCTGGGTCTAGGTTCACAATCTCCTTTTTGGCTGCATTCAACCGAATGTTAGTAAGGGTATAGGTAGTTTTCTAGGTGAACTCAAATCCTATGATGTCCGTAACTCTATTCACAAGTATATATATGCGTCTAAAAGTCCGTATTAATGTCACCGCTCCTTTGAAAAAAGAATGGAAAGTCCGTGTCAGTAATGGTGCTTATGTTACAGTTAAATTTAAATATGAGAAACTCGCAGTTTTTTGTTTTAGGTGCGGTTTGCTTGGACACACAGACAAAGTTTGCCCGGATTTGTTCGAGTTGGAGTCCGATGATGGTGTTCGCAATTGGGGCCCTGACTTGAAGCCTAATGCTGCCCGTATTGGTTCTGCTGCTAATAACAAATGGTTGCAAGACTCAATACCTTCTGCTGTGTGTAACACCCCGTTTTCCCATCATGTAAAATAATACATAATAATCAGAGTATTCGACTTAAAACATGATGTCACATTTCTTTAAAATATCCTCAAATATAAATAGAGTTAAAATCTACTCTTTATTTAAAACAACTACTGTCAATAACTTCAAATATGTTGCAGCGGAAAAATTCTTAAATGTTAAACAAATACTCGGAACTACATGCCTCAACATCATAAACAACTTATTAAACAATCCATTTCAAATGGTCCATCAACATAAATCATAAAGACACGTAACAAAAAGGAAACAAAGCAAGATCCCTATCTCGTTACGTATTAGAGCAACCCTAAGACGACGTGTGAGGGAGTCAACTCACATCAACAGCTGATCCTGGTTATCTGCACGTTACCCACATAGAGGCAACATTCAAACAGAAAGGGTGAGATTCACATTTAATAATAATAAGCATATAATTCATCAACAGAATTTAACAACATAAATATCAACAATTATAACAATGTTAAACAACAATTATACAACGTAAATAATTCTCATAATTGCCCATTATCAAATCATTAAATATAATAACAACTTGACAACACGACAACAACATCGACAACTCTACATCAACGACAACTTAGCATCAACGACAACTTAACTTCAACGACAAATGCAACGACAACTTCATCAACTTGACAACTTAATTATGCATGTGGTACCAATCAAGCCCTCAACTTATAGAGCATAGGCTCTCAACGTGGTGAATGACTAAGCATTCCAGGGCATAAGCCCTCAACTTTAAATGTGAATGACTAAGCATTCCAGGGCATAAGCCCTCAACTTTAATGACGATGCATGGACTCAACAACAATGCAACGACAACCAACAACTTCAACGACATCGACAACAACTTACAACTTTAACTACATTGACGACAACAACGACAACGACAACAACGACATCTTTGCATTATAATATCATAATTCATCAATCATAAACAGCATCATATAACATCGTATTAAACAACAACAATTCATCATACATCTTCGTAAAAACATATTAAATTATCCACAAAAGATATTCATGTCAAACCAAGACTACTGGAAAGATATCACATTTATCAACAACTTTCATGTTTATATCAAAGACCAATTCAAAACAGAAACGTGTGAAACAGACGCAAAAACATGAAACAGAGAATGCTGTCACTGTGCAATTTCGCTAAGACCTCCTTGGAGTATTTTCATCATAAATCCAAAACCAAAAATCATTTTTATGTCAAACCAAAGCCACTGGAAAGCTAACAAAATTATTTAAAACTTTTATGTTTACACCAAAGGCCAATTCAAAACAGAAACATGTGAAAAAAAACGCAAAAACATGAAACAGAGAATGTTGTCACTGTGCAATTTTGCTGTGACCTACGTGCAGTAATTTGACCATAACTCAAGTTCTATAAATCATTTTGGAGTCAAACCAACGGCATTAGAAATTACACATCCATACCTACAACTTTCGTGTTCACACCTAAGATCAATTCTGCACCGATCAATACCAGTTTTCATTTCAAAATTTGGGGCAGAGATGAAAAAAATCAGAAAAAGCAACTTATATTATTCAAACTTCACATTCATTCAAAATCATCACAATCAACAACAACAACTCAACATAATTCATACCTAATTCATAATATGACATTAAGAACAACAATCATCAACAACCACAACTCATAATCATGAATCCAACCACAAATCAACAACAACATAACATAAATCATCAATTGAGCATAATTCATCAAGTATCCAAATACATATACCAAGAGCATGCAATTTCATCATCAACAATTCATTTATCAATAAATTAACATACCCAAACATATCACTACAACTAGAGCACGAATTTCATCAATTAAATTGCAATTCAAAACCCTAACTTCTTTTCAAACCCTAACTTCTCTAATCATCAAAATAAAACAACAACAAACATGTTAAACCCTATTTCAGAACCATATACTTATGATTAAAGAAGGTTAGTCCCACCCTTACCTTAGATTGATTGATTGCAAGGATTCTACAGACTTCTCTTGTCTGACCTTTCTCTTCTCTAGGTTTCTCCTCTTTCTCTAGTTTTCTCTTCTTTCTCCAAAACAGGTTTGCACGTAATATAATTTTCTAACTCTAGCTCTCCTTTTTATATAAACCTTAACCTATTAATTTTCTCTTAATTCCAATTCTGCCCAAAGCTTCATTATTCTAAATAATTATATTTCTCCACTAAATATATTCTTCCACTAAATATATTTCTCCCACTAAATATATTTCTCCACTAAATAATAAAATAGGGGCTACTAATAAATATTAACACACAACAAAAATATCACTTATCAAATATATTAATTAATTTATATAAGAAAAGACTCTAAACTCAAACAAATAAATAAATAATAAAATAGGGCGTTACACTGTGCCGCGCCACCATGTCCCTGCTGGTGTATCTCCTGCTTGCCGAAATTCTCCTACTAGTGGTGCTGTCAATGCTGTAACTTTTAGTGACCGTATGCTTGCTGTTGACAATCAGATTTCTGCTCTCAAATATGACCTACTTGCTGCCCAAAATCTTGCCAAAGCAAAACATGGCTCGGATGCTTGTCAGATACAATTTTTACCTTCTTCTTCTACAGGTACCTCGACATCAAATTTGATTGCAGGCCGCCCTTTGGTGCTTCGATTACCTGCTGGACCGTTTCCAAATGCCAATTCTGAGGAGTCTCAAGATGCTACTGGTTCTGAACTAAAGAAGAGAAAGAGGATGCTGACCCTTCAGAATGGTGAAATTACATCATTTGCTGCTGATGTGGGTGAGGGAAATTTTGTAATAGGAACAAATGTTAGTCATGGGGGGATGTTGATATGA
Protein sequence

>MS.gene000379.t1

MEKLNLELDEILTQIREGEKQVETHDEILKQNDVPKLFELKELRDSYKELQDWFKLRLSDIEISKYMMLLAQEPVMLPSLLYKPMSTTVCVMLPKTKNSNRETQSAFDLVSALLYFPVVSFHVSLLPANSMDPSHLNIAGLTLAEEGLTLNLATESKTSTILYHCLIGRVLADREIQAAYFSEHKVCPDLFELESDDGVRNWGPDLKPNAARIGRYTVPRHHVPAGVSPACRNSPTSGAVNAVTFSDRMLAVDNQISALKYDLLAAQNLAKAKHGSDACQIQFLPSSSTGTSTSNLIAGRPLVLRLPAGPFPNANSEESQDATGSELKKRKRMLTLQNGEITSFAADVGEGNFVIGTNVSHGGMLI