AlfalfaGEDB | MS.gene46941

M. sativa cultivar XinJiangDaYe / MS.gene46941

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46941.t1	RHN40311.1	60.2	294	116	1	1	294	128	420	1.70E-98	369.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46941.t1	A0A396GJD3	60.2	294	116	1	1	294	128	420	1.2e-98	369.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene46941	MS.gene86849	PPI
MS.gene46941	MS.gene049512	PPI
MS.gene46941	MS.gene27329	PPI
MS.gene46941	MS.gene41393	PPI
MS.gene22200	MS.gene46941	PPI
MS.gene46941	MS.gene42903	PPI
MS.gene46941	MS.gene80362	PPI
MS.gene46941	MS.gene89815	PPI
MS.gene46941	MS.gene016632	PPI
MS.gene46941	MS.gene018474	PPI
MS.gene46941	MS.gene048088	PPI
MS.gene46941	MS.gene86868	PPI
MS.gene94654	MS.gene46941	PPI
MS.gene46941	MS.gene058889	PPI
MS.gene46941	MS.gene96163	PPI
MS.gene063214	MS.gene46941	PPI
MS.gene035626	MS.gene46941	PPI
MS.gene46941	MS.gene050679	PPI
MS.gene46941	MS.gene34463	PPI
MS.gene46941	MS.gene015248	PPI
MS.gene30208	MS.gene46941	PPI
MS.gene46941	MS.gene042614	PPI
MS.gene69495	MS.gene46941	PPI
MS.gene46941	MS.gene61499	PPI
MS.gene46941	MS.gene51804	PPI
MS.gene46941	MS.gene81194	PPI
MS.gene95561	MS.gene46941	PPI
MS.gene46941	MS.gene05358	PPI
MS.gene57019	MS.gene46941	PPI
MS.gene46941	MS.gene019001	PPI
MS.gene46941	MS.gene038676	PPI
MS.gene46941	MS.gene53904	PPI
MS.gene021968	MS.gene46941	PPI
MS.gene46941	MS.gene025675	PPI
MS.gene46941	MS.gene94654	PPI
MS.gene46941	MS.gene71637	PPI
MS.gene46941	MS.gene55209	PPI
MS.gene46941	MS.gene43924	PPI
MS.gene008275	MS.gene46941	PPI
MS.gene46941	MS.gene022929	PPI
MS.gene46941	MS.gene85295	PPI
MS.gene46941	MS.gene007022	PPI
MS.gene46941	MS.gene52349	PPI
MS.gene46941	MS.gene021647	PPI
MS.gene46941	MS.gene047954	PPI
MS.gene46941	MS.gene071784	PPI
MS.gene46941	MS.gene048342	PPI
MS.gene46941	MS.gene069624	PPI
MS.gene46941	MS.gene83979	PPI
MS.gene46941	MS.gene013890	PPI
MS.gene46941	MS.gene073582	PPI
MS.gene46941	MS.gene016719	PPI
MS.gene46941	MS.gene048072	PPI
MS.gene46941	MS.gene028714	PPI
MS.gene46941	MS.gene88393	PPI
MS.gene46941	MS.gene042027	PPI
MS.gene46941	MS.gene048706	PPI
MS.gene46941	MS.gene69586	PPI
MS.gene46941	MS.gene45083	PPI
MS.gene46941	MS.gene049561	PPI
MS.gene46941	MS.gene008658	PPI
MS.gene96109	MS.gene46941	PPI
MS.gene46941	MS.gene47792	PPI
MS.gene46941	MS.gene49057	PPI
MS.gene46941	MS.gene63150	PPI
MS.gene46941	MS.gene03936	PPI
MS.gene46941	MS.gene43393	PPI
MS.gene46941	MS.gene08708	PPI
MS.gene46941	MS.gene86275	PPI
MS.gene46941	MS.gene034643	PPI
MS.gene46941	MS.gene60059	PPI
MS.gene46941	MS.gene038098	PPI
MS.gene46941	MS.gene037634	PPI
MS.gene46941	MS.gene071320	PPI
MS.gene46941	MS.gene012019	PPI
MS.gene016102	MS.gene46941	PPI
MS.gene96541	MS.gene46941	PPI
MS.gene46941	MS.gene048747	PPI
MS.gene46941	MS.gene000640	PPI
MS.gene46941	MS.gene012889	PPI
MS.gene46941	MS.gene038757	PPI
MS.gene46941	MS.gene000506	PPI
MS.gene46941	MS.gene061850	PPI
MS.gene46941	MS.gene030090	PPI
MS.gene46941	MS.gene39956	PPI
MS.gene025873	MS.gene46941	PPI
MS.gene46941	MS.gene028716	PPI
MS.gene46941	MS.gene74639	PPI
MS.gene46941	MS.gene071133	PPI
MS.gene46941	MS.gene60266	PPI
MS.gene46941	MS.gene98467	PPI
MS.gene46941	MS.gene013644	PPI
MS.gene05358	MS.gene46941	PPI
MS.gene46941	MS.gene024522	PPI
MS.gene46941	MS.gene54051	PPI
MS.gene46941	MS.gene22111	PPI
MS.gene46941	MS.gene049610	PPI
MS.gene46941	MS.gene010290	PPI
MS.gene46941	MS.gene93396	PPI
MS.gene46941	MS.gene37955	PPI
MS.gene46941	MS.gene95561	PPI
MS.gene065627	MS.gene46941	PPI
MS.gene46941	MS.gene92517	PPI
MS.gene46941	MS.gene34197	PPI
MS.gene46941	MS.gene36069	PPI
MS.gene46941	MS.gene045875	PPI
MS.gene46941	MS.gene010890	PPI
MS.gene46941	MS.gene84790	PPI
MS.gene46941	MS.gene71675	PPI
MS.gene46941	MS.gene055683	PPI
MS.gene46941	MS.gene061579	PPI
MS.gene46941	MS.gene05319	PPI
MS.gene46941	MS.gene69495	PPI
MS.gene46941	MS.gene032311	PPI
MS.gene46941	MS.gene002590	PPI
MS.gene56991	MS.gene46941	PPI
MS.gene46941	MS.gene41979	PPI
MS.gene46941	MS.gene04970	PPI
MS.gene46941	MS.gene008927	PPI
MS.gene46941	MS.gene26038	PPI
MS.gene46941	MS.gene060788	PPI
MS.gene46941	MS.gene98616	PPI
MS.gene28545	MS.gene46941	PPI
MS.gene46941	MS.gene23521	PPI
MS.gene46941	MS.gene41643	PPI
MS.gene46941	MS.gene77990	PPI
MS.gene46941	MS.gene65546	PPI
MS.gene46941	MS.gene062511	PPI
MS.gene46941	MS.gene008861	PPI
MS.gene46941	MS.gene065627	PPI
MS.gene46941	MS.gene027994	PPI
MS.gene46941	MS.gene96541	PPI
MS.gene46941	MS.gene26433	PPI
MS.gene46941	MS.gene045614	PPI
MS.gene46941	MS.gene064966	PPI
MS.gene46941	MS.gene69584	PPI
MS.gene46941	MS.gene036423	PPI
MS.gene46941	MS.gene76420	PPI
MS.gene46941	MS.gene30136	PPI
MS.gene46941	MS.gene46353	PPI
MS.gene46941	MS.gene65471	PPI
MS.gene46941	MS.gene51799	PPI
MS.gene46941	MS.gene062067	PPI
MS.gene46941	MS.gene060386	PPI
MS.gene46941	MS.gene61651	PPI
MS.gene46941	MS.gene013676	PPI
MS.gene46941	MS.gene29406	PPI
MS.gene46941	MS.gene63762	PPI
MS.gene46941	MS.gene09023	PPI
MS.gene46941	MS.gene021968	PPI
MS.gene46941	MS.gene054508	PPI
MS.gene46941	MS.gene025987	PPI
MS.gene72520	MS.gene46941	PPI
MS.gene46941	MS.gene95960	PPI
MS.gene46941	MS.gene053373	PPI
MS.gene013193	MS.gene46941	PPI
MS.gene46941	MS.gene041264	PPI
MS.gene46941	MS.gene35175	PPI
MS.gene46941	MS.gene042559	PPI
MS.gene46941	MS.gene035626	PPI
MS.gene46941	MS.gene44083	PPI
MS.gene46941	MS.gene000629	PPI
MS.gene46941	MS.gene072852	PPI
MS.gene46941	MS.gene65474	PPI
MS.gene46941	MS.gene018745	PPI
MS.gene46941	MS.gene025401	PPI
MS.gene46941	MS.gene34812	PPI
MS.gene46941	MS.gene57044	PPI
MS.gene46941	MS.gene015093	PPI
MS.gene46941	MS.gene04134	PPI
MS.gene46941	MS.gene06164	PPI
MS.gene46941	MS.gene50392	PPI
MS.gene46941	MS.gene22730	PPI
MS.gene46941	MS.gene000379	PPI
MS.gene46941	MS.gene032299	PPI
MS.gene46941	MS.gene017586	PPI
MS.gene46941	MS.gene057828	PPI
MS.gene46941	MS.gene08606	PPI
MS.gene46941	MS.gene70932	PPI
MS.gene46941	MS.gene09517	PPI
MS.gene46941	MS.gene98756	PPI
MS.gene46941	MS.gene87845	PPI
MS.gene46941	MS.gene57019	PPI
MS.gene46941	MS.gene32415	PPI
MS.gene46941	MS.gene85308	PPI
MS.gene038676	MS.gene46941	PPI
MS.gene46941	MS.gene64130	PPI
MS.gene46941	MS.gene62249	PPI
MS.gene46941	MS.gene58419	PPI
MS.gene93396	MS.gene46941	PPI
MS.gene46941	MS.gene046089	PPI
MS.gene46941	MS.gene053747	PPI
MS.gene46941	MS.gene28545	PPI
MS.gene46941	MS.gene69490	PPI
MS.gene46941	MS.gene021555	PPI
MS.gene46941	MS.gene05576	PPI
MS.gene46941	MS.gene044729	PPI
MS.gene46941	MS.gene96109	PPI
MS.gene46941	MS.gene008275	PPI
MS.gene46941	MS.gene60390	PPI
MS.gene46941	MS.gene039692	PPI
MS.gene46941	MS.gene027169	PPI
MS.gene46941	MS.gene55682	PPI
MS.gene46941	MS.gene81712	PPI
MS.gene20246	MS.gene46941	PPI
MS.gene46941	MS.gene038623	PPI
MS.gene46941	MS.gene005120	PPI
MS.gene46941	MS.gene025873	PPI
MS.gene46941	MS.gene055560	PPI
MS.gene46941	MS.gene05357	PPI
MS.gene46941	MS.gene024297	PPI
MS.gene46941	MS.gene059269	PPI
MS.gene46941	MS.gene35202	PPI
MS.gene46941	MS.gene22200	PPI
MS.gene46941	MS.gene057934	PPI
MS.gene46941	MS.gene37537	PPI
MS.gene46941	MS.gene024841	PPI
MS.gene46941	MS.gene20246	PPI
MS.gene46941	MS.gene069786	PPI
MS.gene46941	MS.gene42010	PPI
MS.gene46941	MS.gene025158	PPI
MS.gene46941	MS.gene40828	PPI
MS.gene042559	MS.gene46941	PPI
MS.gene46941	MS.gene87529	PPI
MS.gene46941	MS.gene30208	PPI
MS.gene46941	MS.gene98471	PPI
MS.gene46941	MS.gene97410	PPI
MS.gene46941	MS.gene56991	PPI
MS.gene46941	MS.gene010656	PPI
MS.gene69490	MS.gene46941	PPI
MS.gene46941	MS.gene013193	PPI
MS.gene46941	MS.gene40469	PPI
MS.gene015248	MS.gene46941	PPI
MS.gene46941	MS.gene65623	PPI
MS.gene34812	MS.gene46941	PPI
MS.gene46941	MS.gene012748	PPI
MS.gene46941	MS.gene063214	PPI
MS.gene46941	MS.gene66651	PPI
MS.gene46941	MS.gene043140	PPI
MS.gene46941	MS.gene02896	PPI
MS.gene46941	MS.gene71588	PPI
MS.gene08106	MS.gene46941	PPI
MS.gene46941	MS.gene72520	PPI
MS.gene46941	MS.gene61452	PPI
MS.gene46941	MS.gene05231	PPI
MS.gene46941	MS.gene03149	PPI
MS.gene46941	MS.gene46948	PPI
MS.gene067340	MS.gene46941	PPI
MS.gene46941	MS.gene29321	PPI
MS.gene46941	MS.gene037049	PPI
MS.gene46941	MS.gene026680	PPI
MS.gene46941	MS.gene051449	PPI
MS.gene46941	MS.gene24278	PPI
MS.gene05357	MS.gene46941	PPI
MS.gene46941	MS.gene34618	PPI
MS.gene46941	MS.gene042651	PPI
MS.gene46941	MS.gene59460	PPI
MS.gene46941	MS.gene019165	PPI
MS.gene46941	MS.gene060773	PPI
MS.gene46941	MS.gene66650	PPI
MS.gene46941	MS.gene009121	PPI
MS.gene46941	MS.gene08713	PPI
MS.gene46941	MS.gene038394	PPI
MS.gene46941	MS.gene09589	PPI
MS.gene46941	MS.gene024405	PPI
MS.gene46941	MS.gene067340	PPI
MS.gene46941	MS.gene021965	PPI
MS.gene46941	MS.gene018196	PPI
MS.gene46941	MS.gene24070	PPI
MS.gene46941	MS.gene83772	PPI
MS.gene46941	MS.gene73261	PPI
MS.gene46941	MS.gene059736	PPI
MS.gene46941	MS.gene85538	PPI
MS.gene46941	MS.gene26844	PPI
MS.gene46941	MS.gene64178	PPI
MS.gene46941	MS.gene055546	PPI
MS.gene46941	MS.gene96174	PPI
MS.gene46941	MS.gene074257	PPI
MS.gene46941	MS.gene04749	PPI
MS.gene46941	MS.gene073573	PPI
MS.gene46941	MS.gene28718	PPI
MS.gene46941	MS.gene44144	PPI
MS.gene46941	MS.gene060718	PPI
MS.gene46941	MS.gene63743	PPI
MS.gene46941	MS.gene016102	PPI
MS.gene46941	MS.gene48477	PPI
MS.gene46941	MS.gene055223	PPI
MS.gene46941	MS.gene068629	PPI
MS.gene46941	MS.gene08106	PPI
MS.gene46941	MS.gene004417	PPI
MS.gene46941	MS.gene009781	PPI
MS.gene46941	MS.gene019177	PPI
MS.gene46941	MS.gene031967	PPI
MS.gene46941	MS.gene05436	PPI
MS.gene46941	MS.gene21066	PPI
MS.gene46941	MS.gene009213	PPI
MS.gene46941	MS.gene98127	PPI
MS.gene46941	MS.gene003264	PPI
MS.gene46941	MS.gene054652	PPI
MS.gene42903	MS.gene46941	PPI
MS.gene46941	MS.gene000634	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46941.t1	MTR_6g053790	58.431	255	62	3	63	317	35	245	4.04e-85	259
MS.gene46941.t1	MTR_6g033215	83.465	127	21	0	1	127	169	295	7.53e-73	227
MS.gene46941.t1	MTR_8g468010	68.254	63	20	0	42	104	1	63	1.38e-26	102
MS.gene46941.t1	MTR_1g032270	59.459	74	30	0	25	98	1	74	3.45e-24	96.7
MS.gene46941.t1	MTR_3g024240	34.167	120	77	1	9	126	55	174	1.93e-18	82.0
MS.gene46941.t1	MTR_6g053230	38.636	88	54	0	26	113	82	169	1.53e-17	83.6
MS.gene46941.t1	MTR_4g075740	56.944	72	23	1	1	72	79	142	1.11e-16	76.6
MS.gene46941.t1	MTR_0010s0370	33.333	102	68	0	3	104	76	177	1.85e-16	76.6
MS.gene46941.t1	MTR_0010s0350	33.333	102	68	0	3	104	76	177	1.85e-16	76.6
MS.gene46941.t1	MTR_3g041640	69.048	42	13	0	42	83	1	42	1.69e-14	70.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46941.t1	AT5G18636	24.832	149	106	2	9	155	87	231	2.19e-11	64.7
MS.gene46941.t1	AT5G25200	24.832	149	106	2	9	155	87	231	3.14e-11	64.3
MS.gene46941.t1	AT2G17920	24.088	137	102	1	6	142	84	218	5.38e-11	63.2

Find 93 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTTCAAACCATAAAGTTTA+TGG	0.095706	3.2:+38028008	MS.gene46941:CDS
TAATACGCCCATAAACTTTA+TGG	0.115249	3.2:-38028016	None:intergenic
GGTCTTGACCTCCTCCTTCT+TGG	0.197890	3.2:-38028168	None:intergenic
AGAGGCGAGCAAATGGATTC+TGG	0.270934	3.2:+38027890	MS.gene46941:CDS
CCAGCTGCCGTTTGGATTCA+TGG	0.273879	3.2:+38027527	MS.gene46941:CDS
TTTGTGGGCTCACCTTCTGC+TGG	0.298321	3.2:-38028333	None:intergenic
GCAACCAGGGACTATGATTA+AGG	0.300805	3.2:-38027410	None:intergenic
CATATCTCTGTTGTATTCAT+TGG	0.308421	3.2:-38027492	None:intergenic
CAATGAATACAACAGAGATA+TGG	0.337355	3.2:+38027493	MS.gene46941:CDS
TTTCAAACCATAAAGTTTAT+GGG	0.340671	3.2:+38028009	MS.gene46941:CDS
TGTTTCGTTTGTGGTGCTAT+AGG	0.349911	3.2:+38027756	MS.gene46941:CDS
TCCGATGTGGCTTCCGACTA+AGG	0.397122	3.2:-38027565	None:intergenic
TGCTCCGAATCTCACAAAAT+CGG	0.409314	3.2:+38028205	MS.gene46941:CDS
ATGGTCCAGCTTTATTCAAA+AGG	0.430296	3.2:+38027372	MS.gene46941:CDS
AAAATACACCAGCTGCCGTT+TGG	0.431209	3.2:+38027519	MS.gene46941:CDS
GGTGGCCGGAGCAAGAATTC+CGG	0.434564	3.2:+38027912	MS.gene46941:CDS
TCTTGAAGAAAGTAGCAGTT+GGG	0.442566	3.2:+38027451	MS.gene46941:CDS
CAACCAGGGACTATGATTAA+GGG	0.442892	3.2:-38027409	None:intergenic
TTGTGGGCTCACCTTCTGCT+GGG	0.444660	3.2:-38028332	None:intergenic
AATGAATACAACAGAGATAT+GGG	0.446352	3.2:+38027494	MS.gene46941:CDS
GTCATAAAGAGGCGAGCAAA+TGG	0.461038	3.2:+38027883	MS.gene46941:CDS
TCTTTATGACCACCACCAAC+GGG	0.468390	3.2:-38027870	None:intergenic
GAGGCGAGCAAATGGATTCT+GGG	0.481609	3.2:+38027891	MS.gene46941:CDS
GTATTCATTGGCATCGTCAA+AGG	0.483968	3.2:-38027480	None:intergenic
CCATGAATCCAAACGGCAGC+TGG	0.485271	3.2:-38027527	None:intergenic
TCCTTCCACCTTCCGAGCAC+CGG	0.487329	3.2:-38027931	None:intergenic
CTTGTCATTGAAAGGGAAGA+AGG	0.489185	3.2:+38027687	MS.gene46941:CDS
TCAATGACAATCGATGGTTA+TGG	0.489947	3.2:+38027984	MS.gene46941:CDS
CGGAATTAATGCGGAGTCAA+GGG	0.496180	3.2:+38028043	MS.gene46941:CDS
AACAAGAACTTGTCATTGAA+AGG	0.499416	3.2:+38027679	MS.gene46941:CDS
GCAAATGGATTCTGGGTGGC+CGG	0.500439	3.2:+38027898	MS.gene46941:CDS
GGTACGAGTGGAAATTATTG+TGG	0.502259	3.2:+38027644	MS.gene46941:CDS
CTCTTTATGACCACCACCAA+CGG	0.507334	3.2:-38027871	None:intergenic
ATCTTGAAGAAAGTAGCAGT+TGG	0.507501	3.2:+38027450	MS.gene46941:CDS
CGGAAGCCACATCGGAAAGA+TGG	0.510844	3.2:+38027572	MS.gene46941:CDS
CAAGAATTCCGGTGCTCGGA+AGG	0.513080	3.2:+38027923	MS.gene46941:CDS
TCGGAATTAATGCGGAGTCA+AGG	0.529574	3.2:+38028042	MS.gene46941:CDS
TATTCATTGGCATCGTCAAA+GGG	0.529732	3.2:-38027479	None:intergenic
GAGCACCGGAATTCTTGCTC+CGG	0.532166	3.2:-38027917	None:intergenic
ACAAGAACTTGTCATTGAAA+GGG	0.543055	3.2:+38027680	MS.gene46941:CDS
GATAAAGTCGGTTCCTTAGT+CGG	0.543289	3.2:+38027552	MS.gene46941:CDS
ATGGAATGTCAACGGTCAGA+TGG	0.547624	3.2:+38028086	MS.gene46941:CDS
CGTTGGTGGTGGTCATAAAG+AGG	0.549884	3.2:+38027872	MS.gene46941:CDS
ATAACTATAGTCCGTGGAGG+AGG	0.551384	3.2:+38027613	MS.gene46941:CDS
CATATTATTATCAAGCAACC+AGG	0.551604	3.2:-38027424	None:intergenic
AAACCCTTAATCATAGTCCC+TGG	0.552265	3.2:+38027406	MS.gene46941:CDS
GAGAATAATCCCGTTGGTGG+TGG	0.556804	3.2:+38027861	MS.gene46941:CDS
GTTTATGGGCGTATTAAAGT+CGG	0.557835	3.2:+38028023	MS.gene46941:CDS
AGCCCACAAAATTCAAAGGT+TGG	0.558236	3.2:+38028346	MS.gene46941:CDS
AGAGCTAGAGGCCCAGCAGA+AGG	0.559741	3.2:+38028321	MS.gene46941:CDS
TCCTTAGTCGGAAGCCACAT+CGG	0.564837	3.2:+38027564	MS.gene46941:CDS
TCAAGTTCATGGAATGTCAA+CGG	0.568955	3.2:+38028078	MS.gene46941:CDS
TCCGGTGCTCGGAAGGTGGA+AGG	0.570077	3.2:+38027930	MS.gene46941:CDS
ACAATGAGGAAGGGACACGT+GGG	0.571742	3.2:+38028371	MS.gene46941:CDS
GACAATGAGGAAGGGACACG+TGG	0.572138	3.2:+38028370	MS.gene46941:CDS
GGAGCAAGAATTCCGGTGCT+CGG	0.574693	3.2:+38027919	MS.gene46941:CDS
GAATTCCGGTGCTCGGAAGG+TGG	0.574868	3.2:+38027926	MS.gene46941:CDS
AAGGTTGGTGACAATGAGGA+AGG	0.575031	3.2:+38028361	MS.gene46941:CDS
ATGGAATCGAAATAGTAAGA+TGG	0.575416	3.2:+38028105	MS.gene46941:CDS
GGATTCATGGATGATAAAGT+CGG	0.575680	3.2:+38027540	MS.gene46941:CDS
TTATCATCCATGAATCCAAA+CGG	0.578485	3.2:-38027534	None:intergenic
CCCACTGAAAATACTAGCGG+TGG	0.580189	3.2:+38028143	MS.gene46941:CDS
TCAAATAAATCAAGTGTTAG+CGG	0.588153	3.2:+38028229	MS.gene46941:CDS
GTCCGTGGAGGAGGTTCATG+AGG	0.589105	3.2:+38027622	MS.gene46941:CDS
TACTAGCGGTGGGTCCAAGA+AGG	0.591697	3.2:+38028154	MS.gene46941:CDS
GCTGAGAATAATCCCGTTGG+TGG	0.593949	3.2:+38027858	MS.gene46941:CDS
CGGTGGGTCCAAGAAGGAGG+AGG	0.594720	3.2:+38028160	MS.gene46941:CDS
ATGACAAGTTCTTGTTGCAG+CGG	0.597705	3.2:-38027672	None:intergenic
CTTGAAGAAAGTAGCAGTTG+GGG	0.599274	3.2:+38027452	MS.gene46941:CDS
TTCAAAGGTTGGTGACAATG+AGG	0.600100	3.2:+38028357	MS.gene46941:CDS
AAAGATGGTAAAATTTGATG+AGG	0.606235	3.2:+38027587	MS.gene46941:CDS
GTATTCAAATACGAGAAACT+AGG	0.606335	3.2:+38027726	MS.gene46941:CDS
AGTCATTCAATGACAATCGA+TGG	0.610855	3.2:+38027978	MS.gene46941:CDS
GGTGAGCCCACAAAATTCAA+AGG	0.613123	3.2:+38028342	MS.gene46941:CDS
GTGGAAATTGATAGAGCTAG+AGG	0.615767	3.2:+38028309	MS.gene46941:CDS
GAATCGAAATAGTAAGATGG+TGG	0.617666	3.2:+38028108	MS.gene46941:CDS
ACCCTCATGAACCTCCTCCA+CGG	0.618189	3.2:-38027624	None:intergenic
ATAAATCAAGTGTTAGCGGA+AGG	0.618928	3.2:+38028233	MS.gene46941:CDS
TAGCGGTGGGTCCAAGAAGG+AGG	0.619245	3.2:+38028157	MS.gene46941:CDS
GAGGTTCATGAGGGTACGAG+TGG	0.622129	3.2:+38027632	MS.gene46941:CDS
CGTGCTGAGAATAATCCCGT+TGG	0.628724	3.2:+38027855	MS.gene46941:CDS
CAATGAGGAAGGGACACGTG+GGG	0.636234	3.2:+38028372	MS.gene46941:CDS
AATGAGGAAGGGACACGTGG+GGG	0.642630	3.2:+38028373	MS.gene46941:CDS
AGGTTGGTGACAATGAGGAA+GGG	0.644636	3.2:+38028362	MS.gene46941:CDS
AGGAAAATAACTATAGTCCG+TGG	0.645310	3.2:+38027607	MS.gene46941:CDS
CCACTGAAAATACTAGCGGT+GGG	0.669348	3.2:+38028144	MS.gene46941:CDS
CAACGGGATTATTCTCAGCA+CGG	0.670355	3.2:-38027854	None:intergenic
TCCGTGGAGGAGGTTCATGA+GGG	0.672770	3.2:+38027623	MS.gene46941:CDS
ATATTATTATCAAGCAACCA+GGG	0.693356	3.2:-38027423	None:intergenic
AAAATAACTATAGTCCGTGG+AGG	0.694750	3.2:+38027610	MS.gene46941:CDS
TATTAAAGTCGGAATTAATG+CGG	0.706577	3.2:+38028034	MS.gene46941:CDS
GCGAGCAAATGGATTCTGGG+TGG	0.711165	3.2:+38027894	MS.gene46941:CDS
GATCCCACTGAAAATACTAG+CGG	0.713228	3.2:+38028140	MS.gene46941:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTTCAAACCATAAAGTTTA+TGG	+	chr3.2:38028008-38028027	MS.gene46941:CDS	20.0%
!!	TTTCAAACCATAAAGTTTAT+GGG	+	chr3.2:38028009-38028028	MS.gene46941:CDS	20.0%
!!!	ACTATTTTGATTGTCATTAA+TGG	-	chr3.2:38027961-38027980	None:intergenic	20.0%
!!!	ATTAACTTTTTTCAAGTTCA+TGG	+	chr3.2:38028067-38028086	MS.gene46941:CDS	20.0%
!	AAAGATGGTAAAATTTGATG+AGG	+	chr3.2:38027587-38027606	MS.gene46941:CDS	25.0%
!	AATGAATACAACAGAGATAT+GGG	+	chr3.2:38027494-38027513	MS.gene46941:CDS	25.0%
!	ATATTATTATCAAGCAACCA+GGG	-	chr3.2:38027426-38027445	None:intergenic	25.0%
!	TATTAAAGTCGGAATTAATG+CGG	+	chr3.2:38028034-38028053	MS.gene46941:CDS	25.0%
!	TCAAATAAATCAAGTGTTAG+CGG	+	chr3.2:38028229-38028248	MS.gene46941:CDS	25.0%
!!!	AATTTTAGTATGCAAATGGT+GGG	+	chr3.2:38028272-38028291	MS.gene46941:intron	25.0%
!!!	GATGAATTTTAGTATGCAAA+TGG	+	chr3.2:38028268-38028287	MS.gene46941:intron	25.0%
	AACAAGAACTTGTCATTGAA+AGG	+	chr3.2:38027679-38027698	MS.gene46941:CDS	30.0%
	ACAAGAACTTGTCATTGAAA+GGG	+	chr3.2:38027680-38027699	MS.gene46941:CDS	30.0%
	ATGGAATCGAAATAGTAAGA+TGG	+	chr3.2:38028105-38028124	MS.gene46941:CDS	30.0%
	CAATGAATACAACAGAGATA+TGG	+	chr3.2:38027493-38027512	MS.gene46941:CDS	30.0%
	CACTGCAAAAAATTTCAGTA+TGG	-	chr3.2:38027782-38027801	None:intergenic	30.0%
	CATATCTCTGTTGTATTCAT+TGG	-	chr3.2:38027495-38027514	None:intergenic	30.0%
	CATATTATTATCAAGCAACC+AGG	-	chr3.2:38027427-38027446	None:intergenic	30.0%
	GTATTCAAATACGAGAAACT+AGG	+	chr3.2:38027726-38027745	MS.gene46941:CDS	30.0%
	TAATACGCCCATAAACTTTA+TGG	-	chr3.2:38028019-38028038	None:intergenic	30.0%
	TACAAGTAGCGAGAAAAAAT+GGG	+	chr3.2:38027821-38027840	MS.gene46941:CDS	30.0%
	TTATCATCCATGAATCCAAA+CGG	-	chr3.2:38027537-38027556	None:intergenic	30.0%
!!	ATTTTAGTATGCAAATGGTG+GGG	+	chr3.2:38028273-38028292	MS.gene46941:intron	30.0%
!!	GAATTTTAGTATGCAAATGG+TGG	+	chr3.2:38028271-38028290	MS.gene46941:intron	30.0%
	AAAATAACTATAGTCCGTGG+AGG	+	chr3.2:38027610-38027629	MS.gene46941:CDS	35.0%
	ACAAGTAGCGAGAAAAAATG+GGG	+	chr3.2:38027822-38027841	MS.gene46941:CDS	35.0%
	AGGAAAATAACTATAGTCCG+TGG	+	chr3.2:38027607-38027626	MS.gene46941:CDS	35.0%
	AGTCATTCAATGACAATCGA+TGG	+	chr3.2:38027978-38027997	MS.gene46941:CDS	35.0%
	ATAAATCAAGTGTTAGCGGA+AGG	+	chr3.2:38028233-38028252	MS.gene46941:CDS	35.0%
	ATCTTGAAGAAAGTAGCAGT+TGG	+	chr3.2:38027450-38027469	MS.gene46941:CDS	35.0%
	CGGAGCAAAAAATTTCTTGT+TGG	-	chr3.2:38028192-38028211	None:intergenic	35.0%
	CTACAAGTAGCGAGAAAAAA+TGG	+	chr3.2:38027820-38027839	MS.gene46941:CDS	35.0%
	GAATCGAAATAGTAAGATGG+TGG	+	chr3.2:38028108-38028127	MS.gene46941:CDS	35.0%
	GGATTCATGGATGATAAAGT+CGG	+	chr3.2:38027540-38027559	MS.gene46941:CDS	35.0%
	GTTTATGGGCGTATTAAAGT+CGG	+	chr3.2:38028023-38028042	MS.gene46941:CDS	35.0%
	TATTCATTGGCATCGTCAAA+GGG	-	chr3.2:38027482-38027501	None:intergenic	35.0%
	TCAAGTTCATGGAATGTCAA+CGG	+	chr3.2:38028078-38028097	MS.gene46941:CDS	35.0%
	TCAATGACAATCGATGGTTA+TGG	+	chr3.2:38027984-38028003	MS.gene46941:CDS	35.0%
	TCTTGAAGAAAGTAGCAGTT+GGG	+	chr3.2:38027451-38027470	MS.gene46941:CDS	35.0%
!	ATTTTACCATCTTTCCGATG+TGG	-	chr3.2:38027581-38027600	None:intergenic	35.0%
!	CACCAACCTTTGAATTTTGT+GGG	-	chr3.2:38028351-38028370	None:intergenic	35.0%
!	GATCTCCTTTTGAATAAAGC+TGG	-	chr3.2:38027380-38027399	None:intergenic	35.0%
!	TCACCAACCTTTGAATTTTG+TGG	-	chr3.2:38028352-38028371	None:intergenic	35.0%
!	TGATCCGATTTTGTGAGATT+CGG	-	chr3.2:38028212-38028231	None:intergenic	35.0%
!	TTTTAGTATGCAAATGGTGG+GGG	+	chr3.2:38028274-38028293	MS.gene46941:intron	35.0%
!!	ATGGTCCAGCTTTATTCAAA+AGG	+	chr3.2:38027372-38027391	MS.gene46941:CDS	35.0%
!!	GGCAAATTTTGTTTCGTTTG+TGG	+	chr3.2:38027747-38027766	MS.gene46941:CDS	35.0%
	AAACCCTTAATCATAGTCCC+TGG	+	chr3.2:38027406-38027425	MS.gene46941:CDS	40.0%
	AAGTAGCGAGAAAAAATGGG+GGG	+	chr3.2:38027824-38027843	MS.gene46941:CDS	40.0%
	AGCCCACAAAATTCAAAGGT+TGG	+	chr3.2:38028346-38028365	MS.gene46941:CDS	40.0%
	ATGACAAGTTCTTGTTGCAG+CGG	-	chr3.2:38027675-38027694	None:intergenic	40.0%
	CAACCAGGGACTATGATTAA+GGG	-	chr3.2:38027412-38027431	None:intergenic	40.0%
	CAAGTAGCGAGAAAAAATGG+GGG	+	chr3.2:38027823-38027842	MS.gene46941:CDS	40.0%
	CTTGAAGAAAGTAGCAGTTG+GGG	+	chr3.2:38027452-38027471	MS.gene46941:CDS	40.0%
	CTTGTCATTGAAAGGGAAGA+AGG	+	chr3.2:38027687-38027706	MS.gene46941:CDS	40.0%
	GATCCCACTGAAAATACTAG+CGG	+	chr3.2:38028140-38028159	MS.gene46941:CDS	40.0%
	GGTACGAGTGGAAATTATTG+TGG	+	chr3.2:38027644-38027663	MS.gene46941:CDS	40.0%
	GTATTCATTGGCATCGTCAA+AGG	-	chr3.2:38027483-38027502	None:intergenic	40.0%
	GTGGAAATTGATAGAGCTAG+AGG	+	chr3.2:38028309-38028328	MS.gene46941:CDS	40.0%
	TGCTCCGAATCTCACAAAAT+CGG	+	chr3.2:38028205-38028224	MS.gene46941:CDS	40.0%
!	GATAAAGTCGGTTCCTTAGT+CGG	+	chr3.2:38027552-38027571	MS.gene46941:CDS	40.0%
!	TAGCGGAAGGTATGATAATG+AGG	+	chr3.2:38028246-38028265	MS.gene46941:intron	40.0%
!!	TGTTTCGTTTGTGGTGCTAT+AGG	+	chr3.2:38027756-38027775	MS.gene46941:CDS	40.0%
!!	TTCAAAGGTTGGTGACAATG+AGG	+	chr3.2:38028357-38028376	MS.gene46941:CDS	40.0%
	AAAATACACCAGCTGCCGTT+TGG	+	chr3.2:38027519-38027538	MS.gene46941:CDS	45.0%
	ATAACTATAGTCCGTGGAGG+AGG	+	chr3.2:38027613-38027632	MS.gene46941:CDS	45.0%
	ATGGAATGTCAACGGTCAGA+TGG	+	chr3.2:38028086-38028105	MS.gene46941:CDS	45.0%
	CAACGGGATTATTCTCAGCA+CGG	-	chr3.2:38027857-38027876	None:intergenic	45.0%
	CCACTGAAAATACTAGCGGT+GGG	+	chr3.2:38028144-38028163	MS.gene46941:CDS	45.0%
	CGGAATTAATGCGGAGTCAA+GGG	+	chr3.2:38028043-38028062	MS.gene46941:CDS	45.0%
	CTCTTTATGACCACCACCAA+CGG	-	chr3.2:38027874-38027893	None:intergenic	45.0%
	GCAACCAGGGACTATGATTA+AGG	-	chr3.2:38027413-38027432	None:intergenic	45.0%
	GGTGAGCCCACAAAATTCAA+AGG	+	chr3.2:38028342-38028361	MS.gene46941:CDS	45.0%
	GTCATAAAGAGGCGAGCAAA+TGG	+	chr3.2:38027883-38027902	MS.gene46941:CDS	45.0%
	TCGGAATTAATGCGGAGTCA+AGG	+	chr3.2:38028042-38028061	MS.gene46941:CDS	45.0%
	TCTTTATGACCACCACCAAC+GGG	-	chr3.2:38027873-38027892	None:intergenic	45.0%
!	CCACCGCTAGTATTTTCAGT+GGG	-	chr3.2:38028146-38028165	None:intergenic	45.0%
!!	AAGGTTGGTGACAATGAGGA+AGG	+	chr3.2:38028361-38028380	MS.gene46941:CDS	45.0%
!!	AGGTTGGTGACAATGAGGAA+GGG	+	chr3.2:38028362-38028381	MS.gene46941:CDS	45.0%
	ACAATGAGGAAGGGACACGT+GGG	+	chr3.2:38028371-38028390	MS.gene46941:CDS	50.0%
	CCCACTGAAAATACTAGCGG+TGG	+	chr3.2:38028143-38028162	MS.gene46941:CDS	50.0%
	CGTGCTGAGAATAATCCCGT+TGG	+	chr3.2:38027855-38027874	MS.gene46941:CDS	50.0%
	GCTGAGAATAATCCCGTTGG+TGG	+	chr3.2:38027858-38027877	MS.gene46941:CDS	50.0%
	TCCTTAGTCGGAAGCCACAT+CGG	+	chr3.2:38027564-38027583	MS.gene46941:CDS	50.0%
!	AGAGGCGAGCAAATGGATTC+TGG	+	chr3.2:38027890-38027909	MS.gene46941:CDS	50.0%
!	CCCACCGCTAGTATTTTCAG+TGG	-	chr3.2:38028147-38028166	None:intergenic	50.0%
!	GAGAATAATCCCGTTGGTGG+TGG	+	chr3.2:38027861-38027880	MS.gene46941:CDS	50.0%
!	GAGGCGAGCAAATGGATTCT+GGG	+	chr3.2:38027891-38027910	MS.gene46941:CDS	50.0%
!!	CGTTGGTGGTGGTCATAAAG+AGG	+	chr3.2:38027872-38027891	MS.gene46941:CDS	50.0%
	AATGAGGAAGGGACACGTGG+GGG	+	chr3.2:38028373-38028392	MS.gene46941:CDS	55.0%
	ACCCTCATGAACCTCCTCCA+CGG	-	chr3.2:38027627-38027646	None:intergenic	55.0%
	CAAGAATTCCGGTGCTCGGA+AGG	+	chr3.2:38027923-38027942	MS.gene46941:CDS	55.0%
	CAATGAGGAAGGGACACGTG+GGG	+	chr3.2:38028372-38028391	MS.gene46941:CDS	55.0%
	CCATGAATCCAAACGGCAGC+TGG	-	chr3.2:38027530-38027549	None:intergenic	55.0%
	CGGAAGCCACATCGGAAAGA+TGG	+	chr3.2:38027572-38027591	MS.gene46941:CDS	55.0%
	GACAATGAGGAAGGGACACG+TGG	+	chr3.2:38028370-38028389	MS.gene46941:CDS	55.0%
	GGAGCAAGAATTCCGGTGCT+CGG	+	chr3.2:38027919-38027938	MS.gene46941:CDS	55.0%
	GGTCTTGACCTCCTCCTTCT+TGG	-	chr3.2:38028171-38028190	None:intergenic	55.0%
	TACTAGCGGTGGGTCCAAGA+AGG	+	chr3.2:38028154-38028173	MS.gene46941:CDS	55.0%
	TCCGATGTGGCTTCCGACTA+AGG	-	chr3.2:38027568-38027587	None:intergenic	55.0%
	TCCGTGGAGGAGGTTCATGA+GGG	+	chr3.2:38027623-38027642	MS.gene46941:CDS	55.0%
	TTGTGGGCTCACCTTCTGCT+GGG	-	chr3.2:38028335-38028354	None:intergenic	55.0%
	TTTGTGGGCTCACCTTCTGC+TGG	-	chr3.2:38028336-38028355	None:intergenic	55.0%
!	CCAGCTGCCGTTTGGATTCA+TGG	+	chr3.2:38027527-38027546	MS.gene46941:CDS	55.0%
!	GAGGTTCATGAGGGTACGAG+TGG	+	chr3.2:38027632-38027651	MS.gene46941:CDS	55.0%
!	GCAAATGGATTCTGGGTGGC+CGG	+	chr3.2:38027898-38027917	MS.gene46941:CDS	55.0%
!	GCGAGCAAATGGATTCTGGG+TGG	+	chr3.2:38027894-38027913	MS.gene46941:CDS	55.0%
!!	GAGCACCGGAATTCTTGCTC+CGG	-	chr3.2:38027920-38027939	None:intergenic	55.0%
	AGAGCTAGAGGCCCAGCAGA+AGG	+	chr3.2:38028321-38028340	MS.gene46941:CDS	60.0%
	GAATTCCGGTGCTCGGAAGG+TGG	+	chr3.2:38027926-38027945	MS.gene46941:CDS	60.0%
	GGTGGCCGGAGCAAGAATTC+CGG	+	chr3.2:38027912-38027931	MS.gene46941:CDS	60.0%
	GTCCGTGGAGGAGGTTCATG+AGG	+	chr3.2:38027622-38027641	MS.gene46941:CDS	60.0%
	TAGCGGTGGGTCCAAGAAGG+AGG	+	chr3.2:38028157-38028176	MS.gene46941:CDS	60.0%
	TCCTTCCACCTTCCGAGCAC+CGG	-	chr3.2:38027934-38027953	None:intergenic	60.0%
!	GTGGGGGTGCAGAAGCAATG+TGG	+	chr3.2:38028290-38028309	MS.gene46941:intron	60.0%
	CGGTGGGTCCAAGAAGGAGG+AGG	+	chr3.2:38028160-38028179	MS.gene46941:CDS	65.0%
	TCCGGTGCTCGGAAGGTGGA+AGG	+	chr3.2:38027930-38027949	MS.gene46941:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	38027372	38028400	38027372	ID=MS.gene46941
chr3.2	mRNA	38027372	38028400	38027372	ID=MS.gene46941.t1;Parent=MS.gene46941
chr3.2	exon	38027372	38028254	38027372	ID=MS.gene46941.t1.exon1;Parent=MS.gene46941.t1
chr3.2	CDS	38027372	38028254	38027372	ID=cds.MS.gene46941.t1;Parent=MS.gene46941.t1
chr3.2	exon	38028302	38028400	38028302	ID=MS.gene46941.t1.exon2;Parent=MS.gene46941.t1
chr3.2	CDS	38028302	38028400	38028302	ID=cds.MS.gene46941.t1;Parent=MS.gene46941.t1

Gene Sequence

>MS.gene46941

ATGGTCCAGCTTTATTCAAAAGGAGATCTTGTTAAAACCCTTAATCATAGTCCCTGGTTGCTTGATAATAATATGATTATCTTGAAGAAAGTAGCAGTTGGGGAGAACCCTTTGACGATGCCAATGAATACAACAGAGATATGGGCTAAAATACACCAGCTGCCGTTTGGATTCATGGATGATAAAGTCGGTTCCTTAGTCGGAAGCCACATCGGAAAGATGGTAAAATTTGATGAGGAAAATAACTATAGTCCGTGGAGGAGGTTCATGAGGGTACGAGTGGAAATTATTGTGGAAGAGCCGCTGCAACAAGAACTTGTCATTGAAAGGGAAGAAGGTGAGAATATAAAACTTGTATTCAAATACGAGAAACTAGGCAAATTTTGTTTCGTTTGTGGTGCTATAGGCCATACTGAAATTTTTTGCAGTGATAAGTTTGAGTTCAGCTCTACAAGTAGCGAGAAAAAATGGGGGGCTTACTTCCGTGCTGAGAATAATCCCGTTGGTGGTGGTCATAAAGAGGCGAGCAAATGGATTCTGGGTGGCCGGAGCAAGAATTCCGGTGCTCGGAAGGTGGAAGGAACATCCATTAATGACAATCAAAATAGTCATTCAATGACAATCGATGGTTATGGAATTTCAAACCATAAAGTTTATGGGCGTATTAAAGTCGGAATTAATGCGGAGTCAAGGGAATTAACTTTTTTCAAGTTCATGGAATGTCAACGGTCAGATGGAATCGAAATAGTAAGATGGTGGACAGAAATTGATCCCACTGAAAATACTAGCGGTGGGTCCAAGAAGGAGGAGGTCAAGACCAACAAGAAATTTTTTGCTCCGAATCTCACAAAATCGGATCAAATAAATCAAGTGTTAGCGGAAGGTATGATAATGAGGATGAATTTTAGTATGCAAATGGTGGGGGTGCAGAAGCAATGTGGAAATTGATAGAGCTAGAGGCCCAGCAGAAGGTGAGCCCACAAAATTCAAAGGTTGGTGACAATGAGGAAGGGACACGTGGGGGCAAAG

Protein sequence

>MS.gene46941.t1

MVQLYSKGDLVKTLNHSPWLLDNNMIILKKVAVGENPLTMPMNTTEIWAKIHQLPFGFMDDKVGSLVGSHIGKMVKFDEENNYSPWRRFMRVRVEIIVEEPLQQELVIEREEGENIKLVFKYEKLGKFCFVCGAIGHTEIFCSDKFEFSSTSSEKKWGAYFRAENNPVGGGHKEASKWILGGRSKNSGARKVEGTSINDNQNSHSMTIDGYGISNHKVYGRIKVGINAESRELTFFKFMECQRSDGIEIVRWWTEIDPTENTSGGSKKEEVKTNKKFFAPNLTKSDQINQVLAEEAMWKLIELEAQQKVSPQNSKVGDNEEGTRGGK