AlfalfaGEDB | MS.gene66650

M. sativa cultivar XinJiangDaYe / MS.gene66650

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF14111.9 PF14392.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66650.t1	XP_024630605.1	47.5	255	126	2	1	255	67	313	2.60E-60	242.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66650.t1	A0A2K3L2W5	60.1	148	58	1	4	151	225	371	5.2e-47	197.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene66650	MS.gene010890	PPI
MS.gene66650	MS.gene84790	PPI
MS.gene073582	MS.gene66650	PPI
MS.gene058889	MS.gene66650	PPI
MS.gene98616	MS.gene66650	PPI
MS.gene40828	MS.gene66650	PPI
MS.gene042027	MS.gene66650	PPI
MS.gene69490	MS.gene66650	PPI
MS.gene66650	MS.gene060788	PPI
MS.gene015248	MS.gene66650	PPI
MS.gene66650	MS.gene41643	PPI
MS.gene66650	MS.gene77990	PPI
MS.gene66650	MS.gene062511	PPI
MS.gene80362	MS.gene66650	PPI
MS.gene66650	MS.gene027994	PPI
MS.gene44083	MS.gene66650	PPI
MS.gene013193	MS.gene66650	PPI
MS.gene04970	MS.gene66650	PPI
MS.gene66650	MS.gene007022	PPI
MS.gene08106	MS.gene66650	PPI
MS.gene66650	MS.gene69584	PPI
MS.gene66650	MS.gene52349	PPI
MS.gene66650	MS.gene021647	PPI
MS.gene66650	MS.gene46353	PPI
MS.gene23521	MS.gene66650	PPI
MS.gene66650	MS.gene61651	PPI
MS.gene87529	MS.gene66650	PPI
MS.gene024405	MS.gene66650	PPI
MS.gene012748	MS.gene66650	PPI
MS.gene04134	MS.gene66650	PPI
MS.gene83979	MS.gene66650	PPI
MS.gene062067	MS.gene66650	PPI
MS.gene66650	MS.gene88393	PPI
MS.gene66650	MS.gene054508	PPI
MS.gene66650	MS.gene95960	PPI
MS.gene66650	MS.gene053373	PPI
MS.gene57044	MS.gene66650	PPI
MS.gene049610	MS.gene66650	PPI
MS.gene66650	MS.gene63150	PPI
MS.gene017586	MS.gene66650	PPI
MS.gene038676	MS.gene66650	PPI
MS.gene71637	MS.gene66650	PPI
MS.gene66650	MS.gene072852	PPI
MS.gene042651	MS.gene66650	PPI
MS.gene66650	MS.gene65474	PPI
MS.gene66650	MS.gene025401	PPI
MS.gene05576	MS.gene66650	PPI
MS.gene66650	MS.gene015093	PPI
MS.gene66650	MS.gene06164	PPI
MS.gene66650	MS.gene50392	PPI
MS.gene98467	MS.gene66650	PPI
MS.gene66650	MS.gene22730	PPI
MS.gene66650	MS.gene032299	PPI
MS.gene66650	MS.gene017586	PPI
MS.gene037049	MS.gene66650	PPI
MS.gene034643	MS.gene66650	PPI
MS.gene66650	MS.gene037634	PPI
MS.gene66650	MS.gene057828	PPI
MS.gene66650	MS.gene08606	PPI
MS.gene64130	MS.gene66650	PPI
MS.gene66650	MS.gene000640	PPI
MS.gene66650	MS.gene09517	PPI
MS.gene66650	MS.gene98756	PPI
MS.gene66650	MS.gene87845	PPI
MS.gene071784	MS.gene66650	PPI
MS.gene66650	MS.gene62249	PPI
MS.gene061579	MS.gene66650	PPI
MS.gene76420	MS.gene66650	PPI
MS.gene071320	MS.gene66650	PPI
MS.gene66650	MS.gene010290	PPI
MS.gene026680	MS.gene66650	PPI
MS.gene26433	MS.gene66650	PPI
MS.gene66650	MS.gene92517	PPI
MS.gene66650	MS.gene044729	PPI
MS.gene042559	MS.gene66650	PPI
MS.gene22200	MS.gene66650	PPI
MS.gene66650	MS.gene60390	PPI
MS.gene66650	MS.gene039692	PPI
MS.gene66650	MS.gene55682	PPI
MS.gene66650	MS.gene002590	PPI
MS.gene26038	MS.gene66650	PPI
MS.gene031967	MS.gene66650	PPI
MS.gene34812	MS.gene66650	PPI
MS.gene02896	MS.gene66650	PPI
MS.gene66650	MS.gene024297	PPI
MS.gene66650	MS.gene059269	PPI
MS.gene063214	MS.gene66650	PPI
MS.gene55682	MS.gene66650	PPI
MS.gene66650	MS.gene057934	PPI
MS.gene66650	MS.gene37537	PPI
MS.gene66650	MS.gene024841	PPI
MS.gene58419	MS.gene66650	PPI
MS.gene66650	MS.gene069786	PPI
MS.gene067340	MS.gene66650	PPI
MS.gene66650	MS.gene42010	PPI
MS.gene66650	MS.gene025158	PPI
MS.gene66650	MS.gene40828	PPI
MS.gene65623	MS.gene66650	PPI
MS.gene66650	MS.gene51799	PPI
MS.gene69495	MS.gene66650	PPI
MS.gene049512	MS.gene66650	PPI
MS.gene29406	MS.gene66650	PPI
MS.gene038623	MS.gene66650	PPI
MS.gene86275	MS.gene66650	PPI
MS.gene05357	MS.gene66650	PPI
MS.gene032311	MS.gene66650	PPI
MS.gene66650	MS.gene40469	PPI
MS.gene66650	MS.gene09023	PPI
MS.gene66650	MS.gene025987	PPI
MS.gene86849	MS.gene66650	PPI
MS.gene072852	MS.gene66650	PPI
MS.gene66650	MS.gene043140	PPI
MS.gene66650	MS.gene03149	PPI
MS.gene39956	MS.gene66650	PPI
MS.gene021968	MS.gene66650	PPI
MS.gene66650	MS.gene29321	PPI
MS.gene09589	MS.gene66650	PPI
MS.gene66650	MS.gene037049	PPI
MS.gene43393	MS.gene66650	PPI
MS.gene057828	MS.gene66650	PPI
MS.gene66650	MS.gene24278	PPI
MS.gene66650	MS.gene000379	PPI
MS.gene66650	MS.gene34618	PPI
MS.gene66650	MS.gene59460	PPI
MS.gene66650	MS.gene060773	PPI
MS.gene005120	MS.gene66650	PPI
MS.gene66650	MS.gene08713	PPI
MS.gene048072	MS.gene66650	PPI
MS.gene060386	MS.gene66650	PPI
MS.gene71588	MS.gene66650	PPI
MS.gene04749	MS.gene66650	PPI
MS.gene66650	MS.gene24070	PPI
MS.gene05436	MS.gene66650	PPI
MS.gene059736	MS.gene66650	PPI
MS.gene66650	MS.gene85538	PPI
MS.gene70932	MS.gene66650	PPI
MS.gene66650	MS.gene26844	PPI
MS.gene66650	MS.gene64178	PPI
MS.gene66650	MS.gene074257	PPI
MS.gene42903	MS.gene66650	PPI
MS.gene81712	MS.gene66650	PPI
MS.gene66650	MS.gene073573	PPI
MS.gene021965	MS.gene66650	PPI
MS.gene055683	MS.gene66650	PPI
MS.gene042614	MS.gene66650	PPI
MS.gene41643	MS.gene66650	PPI
MS.gene66650	MS.gene44144	PPI
MS.gene26844	MS.gene66650	PPI
MS.gene021555	MS.gene66650	PPI
MS.gene66650	MS.gene060718	PPI
MS.gene048747	MS.gene66650	PPI
MS.gene021647	MS.gene66650	PPI
MS.gene66650	MS.gene027169	PPI
MS.gene66650	MS.gene004417	PPI
MS.gene66650	MS.gene019177	PPI
MS.gene009121	MS.gene66650	PPI
MS.gene94654	MS.gene66650	PPI
MS.gene51804	MS.gene66650	PPI
MS.gene36069	MS.gene66650	PPI
MS.gene66650	MS.gene055560	PPI
MS.gene66650	MS.gene009213	PPI
MS.gene66650	MS.gene98127	PPI
MS.gene97410	MS.gene66650	PPI
MS.gene66650	MS.gene003264	PPI
MS.gene66650	MS.gene054652	PPI
MS.gene83772	MS.gene66650	PPI
MS.gene32415	MS.gene66650	PPI
MS.gene035626	MS.gene66650	PPI
MS.gene008927	MS.gene66650	PPI
MS.gene045614	MS.gene66650	PPI
MS.gene63762	MS.gene66650	PPI
MS.gene66650	MS.gene27329	PPI
MS.gene66650	MS.gene41393	PPI
MS.gene71675	MS.gene66650	PPI
MS.gene30208	MS.gene66650	PPI
MS.gene66650	MS.gene89815	PPI
MS.gene66650	MS.gene016632	PPI
MS.gene66650	MS.gene018474	PPI
MS.gene66650	MS.gene048088	PPI
MS.gene013676	MS.gene66650	PPI
MS.gene66650	MS.gene86868	PPI
MS.gene030090	MS.gene66650	PPI
MS.gene95561	MS.gene66650	PPI
MS.gene96174	MS.gene66650	PPI
MS.gene66650	MS.gene058889	PPI
MS.gene66650	MS.gene96163	PPI
MS.gene018196	MS.gene66650	PPI
MS.gene065627	MS.gene66650	PPI
MS.gene57019	MS.gene66650	PPI
MS.gene018745	MS.gene66650	PPI
MS.gene65546	MS.gene66650	PPI
MS.gene03936	MS.gene66650	PPI
MS.gene66650	MS.gene34463	PPI
MS.gene038098	MS.gene66650	PPI
MS.gene60059	MS.gene66650	PPI
MS.gene66650	MS.gene61499	PPI
MS.gene66650	MS.gene51804	PPI
MS.gene34197	MS.gene66650	PPI
MS.gene28718	MS.gene66650	PPI
MS.gene055560	MS.gene66650	PPI
MS.gene008275	MS.gene66650	PPI
MS.gene66650	MS.gene019165	PPI
MS.gene66650	MS.gene81194	PPI
MS.gene038757	MS.gene66650	PPI
MS.gene064966	MS.gene66650	PPI
MS.gene66650	MS.gene038394	PPI
MS.gene66650	MS.gene019001	PPI
MS.gene66650	MS.gene53904	PPI
MS.gene66650	MS.gene73261	PPI
MS.gene66650	MS.gene025675	PPI
MS.gene43924	MS.gene66650	PPI
MS.gene046089	MS.gene66650	PPI
MS.gene047954	MS.gene66650	PPI
MS.gene35175	MS.gene66650	PPI
MS.gene66650	MS.gene055546	PPI
MS.gene036423	MS.gene66650	PPI
MS.gene66650	MS.gene55209	PPI
MS.gene013644	MS.gene66650	PPI
MS.gene72520	MS.gene66650	PPI
MS.gene66650	MS.gene022929	PPI
MS.gene66651	MS.gene66650	PPI
MS.gene96109	MS.gene66650	PPI
MS.gene35202	MS.gene66650	PPI
MS.gene051449	MS.gene66650	PPI
MS.gene66650	MS.gene068629	PPI
MS.gene63743	MS.gene66650	PPI
MS.gene66650	MS.gene009781	PPI
MS.gene66650	MS.gene048342	PPI
MS.gene48477	MS.gene66650	PPI
MS.gene66650	MS.gene069624	PPI
MS.gene045875	MS.gene66650	PPI
MS.gene66650	MS.gene21066	PPI
MS.gene66650	MS.gene013890	PPI
MS.gene30136	MS.gene66650	PPI
MS.gene66650	MS.gene073582	PPI
MS.gene008861	MS.gene66650	PPI
MS.gene61452	MS.gene66650	PPI
MS.gene66650	MS.gene016719	PPI
MS.gene66650	MS.gene028714	PPI
MS.gene016102	MS.gene66650	PPI
MS.gene46941	MS.gene66650	PPI
MS.gene96541	MS.gene66650	PPI
MS.gene66650	MS.gene048706	PPI
MS.gene000634	MS.gene66650	PPI
MS.gene66650	MS.gene69586	PPI
MS.gene66650	MS.gene45083	PPI
MS.gene85295	MS.gene66650	PPI
MS.gene66650	MS.gene049561	PPI
MS.gene66650	MS.gene008658	PPI
MS.gene47792	MS.gene66650	PPI
MS.gene46948	MS.gene66650	PPI
MS.gene98471	MS.gene66650	PPI
MS.gene66650	MS.gene49057	PPI
MS.gene025873	MS.gene66650	PPI
MS.gene012019	MS.gene66650	PPI
MS.gene05358	MS.gene66650	PPI
MS.gene93396	MS.gene66650	PPI
MS.gene66650	MS.gene08708	PPI
MS.gene074257	MS.gene66650	PPI
MS.gene05231	MS.gene66650	PPI
MS.gene66650	MS.gene86275	PPI
MS.gene010656	MS.gene66650	PPI
MS.gene85308	MS.gene66650	PPI
MS.gene000629	MS.gene66650	PPI
MS.gene041264	MS.gene66650	PPI
MS.gene41979	MS.gene66650	PPI
MS.gene66650	MS.gene012889	PPI
MS.gene05319	MS.gene66650	PPI
MS.gene66650	MS.gene000506	PPI
MS.gene56991	MS.gene66650	PPI
MS.gene050679	MS.gene66650	PPI
MS.gene20246	MS.gene66650	PPI
MS.gene055223	MS.gene66650	PPI
MS.gene28545	MS.gene66650	PPI
MS.gene66650	MS.gene028716	PPI
MS.gene66650	MS.gene74639	PPI
MS.gene66650	MS.gene071133	PPI
MS.gene66650	MS.gene60266	PPI
MS.gene66650	MS.gene98467	PPI
MS.gene053747	MS.gene66650	PPI
MS.gene66650	MS.gene013644	PPI
MS.gene66650	MS.gene024522	PPI
MS.gene66650	MS.gene54051	PPI
MS.gene66650	MS.gene22111	PPI
MS.gene65471	MS.gene66650	PPI
MS.gene66650	MS.gene049610	PPI
MS.gene061850	MS.gene66650	PPI
MS.gene66650	MS.gene37955	PPI
MS.gene66650	MS.gene045875	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66650.t1	MTR_3g053920	48.971	243	58	3	1	243	103	279	9.23e-62	196
MS.gene66650.t1	MTR_4g103530	86.957	46	6	0	1	46	49	94	1.49e-22	92.0
MS.gene66650.t1	MTR_6g033215	36.458	96	59	1	4	97	199	294	2.56e-12	65.9
MS.gene66650.t1	MTR_0010s0370	44.928	69	34	2	10	75	110	177	9.01e-11	60.1
MS.gene66650.t1	MTR_0010s0350	44.928	69	34	2	10	75	110	177	9.01e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 58 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTTAGCTAGCACCGCATTC+TGG	0.141973	4.3:-48940888	None:intergenic
AGAAGCCAGCAGATGTATTT+TGG	0.145079	4.3:-48940935	None:intergenic
CCAAGTCATCCTTTGGGGCT+TGG	0.235303	4.3:+48940991	MS.gene66650:CDS
GTTCCAAACCTTTGCGTAAC+TGG	0.267932	4.3:-48940676	None:intergenic
CCTATGCCTTGACCTACTTT+TGG	0.278124	4.3:-48940376	None:intergenic
CCTGCTTCCAAGTCATCCTT+TGG	0.318496	4.3:+48940984	MS.gene66650:CDS
CTGATGATGGCGTCCGCAAT+TGG	0.330887	4.3:+48940638	MS.gene66650:CDS
CTGCTTCCAAGTCATCCTTT+GGG	0.362390	4.3:+48940985	MS.gene66650:CDS
CAAGGCATAGGAAGCTTCTT+AGG	0.376769	4.3:+48940388	MS.gene66650:CDS
CAACCAACGGTTTGTGGCAG+CGG	0.377733	4.3:-48940698	None:intergenic
CAAGTTCACGGTCTGCCTTT+CGG	0.389727	4.3:+48940343	MS.gene66650:CDS
TGATGATGGCGTCCGCAATT+GGG	0.395960	4.3:+48940639	MS.gene66650:CDS
TTTAGCTAGCACCGCATTCT+GGG	0.402038	4.3:-48940887	None:intergenic
AGCGACTCTGACACACATAT+TGG	0.405483	4.3:-48940452	None:intergenic
AAACCAGTTACGCAAAGGTT+TGG	0.415112	4.3:+48940673	MS.gene66650:CDS
TTCGAATTAGATTCTGATGA+TGG	0.422237	4.3:+48940625	MS.gene66650:CDS
TGTCACAGGTGTGGATTGAT+TGG	0.423731	4.3:+48940574	MS.gene66650:CDS
TGCTTCCAAAATACATCTGC+TGG	0.424718	4.3:+48940930	MS.gene66650:CDS
TGGTTCAGTGGGACAAAGCT+AGG	0.443161	4.3:-48940304	None:intergenic
ATCTTGCAACCAACGGTTTG+TGG	0.450416	4.3:-48940704	None:intergenic
CCAAGCCCCAAAGGATGACT+TGG	0.469128	4.3:-48940991	None:intergenic
ACCATGGATCTTATCGCTCC+TGG	0.475299	4.3:+48940274	None:intergenic
CAAGCAGGTGCTGCTTCTGT+TGG	0.476934	4.3:+48940760	MS.gene66650:CDS
ATCTAATGATGACATACAAT+AGG	0.483060	4.3:+48941041	MS.gene66650:CDS
TGTGACATAGAAGCAGGAAT+AGG	0.487822	4.3:-48940727	None:intergenic
CCAAAGGATGACTTGGAAGC+AGG	0.490656	4.3:-48940984	None:intergenic
CAACAGAAGCAGCACCTGCT+TGG	0.492986	4.3:-48940759	None:intergenic
TCATTAGATTCACTTGAAAG+TGG	0.496760	4.3:-48941027	None:intergenic
AGTAACAAAAGCACCGTTTG+TGG	0.497986	4.3:-48940518	None:intergenic
CTGCTGGCTTCTTCTTCCAC+AGG	0.507471	4.3:+48940946	MS.gene66650:CDS
GATGATGGCGTCCGCAATTG+GGG	0.507633	4.3:+48940640	MS.gene66650:CDS
TGGCGAGTCCGTGCCACAAA+CGG	0.511841	4.3:+48940505	MS.gene66650:CDS
CACCTTCAGTAGCTGCAGTT+CGG	0.513939	4.3:-48940783	None:intergenic
TGCTTCCAAGTCATCCTTTG+GGG	0.514970	4.3:+48940986	MS.gene66650:CDS
TCACTTGAAAGTGGAGCAGC+AGG	0.515569	4.3:-48941018	None:intergenic
GGATTCATCCAACCAAAAGT+AGG	0.533518	4.3:+48940364	MS.gene66650:CDS
GCAGGTAAGCCAAGCCCCAA+AGG	0.549880	4.3:-48941000	None:intergenic
GTTTGATGTGACATAGAAGC+AGG	0.552176	4.3:-48940733	None:intergenic
TCATGTCAGCTCCCCAATTG+CGG	0.560990	4.3:-48940651	None:intergenic
GAACCGCTGCCACAAACCGT+TGG	0.569652	4.3:+48940695	MS.gene66650:CDS
AACTGCAGCTACTGAAGGTG+TGG	0.577023	4.3:+48940786	MS.gene66650:CDS
AGAATCTAATTCGAACAACT+CGG	0.580030	4.3:-48940617	None:intergenic
CAAAAGCACCGTTTGTGGCA+CGG	0.590707	4.3:-48940513	None:intergenic
GGTTCAGTGGGACAAAGCTA+GGG	0.592996	4.3:-48940303	None:intergenic
TCACATCAAACTCACCAAGC+AGG	0.593385	4.3:+48940745	MS.gene66650:CDS
GTGCTAGCTAAAGAAGGTAA+AGG	0.593767	4.3:+48940898	MS.gene66650:CDS
GAATCTAATTCGAACAACTC+GGG	0.601829	4.3:-48940616	None:intergenic
ACAAAGCTAGGGACGACACC+AGG	0.602101	4.3:-48940292	None:intergenic
AATGCGGTGCTAGCTAAAGA+AGG	0.603825	4.3:+48940892	MS.gene66650:CDS
GGCCGAACTGCAGCTACTGA+AGG	0.610869	4.3:+48940781	MS.gene66650:CDS
ATCCAACCAAAAGTAGGTCA+AGG	0.617189	4.3:+48940370	MS.gene66650:CDS
CCAAAAGTAGGTCAAGGCAT+AGG	0.620618	4.3:+48940376	MS.gene66650:CDS
ACCAGGAGCGATAAGATCCA+TGG	0.622459	4.3:-48940275	None:intergenic
GCTAGTAGCTGAAGTACCTG+TGG	0.624706	4.3:-48940962	None:intergenic
TGTGCTTGCTGCCCAGAATG+CGG	0.637409	4.3:+48940876	MS.gene66650:CDS
ACATGAAACCAGTTACGCAA+AGG	0.638258	4.3:+48940668	MS.gene66650:CDS
GAATAGGATCTTGCAACCAA+CGG	0.654985	4.3:-48940711	None:intergenic
TTTGGTTGGATGAATCCGAA+AGG	0.672828	4.3:-48940358	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACTTTAAATATGAAAAATT+GGG	+	chr4.3:48940544-48940563	MS.gene66650:CDS	10.0%
!!	TAACTTTAAATATGAAAAAT+TGG	+	chr4.3:48940543-48940562	MS.gene66650:CDS	10.0%
!	AAAAATCAATATGGTTCAGT+GGG	-	chr4.3:48940318-48940337	None:intergenic	25.0%
!!!	ACTGAACCATATTGATTTTT+GGG	+	chr4.3:48940318-48940337	MS.gene66650:CDS	25.0%
	AGAATCTAATTCGAACAACT+CGG	-	chr4.3:48940620-48940639	None:intergenic	30.0%
	CAAAAATCAATATGGTTCAG+TGG	-	chr4.3:48940319-48940338	None:intergenic	30.0%
	CTTGAACCCAAAAATCAATA+TGG	-	chr4.3:48940327-48940346	None:intergenic	30.0%
	TCATTAGATTCACTTGAAAG+TGG	-	chr4.3:48941030-48941049	None:intergenic	30.0%
	TTCGAATTAGATTCTGATGA+TGG	+	chr4.3:48940625-48940644	MS.gene66650:CDS	30.0%
!!!	CACTGAACCATATTGATTTT+TGG	+	chr4.3:48940317-48940336	MS.gene66650:CDS	30.0%
	GAATCTAATTCGAACAACTC+GGG	-	chr4.3:48940619-48940638	None:intergenic	35.0%
!!!	GATTTTTGGGTTCAAGTTCA+CGG	+	chr4.3:48940331-48940350	MS.gene66650:CDS	35.0%
	AAACCAGTTACGCAAAGGTT+TGG	+	chr4.3:48940673-48940692	MS.gene66650:CDS	40.0%
	ACATGAAACCAGTTACGCAA+AGG	+	chr4.3:48940668-48940687	MS.gene66650:CDS	40.0%
	ATCCAACCAAAAGTAGGTCA+AGG	+	chr4.3:48940370-48940389	MS.gene66650:CDS	40.0%
	GAATAGGATCTTGCAACCAA+CGG	-	chr4.3:48940714-48940733	None:intergenic	40.0%
	GGATTCATCCAACCAAAAGT+AGG	+	chr4.3:48940364-48940383	MS.gene66650:CDS	40.0%
	GTGCTAGCTAAAGAAGGTAA+AGG	+	chr4.3:48940898-48940917	MS.gene66650:CDS	40.0%
	GTTTGATGTGACATAGAAGC+AGG	-	chr4.3:48940736-48940755	None:intergenic	40.0%
	TGCTTCCAAAATACATCTGC+TGG	+	chr4.3:48940930-48940949	MS.gene66650:CDS	40.0%
	TGTGACATAGAAGCAGGAAT+AGG	-	chr4.3:48940730-48940749	None:intergenic	40.0%
	TTTGGTTGGATGAATCCGAA+AGG	-	chr4.3:48940361-48940380	None:intergenic	40.0%
!	AATTGGGTGTGTTTTGTCAC+AGG	+	chr4.3:48940560-48940579	MS.gene66650:CDS	40.0%
!	AGAAGCCAGCAGATGTATTT+TGG	-	chr4.3:48940938-48940957	None:intergenic	40.0%
!!	AGTAACAAAAGCACCGTTTG+TGG	-	chr4.3:48940521-48940540	None:intergenic	40.0%
	AGCGACTCTGACACACATAT+TGG	-	chr4.3:48940455-48940474	None:intergenic	45.0%
	ATCTTGCAACCAACGGTTTG+TGG	-	chr4.3:48940707-48940726	None:intergenic	45.0%
	CAAGGCATAGGAAGCTTCTT+AGG	+	chr4.3:48940388-48940407	MS.gene66650:CDS	45.0%
	CCAAAAGTAGGTCAAGGCAT+AGG	+	chr4.3:48940376-48940395	MS.gene66650:CDS	45.0%
	CTGCTTCCAAGTCATCCTTT+GGG	+	chr4.3:48940985-48941004	MS.gene66650:CDS	45.0%
	CTGTCCCACTGAAAAAAGAG+TGG	+	chr4.3:48940485-48940504	MS.gene66650:CDS	45.0%
	GTTCCAAACCTTTGCGTAAC+TGG	-	chr4.3:48940679-48940698	None:intergenic	45.0%
	TCACATCAAACTCACCAAGC+AGG	+	chr4.3:48940745-48940764	MS.gene66650:CDS	45.0%
	TGCTTCCAAGTCATCCTTTG+GGG	+	chr4.3:48940986-48941005	MS.gene66650:CDS	45.0%
	TTTAGCTAGCACCGCATTCT+GGG	-	chr4.3:48940890-48940909	None:intergenic	45.0%
!	AATGCGGTGCTAGCTAAAGA+AGG	+	chr4.3:48940892-48940911	MS.gene66650:CDS	45.0%
!	CCTATGCCTTGACCTACTTT+TGG	-	chr4.3:48940379-48940398	None:intergenic	45.0%
!	TGTCACAGGTGTGGATTGAT+TGG	+	chr4.3:48940574-48940593	MS.gene66650:CDS	45.0%
!!	TGCCTTGACCTACTTTTGGT+TGG	-	chr4.3:48940375-48940394	None:intergenic	45.0%
!!!	ACTCGCCACTCTTTTTTCAG+TGG	-	chr4.3:48940493-48940512	None:intergenic	45.0%
!!!	CTCGCCACTCTTTTTTCAGT+GGG	-	chr4.3:48940492-48940511	None:intergenic	45.0%
	AACTGCAGCTACTGAAGGTG+TGG	+	chr4.3:48940786-48940805	MS.gene66650:CDS	50.0%
	CAAGTTCACGGTCTGCCTTT+CGG	+	chr4.3:48940343-48940362	MS.gene66650:CDS	50.0%
	CACCTTCAGTAGCTGCAGTT+CGG	-	chr4.3:48940786-48940805	None:intergenic	50.0%
	CCTGCTTCCAAGTCATCCTT+TGG	+	chr4.3:48940984-48941003	MS.gene66650:CDS	50.0%
	CTTTAGCTAGCACCGCATTC+TGG	-	chr4.3:48940891-48940910	None:intergenic	50.0%
	GGTTCAGTGGGACAAAGCTA+GGG	-	chr4.3:48940306-48940325	None:intergenic	50.0%
	TCACTTGAAAGTGGAGCAGC+AGG	-	chr4.3:48941021-48941040	None:intergenic	50.0%
	TCATGTCAGCTCCCCAATTG+CGG	-	chr4.3:48940654-48940673	None:intergenic	50.0%
	TGGTTCAGTGGGACAAAGCT+AGG	-	chr4.3:48940307-48940326	None:intergenic	50.0%
!	CCAAAGGATGACTTGGAAGC+AGG	-	chr4.3:48940987-48941006	None:intergenic	50.0%
!	GCTAGTAGCTGAAGTACCTG+TGG	-	chr4.3:48940965-48940984	None:intergenic	50.0%
!	GGTGTGTTTTGTCACAGGTG+TGG	+	chr4.3:48940565-48940584	MS.gene66650:CDS	50.0%
!!	CAAAAGCACCGTTTGTGGCA+CGG	-	chr4.3:48940516-48940535	None:intergenic	50.0%
!!	TGATGATGGCGTCCGCAATT+GGG	+	chr4.3:48940639-48940658	MS.gene66650:CDS	50.0%
	ACAAAGCTAGGGACGACACC+AGG	-	chr4.3:48940295-48940314	None:intergenic	55.0%
	CAACAGAAGCAGCACCTGCT+TGG	-	chr4.3:48940762-48940781	None:intergenic	55.0%
	CAACCAACGGTTTGTGGCAG+CGG	-	chr4.3:48940701-48940720	None:intergenic	55.0%
	CCAAGCCCCAAAGGATGACT+TGG	-	chr4.3:48940994-48941013	None:intergenic	55.0%
!	GATGATGGCGTCCGCAATTG+GGG	+	chr4.3:48940640-48940659	MS.gene66650:CDS	55.0%
!	TGTGCTTGCTGCCCAGAATG+CGG	+	chr4.3:48940876-48940895	MS.gene66650:CDS	55.0%
!!	CAAGCAGGTGCTGCTTCTGT+TGG	+	chr4.3:48940760-48940779	MS.gene66650:CDS	55.0%
!!	CCAAGTCATCCTTTGGGGCT+TGG	+	chr4.3:48940991-48941010	MS.gene66650:CDS	55.0%
!!	CTGATGATGGCGTCCGCAAT+TGG	+	chr4.3:48940638-48940657	MS.gene66650:CDS	55.0%
!!	CTGCTGGCTTCTTCTTCCAC+AGG	+	chr4.3:48940946-48940965	MS.gene66650:CDS	55.0%
	GAACCGCTGCCACAAACCGT+TGG	+	chr4.3:48940695-48940714	MS.gene66650:CDS	60.0%
	GCAGGTAAGCCAAGCCCCAA+AGG	-	chr4.3:48941003-48941022	None:intergenic	60.0%
	GGCCGAACTGCAGCTACTGA+AGG	+	chr4.3:48940781-48940800	MS.gene66650:CDS	60.0%
	TGGCGAGTCCGTGCCACAAA+CGG	+	chr4.3:48940505-48940524	MS.gene66650:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	48940277	48941062	48940277	ID=MS.gene66650
chr4.3	mRNA	48940277	48941062	48940277	ID=MS.gene66650.t1;Parent=MS.gene66650
chr4.3	exon	48940277	48941062	48940277	ID=MS.gene66650.t1.exon1;Parent=MS.gene66650.t1
chr4.3	CDS	48940277	48941062	48940277	ID=cds.MS.gene66650.t1;Parent=MS.gene66650.t1

Gene Sequence

>MS.gene66650

ATGGATCTTATCGCTCCTGGTGTCGTCCCTAGCTTTGTCCCACTGAACCATATTGATTTTTGGGTTCAAGTTCACGGTCTGCCTTTCGGATTCATCCAACCAAAAGTAGGTCAAGGCATAGGAAGCTTCTTAGGCACTTTCAAAGCATATGATAATCGCAACTCAATTCATAGTTCCAATATGTGTGTCAGAGTCGCTATTGTTGTCACTGTCCCACTGAAAAAAGAGTGGCGAGTCCGTGCCACAAACGGTGCTTTTGTTACTGTTAACTTTAAATATGAAAAATTGGGTGTGTTTTGTCACAGGTGTGGATTGATTGGTCATACTGACAAAGTGTGTCCCGAGTTGTTCGAATTAGATTCTGATGATGGCGTCCGCAATTGGGGAGCTGACATGAAACCAGTTACGCAAAGGTTTGGAACCGCTGCCACAAACCGTTGGTTGCAAGATCCTATTCCTGCTTCTATGTCACATCAAACTCACCAAGCAGGTGCTGCTTCTGTTGGCCGAACTGCAGCTACTGAAGGTGTGGAAAATTCTGCAACTTTCAATGATCGTATGCTCACTCTTCAGATGCAACTTACTGCTATGCAACAAGATGTGCTTGCTGCCCAGAATGCGGTGCTAGCTAAAGAAGGTAAAGGTGCAAGTTCTGCTTCCAAAATACATCTGCTGGCTTCTTCTTCCACAGGTACTTCAGCTACTAGCCTGCTTCCAAGTCATCCTTTGGGGCTTGGCTTACCTGCTGCTCCACTTTCAAGTGAATCTAATGATGACATACAATAG

Protein sequence

>MS.gene66650.t1

MDLIAPGVVPSFVPLNHIDFWVQVHGLPFGFIQPKVGQGIGSFLGTFKAYDNRNSIHSSNMCVRVAIVVTVPLKKEWRVRATNGAFVTVNFKYEKLGVFCHRCGLIGHTDKVCPELFELDSDDGVRNWGADMKPVTQRFGTAATNRWLQDPIPASMSHQTHQAGAASVGRTAATEGVENSATFNDRMLTLQMQLTAMQQDVLAAQNAVLAKEGKGASSASKIHLLASSSTGTSATSLLPSHPLGLGLPAAPLSSESNDDIQ