AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018474

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018474.t1 MTR_3g053920 40.000 250 83 3 1 250 83 265 2.79e-49 168
MS.gene018474.t1 MTR_4g103530 72.308 65 18 0 1 65 29 93 1.02e-28 111
MS.gene018474.t1 MTR_2g061500 68.085 47 15 0 1 47 83 129 1.35e-18 82.0
MS.gene018474.t1 MTR_7g011710 63.158 57 21 0 1 57 29 85 1.71e-18 82.4
MS.gene018474.t1 MTR_6g033215 33.051 118 77 1 2 117 177 294 2.28e-18 85.1
MS.gene018474.t1 MTR_0010s0370 35.714 98 59 2 1 95 81 177 5.96e-17 79.0
MS.gene018474.t1 MTR_0010s0350 35.714 98 59 2 1 95 81 177 5.96e-17 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018474.t1 AT3G31430 36.641 131 75 4 6 133 186 311 3.97e-16 79.3
MS.gene018474.t1 AT5G36228 31.333 150 96 3 1 145 86 233 1.01e-14 75.5
MS.gene018474.t1 AT3G57587 28.676 136 93 2 1 134 86 219 2.46e-14 74.3
MS.gene018474.t1 AT2G17920 28.676 136 93 2 1 134 86 219 5.56e-14 72.4
MS.gene018474.t1 AT2G41590 28.676 136 93 2 1 134 86 219 1.12e-13 72.4
MS.gene018474.t1 AT5G18636 28.676 136 93 2 1 134 86 219 3.01e-12 67.8
MS.gene018474.t1 AT5G25200 28.676 136 93 2 1 134 86 219 3.27e-12 67.8
MS.gene018474.t1 AT2G02103 28.676 136 93 2 1 134 86 219 1.19e-11 66.2

Find 91 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCTGTTGATGGGGTTAT+TGG 0.178603 6.2:+49018148 MS.gene018474:CDS
TTGCTGTTGATGGGGTTATT+GGG 0.222024 6.2:+49018149 MS.gene018474:CDS
CAGTTTCTTTATGCGGTTAA+AGG 0.234429 6.2:+49017421 MS.gene018474:CDS
TGCTATAGGTGTGGCCTTCT+CGG 0.279598 6.2:+49017548 MS.gene018474:CDS
CAAGTCCATGGTTTACCTTT+TGG 0.306585 6.2:+49017317 MS.gene018474:CDS
CCGAGAACTGATAATGCTTT+TGG 0.315087 6.2:+49017719 MS.gene018474:CDS
TGCCTTGACCAACCCTTTGT+TGG 0.379167 6.2:-49017346 None:intergenic
CTCGGCACAGCAGATGGTAT+AGG 0.404723 6.2:-49017701 None:intergenic
CCAAAAGCATTATCAGTTCT+CGG 0.406482 6.2:-49017719 None:intergenic
TAACCTCAGCACAGCAGGTT+TGG 0.419441 6.2:-49017972 None:intergenic
ATTGAGCCGGCCACCTAGAT+TGG 0.421384 6.2:-49017795 None:intergenic
TCACTTTAAGTACGAGAAGC+TGG 0.423892 6.2:+49017517 MS.gene018474:CDS
ACAGCACGTTGCACAGTACC+AGG 0.430827 6.2:-49017266 None:intergenic
CTCAGCCCTTGCACCATCTG+TGG 0.433292 6.2:-49018005 None:intergenic
CAAGGCATTGGTCAATTCCT+TGG 0.446754 6.2:+49017362 MS.gene018474:CDS
GCACCATCTGTGGGAGCCGC+AGG 0.459076 6.2:-49017995 None:intergenic
TGCTGTTGATGGGGTTATTG+GGG 0.463416 6.2:+49018150 MS.gene018474:CDS
AATGTGAATATTTCCAATCT+AGG 0.481584 6.2:+49017782 MS.gene018474:CDS
TCAGCCCTTGCACCATCTGT+GGG 0.483339 6.2:-49018004 None:intergenic
GTATTCTGAACCAGGTTTCA+AGG 0.485141 6.2:+49019043 MS.gene018474:CDS
CGGCTCCCACAGATGGTGCA+AGG 0.491319 6.2:+49017999 MS.gene018474:CDS
GATGACGGTGTCCGAGAGTT+GGG 0.497583 6.2:+49017614 MS.gene018474:CDS
TCGGCACAGCAGATGGTATA+GGG 0.499852 6.2:-49017700 None:intergenic
TTACCTGCGGCTCCCACAGA+TGG 0.503412 6.2:+49017992 MS.gene018474:CDS
AGTAATAGCCTTACCACTCT+TGG 0.507441 6.2:-49017882 None:intergenic
GAATCCAACTCAAATAGATC+AGG 0.508776 6.2:-49017590 None:intergenic
GAAGCGGAAGCGTATGTTGG+CGG 0.508791 6.2:+49018081 MS.gene018474:CDS
GTCTTGCAACCATCTGTTAG+TGG 0.509625 6.2:-49017678 None:intergenic
ATGTCCTGATCTATTTGAGT+TGG 0.514808 6.2:+49017586 MS.gene018474:CDS
CACTTTAAGTACGAGAAGCT+GGG 0.517396 6.2:+49017518 MS.gene018474:CDS
GAGATTAATTCAATCAAGAA+TGG 0.518440 6.2:+49017830 MS.gene018474:CDS
TGGACCTTCATCGAGCACTT+TGG 0.525123 6.2:-49017201 None:intergenic
GCAGGTAACCTCAGCACAGC+AGG 0.526378 6.2:-49017977 None:intergenic
CAAAGGGTTGGTCAAGGCAT+TGG 0.526940 6.2:+49017350 MS.gene018474:CDS
GAAGAAGCGGAAGCGTATGT+TGG 0.528824 6.2:+49018078 MS.gene018474:CDS
CTTTGTTGGATAAAACCAAA+AGG 0.530990 6.2:-49017332 None:intergenic
AAGTGCTCGATGAAGGTCCA+TGG 0.532614 6.2:+49017204 MS.gene018474:CDS
GCTGCCAAAGTGCTCGATGA+AGG 0.534016 6.2:+49017197 MS.gene018474:CDS
TGATGACGGTGTCCGAGAGT+TGG 0.535876 6.2:+49017613 MS.gene018474:CDS
TGGCGGAATGTCTTCAAAGT+GGG 0.537055 6.2:+49018098 MS.gene018474:CDS
AGAAACTGTGAACAGTGTTA+CGG 0.540315 6.2:-49017406 None:intergenic
TGAAGATGAGGACGATGCAC+CGG 0.542786 6.2:-49018990 None:intergenic
AGCAGAGGCACTCGCAGATG+AGG 0.543272 6.2:-49017933 None:intergenic
AATAGTAACATAGGCACCAT+TGG 0.548299 6.2:-49017495 None:intergenic
CTTAAAGTGAATAGTAACAT+AGG 0.549858 6.2:-49017504 None:intergenic
TCAGTTCTCGGCACAGCAGA+TGG 0.550469 6.2:-49017707 None:intergenic
ACTTCTAACACTGCTGATGA+TGG 0.553163 6.2:+49017758 MS.gene018474:CDS
ATCCAACAAAGGGTTGGTCA+AGG 0.554362 6.2:+49017344 MS.gene018474:CDS
ACATCATTACTTTCAAACAA+AGG 0.558842 6.2:-49018235 None:intergenic
TTTGAGTTGGATTCTGATGA+CGG 0.563105 6.2:+49017599 MS.gene018474:CDS
GGCTCCCACAGATGGTGCAA+GGG 0.567132 6.2:+49018000 MS.gene018474:CDS
TCCTACTGAGGCTGAAACTG+AGG 0.569495 6.2:+49018039 MS.gene018474:CDS
ATATTTCCAATCTAGGTGGC+CGG 0.569698 6.2:+49017789 MS.gene018474:CDS
AACGCGTGGTATTCTGAACC+AGG 0.571898 6.2:+49019035 MS.gene018474:CDS
CTCGTTGGCCAAGAGTGGTA+AGG 0.573181 6.2:+49017874 MS.gene018474:CDS
CTAGGTGATAATGTTAGTGA+GGG 0.573819 6.2:+49018181 MS.gene018474:CDS
AACAACTCGTTGGCCAAGAG+TGG 0.574755 6.2:+49017869 MS.gene018474:CDS
ACTAGGTGATAATGTTAGTG+AGG 0.581765 6.2:+49018180 MS.gene018474:CDS
CGTACAATTTCATTTCGCCA+AGG 0.585667 6.2:-49017379 None:intergenic
ACTCGCAGATGAGGAAGGAA+TGG 0.586847 6.2:-49017924 None:intergenic
GTAACAAGCTCCTTGAAACC+TGG 0.587189 6.2:-49019053 None:intergenic
CTGTTCACAGTTTCTTTATG+CGG 0.589579 6.2:+49017414 MS.gene018474:CDS
GGTGATAATGTTAGTGAGGG+GGG 0.593757 6.2:+49018184 MS.gene018474:CDS
GACTGTTCAGAACAACTCGT+TGG 0.594306 6.2:+49017859 MS.gene018474:CDS
TCAGATCAGAAATGAAGAAG+CGG 0.596892 6.2:+49018065 MS.gene018474:CDS
CGTCCTCATCTTCAAAAGCG+TGG 0.598069 6.2:+49018999 MS.gene018474:CDS
CATTATGAAGAGCATTGAGC+CGG 0.598923 6.2:-49017808 None:intergenic
GCAACTCTACACCCAACTCT+CGG 0.602858 6.2:-49017625 None:intergenic
GAAAGTTACTGCTCCTACTG+AGG 0.603065 6.2:+49018027 MS.gene018474:CDS
AGTGCTCGATGAAGGTCCAT+GGG 0.606553 6.2:+49017205 MS.gene018474:CDS
TTGGCGGAATGTCTTCAAAG+TGG 0.612928 6.2:+49018097 MS.gene018474:CDS
GAGGCACTCGCAGATGAGGA+AGG 0.615911 6.2:-49017929 None:intergenic
TAAAACCAAAAGGTAAACCA+TGG 0.619094 6.2:-49017322 None:intergenic
CCTTCTCGGTCATACTGACA+AGG 0.620615 6.2:+49017562 MS.gene018474:CDS
AGGTGATAATGTTAGTGAGG+GGG 0.620784 6.2:+49018183 MS.gene018474:CDS
AGCACGTTGCACAGTACCAG+GGG 0.628393 6.2:-49017264 None:intergenic
GGCGGAATGTCTTCAAAGTG+GGG 0.629193 6.2:+49018099 MS.gene018474:CDS
AGGAGCTTGTTACTGATGCG+TGG 0.629648 6.2:+49019063 MS.gene018474:CDS
GGACTGCTGCCACTAACAGA+TGG 0.632438 6.2:+49017669 MS.gene018474:CDS
GCTGTTGATAGAATTGCCCC+TGG 0.633464 6.2:+49017248 MS.gene018474:CDS
GTTATTGGGGATACTGAACT+AGG 0.638009 6.2:+49018163 MS.gene018474:CDS
CAGCACGTTGCACAGTACCA+GGG 0.648037 6.2:-49017265 None:intergenic
TGAAAACTATCATACACCCA+TGG 0.648942 6.2:-49017221 None:intergenic
TCCTCAGTTTCAGCCTCAGT+AGG 0.651495 6.2:-49018040 None:intergenic
TTACCAAACCTGCTGTGCTG+AGG 0.651744 6.2:+49017969 MS.gene018474:CDS
CCTTGTCAGTATGACCGAGA+AGG 0.653416 6.2:-49017562 None:intergenic
TAGGTGATAATGTTAGTGAG+GGG 0.655806 6.2:+49018182 MS.gene018474:CDS
GTGAATATTTCCAATCTAGG+TGG 0.656308 6.2:+49017785 MS.gene018474:CDS
TGGCAGGTACGAGCAACCAA+TGG 0.664005 6.2:+49017479 MS.gene018474:CDS
AATGTTGAGAACAGTAGCAG+AGG 0.666398 6.2:-49017948 None:intergenic
TGCTGTGCTGAGGTTACCTG+CGG 0.673278 6.2:+49017979 MS.gene018474:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAAATCTTCAATTTTATTG+CGG - chr6.2:49018416-49018435 None:intergenic 20.0%
!!! TAAATCTTCAATTTTATTGC+GGG - chr6.2:49018415-49018434 None:intergenic 20.0%
! AATGTGAATATTTCCAATCT+AGG + chr6.2:49017782-49017801 MS.gene018474:CDS 25.0%
! ACATCATTACTTTCAAACAA+AGG - chr6.2:49018238-49018257 None:intergenic 25.0%
! CTTAAAGTGAATAGTAACAT+AGG - chr6.2:49017507-49017526 None:intergenic 25.0%
! GAGATTAAACCAATGATTAT+TGG - chr6.2:49018898-49018917 None:intergenic 25.0%
! GAGATTAATTCAATCAAGAA+TGG + chr6.2:49017830-49017849 MS.gene018474:CDS 25.0%
! GTTTGAAAGTAATGATGTAT+CGG + chr6.2:49018240-49018259 MS.gene018474:intron 25.0%
!! GAAAACTCAATATCATTTTG+AGG - chr6.2:49018127-49018146 None:intergenic 25.0%
!! TTTAAATCTGGAATTGCATT+CGG - chr6.2:49018336-49018355 None:intergenic 25.0%
!!! TCTGAACCATATTGATTTTT+GGG + chr6.2:49017292-49017311 MS.gene018474:CDS 25.0%
!!! TTTTGGTTTTATCCAACAAA+GGG + chr6.2:49017334-49017353 MS.gene018474:CDS 25.0%
AAACCATTTATCAACCAGTT+AGG - chr6.2:49018756-49018775 None:intergenic 30.0%
AGGCGACTTTAATGATATTA+TGG + chr6.2:49018698-49018717 MS.gene018474:intron 30.0%
ATTGATTAGACAAATGACGA+AGG - chr6.2:49018656-49018675 None:intergenic 30.0%
CAAAAATCAATATGGTTCAG+AGG - chr6.2:49017293-49017312 None:intergenic 30.0%
CATTTGTCTAATCAATTTGC+AGG + chr6.2:49018660-49018679 MS.gene018474:intron 30.0%
CTTTGTTGGATAAAACCAAA+AGG - chr6.2:49017335-49017354 None:intergenic 30.0%
GACAACATCATTAACATCAA+CGG - chr6.2:49018562-49018581 None:intergenic 30.0%
TAAAACCAAAAGGTAAACCA+TGG - chr6.2:49017325-49017344 None:intergenic 30.0%
TTCACTTGGTTCAAAAGTTT+GGG + chr6.2:49018831-49018850 MS.gene018474:intron 30.0%
TTGGTTTAATCTCTTTCCTA+CGG + chr6.2:49018905-49018924 MS.gene018474:intron 30.0%
TTTCACTTGGTTCAAAAGTT+TGG + chr6.2:49018830-49018849 MS.gene018474:intron 30.0%
! AAACTTTTGAACCAAGTGAA+AGG - chr6.2:49018831-49018850 None:intergenic 30.0%
! TTAAATCTGGAATTGCATTC+GGG - chr6.2:49018335-49018354 None:intergenic 30.0%
!!! AGTTTTCTTTTGCTGTTGAT+GGG + chr6.2:49018140-49018159 MS.gene018474:CDS 30.0%
!!! CTCTGAACCATATTGATTTT+TGG + chr6.2:49017291-49017310 MS.gene018474:CDS 30.0%
!!! CTTTTGGTTTTATCCAACAA+AGG + chr6.2:49017333-49017352 MS.gene018474:CDS 30.0%
AAACCAATGATTATTGGCGA+GGG - chr6.2:49018892-49018911 None:intergenic 35.0%
AATAGTAACATAGGCACCAT+TGG - chr6.2:49017498-49017517 None:intergenic 35.0%
AGAAACTGTGAACAGTGTTA+CGG - chr6.2:49017409-49017428 None:intergenic 35.0%
AGCGATTATTGATACAGGTT+TGG + chr6.2:49018782-49018801 MS.gene018474:intron 35.0%
ATGGATGCTAGTGAAAAAAG+AGG + chr6.2:49018717-49018736 MS.gene018474:intron 35.0%
ATGTCCTGATCTATTTGAGT+TGG + chr6.2:49017586-49017605 MS.gene018474:CDS 35.0%
CAGTTTCTTTATGCGGTTAA+AGG + chr6.2:49017421-49017440 MS.gene018474:CDS 35.0%
CTGTATCAATAATCGCTTGA+CGG - chr6.2:49018779-49018798 None:intergenic 35.0%
CTGTTCACAGTTTCTTTATG+CGG + chr6.2:49017414-49017433 MS.gene018474:CDS 35.0%
CTTGCACCCAAAAATCAATA+TGG - chr6.2:49017301-49017320 None:intergenic 35.0%
GAAGATTTACGCTATTTGCT+TGG + chr6.2:49018426-49018445 MS.gene018474:intron 35.0%
GAATCCAACTCAAATAGATC+AGG - chr6.2:49017593-49017612 None:intergenic 35.0%
GATGTTAATGATGTTGTCCA+TGG + chr6.2:49018564-49018583 MS.gene018474:intron 35.0%
GATTATTGATACAGGTTTGG+TGG + chr6.2:49018785-49018804 MS.gene018474:intron 35.0%
GTGAATATTTCCAATCTAGG+TGG + chr6.2:49017785-49017804 MS.gene018474:CDS 35.0%
TAAACCAATGATTATTGGCG+AGG - chr6.2:49018893-49018912 None:intergenic 35.0%
TCAGATCAGAAATGAAGAAG+CGG + chr6.2:49018065-49018084 MS.gene018474:CDS 35.0%
TGAAAACTATCATACACCCA+TGG - chr6.2:49017224-49017243 None:intergenic 35.0%
! ACTAGGTGATAATGTTAGTG+AGG + chr6.2:49018180-49018199 MS.gene018474:CDS 35.0%
! CAGATTTAAAGTACCTAGTC+CGG + chr6.2:49018346-49018365 MS.gene018474:intron 35.0%
! CTAGGTGATAATGTTAGTGA+GGG + chr6.2:49018181-49018200 MS.gene018474:CDS 35.0%
! TAGGTGATAATGTTAGTGAG+GGG + chr6.2:49018182-49018201 MS.gene018474:CDS 35.0%
! TGTTTTTCTGTTGATCGTAG+TGG + chr6.2:49018459-49018478 MS.gene018474:intron 35.0%
!! AGAACTGATAATGCTTTTGG+AGG + chr6.2:49017722-49017741 MS.gene018474:CDS 35.0%
!! CCAAAAGCATTATCAGTTCT+CGG - chr6.2:49017722-49017741 None:intergenic 35.0%
!! TTTGAGTTGGATTCTGATGA+CGG + chr6.2:49017599-49017618 MS.gene018474:CDS 35.0%
!!! GAGTTTTCTTTTGCTGTTGA+TGG + chr6.2:49018139-49018158 MS.gene018474:CDS 35.0%
!!! GTTTTCTTTTGCTGTTGATG+GGG + chr6.2:49018141-49018160 MS.gene018474:CDS 35.0%
AATGTTGAGAACAGTAGCAG+AGG - chr6.2:49017951-49017970 None:intergenic 40.0%
ACTTCTAACACTGCTGATGA+TGG + chr6.2:49017758-49017777 MS.gene018474:CDS 40.0%
ATATTTCCAATCTAGGTGGC+CGG + chr6.2:49017789-49017808 MS.gene018474:CDS 40.0%
ATGATGTTGTCCATGGTATG+TGG + chr6.2:49018571-49018590 MS.gene018474:intron 40.0%
ATGGGATAGTGATCTGAAGA+TGG - chr6.2:49018954-49018973 None:intergenic 40.0%
CACTTTAAGTACGAGAAGCT+GGG + chr6.2:49017518-49017537 MS.gene018474:CDS 40.0%
CGTACAATTTCATTTCGCCA+AGG - chr6.2:49017382-49017401 None:intergenic 40.0%
CGTCAAGCGATTATTGATAC+AGG + chr6.2:49018777-49018796 MS.gene018474:intron 40.0%
CTAATCAATTTGCAGGTCCT+TGG + chr6.2:49018667-49018686 MS.gene018474:intron 40.0%
GAAGAAATCTTCGTCCTAAC+TGG + chr6.2:49018739-49018758 MS.gene018474:intron 40.0%
GACAAATGAGTCTGATAGGA+TGG + chr6.2:49018289-49018308 MS.gene018474:intron 40.0%
GGACATCTGTTCAAAAGGAT+GGG - chr6.2:49018972-49018991 None:intergenic 40.0%
GTATTCTGAACCAGGTTTCA+AGG + chr6.2:49019043-49019062 MS.gene018474:CDS 40.0%
GTTATTGGGGATACTGAACT+AGG + chr6.2:49018163-49018182 MS.gene018474:CDS 40.0%
TCACTTTAAGTACGAGAAGC+TGG + chr6.2:49017517-49017536 MS.gene018474:CDS 40.0%
TCTGATAGGATGGAATTGCA+GGG + chr6.2:49018299-49018318 MS.gene018474:intron 40.0%
TGGAAGGATATCCTTTCACT+TGG + chr6.2:49018817-49018836 MS.gene018474:intron 40.0%
TGGGATAGTGATCTGAAGAT+GGG - chr6.2:49018953-49018972 None:intergenic 40.0%
! AGGTGATAATGTTAGTGAGG+GGG + chr6.2:49018183-49018202 MS.gene018474:CDS 40.0%
! AGTAATAGCCTTACCACTCT+TGG - chr6.2:49017885-49017904 None:intergenic 40.0%
! CAAGTCCATGGTTTACCTTT+TGG + chr6.2:49017317-49017336 MS.gene018474:CDS 40.0%
! CATCCTTTTGAACAGATGTC+CGG + chr6.2:49018971-49018990 MS.gene018474:intron 40.0%
! CGGACTAGGTACTTTAAATC+TGG - chr6.2:49018348-49018367 None:intergenic 40.0%
! GAAAGTAATGATGTATCGGC+AGG + chr6.2:49018244-49018263 MS.gene018474:intron 40.0%
! TTGCTGTTGATGGGGTTATT+GGG + chr6.2:49018149-49018168 MS.gene018474:CDS 40.0%
!! AAACCACGCTTTTGAAGATG+AGG - chr6.2:49019005-49019024 None:intergenic 40.0%
!! CATTATGAAGAGCATTGAGC+CGG - chr6.2:49017811-49017830 None:intergenic 40.0%
!! CCGAGAACTGATAATGCTTT+TGG + chr6.2:49017719-49017738 MS.gene018474:CDS 40.0%
!! CGTCCTAACTGGTTGATAAA+TGG + chr6.2:49018750-49018769 MS.gene018474:intron 40.0%
!! GGTTTTATCCAACAAAGGGT+TGG + chr6.2:49017338-49017357 MS.gene018474:CDS 40.0%
!! TTTGCTGTTGATGGGGTTAT+TGG + chr6.2:49018148-49018167 MS.gene018474:CDS 40.0%
!!! TACCTGCCACTGTTTTTTCA+GGG - chr6.2:49017468-49017487 None:intergenic 40.0%
AAGACGTTCTTCAACCACAC+GGG - chr6.2:49018862-49018881 None:intergenic 45.0%
AAGTCGCCTAGTATACACCA+AGG - chr6.2:49018687-49018706 None:intergenic 45.0%
AAGTGCGCCAAAAAAGAGCA+AGG - chr6.2:49018497-49018516 None:intergenic 45.0%
CAAGACGTTCTTCAACCACA+CGG - chr6.2:49018863-49018882 None:intergenic 45.0%
CCTATCAGACTCATTTGTCC+CGG - chr6.2:49018288-49018307 None:intergenic 45.0%
CGGACATCTGTTCAAAAGGA+TGG - chr6.2:49018973-49018992 None:intergenic 45.0%
CTGATAGGATGGAATTGCAG+GGG + chr6.2:49018300-49018319 MS.gene018474:intron 45.0%
GAAAGTTACTGCTCCTACTG+AGG + chr6.2:49018027-49018046 MS.gene018474:CDS 45.0%
GACTGTTCAGAACAACTCGT+TGG + chr6.2:49017859-49017878 MS.gene018474:CDS 45.0%
GGGATAGTGATCTGAAGATG+GGG - chr6.2:49018952-49018971 None:intergenic 45.0%
GTAACAAGCTCCTTGAAACC+TGG - chr6.2:49019056-49019075 None:intergenic 45.0%
GTCTGATAGGATGGAATTGC+AGG + chr6.2:49018298-49018317 MS.gene018474:intron 45.0%
GTCTTGCAACCATCTGTTAG+TGG - chr6.2:49017681-49017700 None:intergenic 45.0%
GTGAAAGGATATCCTTCCAC+CGG - chr6.2:49018816-49018835 None:intergenic 45.0%
GTGTCTCGCTTAAGAACAAG+AGG - chr6.2:49018386-49018405 None:intergenic 45.0%
TCGCTTAAGAACAAGAGGTC+CGG - chr6.2:49018381-49018400 None:intergenic 45.0%
TCTGTTGATCGTAGTGGTAG+AGG + chr6.2:49018465-49018484 MS.gene018474:intron 45.0%
TGGCGGAATGTCTTCAAAGT+GGG + chr6.2:49018098-49018117 MS.gene018474:CDS 45.0%
TTGGCGGAATGTCTTCAAAG+TGG + chr6.2:49018097-49018116 MS.gene018474:CDS 45.0%
! AGCTGGGAGTTTTCTGCTAT+AGG + chr6.2:49017534-49017553 MS.gene018474:CDS 45.0%
! GGAGTTTTCTGCTATAGGTG+TGG + chr6.2:49017539-49017558 MS.gene018474:CDS 45.0%
! GGTGATAATGTTAGTGAGGG+GGG + chr6.2:49018184-49018203 MS.gene018474:CDS 45.0%
! TGCTGTTGATGGGGTTATTG+GGG + chr6.2:49018150-49018169 MS.gene018474:CDS 45.0%
!! ATCCAACAAAGGGTTGGTCA+AGG + chr6.2:49017344-49017363 MS.gene018474:CDS 45.0%
!! CAAGGCATTGGTCAATTCCT+TGG + chr6.2:49017362-49017381 MS.gene018474:CDS 45.0%
!! GACCTGTTTTTCGTCGTGTT+GGG + chr6.2:49017648-49017667 MS.gene018474:CDS 45.0%
!! GCTTTTGGAGGAACACATGT+TGG + chr6.2:49017734-49017753 MS.gene018474:CDS 45.0%
!! TACAGGTTTGGTGGATGTTC+CGG + chr6.2:49018794-49018813 MS.gene018474:intron 45.0%
!!! ACCTGCCACTGTTTTTTCAG+GGG - chr6.2:49017467-49017486 None:intergenic 45.0%
!!! GATTTTTGGGTGCAAGTCCA+TGG + chr6.2:49017305-49017324 MS.gene018474:CDS 45.0%
!!! GTACCTGCCACTGTTTTTTC+AGG - chr6.2:49017469-49017488 None:intergenic 45.0%
AACAACTCGTTGGCCAAGAG+TGG + chr6.2:49017869-49017888 MS.gene018474:CDS 50.0%
AACGCGTGGTATTCTGAACC+AGG + chr6.2:49019035-49019054 MS.gene018474:CDS 50.0%
AACTATGGGTACCCTGAAGG+GGG + chr6.2:49018606-49018625 MS.gene018474:intron 50.0%
AAGTGCTCGATGAAGGTCCA+TGG + chr6.2:49017204-49017223 MS.gene018474:CDS 50.0%
ACTCGCAGATGAGGAAGGAA+TGG - chr6.2:49017927-49017946 None:intergenic 50.0%
AGACGTTCTTCAACCACACG+GGG - chr6.2:49018861-49018880 None:intergenic 50.0%
AGATTCTCCAGAGTAGCCGT+AGG - chr6.2:49018924-49018943 None:intergenic 50.0%
AGTGCTCGATGAAGGTCCAT+GGG + chr6.2:49017205-49017224 MS.gene018474:CDS 50.0%
CAACTATGGGTACCCTGAAG+GGG + chr6.2:49018605-49018624 MS.gene018474:intron 50.0%
CATGGTATGTGGAGACTCAC+CGG + chr6.2:49018582-49018601 MS.gene018474:intron 50.0%
CCGGGACAAATGAGTCTGAT+AGG + chr6.2:49018285-49018304 MS.gene018474:intron 50.0%
CCTTCTCGGTCATACTGACA+AGG + chr6.2:49017562-49017581 MS.gene018474:CDS 50.0%
CCTTGTCAGTATGACCGAGA+AGG - chr6.2:49017565-49017584 None:intergenic 50.0%
CGTCCTCATCTTCAAAAGCG+TGG + chr6.2:49018999-49019018 MS.gene018474:CDS 50.0%
CTCGTCCCCTGAAAAAACAG+TGG + chr6.2:49017459-49017478 MS.gene018474:CDS 50.0%
GAGCCCTCGCCAATAATCAT+TGG + chr6.2:49018886-49018905 MS.gene018474:intron 50.0%
GCAACTATGGGTACCCTGAA+GGG + chr6.2:49018604-49018623 MS.gene018474:intron 50.0%
GCAACTCTACACCCAACTCT+CGG - chr6.2:49017628-49017647 None:intergenic 50.0%
GCACCGGACATCTGTTCAAA+AGG - chr6.2:49018977-49018996 None:intergenic 50.0%
GGCGGAATGTCTTCAAAGTG+GGG + chr6.2:49018099-49018118 MS.gene018474:CDS 50.0%
GTCCCAACACGACGAAAAAC+AGG - chr6.2:49017653-49017672 None:intergenic 50.0%
GTTGATCGTAGTGGTAGAGG+AGG + chr6.2:49018468-49018487 MS.gene018474:intron 50.0%
TAACCTCAGCACAGCAGGTT+TGG - chr6.2:49017975-49017994 None:intergenic 50.0%
TCCCCTGAAAAAACAGTGGC+AGG + chr6.2:49017463-49017482 MS.gene018474:CDS 50.0%
TCCTACTGAGGCTGAAACTG+AGG + chr6.2:49018039-49018058 MS.gene018474:CDS 50.0%
TCCTCAGTTTCAGCCTCAGT+AGG - chr6.2:49018043-49018062 None:intergenic 50.0%
TCGGCACAGCAGATGGTATA+GGG - chr6.2:49017703-49017722 None:intergenic 50.0%
TCTCTTTCCTACGGCTACTC+TGG + chr6.2:49018914-49018933 MS.gene018474:intron 50.0%
TGAAGATGAGGACGATGCAC+CGG - chr6.2:49018993-49019012 None:intergenic 50.0%
TGCCTTGACCAACCCTTTGT+TGG - chr6.2:49017349-49017368 None:intergenic 50.0%
TGCTATAGGTGTGGCCTTCT+CGG + chr6.2:49017548-49017567 MS.gene018474:CDS 50.0%
TGGACCTTCATCGAGCACTT+TGG - chr6.2:49017204-49017223 None:intergenic 50.0%
TTACCAAACCTGCTGTGCTG+AGG + chr6.2:49017969-49017988 MS.gene018474:CDS 50.0%
! GAAGAAGCGGAAGCGTATGT+TGG + chr6.2:49018078-49018097 MS.gene018474:CDS 50.0%
! GCAGGTCCTTGGTGTATACT+AGG + chr6.2:49018678-49018697 MS.gene018474:intron 50.0%
! GCTGTTGATAGAATTGCCCC+TGG + chr6.2:49017248-49017267 MS.gene018474:CDS 50.0%
! GTTTTCGCTACGAAAACGCG+TGG + chr6.2:49019021-49019040 MS.gene018474:CDS 50.0%
! TTCAGGGTACCCATAGTTGC+CGG - chr6.2:49018604-49018623 None:intergenic 50.0%
!! AGGAGCTTGTTACTGATGCG+TGG + chr6.2:49019063-49019082 MS.gene018474:CDS 50.0%
!! CAAAGGGTTGGTCAAGGCAT+TGG + chr6.2:49017350-49017369 MS.gene018474:CDS 50.0%
!! CGACCTGTTTTTCGTCGTGT+TGG + chr6.2:49017647-49017666 MS.gene018474:CDS 50.0%
!!! GAGGTGGCCTTGCTCTTTTT+TGG + chr6.2:49018487-49018506 MS.gene018474:intron 50.0%
AAGTTTGGGAACACCCCGTG+TGG + chr6.2:49018845-49018864 MS.gene018474:intron 55.0%
ACAGCACGTTGCACAGTACC+AGG - chr6.2:49017269-49017288 None:intergenic 55.0%
AGAGGTCCGGATTGAAGTGC+CGG - chr6.2:49018368-49018387 None:intergenic 55.0%
AGCACGTTGCACAGTACCAG+GGG - chr6.2:49017267-49017286 None:intergenic 55.0%
ATTGAGCCGGCCACCTAGAT+TGG - chr6.2:49017798-49017817 None:intergenic 55.0%
CAGCACGTTGCACAGTACCA+GGG - chr6.2:49017268-49017287 None:intergenic 55.0%
CCTAGTCCGGCACTTCAATC+CGG + chr6.2:49018359-49018378 MS.gene018474:intron 55.0%
CGGTGAGTCTCCACATACCA+TGG - chr6.2:49018584-49018603 None:intergenic 55.0%
CTCGGCACAGCAGATGGTAT+AGG - chr6.2:49017704-49017723 None:intergenic 55.0%
CTCGTTGGCCAAGAGTGGTA+AGG + chr6.2:49017874-49017893 MS.gene018474:CDS 55.0%
GATCGTAGTGGTAGAGGAGG+TGG + chr6.2:49018471-49018490 MS.gene018474:intron 55.0%
GGACTGCTGCCACTAACAGA+TGG + chr6.2:49017669-49017688 MS.gene018474:CDS 55.0%
GGAGACTCACCGGCAACTAT+GGG + chr6.2:49018592-49018611 MS.gene018474:intron 55.0%
GGCAACTATGGGTACCCTGA+AGG + chr6.2:49018603-49018622 MS.gene018474:intron 55.0%
TCAGACTCATTTGTCCCGGC+AGG - chr6.2:49018284-49018303 None:intergenic 55.0%
TCAGCCCTTGCACCATCTGT+GGG - chr6.2:49018007-49018026 None:intergenic 55.0%
TCAGTTCTCGGCACAGCAGA+TGG - chr6.2:49017710-49017729 None:intergenic 55.0%
TGCTGTGCTGAGGTTACCTG+CGG + chr6.2:49017979-49017998 MS.gene018474:CDS 55.0%
TGGAGACTCACCGGCAACTA+TGG + chr6.2:49018591-49018610 MS.gene018474:intron 55.0%
TGGCAGGTACGAGCAACCAA+TGG + chr6.2:49017479-49017498 MS.gene018474:CDS 55.0%
! ATCGGCAGGCTCTGATGATC+AGG + chr6.2:49018258-49018277 MS.gene018474:intron 55.0%
! GAAGCGGAAGCGTATGTTGG+CGG + chr6.2:49018081-49018100 MS.gene018474:CDS 55.0%
! GATGACGGTGTCCGAGAGTT+GGG + chr6.2:49017614-49017633 MS.gene018474:CDS 55.0%
! GCTGCCAAAGTGCTCGATGA+AGG + chr6.2:49017197-49017216 MS.gene018474:CDS 55.0%
! GGATGGAATTGCAGGGGTGT+AGG + chr6.2:49018306-49018325 MS.gene018474:intron 55.0%
! TTGGTGGATGTTCCGGTGGA+AGG + chr6.2:49018801-49018820 MS.gene018474:intron 55.0%
!! AGGTTTGGTGGATGTTCCGG+TGG + chr6.2:49018797-49018816 MS.gene018474:intron 55.0%
!! TGATGACGGTGTCCGAGAGT+TGG + chr6.2:49017613-49017632 MS.gene018474:CDS 55.0%
CTCAGCCCTTGCACCATCTG+TGG - chr6.2:49018008-49018027 None:intergenic 60.0%
CTCTGATGATCAGGCCTGCC+GGG + chr6.2:49018267-49018286 MS.gene018474:intron 60.0%
GCAGGTAACCTCAGCACAGC+AGG - chr6.2:49017980-49017999 None:intergenic 60.0%
GCTCTGATGATCAGGCCTGC+CGG + chr6.2:49018266-49018285 MS.gene018474:intron 60.0%
GGCTCCCACAGATGGTGCAA+GGG + chr6.2:49018000-49018019 MS.gene018474:CDS 60.0%
TCCTCCTACGTCCCCCTTCA+GGG - chr6.2:49018620-49018639 None:intergenic 60.0%
TTACCTGCGGCTCCCACAGA+TGG + chr6.2:49017992-49018011 MS.gene018474:CDS 60.0%
! GAGGCACTCGCAGATGAGGA+AGG - chr6.2:49017932-49017951 None:intergenic 60.0%
!! AGCAGAGGCACTCGCAGATG+AGG - chr6.2:49017936-49017955 None:intergenic 60.0%
!! CCGGATTGAAGTGCCGGACT+AGG - chr6.2:49018362-49018381 None:intergenic 60.0%
ACCCTGAAGGGGGACGTAGG+AGG + chr6.2:49018616-49018635 MS.gene018474:intron 65.0%
CGGCTCCCACAGATGGTGCA+AGG + chr6.2:49017999-49018018 MS.gene018474:CDS 65.0%
GGGACGTAGGAGGACTGCGT+GGG + chr6.2:49018626-49018645 MS.gene018474:intron 65.0%
GGTACCCTGAAGGGGGACGT+AGG + chr6.2:49018613-49018632 MS.gene018474:intron 65.0%
GTCCTCCTACGTCCCCCTTC+AGG - chr6.2:49018621-49018640 None:intergenic 65.0%
GCACCATCTGTGGGAGCCGC+AGG - chr6.2:49017998-49018017 None:intergenic 70.0%
GGGGACGTAGGAGGACTGCG+TGG + chr6.2:49018625-49018644 MS.gene018474:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 49017191 49019110 49017191 ID=MS.gene018474
chr6.2 mRNA 49017191 49019110 49017191 ID=MS.gene018474.t1;Parent=MS.gene018474
chr6.2 exon 49017191 49018247 49017191 ID=MS.gene018474.t1.exon1;Parent=MS.gene018474.t1
chr6.2 CDS 49017191 49018247 49017191 ID=cds.MS.gene018474.t1;Parent=MS.gene018474.t1
chr6.2 exon 49018986 49019110 49018986 ID=MS.gene018474.t1.exon2;Parent=MS.gene018474.t1
chr6.2 CDS 49018986 49019110 49018986 ID=cds.MS.gene018474.t1;Parent=MS.gene018474.t1
Gene Sequence

>MS.gene018474

ATGGATGCTGCCAAAGTGCTCGATGAAGGTCCATGGGTGTATGATAGTTTTCATATCGCTGTTGATAGAATTGCCCCTGGTACTGTGCAACGTGCTGTGCCTCTGAACCATATTGATTTTTGGGTGCAAGTCCATGGTTTACCTTTTGGTTTTATCCAACAAAGGGTTGGTCAAGGCATTGGTCAATTCCTTGGCGAAATGAAATTGTACGACAACCGTAACACTGTTCACAGTTTCTTTATGCGGTTAAAGGTTAGAATTGACATCACTCGTCCCCTGAAAAAACAGTGGCAGGTACGAGCAACCAATGGTGCCTATGTTACTATTCACTTTAAGTACGAGAAGCTGGGAGTTTTCTGCTATAGGTGTGGCCTTCTCGGTCATACTGACAAGGTATGTCCTGATCTATTTGAGTTGGATTCTGATGACGGTGTCCGAGAGTTGGGTGTAGAGTTGCGACCTGTTTTTCGTCGTGTTGGGACTGCTGCCACTAACAGATGGTTGCAAGACCCTATACCATCTGCTGTGCCGAGAACTGATAATGCTTTTGGAGGAACACATGTTGGCACTTCTAACACTGCTGATGATGGTAATGTGAATATTTCCAATCTAGGTGGCCGGCTCAATGCTCTTCATAATGAGATTAATTCAATCAAGAATGGTATTATGACTGTTCAGAACAACTCGTTGGCCAAGAGTGGTAAGGCTATTACTGTTGTGCATCTAAATTCTGCCATTCCTTCCTCATCTGCGAGTGCCTCTGCTACTGTTCTCAACATTACCAAACCTGCTGTGCTGAGGTTACCTGCGGCTCCCACAGATGGTGCAAGGGCTGAGAAAGTTACTGCTCCTACTGAGGCTGAAACTGAGGATATCAGATCAGAAATGAAGAAGCGGAAGCGTATGTTGGCGGAATGTCTTCAAAGTGGGGCTCCTCAAAATGATATTGAGTTTTCTTTTGCTGTTGATGGGGTTATTGGGGATACTGAACTAGGTGATAATGTTAGTGAGGGGGGTGATATTGTAATGAATGTTTGTGACAATCCTTTGTTTGAAAGTAATGATGTATCGGCAGGCTCTGATGATCAGGCCTGCCGGGACAAATGAGTCTGATAGGATGGAATTGCAGGGGTGTAGGTAGCCCGAATGCAATTCCAGATTTAAAGTACCTAGTCCGGCACTTCAATCCGGACCTCTTGTTCTTAAGCGAGACACTAGTCTCCCGCAATAAAATTGAAGATTTACGCTATTTGCTTGGCTTTGATTTTTGTTTTTCTGTTGATCGTAGTGGTAGAGGAGGTGGCCTTGCTCTTTTTTGGCGCACTTCTTTTAGTTGTCAGATTGTAAATTACTCAAATAATCATATTTCCGTTGATGTTAATGATGTTGTCCATGGTATGTGGAGACTCACCGGCAACTATGGGTACCCTGAAGGGGGACGTAGGAGGACTGCGTGGGATTTCCTTCGTCATTTGTCTAATCAATTTGCAGGTCCTTGGTGTATACTAGGCGACTTTAATGATATTATGGATGCTAGTGAAAAAAGAGGAAGAAATCTTCGTCCTAACTGGTTGATAAATGGTTTCCGTCAAGCGATTATTGATACAGGTTTGGTGGATGTTCCGGTGGAAGGATATCCTTTCACTTGGTTCAAAAGTTTGGGAACACCCCGTGTGGTTGAAGAACGTCTTGATAGAGCCCTCGCCAATAATCATTGGTTTAATCTCTTTCCTACGGCTACTCTGGAGAATCTTGCTGCCCCATCTTCAGATCACTATCCCATCCTTTTGAACAGATGTCCGGTGCATCGTCCTCATCTTCAAAAGCGTGGTTTTCGCTACGAAAACGCGTGGTATTCTGAACCAGGTTTCAAGGAGCTTGTTACTGATGCGTGGCACACGCAATCTGCAGTTTCAGTAG
Protein sequence

>MS.gene018474.t1

MDAAKVLDEGPWVYDSFHIAVDRIAPGTVQRAVPLNHIDFWVQVHGLPFGFIQQRVGQGIGQFLGEMKLYDNRNTVHSFFMRLKVRIDITRPLKKQWQVRATNGAYVTIHFKYEKLGVFCYRCGLLGHTDKVCPDLFELDSDDGVRELGVELRPVFRRVGTAATNRWLQDPIPSAVPRTDNAFGGTHVGTSNTADDGNVNISNLGGRLNALHNEINSIKNGIMTVQNNSLAKSGKAITVVHLNSAIPSSSASASATVLNITKPAVLRLPAAPTDGARAEKVTAPTEAETEDIRSEMKKRKRMLAECLQSGAPQNDIEFSFAVDGVIGDTELGDNVSEGGDIVMNVCDNPLFENVRCIVLIFKSVVFATKTRGILNQVSRSLLLMRGTRNLQFQ