AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039692

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039692.t1 MTR_6g033215 39.267 191 115 1 4 194 105 294 1.15e-48 172
MS.gene039692.t1 MTR_8g463110 39.806 206 121 2 455 658 208 412 1.72e-41 160
MS.gene039692.t1 MTR_4g020630 35.514 214 131 1 431 637 113 326 1.20e-36 144
MS.gene039692.t1 MTR_0010s0370 37.671 146 91 0 25 170 30 175 2.73e-32 124
MS.gene039692.t1 MTR_0010s0350 37.671 146 91 0 25 170 30 175 2.73e-32 124
MS.gene039692.t1 MTR_3g053920 36.364 143 74 2 24 166 31 156 8.85e-27 110
MS.gene039692.t1 MTR_2g061500 40.404 99 59 0 24 122 31 129 7.77e-24 98.2
MS.gene039692.t1 MTR_1g051330 32.934 167 97 2 460 625 366 518 4.86e-23 104
MS.gene039692.t1 MTR_6g053230 32.317 164 75 1 20 183 44 171 6.49e-23 103
MS.gene039692.t1 MTR_2g055450 56.818 88 23 1 455 542 264 336 8.53e-22 99.0
MS.gene039692.t1 MTR_3g024240 39.669 121 71 2 77 195 55 175 3.74e-21 92.0
MS.gene039692.t1 MTR_7g015270 43.689 103 55 2 556 656 93 194 9.95e-20 89.4
MS.gene039692.t1 MTR_4g103530 39.785 93 56 0 48 140 1 93 5.64e-19 85.9
MS.gene039692.t1 MTR_7g011710 33.628 113 72 2 48 158 1 112 9.43e-18 81.3
MS.gene039692.t1 MTR_1g032270 46.479 71 38 0 94 164 2 72 1.08e-17 80.9
MS.gene039692.t1 MTR_6g034215 35.455 110 71 0 458 567 215 324 1.80e-17 84.3
MS.gene039692.t1 MTR_8g468010 51.562 64 31 0 110 173 1 64 2.06e-17 79.7
MS.gene039692.t1 MTR_5g085210 48.649 74 35 1 519 592 1 71 7.38e-17 80.9
MS.gene039692.t1 MTR_2g063055 35.135 111 72 0 485 595 68 178 1.73e-16 78.2
MS.gene039692.t1 MTR_0042s0130 41.489 94 55 0 455 548 247 340 3.31e-16 80.9
MS.gene039692.t1 MTR_1g036720 44.118 68 38 0 29 96 34 101 6.86e-16 74.3
MS.gene039692.t1 MTR_4g020545 27.650 217 98 6 56 265 79 243 8.48e-16 79.0
MS.gene039692.t1 MTR_5g069440 45.161 62 34 0 539 600 81 142 1.42e-14 72.4
MS.gene039692.t1 MTR_7g063500 37.647 85 53 0 507 591 38 122 6.24e-14 69.3
MS.gene039692.t1 MTR_8g019640 28.324 173 74 2 465 636 84 207 9.62e-13 70.9
MS.gene039692.t1 MTR_4g075740 32.222 90 53 2 51 140 61 142 9.62e-12 63.9
MS.gene039692.t1 MTR_3g436680 30.464 151 85 3 470 620 78 208 1.06e-11 68.6
MS.gene039692.t1 MTR_1g100687 33.333 87 57 1 455 540 146 232 8.82e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039692.t1 AT2G17920 26.846 149 107 1 63 211 73 219 2.63e-17 83.6
MS.gene039692.t1 AT3G57587 24.161 149 111 1 63 211 73 219 6.77e-14 74.3
MS.gene039692.t1 AT5G25200 23.118 186 141 1 26 211 36 219 3.18e-13 72.0
MS.gene039692.t1 AT5G18636 23.118 186 141 1 26 211 36 219 3.42e-13 72.0
MS.gene039692.t1 AT5G36228 26.846 149 107 1 63 211 73 219 4.96e-13 71.6
MS.gene039692.t1 AT3G31430 25.275 182 132 1 29 210 134 311 6.28e-13 70.9
MS.gene039692.t1 AT2G02103 23.497 183 138 1 29 211 39 219 1.42e-12 70.5
MS.gene039692.t1 AT2G41590 23.171 164 124 1 48 211 58 219 1.94e-12 69.7
MS.gene039692.t1 AT3G47920 22.819 149 113 1 63 211 2 148 7.05e-12 67.4

Find 179 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAGAATAACTTTGGTTCT+TGG 0.257019 3.3:+10533740 MS.gene039692:CDS
TGCTATGTTTGCGGAAGATT+GGG 0.257893 3.3:+10533889 MS.gene039692:CDS
TGATTGAGTTTATTCATAAA+AGG 0.274357 3.3:-10535558 None:intergenic
ATCACAATTAGCGGCGTCTT+TGG 0.284853 3.3:+10534443 MS.gene039692:CDS
GAATCTCTTGTCTGATGTTT+TGG 0.297515 3.3:-10535620 None:intergenic
AGTGAAGATTGGTAGGGATT+TGG 0.314886 3.3:+10534134 MS.gene039692:CDS
TCTTTCAATCATGCTAAGTT+TGG 0.317064 3.3:+10534108 MS.gene039692:CDS
ACCTCAGAAGCAGTGGAATA+TGG 0.318334 3.3:+10537652 MS.gene039692:intron
TCTCAAAGATGGCAAGATTA+TGG 0.319031 3.3:+10535528 MS.gene039692:CDS
TCCACAACCTGTGCCTAGTT+CGG 0.327400 3.3:+10535443 MS.gene039692:CDS
AGCGGTACCAGCAGAGAAAT+TGG 0.340421 3.3:-10533308 None:intergenic
GTGTCCAGCGGAGTAGTTAT+TGG 0.343416 3.3:-10533613 None:intergenic
ACAAATGCTTTGCGGTTCAT+AGG 0.347105 3.3:-10534298 None:intergenic
GTGCTGCGGATCTATCTAAA+TGG 0.348939 3.3:+10535583 MS.gene039692:CDS
TTGCTATGTTTGCGGAAGAT+TGG 0.353392 3.3:+10533888 MS.gene039692:CDS
CCGGACTGAGCACTTTCAAT+TGG 0.361345 3.3:-10534387 None:intergenic
GACGCCGCTAATTGTGATAT+TGG 0.365025 3.3:-10534438 None:intergenic
TGATTAAAGATGATTTGTTT+TGG 0.365187 3.3:+10535739 MS.gene039692:CDS
TCTTCAAATAAACACCTTGC+TGG 0.368720 3.3:-10534213 None:intergenic
TCAGTACTAACTTTCGGATT+AGG 0.369491 3.3:-10534498 None:intergenic
CCACAACCTGTGCCTAGTTC+GGG 0.372679 3.3:+10535444 MS.gene039692:CDS
GTGATCGCATGGCTCAAGTT+TGG 0.380325 3.3:+10533434 MS.gene039692:CDS
ATTGAAATACCTCACATTAG+AGG 0.386032 3.3:-10535688 None:intergenic
GTTTCAGTTCTTTCATCATA+AGG 0.386843 3.3:+10533507 MS.gene039692:CDS
AAATTCCAACTCTGATTTGC+TGG 0.387140 3.3:+10533354 MS.gene039692:CDS
AACAACGTGCTAAGACCTTT+TGG 0.393218 3.3:+10535763 MS.gene039692:CDS
CGAAACAAAGTGAACTGGTT+TGG 0.396319 3.3:-10533407 None:intergenic
CCGGCGAACATATACCAGTT+TGG 0.403422 3.3:+10537534 MS.gene039692:CDS
CAAGCTCATAACCTCCCCTT+TGG 0.403551 3.3:+10533652 MS.gene039692:CDS
TTAAGCTTGTGAATGGTACT+TGG 0.406597 3.3:+10534178 MS.gene039692:CDS
GCGTCTCCGTGTTGCTCTAA+AGG 0.410744 3.3:+10533774 MS.gene039692:CDS
GAAGTAGCAATCTGCAGAAC+TGG 0.411255 3.3:-10534276 None:intergenic
GTACCATCAGTACTAACTTT+CGG 0.412543 3.3:-10534504 None:intergenic
TGTTGATGAAGGCAAGCGTT+GGG 0.412578 3.3:+10533954 MS.gene039692:CDS
GGCTTGTTGAACCCGAGTTT+AGG 0.416153 3.3:+10535496 MS.gene039692:CDS
TACACTTCGTGCTGAGTTCA+AGG 0.417838 3.3:+10533981 MS.gene039692:CDS
CGGCGAACATATACCAGTTT+GGG 0.422865 3.3:+10537535 MS.gene039692:CDS
TTTGATTGTCGGTCTGAAGA+TGG 0.426676 3.3:+10535882 MS.gene039692:CDS
TGGTTTCATGACGGAATCAA+TGG 0.428806 3.3:+10533672 MS.gene039692:CDS
TGATTTGCTGGACTGCTGCT+TGG 0.428823 3.3:+10533366 MS.gene039692:CDS
GGGTATTCTTCTCGGTAGTC+AGG 0.429308 3.3:+10533693 MS.gene039692:CDS
TGGACTGCTGCTTGGTGGGT+AGG 0.439700 3.3:+10533374 MS.gene039692:CDS
CGGACTGAGCACTTTCAATT+GGG 0.449307 3.3:-10534386 None:intergenic
AAACACCTTGCTGGATCAAA+AGG 0.449751 3.3:-10534204 None:intergenic
GCTCTTTGATAACTTCCCTC+TGG 0.457374 3.3:+10533561 MS.gene039692:CDS
TTGTTCTTTAAGCTTGTGAA+TGG 0.458307 3.3:+10534171 MS.gene039692:CDS
TACCAGTTTGGGATCACCCT+TGG 0.458308 3.3:+10537546 MS.gene039692:CDS
GAATCAATGGGTATTCTTCT+CGG 0.458440 3.3:+10533685 MS.gene039692:CDS
TGATTGAAAGAATGCGCTAC+TGG 0.464247 3.3:-10534096 None:intergenic
CAATATGCTTAGACAGAGGT+TGG 0.466413 3.3:+10535707 MS.gene039692:CDS
CTGGTACCGCTGCTGCCAAT+CGG 0.468289 3.3:+10533320 MS.gene039692:CDS
GAGTTCAAGGGCAGCAGTAC+CGG 0.468900 3.3:+10533994 MS.gene039692:CDS
CGGTGTGGTGCATGATGGCA+TGG 0.469992 3.3:+10534071 MS.gene039692:CDS
ATCCAAGGGTGATCCCAAAC+TGG 0.470772 3.3:-10537548 None:intergenic
CCCGAACTAGGCACAGGTTG+TGG 0.471063 3.3:-10535444 None:intergenic
TCAGCTATACAAATGCTTTG+CGG 0.472175 3.3:-10534306 None:intergenic
ATGCGGCAGCAAGTACTAGA+AGG 0.472874 3.3:+10535820 MS.gene039692:CDS
GAGATTTCAACCTTACGTTC+AGG 0.474706 3.3:-10533460 None:intergenic
TGTCCAGCGGAGTAGTTATT+GGG 0.476936 3.3:-10533612 None:intergenic
ATGGCTTCCAATTTCTCTGC+TGG 0.479309 3.3:+10533301 MS.gene039692:CDS
CGAAACGAAACAAAGTGAAC+TGG 0.479675 3.3:-10533412 None:intergenic
GTGTGATTCGTACTGGTCCT+TGG 0.480218 3.3:+10533539 MS.gene039692:CDS
GTGTTGCAGAAAGTTTCCTT+CGG 0.480508 3.3:+10533583 MS.gene039692:CDS
GCCTCCAATATCACAATTAG+CGG 0.482852 3.3:+10534434 MS.gene039692:CDS
AATTCCCAACTCGTCACAAA+CGG 0.483787 3.3:-10533805 None:intergenic
TTGCTGGACTGCTGCTTGGT+GGG 0.484951 3.3:+10533370 MS.gene039692:CDS
TTCTAGTACTTGCTGCCGCA+TGG 0.487064 3.3:-10535818 None:intergenic
ATAACTTTGGTTCTTGGAGG+AGG 0.487510 3.3:+10533746 MS.gene039692:CDS
CCGGAGGGGTTGACAATCAA+TGG 0.488317 3.3:+10534013 MS.gene039692:CDS
AAGTTTGGTCGAGTGAAGAT+TGG 0.489217 3.3:+10534123 MS.gene039692:CDS
TTGATTGTCGGTCTGAAGAT+GGG 0.494346 3.3:+10535883 MS.gene039692:CDS
TTGGTCGAGTGAAGATTGGT+AGG 0.496039 3.3:+10534127 MS.gene039692:CDS
TATGATGCGGAGAATAACTT+TGG 0.497273 3.3:+10533733 MS.gene039692:CDS
GGTTTCATGACGGAATCAAT+GGG 0.500685 3.3:+10533673 MS.gene039692:CDS
CTAATTGTGATATTGGAGGC+TGG 0.501556 3.3:-10534431 None:intergenic
AAACGACGTTGGCCCGAACT+AGG 0.502564 3.3:-10535456 None:intergenic
TGTCCTGATCTTTATGCGGA+TGG 0.505016 3.3:+10533928 MS.gene039692:CDS
AAGGACCTAAACAACTCAAA+AGG 0.508684 3.3:+10534544 MS.gene039692:CDS
AATCAGAGTTGGAATTTGCA+TGG 0.509396 3.3:-10533348 None:intergenic
CTTCATGATAGTAGGAAGAA+TGG 0.511180 3.3:+10534036 MS.gene039692:CDS
CTCCGTGTTGCTCTAAAGGT+TGG 0.513436 3.3:+10533778 MS.gene039692:CDS
TTTGCTGGACTGCTGCTTGG+TGG 0.516057 3.3:+10533369 MS.gene039692:CDS
ATTTGCATGGGCAGACCGAT+TGG 0.517652 3.3:-10533335 None:intergenic
TAACCATCCGCATAAAGATC+AGG 0.518510 3.3:-10533931 None:intergenic
GAATGGCTCTAATGTTTCAA+AGG 0.518834 3.3:+10534623 MS.gene039692:CDS
AGAATAACTTTGGTTCTTGG+AGG 0.519362 3.3:+10533743 MS.gene039692:CDS
ATTCTTCTCGGTAGTCAGGT+TGG 0.521506 3.3:+10533697 MS.gene039692:CDS
CCAATTGAAAGTGCTCAGTC+CGG 0.522241 3.3:+10534387 MS.gene039692:CDS
ATGGAGCGTGTGATTCGTAC+TGG 0.524060 3.3:+10533532 MS.gene039692:CDS
CCATTGATTGTCAACCCCTC+CGG 0.524266 3.3:-10534013 None:intergenic
CTTCTCGGTAGTCAGGTTGG+TGG 0.527197 3.3:+10533700 MS.gene039692:CDS
AAAGAAGGTGTTGAGATGAA+TGG 0.527653 3.3:+10534606 MS.gene039692:CDS
TAAGCTTGTGAATGGTACTT+GGG 0.528054 3.3:+10534179 MS.gene039692:CDS
ATGACATTGGCACGTGAGCT+TGG 0.529381 3.3:-10535954 None:intergenic
TAATTGTGATATTGGAGGCT+GGG 0.529753 3.3:-10534430 None:intergenic
ATCACCATCACGATACCAAA+AGG 0.532769 3.3:-10535778 None:intergenic
GCAGTCCAGCAAATCAGAGT+TGG 0.536911 3.3:-10533359 None:intergenic
ATCAATGGCTTCATGATAGT+AGG 0.538858 3.3:+10534028 MS.gene039692:CDS
CGCTGGACACCATTGAGATG+TGG 0.540345 3.3:+10533626 MS.gene039692:CDS
CTCGTTTGATTCAAGAAGCT+AGG 0.541067 3.3:+10534349 MS.gene039692:CDS
AGCAAGTACTAGAAGGAAGC+TGG 0.543326 3.3:+10535827 MS.gene039692:CDS
TGAACTCAGCACGAAGTGTA+GGG 0.544941 3.3:-10533978 None:intergenic
TTCAAAGGGTGGTCAAGATA+CGG 0.547351 3.3:+10534638 MS.gene039692:CDS
GATTCCGTCATGAAACCAAA+GGG 0.547874 3.3:-10533667 None:intergenic
TGGTCGAGTGAAGATTGGTA+GGG 0.548057 3.3:+10534128 MS.gene039692:CDS
AATGGCTCTAATGTTTCAAA+GGG 0.548248 3.3:+10534624 MS.gene039692:CDS
ATCAGAGTTGGAATTTGCAT+GGG 0.549395 3.3:-10533347 None:intergenic
TGAGCACTTTCAATTGGGAG+AGG 0.551046 3.3:-10534381 None:intergenic
AGCTTGAACCCACATCTCAA+TGG 0.551904 3.3:-10533635 None:intergenic
AAGATTCATGAAATAATCAC+GGG 0.552864 3.3:-10535919 None:intergenic
AGCGACATTAGAGACAAAAC+CGG 0.553003 3.3:-10534406 None:intergenic
TGACCCAATAACTACTCCGC+TGG 0.557218 3.3:+10533609 MS.gene039692:CDS
TGAACCGTTTGTGACGAGTT+GGG 0.558868 3.3:+10533801 MS.gene039692:CDS
ACCGTTGAGCAGACTAAAGA+AGG 0.558921 3.3:+10534591 MS.gene039692:CDS
GGCTCTAATGTTTCAAAGGG+TGG 0.560268 3.3:+10534627 MS.gene039692:CDS
AAAGATTCATGAAATAATCA+CGG 0.560404 3.3:-10535920 None:intergenic
ATACTGAAGGTTGGTCGAAG+TGG 0.562135 3.3:+10534471 MS.gene039692:CDS
TTCAAGGGCAGCAGTACCGG+AGG 0.564809 3.3:+10533997 MS.gene039692:CDS
TTGAACTCAGCACGAAGTGT+AGG 0.565530 3.3:-10533979 None:intergenic
TGTTTCGTTTCGTGATCGCA+TGG 0.565956 3.3:+10533423 MS.gene039692:CDS
AATCCGAAAGTTAGTACTGA+TGG 0.568115 3.3:+10534501 MS.gene039692:CDS
ATGTTGATGAAGGCAAGCGT+TGG 0.568303 3.3:+10533953 MS.gene039692:CDS
GCTATGTTTGCGGAAGATTG+GGG 0.569143 3.3:+10533890 MS.gene039692:CDS
AGTTTGGAAACCTGAACGTA+AGG 0.570158 3.3:+10533450 MS.gene039692:CDS
GGCAGACCGATTGGCAGCAG+CGG 0.570599 3.3:-10533326 None:intergenic
GCGGATGGTTATGTTGATGA+AGG 0.570647 3.3:+10533943 MS.gene039692:CDS
ACTGGAGCAATGTCACGCAT+TGG 0.571378 3.3:-10534258 None:intergenic
TACTGAAGGTTGGTCGAAGT+GGG 0.574376 3.3:+10534472 MS.gene039692:CDS
CCAAACTGGTATATGTTCGC+CGG 0.575187 3.3:-10537534 None:intergenic
GTGAACCGTTTGTGACGAGT+TGG 0.575407 3.3:+10533800 MS.gene039692:CDS
GCTGGACACCATTGAGATGT+GGG 0.576140 3.3:+10533627 MS.gene039692:CDS
GCCGCTAATTGTGATATTGG+AGG 0.577706 3.3:-10534435 None:intergenic
TGATTACACCTCAGAAGCAG+TGG 0.578317 3.3:+10537645 MS.gene039692:intron
TGGAACCAGGTTGATGACAT+TGG 0.578878 3.3:-10535967 None:intergenic
CCTCCCCTTTGGTTTCATGA+CGG 0.581936 3.3:+10533663 MS.gene039692:CDS
GGAGCAATGTCACGCATTGG+AGG 0.585870 3.3:-10534255 None:intergenic
ACAGTTAAGATTGCCTCTGA+AGG 0.586300 3.3:+10534525 MS.gene039692:CDS
GAACATCTTGAAGATGAGCA+TGG 0.587115 3.3:+10535858 MS.gene039692:CDS
CGTGCAACATTACTGATCCA+AGG 0.587233 3.3:-10537563 None:intergenic
ATTTCAATATGCTTAGACAG+AGG 0.592948 3.3:+10535703 MS.gene039692:CDS
TGAAGCTATTCGTTCACATG+TGG 0.594426 3.3:+10535662 MS.gene039692:CDS
ACAACTCAAAAGGCTTCGCA+TGG 0.595040 3.3:+10534554 MS.gene039692:CDS
GTTCTTTCATCATAAGGACA+TGG 0.595192 3.3:+10533513 MS.gene039692:CDS
GTCTTTGGCACACATACTGA+AGG 0.597638 3.3:+10534458 MS.gene039692:CDS
TTTCAGTGGAGTATAGGCAC+CGG 0.601232 3.3:+10537515 MS.gene039692:intron
AAACTTTCTGCAACACCAGA+GGG 0.602458 3.3:-10533576 None:intergenic
TTGTTCCACTATGAAAAGCT+CGG 0.602650 3.3:+10533859 MS.gene039692:CDS
CGCATTGGAGGAGTCTCTTG+AGG 0.603008 3.3:-10534243 None:intergenic
AGAAACAAAAGACCTAAACT+CGG 0.606549 3.3:-10535508 None:intergenic
TTGGCACACATACTGAAGGT+TGG 0.607886 3.3:+10534462 MS.gene039692:CDS
AGTTGGGAATTCGAAAGAGA+AGG 0.609847 3.3:+10533817 MS.gene039692:CDS
AGTTATTGGGTCATCGCCGA+AGG 0.611381 3.3:-10533599 None:intergenic
GAGTTGTTTAGGTCCTTCAG+AGG 0.613023 3.3:-10534538 None:intergenic
GGTGTGGTGCATGATGGCAT+GGG 0.613488 3.3:+10534072 MS.gene039692:CDS
TGATTCCGTCATGAAACCAA+AGG 0.616197 3.3:-10533668 None:intergenic
ACACTTCGTGCTGAGTTCAA+GGG 0.617513 3.3:+10533982 MS.gene039692:CDS
AGTGACGGTGTGGTGCATGA+TGG 0.621993 3.3:+10534066 MS.gene039692:CDS
CGTTGGCCCGAACTAGGCAC+AGG 0.622116 3.3:-10535450 None:intergenic
ACCTTCTTTAGTCTGCTCAA+CGG 0.622696 3.3:-10534592 None:intergenic
GTTGATGAAGGCAAGCGTTG+GGG 0.622775 3.3:+10533955 MS.gene039692:CDS
GGGAAGTTATCAAAGAGCCA+AGG 0.626900 3.3:-10533556 None:intergenic
TCTCAAAACGAAAACGACGT+TGG 0.627944 3.3:-10535467 None:intergenic
ACGTGCCAATGTCATCAACC+TGG 0.628699 3.3:+10535962 MS.gene039692:CDS
GTGCAACATTACTGATCCAA+GGG 0.633504 3.3:-10537562 None:intergenic
TCAAGGGCAGCAGTACCGGA+GGG 0.642793 3.3:+10533998 MS.gene039692:CDS
AAGAATGGTGGTATGAGTGA+CGG 0.648401 3.3:+10534051 MS.gene039692:CDS
TTGTATAGCTGAAAGTGATG+AGG 0.649352 3.3:+10534317 MS.gene039692:CDS
CAAGGGCAGCAGTACCGGAG+GGG 0.649711 3.3:+10533999 MS.gene039692:CDS
CACCAACCTTTAGAGCAACA+CGG 0.650621 3.3:-10533780 None:intergenic
CACATCTCAATGGTGTCCAG+CGG 0.656910 3.3:-10533625 None:intergenic
GAAACTTTCTGCAACACCAG+AGG 0.658166 3.3:-10533577 None:intergenic
CTACTGTCCTGATCTTTATG+CGG 0.659333 3.3:+10533924 MS.gene039692:CDS
CCGTCATGAAACCAAAGGGG+AGG 0.665053 3.3:-10533663 None:intergenic
GAAACAAAAGACCTAAACTC+GGG 0.665919 3.3:-10535507 None:intergenic
CATGATAGTAGGAAGAATGG+TGG 0.669240 3.3:+10534039 MS.gene039692:CDS
TAAACTCAATCACTGTGCTG+CGG 0.673665 3.3:+10535569 MS.gene039692:CDS
TGGTGGTATGAGTGACGGTG+TGG 0.707010 3.3:+10534056 MS.gene039692:CDS
ATGTGGATGCCTCTAATGTG+AGG 0.748328 3.3:+10535679 MS.gene039692:CDS
ATTCCGTCATGAAACCAAAG+GGG 0.748897 3.3:-10533666 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGTTAAATTCTTTC+TGG + chr3.3:10537204-10537223 MS.gene039692:intron 15.0%
!! AAAGATTCATGAAATAATCA+CGG - chr3.3:10535923-10535942 None:intergenic 20.0%
!! AATCATATGATAGATTAGAT+TGG + chr3.3:10536486-10536505 MS.gene039692:intron 20.0%
!! ATCATATGATAGATTAGATT+GGG + chr3.3:10536487-10536506 MS.gene039692:intron 20.0%
!! TGATTGAGTTTATTCATAAA+AGG - chr3.3:10535561-10535580 None:intergenic 20.0%
!!! TGATTAAAGATGATTTGTTT+TGG + chr3.3:10535739-10535758 MS.gene039692:CDS 20.0%
!!! TTCCATATCAATATGATTTT+GGG - chr3.3:10535002-10535021 None:intergenic 20.0%
! AAATCAGAAACAGTGATAAA+TGG - chr3.3:10537623-10537642 None:intergenic 25.0%
! AAATGTTAAATTCTTTCTGG+TGG + chr3.3:10537207-10537226 MS.gene039692:intron 25.0%
! AAGATTCATGAAATAATCAC+GGG - chr3.3:10535922-10535941 None:intergenic 25.0%
! AATATTACTCTCATTCCAAA+AGG + chr3.3:10536212-10536231 MS.gene039692:intron 25.0%
! AATTTATTAAGGATCGTATC+TGG + chr3.3:10537045-10537064 MS.gene039692:intron 25.0%
! ACGATCCTTAATAAATTTAG+AGG - chr3.3:10537042-10537061 None:intergenic 25.0%
! ATATTAGTAGAATTGACATG+AGG - chr3.3:10536197-10536216 None:intergenic 25.0%
! GCACAAATGATGAATAAATA+AGG - chr3.3:10536674-10536693 None:intergenic 25.0%
! TGCAACCTCTAAATTTATTA+AGG + chr3.3:10537034-10537053 MS.gene039692:intron 25.0%
! TTCTGACTTCTGTAAATTAA+TGG - chr3.3:10536889-10536908 None:intergenic 25.0%
!! AATGTTAAATTCTTTCTGGT+GGG + chr3.3:10537208-10537227 MS.gene039692:intron 25.0%
!! CTTCCATATCAATATGATTT+TGG - chr3.3:10535003-10535022 None:intergenic 25.0%
!! TCTGGAACAAAATAAATTCT+TGG + chr3.3:10537063-10537082 MS.gene039692:intron 25.0%
AAAATACTCATCACATAGGA+AGG - chr3.3:10537152-10537171 None:intergenic 30.0%
AAGGAAAATACTCATCACAT+AGG - chr3.3:10537156-10537175 None:intergenic 30.0%
ACGAGAGATTATGATTCAAA+TGG + chr3.3:10536517-10536536 MS.gene039692:intron 30.0%
AGAAACAAAAGACCTAAACT+CGG - chr3.3:10535511-10535530 None:intergenic 30.0%
AGGTGGGATTAATAATGTAA+AGG + chr3.3:10534695-10534714 MS.gene039692:intron 30.0%
ATCTATCTTAGACAATGCAA+TGG + chr3.3:10536382-10536401 MS.gene039692:intron 30.0%
ATGAATAAATAAGGTGAGAG+GGG - chr3.3:10536665-10536684 None:intergenic 30.0%
ATTGAAATACCTCACATTAG+AGG - chr3.3:10535691-10535710 None:intergenic 30.0%
ATTTCAATATGCTTAGACAG+AGG + chr3.3:10535703-10535722 MS.gene039692:CDS 30.0%
CAAATAAGACTCATTTACCT+AGG - chr3.3:10534743-10534762 None:intergenic 30.0%
CGAGAGATTATGATTCAAAT+GGG + chr3.3:10536518-10536537 MS.gene039692:intron 30.0%
CTCCCAAAATCATATTGATA+TGG + chr3.3:10534997-10535016 MS.gene039692:intron 30.0%
GAGCACAATCTAATAAAAGA+GGG - chr3.3:10535425-10535444 None:intergenic 30.0%
GATGAATAAATAAGGTGAGA+GGG - chr3.3:10536666-10536685 None:intergenic 30.0%
GATTATGCTTTGTGTTGAAA+CGG + chr3.3:10536565-10536584 MS.gene039692:intron 30.0%
GTTTCAGTTCTTTCATCATA+AGG + chr3.3:10533507-10533526 MS.gene039692:CDS 30.0%
TAGCCATATTAAATGCCTTA+AGG - chr3.3:10537325-10537344 None:intergenic 30.0%
TAGTAAGGATGTTGTTATGA+GGG + chr3.3:10534662-10534681 MS.gene039692:intron 30.0%
TCTTTCAATCATGCTAAGTT+TGG + chr3.3:10534108-10534127 MS.gene039692:CDS 30.0%
TGAAATTGTTCACTACATGA+AGG + chr3.3:10536412-10536431 MS.gene039692:intron 30.0%
TGAAGAATTGAAATATGTGC+TGG + chr3.3:10534880-10534899 MS.gene039692:intron 30.0%
TGATGAATAAATAAGGTGAG+AGG - chr3.3:10536667-10536686 None:intergenic 30.0%
TGGGATTAATAATGTAAAGG+CGG + chr3.3:10534698-10534717 MS.gene039692:intron 30.0%
TGTGTATAAAATAGTAGCCA+AGG + chr3.3:10536286-10536305 MS.gene039692:intron 30.0%
TTATTCATCATTTGTGCTGA+AGG + chr3.3:10536677-10536696 MS.gene039692:intron 30.0%
TTCACTTGGTTTAAAAGTCT+TGG + chr3.3:10535285-10535304 MS.gene039692:intron 30.0%
TTGTTCTTTAAGCTTGTGAA+TGG + chr3.3:10534171-10534190 MS.gene039692:CDS 30.0%
TTTAAATTAGGAACTGTGCT+CGG - chr3.3:10534791-10534810 None:intergenic 30.0%
TTTGAATCATAATCTCTCGT+AGG - chr3.3:10536517-10536536 None:intergenic 30.0%
! AGGTTTCTATCAACACTTTT+GGG + chr3.3:10536109-10536128 MS.gene039692:intron 30.0%
! ATGTTAAATTCTTTCTGGTG+GGG + chr3.3:10537209-10537228 MS.gene039692:intron 30.0%
! TAAGGCATTTAATATGGCTA+TGG + chr3.3:10537325-10537344 MS.gene039692:intron 30.0%
! TAATACGAAGTTTTTCCATG+CGG + chr3.3:10535803-10535822 MS.gene039692:CDS 30.0%
!! AAAAGTGTTGATAGAAACCT+GGG - chr3.3:10536109-10536128 None:intergenic 30.0%
!! AATGGCTCTAATGTTTCAAA+GGG + chr3.3:10534624-10534643 MS.gene039692:CDS 30.0%
!! CTAGGTAAATGAGTCTTATT+TGG + chr3.3:10534741-10534760 MS.gene039692:intron 30.0%
AAGAGGAGGTGAGAAATAAT+TGG - chr3.3:10536773-10536792 None:intergenic 35.0%
AAGGACCTAAACAACTCAAA+AGG + chr3.3:10534544-10534563 MS.gene039692:CDS 35.0%
AAGTCACCAATAATACACCA+AGG - chr3.3:10535142-10535161 None:intergenic 35.0%
AATCAGAGTTGGAATTTGCA+TGG - chr3.3:10533351-10533370 None:intergenic 35.0%
AATCTCATTGCTACTACTCT+CGG + chr3.3:10536945-10536964 MS.gene039692:intron 35.0%
ACAACATTACAGAGAGCAAT+AGG - chr3.3:10536269-10536288 None:intergenic 35.0%
ACTACTTATGAAGAAGCTTC+GGG + chr3.3:10536858-10536877 MS.gene039692:intron 35.0%
ATAAGACTCATTTACCTAGG+CGG - chr3.3:10534740-10534759 None:intergenic 35.0%
ATACTACGCCAAACAAAACT+AGG - chr3.3:10537464-10537483 None:intergenic 35.0%
ATCAATGGCTTCATGATAGT+AGG + chr3.3:10534028-10534047 MS.gene039692:CDS 35.0%
ATCAGAGTTGGAATTTGCAT+GGG - chr3.3:10533350-10533369 None:intergenic 35.0%
CTAGTAAGGATGTTGTTATG+AGG + chr3.3:10534661-10534680 MS.gene039692:intron 35.0%
CTATCAGCTGATGAAAAGAA+AGG + chr3.3:10535171-10535190 MS.gene039692:intron 35.0%
CTCAGACTTCAATGAAGTAT+TGG + chr3.3:10536240-10536259 MS.gene039692:intron 35.0%
CTTCATGATAGTAGGAAGAA+TGG + chr3.3:10534036-10534055 MS.gene039692:CDS 35.0%
CTTGGATTACCATCAATGAT+TGG + chr3.3:10536999-10537018 MS.gene039692:intron 35.0%
GAAACAAAAGACCTAAACTC+GGG - chr3.3:10535510-10535529 None:intergenic 35.0%
GAATCAATGGGTATTCTTCT+CGG + chr3.3:10533685-10533704 MS.gene039692:CDS 35.0%
GACTACTTATGAAGAAGCTT+CGG + chr3.3:10536857-10536876 MS.gene039692:intron 35.0%
GCATTTAATATGGCTATGGT+TGG + chr3.3:10537329-10537348 MS.gene039692:intron 35.0%
GCCAAACAAAACTAGGATTA+TGG - chr3.3:10537457-10537476 None:intergenic 35.0%
GGAGCACAATCTAATAAAAG+AGG - chr3.3:10535426-10535445 None:intergenic 35.0%
GGGATTAATAATGTAAAGGC+GGG + chr3.3:10534699-10534718 MS.gene039692:intron 35.0%
GTACCATCAGTACTAACTTT+CGG - chr3.3:10534507-10534526 None:intergenic 35.0%
GTTCTTTCATCATAAGGACA+TGG + chr3.3:10533513-10533532 MS.gene039692:CDS 35.0%
TAAAAGAGGGTAATGATCAG+AGG - chr3.3:10535412-10535431 None:intergenic 35.0%
TAAGCTTGTGAATGGTACTT+GGG + chr3.3:10534179-10534198 MS.gene039692:CDS 35.0%
TAATTGTGATATTGGAGGCT+GGG - chr3.3:10534433-10534452 None:intergenic 35.0%
TAGTAGAATTGACATGAGGT+GGG - chr3.3:10536193-10536212 None:intergenic 35.0%
TATCTTAGACAATGCAATGG+TGG + chr3.3:10536385-10536404 MS.gene039692:intron 35.0%
TATGATGCGGAGAATAACTT+TGG + chr3.3:10533733-10533752 MS.gene039692:CDS 35.0%
TCAGCTATACAAATGCTTTG+CGG - chr3.3:10534309-10534328 None:intergenic 35.0%
TCAGTACTAACTTTCGGATT+AGG - chr3.3:10534501-10534520 None:intergenic 35.0%
TCTCAAAGATGGCAAGATTA+TGG + chr3.3:10535528-10535547 MS.gene039692:CDS 35.0%
TCTTCAAATAAACACCTTGC+TGG - chr3.3:10534216-10534235 None:intergenic 35.0%
TGAATAAATAAGGTGAGAGG+GGG - chr3.3:10536664-10536683 None:intergenic 35.0%
TGGAATATGGAGCTCATTAA+TGG + chr3.3:10537665-10537684 MS.gene039692:CDS 35.0%
TGTTGAAACGGTTGATTACT+CGG + chr3.3:10536577-10536596 MS.gene039692:intron 35.0%
TTAAATTAGGAACTGTGCTC+GGG - chr3.3:10534790-10534809 None:intergenic 35.0%
TTAAGCTTGTGAATGGTACT+TGG + chr3.3:10534178-10534197 MS.gene039692:CDS 35.0%
TTAGTAGAATTGACATGAGG+TGG - chr3.3:10536194-10536213 None:intergenic 35.0%
TTGCATCCGGTTTATAAGTT+CGG - chr3.3:10534823-10534842 None:intergenic 35.0%
TTGGGTACAGGTAAATATCT+TGG + chr3.3:10536981-10537000 MS.gene039692:intron 35.0%
TTGTATAGCTGAAAGTGATG+AGG + chr3.3:10534317-10534336 MS.gene039692:CDS 35.0%
TTGTGGTCAAGAAGTTTATC+AGG + chr3.3:10536136-10536155 MS.gene039692:intron 35.0%
TTGTTCCACTATGAAAAGCT+CGG + chr3.3:10533859-10533878 MS.gene039692:CDS 35.0%
! AAATTCCAACTCTGATTTGC+TGG + chr3.3:10533354-10533373 MS.gene039692:CDS 35.0%
! AATCCGAAAGTTAGTACTGA+TGG + chr3.3:10534501-10534520 MS.gene039692:CDS 35.0%
! ATCTCATTGATTAGTGATCC+CGG - chr3.3:10537182-10537201 None:intergenic 35.0%
! ATGAGTATTTTCCTTCTTCC+GGG + chr3.3:10537161-10537180 MS.gene039692:intron 35.0%
! CAACTTCCTTGGTGTATTAT+TGG + chr3.3:10535133-10535152 MS.gene039692:intron 35.0%
! CAGGTTTCTATCAACACTTT+TGG + chr3.3:10536108-10536127 MS.gene039692:intron 35.0%
! CGGACTAGGTACTTTAAATT+AGG - chr3.3:10534803-10534822 None:intergenic 35.0%
! GAATCTCTTGTCTGATGTTT+TGG - chr3.3:10535623-10535642 None:intergenic 35.0%
! GATGAGTATTTTCCTTCTTC+CGG + chr3.3:10537160-10537179 MS.gene039692:intron 35.0%
! GGACCTTAAGGCATTTAATA+TGG + chr3.3:10537319-10537338 MS.gene039692:intron 35.0%
! TGTTTTTCTGTTGACCGTAT+TGG + chr3.3:10534914-10534933 MS.gene039692:intron 35.0%
! TTTCCTCGAAGTGACTATTT+TGG + chr3.3:10537419-10537438 MS.gene039692:intron 35.0%
!! AAAGAAGGTGTTGAGATGAA+TGG + chr3.3:10534606-10534625 MS.gene039692:CDS 35.0%
!! AGAATAACTTTGGTTCTTGG+AGG + chr3.3:10533743-10533762 MS.gene039692:CDS 35.0%
!! AGACTTCAATGAAGTATTGG+CGG + chr3.3:10536243-10536262 MS.gene039692:intron 35.0%
!! CAAAAGTGTTGATAGAAACC+TGG - chr3.3:10536110-10536129 None:intergenic 35.0%
!! GAATGGCTCTAATGTTTCAA+AGG + chr3.3:10534623-10534642 MS.gene039692:CDS 35.0%
!! GGTAAATGAGTCTTATTTGG+TGG + chr3.3:10534744-10534763 MS.gene039692:intron 35.0%
!! GGTCTTTTGTTTCTCAAAGA+TGG + chr3.3:10535517-10535536 MS.gene039692:CDS 35.0%
!!! ATGAGCATGGTTTTGATTGT+CGG + chr3.3:10535871-10535890 MS.gene039692:CDS 35.0%
!!! GACTATTTTGGAGCTAGTTT+AGG + chr3.3:10537431-10537450 MS.gene039692:intron 35.0%
!!! GCCATAATCCTAGTTTTGTT+TGG + chr3.3:10537453-10537472 MS.gene039692:intron 35.0%
!!! GTTTTCGTTTTGAGAATGCT+TGG + chr3.3:10535475-10535494 MS.gene039692:CDS 35.0%
!!! GTTTTGTTTGGCGTAGTATT+TGG + chr3.3:10537465-10537484 MS.gene039692:intron 35.0%
!!! TGGTTTTGTCAAGTATGATG+CGG + chr3.3:10533720-10533739 MS.gene039692:CDS 35.0%
AAACACCTTGCTGGATCAAA+AGG - chr3.3:10534207-10534226 None:intergenic 40.0%
AAACGAGTGATCAGAGAATC+TGG - chr3.3:10537383-10537402 None:intergenic 40.0%
AAACTTTCTGCAACACCAGA+GGG - chr3.3:10533579-10533598 None:intergenic 40.0%
AACTGCGAACTTCACTTTAG+AGG + chr3.3:10536022-10536041 MS.gene039692:intron 40.0%
AAGAATGGTGGTATGAGTGA+CGG + chr3.3:10534051-10534070 MS.gene039692:CDS 40.0%
AAGTTTGGTCGAGTGAAGAT+TGG + chr3.3:10534123-10534142 MS.gene039692:CDS 40.0%
AATTCCCAACTCGTCACAAA+CGG - chr3.3:10533808-10533827 None:intergenic 40.0%
ACAAATGCTTTGCGGTTCAT+AGG - chr3.3:10534301-10534320 None:intergenic 40.0%
ACAGTTAAGATTGCCTCTGA+AGG + chr3.3:10534525-10534544 MS.gene039692:CDS 40.0%
ACATGAAGGCGAAGACAAAA+GGG + chr3.3:10536426-10536445 MS.gene039692:intron 40.0%
ACCTTCTTTAGTCTGCTCAA+CGG - chr3.3:10534595-10534614 None:intergenic 40.0%
ACGTTGTCATTGTTTCAGAC+AGG - chr3.3:10534850-10534869 None:intergenic 40.0%
AGACACTCAAGCTTTGCATT+AGG - chr3.3:10535378-10535397 None:intergenic 40.0%
AGCGACATTAGAGACAAAAC+CGG - chr3.3:10534409-10534428 None:intergenic 40.0%
AGGATGTTGTTATGAGGGAT+AGG + chr3.3:10534667-10534686 MS.gene039692:intron 40.0%
AGTGAAGATTGGTAGGGATT+TGG + chr3.3:10534134-10534153 MS.gene039692:CDS 40.0%
AGTTGGGAATTCGAAAGAGA+AGG + chr3.3:10533817-10533836 MS.gene039692:CDS 40.0%
AGTTTGGAAACCTGAACGTA+AGG + chr3.3:10533450-10533469 MS.gene039692:CDS 40.0%
ATCACCATCACGATACCAAA+AGG - chr3.3:10535781-10535800 None:intergenic 40.0%
ATGCAAGCAGATAAATGTCC+AGG + chr3.3:10536068-10536087 MS.gene039692:intron 40.0%
ATTCCGTCATGAAACCAAAG+GGG - chr3.3:10533669-10533688 None:intergenic 40.0%
CAATATGCTTAGACAGAGGT+TGG + chr3.3:10535707-10535726 MS.gene039692:CDS 40.0%
CACAATTCAGCAAATTCTCG+AGG + chr3.3:10537233-10537252 MS.gene039692:intron 40.0%
CAGCTGATGAAAAGAAAGGA+AGG + chr3.3:10535175-10535194 MS.gene039692:intron 40.0%
CATGATAGTAGGAAGAATGG+TGG + chr3.3:10534039-10534058 MS.gene039692:CDS 40.0%
CCAAGGAAGTTGAGAAAGAT+TGG - chr3.3:10535125-10535144 None:intergenic 40.0%
CCAATCTTTCTCAACTTCCT+TGG + chr3.3:10535122-10535141 MS.gene039692:intron 40.0%
CCTAGTCCGAACTTATAAAC+CGG + chr3.3:10534814-10534833 MS.gene039692:intron 40.0%
CGAAACAAAGTGAACTGGTT+TGG - chr3.3:10533410-10533429 None:intergenic 40.0%
CGAAACGAAACAAAGTGAAC+TGG - chr3.3:10533415-10533434 None:intergenic 40.0%
CTAATTGTGATATTGGAGGC+TGG - chr3.3:10534434-10534453 None:intergenic 40.0%
CTACTGTCCTGATCTTTATG+CGG + chr3.3:10533924-10533943 MS.gene039692:CDS 40.0%
CTACTTATGAAGAAGCTTCG+GGG + chr3.3:10536859-10536878 MS.gene039692:intron 40.0%
CTCGCTGATATTCATATGGA+TGG + chr3.3:10535255-10535274 MS.gene039692:intron 40.0%
CTCGTTTGATTCAAGAAGCT+AGG + chr3.3:10534349-10534368 MS.gene039692:CDS 40.0%
GAAAACAATCGTCTGCAAAG+AGG - chr3.3:10536790-10536809 None:intergenic 40.0%
GAACATCTTGAAGATGAGCA+TGG + chr3.3:10535858-10535877 MS.gene039692:CDS 40.0%
GAACGCTGCAATAACATTAG+AGG + chr3.3:10536725-10536744 MS.gene039692:intron 40.0%
GAAGTTAATGACTCTCTGAG+GGG + chr3.3:10535019-10535038 MS.gene039692:intron 40.0%
GAGATTTCAACCTTACGTTC+AGG - chr3.3:10533463-10533482 None:intergenic 40.0%
GAGCTATGGCTAATGATAGT+TGG + chr3.3:10535340-10535359 MS.gene039692:intron 40.0%
GATGTTGTTATGAGGGATAG+GGG + chr3.3:10534669-10534688 MS.gene039692:intron 40.0%
GATTACTCGGTCTTGGTTAA+TGG + chr3.3:10536590-10536609 MS.gene039692:intron 40.0%
GATTCCGTCATGAAACCAAA+GGG - chr3.3:10533670-10533689 None:intergenic 40.0%
GCCTCCAATATCACAATTAG+CGG + chr3.3:10534434-10534453 MS.gene039692:CDS 40.0%
GGAAGTTAATGACTCTCTGA+GGG + chr3.3:10535018-10535037 MS.gene039692:intron 40.0%
GGAGAAATTGGATAGAGCTA+TGG + chr3.3:10535326-10535345 MS.gene039692:intron 40.0%
GGATGTTGTTATGAGGGATA+GGG + chr3.3:10534668-10534687 MS.gene039692:intron 40.0%
GTCAAGAAGTTTATCAGGCA+GGG + chr3.3:10536141-10536160 MS.gene039692:intron 40.0%
GTGCAACATTACTGATCCAA+GGG - chr3.3:10537565-10537584 None:intergenic 40.0%
GTGTTGCAGAAAGTTTCCTT+CGG + chr3.3:10533583-10533602 MS.gene039692:CDS 40.0%
TAAACTCAATCACTGTGCTG+CGG + chr3.3:10535569-10535588 MS.gene039692:CDS 40.0%
TAACCATCCGCATAAAGATC+AGG - chr3.3:10533934-10533953 None:intergenic 40.0%
TAAGACTCATTTACCTAGGC+GGG - chr3.3:10534739-10534758 None:intergenic 40.0%
TACATGAAGGCGAAGACAAA+AGG + chr3.3:10536425-10536444 MS.gene039692:intron 40.0%
TATGGGAGTTAAGGACCTTA+AGG + chr3.3:10537307-10537326 MS.gene039692:intron 40.0%
TCAGACAGGATTATTGCATC+CGG - chr3.3:10534836-10534855 None:intergenic 40.0%
TCATCTCCTGTGATTGAAGT+TGG - chr3.3:10535990-10536009 None:intergenic 40.0%
TCCAATTGATGAGGAGTTGA+GGG - chr3.3:10537596-10537615 None:intergenic 40.0%
TCTCAAAACGAAAACGACGT+TGG - chr3.3:10535470-10535489 None:intergenic 40.0%
TGAAGCTATTCGTTCACATG+TGG + chr3.3:10535662-10535681 MS.gene039692:CDS 40.0%
TGATTCCGTCATGAAACCAA+AGG - chr3.3:10533671-10533690 None:intergenic 40.0%
TGATTGAAAGAATGCGCTAC+TGG - chr3.3:10534099-10534118 None:intergenic 40.0%
TGCTATGTTTGCGGAAGATT+GGG + chr3.3:10533889-10533908 MS.gene039692:CDS 40.0%
TGGAAGTTAATGACTCTCTG+AGG + chr3.3:10535017-10535036 MS.gene039692:intron 40.0%
TGGACATTTATCTGCTTGCA+TGG - chr3.3:10536069-10536088 None:intergenic 40.0%
TGGACTCGCTGATATTCATA+TGG + chr3.3:10535251-10535270 MS.gene039692:intron 40.0%
TGGAGATGTTGCACTTAAGT+TGG + chr3.3:10536454-10536473 MS.gene039692:intron 40.0%
TGGAGGTTAACTGGATTCTA+TGG + chr3.3:10535046-10535065 MS.gene039692:intron 40.0%
TGGATGGCTATGATTTCACT+TGG + chr3.3:10535271-10535290 MS.gene039692:intron 40.0%
TTCAAAGGGTGGTCAAGATA+CGG + chr3.3:10534638-10534657 MS.gene039692:CDS 40.0%
TTCTGTTGACCGTATTGGAA+GGG + chr3.3:10534919-10534938 MS.gene039692:intron 40.0%
TTGATTGTCGGTCTGAAGAT+GGG + chr3.3:10535883-10535902 MS.gene039692:CDS 40.0%
TTGCTATGTTTGCGGAAGAT+TGG + chr3.3:10533888-10533907 MS.gene039692:CDS 40.0%
TTGGTTAATGGAGCTTCTGT+GGG + chr3.3:10536602-10536621 MS.gene039692:intron 40.0%
TTTCTGTTGACCGTATTGGA+AGG + chr3.3:10534918-10534937 MS.gene039692:intron 40.0%
TTTGATTGTCGGTCTGAAGA+TGG + chr3.3:10535882-10535901 MS.gene039692:CDS 40.0%
! AAATGGGTTTCTCATCTCGA+TGG + chr3.3:10536534-10536553 MS.gene039692:intron 40.0%
! AACAACGTGCTAAGACCTTT+TGG + chr3.3:10535763-10535782 MS.gene039692:CDS 40.0%
! AAGACCTTTTGGTATCGTGA+TGG + chr3.3:10535774-10535793 MS.gene039692:CDS 40.0%
! AATGGGTTTCTCATCTCGAT+GGG + chr3.3:10536535-10536554 MS.gene039692:intron 40.0%
! CACTTTAGAGGAGTTCAAAC+AGG + chr3.3:10536034-10536053 MS.gene039692:intron 40.0%
! GGTTTCATGACGGAATCAAT+GGG + chr3.3:10533673-10533692 MS.gene039692:CDS 40.0%
! TCTTATTTGGTGGAACTGTC+GGG + chr3.3:10534754-10534773 MS.gene039692:intron 40.0%
! TGGTTTCATGACGGAATCAA+TGG + chr3.3:10533672-10533691 MS.gene039692:CDS 40.0%
! TGTCTAAGATAGATCGACCT+GGG - chr3.3:10536376-10536395 None:intergenic 40.0%
! TTGTCTAAGATAGATCGACC+TGG - chr3.3:10536377-10536396 None:intergenic 40.0%
!! ATAACTTTGGTTCTTGGAGG+AGG + chr3.3:10533746-10533765 MS.gene039692:CDS 40.0%
!! CGGAGAATAACTTTGGTTCT+TGG + chr3.3:10533740-10533759 MS.gene039692:CDS 40.0%
!! CTTTAGAGCTTGTGAAAGTG+AGG + chr3.3:10536814-10536833 MS.gene039692:intron 40.0%
!! GTCTTATTTGGTGGAACTGT+CGG + chr3.3:10534753-10534772 MS.gene039692:intron 40.0%
!!! CGAAGCCTTTTGAGTTGTTT+AGG - chr3.3:10534552-10534571 None:intergenic 40.0%
!!! GGTCACTTTTGCTATGTTTG+CGG + chr3.3:10533880-10533899 MS.gene039692:CDS 40.0%
AAACCTGGGTTAAAGCCATC+GGG - chr3.3:10536095-10536114 None:intergenic 45.0%
AACAATCGTCTGCAAAGAGG+AGG - chr3.3:10536787-10536806 None:intergenic 45.0%
AACGGTTGATTACTCGGTCT+TGG + chr3.3:10536583-10536602 MS.gene039692:intron 45.0%
AATAATGTAAAGGCGGGACC+TGG + chr3.3:10534705-10534724 MS.gene039692:intron 45.0%
AATCAGTCAACTTTCGTCCC+AGG + chr3.3:10536356-10536375 MS.gene039692:intron 45.0%
AATGGCCACTCCAATTGATG+AGG - chr3.3:10537605-10537624 None:intergenic 45.0%
ACAACTCAAAAGGCTTCGCA+TGG + chr3.3:10534554-10534573 MS.gene039692:CDS 45.0%
ACACTTCGTGCTGAGTTCAA+GGG + chr3.3:10533982-10534001 MS.gene039692:CDS 45.0%
ACCCTCAACTCCTCATCAAT+TGG + chr3.3:10537592-10537611 MS.gene039692:intron 45.0%
ACCGTTGAGCAGACTAAAGA+AGG + chr3.3:10534591-10534610 MS.gene039692:CDS 45.0%
ACCTCAGAAGCAGTGGAATA+TGG + chr3.3:10537652-10537671 MS.gene039692:intron 45.0%
AGCAAGTACTAGAAGGAAGC+TGG + chr3.3:10535827-10535846 MS.gene039692:CDS 45.0%
AGCTTGAACCCACATCTCAA+TGG - chr3.3:10533638-10533657 None:intergenic 45.0%
AGGGGAAATTGGAGGTTAAC+TGG + chr3.3:10535037-10535056 MS.gene039692:intron 45.0%
ATCACAATTAGCGGCGTCTT+TGG + chr3.3:10534443-10534462 MS.gene039692:CDS 45.0%
ATGGCTTCCAATTTCTCTGC+TGG + chr3.3:10533301-10533320 MS.gene039692:CDS 45.0%
ATGTGGATGCCTCTAATGTG+AGG + chr3.3:10535679-10535698 MS.gene039692:CDS 45.0%
ATTCTTCTCGGTAGTCAGGT+TGG + chr3.3:10533697-10533716 MS.gene039692:CDS 45.0%
CAACTCCTCATCAATTGGAG+TGG + chr3.3:10537597-10537616 MS.gene039692:intron 45.0%
CAGCATCCAAAACAGCTTGT+CGG - chr3.3:10535233-10535252 None:intergenic 45.0%
CCAAACTGGTATATGTTCGC+CGG - chr3.3:10537537-10537556 None:intergenic 45.0%
CCGGTTTATAAGTTCGGACT+AGG - chr3.3:10534817-10534836 None:intergenic 45.0%
CGGACTGAGCACTTTCAATT+GGG - chr3.3:10534389-10534408 None:intergenic 45.0%
CGGCGAACATATACCAGTTT+GGG + chr3.3:10537535-10537554 MS.gene039692:CDS 45.0%
CGTGCAACATTACTGATCCA+AGG - chr3.3:10537566-10537585 None:intergenic 45.0%
CTCCAATTGATGAGGAGTTG+AGG - chr3.3:10537597-10537616 None:intergenic 45.0%
CTGGTTCCAACTTCAATCAC+AGG + chr3.3:10535981-10536000 MS.gene039692:intron 45.0%
CTGTGATTGAAGTTGGAACC+AGG - chr3.3:10535983-10536002 None:intergenic 45.0%
CTTGGTTAATGGAGCTTCTG+TGG + chr3.3:10536601-10536620 MS.gene039692:intron 45.0%
GAAACCTGGGTTAAAGCCAT+CGG - chr3.3:10536096-10536115 None:intergenic 45.0%
GAAACTTTCTGCAACACCAG+AGG - chr3.3:10533580-10533599 None:intergenic 45.0%
GAAGTAGCAATCTGCAGAAC+TGG - chr3.3:10534279-10534298 None:intergenic 45.0%
GACGCCGCTAATTGTGATAT+TGG - chr3.3:10534441-10534460 None:intergenic 45.0%
GAGTTGTTTAGGTCCTTCAG+AGG - chr3.3:10534541-10534560 None:intergenic 45.0%
GCCGCTAATTGTGATATTGG+AGG - chr3.3:10534438-10534457 None:intergenic 45.0%
GCTATGTTTGCGGAAGATTG+GGG + chr3.3:10533890-10533909 MS.gene039692:CDS 45.0%
GCTCCAAAATAGTCACTTCG+AGG - chr3.3:10537425-10537444 None:intergenic 45.0%
GGATTCTATGGTATGCCAGA+AGG + chr3.3:10535058-10535077 MS.gene039692:intron 45.0%
GGGAAGTTATCAAAGAGCCA+AGG - chr3.3:10533559-10533578 None:intergenic 45.0%
GGTCAAGAAGTTTATCAGGC+AGG + chr3.3:10536140-10536159 MS.gene039692:intron 45.0%
GTCTTTGGCACACATACTGA+AGG + chr3.3:10534458-10534477 MS.gene039692:CDS 45.0%
GTGCTGCGGATCTATCTAAA+TGG + chr3.3:10535583-10535602 MS.gene039692:CDS 45.0%
TACACTTCGTGCTGAGTTCA+AGG + chr3.3:10533981-10534000 MS.gene039692:CDS 45.0%
TACCTGTACCCAACACTTGA+CGG - chr3.3:10536974-10536993 None:intergenic 45.0%
TATTGCAGCGTTCAGCTTCA+TGG - chr3.3:10536718-10536737 None:intergenic 45.0%
TCCATATTCCACTGCTTCTG+AGG - chr3.3:10537656-10537675 None:intergenic 45.0%
TCTATGGTATGCCAGAAGGA+GGG + chr3.3:10535062-10535081 MS.gene039692:intron 45.0%
TCTGTTGACCGTATTGGAAG+GGG + chr3.3:10534920-10534939 MS.gene039692:intron 45.0%
TGAACCGTTTGTGACGAGTT+GGG + chr3.3:10533801-10533820 MS.gene039692:CDS 45.0%
TGAACTCAGCACGAAGTGTA+GGG - chr3.3:10533981-10534000 None:intergenic 45.0%
TGAGCACTTTCAATTGGGAG+AGG - chr3.3:10534384-10534403 None:intergenic 45.0%
TGATTACACCTCAGAAGCAG+TGG + chr3.3:10537645-10537664 MS.gene039692:intron 45.0%
TGATTAGTGATCCCGGAAGA+AGG - chr3.3:10537175-10537194 None:intergenic 45.0%
TGGTCAAGATACGGCTAGTA+AGG + chr3.3:10534647-10534666 MS.gene039692:intron 45.0%
TGGTCGAGTGAAGATTGGTA+GGG + chr3.3:10534128-10534147 MS.gene039692:CDS 45.0%
TGTCCAGCGGAGTAGTTATT+GGG - chr3.3:10533615-10533634 None:intergenic 45.0%
TGTCCTGATCTTTATGCGGA+TGG + chr3.3:10533928-10533947 MS.gene039692:CDS 45.0%
TGTTTCGTTTCGTGATCGCA+TGG + chr3.3:10533423-10533442 MS.gene039692:CDS 45.0%
TTCTATGGTATGCCAGAAGG+AGG + chr3.3:10535061-10535080 MS.gene039692:intron 45.0%
TTGAACTCAGCACGAAGTGT+AGG - chr3.3:10533982-10534001 None:intergenic 45.0%
TTGCTGCGACCAATCATTGA+TGG - chr3.3:10537011-10537030 None:intergenic 45.0%
TTGGCACACATACTGAAGGT+TGG + chr3.3:10534462-10534481 MS.gene039692:CDS 45.0%
TTGGTCGAGTGAAGATTGGT+AGG + chr3.3:10534127-10534146 MS.gene039692:CDS 45.0%
TTTCAGTGGAGTATAGGCAC+CGG + chr3.3:10537515-10537534 MS.gene039692:intron 45.0%
! AGTGACCGAGCTTTTCATAG+TGG - chr3.3:10533867-10533886 None:intergenic 45.0%
! ATACTGAAGGTTGGTCGAAG+TGG + chr3.3:10534471-10534490 MS.gene039692:CDS 45.0%
! ATGACTCTCTGAGGGGAAAT+TGG + chr3.3:10535026-10535045 MS.gene039692:intron 45.0%
! ATGTTGATGAAGGCAAGCGT+TGG + chr3.3:10533953-10533972 MS.gene039692:CDS 45.0%
! CTTATTTGGTGGAACTGTCG+GGG + chr3.3:10534755-10534774 MS.gene039692:intron 45.0%
! GCGGATGGTTATGTTGATGA+AGG + chr3.3:10533943-10533962 MS.gene039692:CDS 45.0%
! GCTCTTTGATAACTTCCCTC+TGG + chr3.3:10533561-10533580 MS.gene039692:CDS 45.0%
! GCTTGCTAATAGGCTCAAAC+AGG + chr3.3:10536310-10536329 MS.gene039692:intron 45.0%
! GGAGCGCTAAAGATGTGATT+CGG + chr3.3:10537486-10537505 MS.gene039692:intron 45.0%
! GGCTCTAATGTTTCAAAGGG+TGG + chr3.3:10534627-10534646 MS.gene039692:CDS 45.0%
! TACTGAAGGTTGGTCGAAGT+GGG + chr3.3:10534472-10534491 MS.gene039692:CDS 45.0%
! TAGCCAAGGTGCTTGCTAAT+AGG + chr3.3:10536300-10536319 MS.gene039692:intron 45.0%
! TGTTGATGAAGGCAAGCGTT+GGG + chr3.3:10533954-10533973 MS.gene039692:CDS 45.0%
! TTTATCAGGCAGGGTGTCAT+TGG + chr3.3:10536150-10536169 MS.gene039692:intron 45.0%
!! CACCAACCTTTAGAGCAACA+CGG - chr3.3:10533783-10533802 None:intergenic 45.0%
!! CCAATTGAAAGTGCTCAGTC+CGG + chr3.3:10534387-10534406 MS.gene039692:CDS 45.0%
!! GGGTGTCATTGGTTAGAAAG+TGG + chr3.3:10536161-10536180 MS.gene039692:intron 45.0%
!! TGGAACCAGGTTGATGACAT+TGG - chr3.3:10535970-10535989 None:intergenic 45.0%
!!! CAACACTTTTGGGACACTTG+TGG + chr3.3:10536119-10536138 MS.gene039692:intron 45.0%
ACGTGCCAATGTCATCAACC+TGG + chr3.3:10535962-10535981 MS.gene039692:CDS 50.0%
ACTGGAGCAATGTCACGCAT+TGG - chr3.3:10534261-10534280 None:intergenic 50.0%
AGCGGTACCAGCAGAGAAAT+TGG - chr3.3:10533311-10533330 None:intergenic 50.0%
AGGGTAATGATCAGAGGACG+TGG - chr3.3:10535406-10535425 None:intergenic 50.0%
AGTTATTGGGTCATCGCCGA+AGG - chr3.3:10533602-10533621 None:intergenic 50.0%
ATCCAAGGGTGATCCCAAAC+TGG - chr3.3:10537551-10537570 None:intergenic 50.0%
ATGACATTGGCACGTGAGCT+TGG - chr3.3:10535957-10535976 None:intergenic 50.0%
ATGCGGCAGCAAGTACTAGA+AGG + chr3.3:10535820-10535839 MS.gene039692:CDS 50.0%
ATGGAGCGTGTGATTCGTAC+TGG + chr3.3:10533532-10533551 MS.gene039692:CDS 50.0%
ATTTGCATGGGCAGACCGAT+TGG - chr3.3:10533338-10533357 None:intergenic 50.0%
CAAATTCTCGAGGACTGCAC+TGG + chr3.3:10537243-10537262 MS.gene039692:intron 50.0%
CAAGCTCATAACCTCCCCTT+TGG + chr3.3:10533652-10533671 MS.gene039692:CDS 50.0%
CACATCTCAATGGTGTCCAG+CGG - chr3.3:10533628-10533647 None:intergenic 50.0%
CCGGACTGAGCACTTTCAAT+TGG - chr3.3:10534390-10534409 None:intergenic 50.0%
CCGGCGAACATATACCAGTT+TGG + chr3.3:10537534-10537553 MS.gene039692:CDS 50.0%
CGGAAGCCTTGAATAAGCCA+CGG - chr3.3:10535213-10535232 None:intergenic 50.0%
CGTCAACCGTGGCTTATTCA+AGG + chr3.3:10535204-10535223 MS.gene039692:intron 50.0%
GAGCCTATTAGCAAGCACCT+TGG - chr3.3:10536306-10536325 None:intergenic 50.0%
GATAAATGTCCAGGACCCGA+TGG + chr3.3:10536077-10536096 MS.gene039692:intron 50.0%
GCAGTCCAGCAAATCAGAGT+TGG - chr3.3:10533362-10533381 None:intergenic 50.0%
GCGAAGACAAAAGGGAAGAG+TGG + chr3.3:10536434-10536453 MS.gene039692:intron 50.0%
GCTGGACACCATTGAGATGT+GGG + chr3.3:10533627-10533646 MS.gene039692:CDS 50.0%
GGGTATTCTTCTCGGTAGTC+AGG + chr3.3:10533693-10533712 MS.gene039692:CDS 50.0%
GGTTTCTCATCTCGATGGGT+TGG + chr3.3:10536539-10536558 MS.gene039692:intron 50.0%
GTGAACCGTTTGTGACGAGT+TGG + chr3.3:10533800-10533819 MS.gene039692:CDS 50.0%
GTGATCGCATGGCTCAAGTT+TGG + chr3.3:10533434-10533453 MS.gene039692:CDS 50.0%
GTGTCCAGCGGAGTAGTTAT+TGG - chr3.3:10533616-10533635 None:intergenic 50.0%
GTTATGAGGGATAGGGGACT+AGG + chr3.3:10534675-10534694 MS.gene039692:intron 50.0%
TATGGCTATGGTTGGCAAGC+AGG + chr3.3:10537337-10537356 MS.gene039692:intron 50.0%
TCCACAACCTGTGCCTAGTT+CGG + chr3.3:10535443-10535462 MS.gene039692:CDS 50.0%
TGACCCAATAACTACTCCGC+TGG + chr3.3:10533609-10533628 MS.gene039692:CDS 50.0%
! ACTCTCTGAGGGGAAATTGG+AGG + chr3.3:10535029-10535048 MS.gene039692:intron 50.0%
! AGGCTTCCGACAAGCTGTTT+TGG + chr3.3:10535224-10535243 MS.gene039692:intron 50.0%
! CCATTGATTGTCAACCCCTC+CGG - chr3.3:10534016-10534035 None:intergenic 50.0%
! CCTCCCCTTTGGTTTCATGA+CGG + chr3.3:10533663-10533682 MS.gene039692:CDS 50.0%
! CGCTAAAGATGTGATTCGGC+GGG + chr3.3:10537490-10537509 MS.gene039692:intron 50.0%
! CGGGGTTTTCAGTGGAGTAT+AGG + chr3.3:10537509-10537528 MS.gene039692:intron 50.0%
! GAAGTCTGAGAGTCGCCTTT+TGG - chr3.3:10536230-10536249 None:intergenic 50.0%
! GAGGTGGCTTGGCATGTTTA+TGG + chr3.3:10534942-10534961 MS.gene039692:intron 50.0%
! GCGCTAAAGATGTGATTCGG+CGG + chr3.3:10537489-10537508 MS.gene039692:intron 50.0%
! GCTAAAGATGTGATTCGGCG+GGG + chr3.3:10537491-10537510 MS.gene039692:intron 50.0%
! GGGTACCTTTTGATCCAGCA+AGG + chr3.3:10534199-10534218 MS.gene039692:CDS 50.0%
! GTGTGATTCGTACTGGTCCT+TGG + chr3.3:10533539-10533558 MS.gene039692:CDS 50.0%
! GTTGATGAAGGCAAGCGTTG+GGG + chr3.3:10533955-10533974 MS.gene039692:CDS 50.0%
! TACCAGTTTGGGATCACCCT+TGG + chr3.3:10537546-10537565 MS.gene039692:CDS 50.0%
! TTCTAGTACTTGCTGCCGCA+TGG - chr3.3:10535821-10535840 None:intergenic 50.0%
!! AGGACTGCACTGGCTTTCTT+GGG + chr3.3:10537253-10537272 MS.gene039692:intron 50.0%
!! CGACAAGCTGTTTTGGATGC+TGG + chr3.3:10535231-10535250 MS.gene039692:intron 50.0%
!! CTCCGTGTTGCTCTAAAGGT+TGG + chr3.3:10533778-10533797 MS.gene039692:CDS 50.0%
!! GGCTTGTTGAACCCGAGTTT+AGG + chr3.3:10535496-10535515 MS.gene039692:CDS 50.0%
!! TCTCATCTCGATGGGTTGGT+TGG + chr3.3:10536543-10536562 MS.gene039692:intron 50.0%
!! TGATTTGCTGGACTGCTGCT+TGG + chr3.3:10533366-10533385 MS.gene039692:CDS 50.0%
AAACGACGTTGGCCCGAACT+AGG - chr3.3:10535459-10535478 None:intergenic 55.0%
AGCCACCTCCCCTTCCAATA+CGG - chr3.3:10534931-10534950 None:intergenic 55.0%
AGTGACGGTGTGGTGCATGA+TGG + chr3.3:10534066-10534085 MS.gene039692:CDS 55.0%
ATGAGGGATAGGGGACTAGG+TGG + chr3.3:10534678-10534697 MS.gene039692:intron 55.0%
ATGGTATGCCAGAAGGAGGG+AGG + chr3.3:10535065-10535084 MS.gene039692:intron 55.0%
ATGTCTCTCGCAGGCTGGTA+GGG + chr3.3:10537094-10537113 MS.gene039692:intron 55.0%
CCACAACCTGTGCCTAGTTC+GGG + chr3.3:10535444-10535463 MS.gene039692:CDS 55.0%
CCGGAGGGGTTGACAATCAA+TGG + chr3.3:10534013-10534032 MS.gene039692:CDS 55.0%
CCGTCATGAAACCAAAGGGG+AGG - chr3.3:10533666-10533685 None:intergenic 55.0%
CGCATTGGAGGAGTCTCTTG+AGG - chr3.3:10534246-10534265 None:intergenic 55.0%
CGCTGGACACCATTGAGATG+TGG + chr3.3:10533626-10533645 MS.gene039692:CDS 55.0%
CTATGGTTGGCAAGCAGGCT+TGG + chr3.3:10537342-10537361 MS.gene039692:intron 55.0%
GAAGGTCTAAGCGTCAACCG+TGG + chr3.3:10535193-10535212 MS.gene039692:intron 55.0%
GAGGGAGGAGAAGAGAGTCT+TGG + chr3.3:10535080-10535099 MS.gene039692:intron 55.0%
GAGTAGCAGATGTCTCTCGC+AGG + chr3.3:10537085-10537104 MS.gene039692:intron 55.0%
GAGTTCAAGGGCAGCAGTAC+CGG + chr3.3:10533994-10534013 MS.gene039692:CDS 55.0%
GGAGCAATGTCACGCATTGG+AGG - chr3.3:10534258-10534277 None:intergenic 55.0%
GGTGTGGTGCATGATGGCAT+GGG + chr3.3:10534072-10534091 MS.gene039692:CDS 55.0%
GTTGACCGTATTGGAAGGGG+AGG + chr3.3:10534923-10534942 MS.gene039692:intron 55.0%
TATTGGAAGGGGAGGTGGCT+TGG + chr3.3:10534931-10534950 MS.gene039692:intron 55.0%
TCGCGCTGTGGAGGAGAAAT+TGG + chr3.3:10535314-10535333 MS.gene039692:intron 55.0%
TCTCTTCTCCTCCCTCCTTC+TGG - chr3.3:10535076-10535095 None:intergenic 55.0%
TCTGTGGGTCCTATTGTGCC+AGG + chr3.3:10536617-10536636 MS.gene039692:intron 55.0%
TGAGGGATAGGGGACTAGGT+GGG + chr3.3:10534679-10534698 MS.gene039692:intron 55.0%
TGGCAAGCAGGCTTGGAAGT+TGG + chr3.3:10537349-10537368 MS.gene039692:intron 55.0%
TGGTGGAACTGTCGGGGTTT+AGG + chr3.3:10534761-10534780 MS.gene039692:intron 55.0%
TGGTGGTATGAGTGACGGTG+TGG + chr3.3:10534056-10534075 MS.gene039692:CDS 55.0%
! GCGTCTCCGTGTTGCTCTAA+AGG + chr3.3:10533774-10533793 MS.gene039692:CDS 55.0%
! TTGCTGGACTGCTGCTTGGT+GGG + chr3.3:10533370-10533389 MS.gene039692:CDS 55.0%
! TTTGCTGGACTGCTGCTTGG+TGG + chr3.3:10533369-10533388 MS.gene039692:CDS 55.0%
!! CTCGGTGTCCGTCAAGTGTT+GGG + chr3.3:10536963-10536982 MS.gene039692:intron 55.0%
!! CTTCTCGGTAGTCAGGTTGG+TGG + chr3.3:10533700-10533719 MS.gene039692:CDS 55.0%
!! GAGGACTGCACTGGCTTTCT+TGG + chr3.3:10537252-10537271 MS.gene039692:intron 55.0%
!! GTCCGTCAAGTGTTGGGTAC+AGG + chr3.3:10536969-10536988 MS.gene039692:intron 55.0%
!! TCTCGGTGTCCGTCAAGTGT+TGG + chr3.3:10536962-10536981 MS.gene039692:intron 55.0%
!! TGATTCGGCGGGGTTTTCAG+TGG + chr3.3:10537501-10537520 MS.gene039692:intron 55.0%
AGACCGCGTCCTGGCACAAT+AGG - chr3.3:10536629-10536648 None:intergenic 60.0%
AGCAGATGTCTCTCGCAGGC+TGG + chr3.3:10537089-10537108 MS.gene039692:intron 60.0%
CCCGAACTAGGCACAGGTTG+TGG - chr3.3:10535447-10535466 None:intergenic 60.0%
CGGTGTGGTGCATGATGGCA+TGG + chr3.3:10534071-10534090 MS.gene039692:CDS 60.0%
CTCATTTACCTAGGCGGGCC+TGG - chr3.3:10534734-10534753 None:intergenic 60.0%
CTGGTACCGCTGCTGCCAAT+CGG + chr3.3:10533320-10533339 MS.gene039692:CDS 60.0%
GACCGTATTGGAAGGGGAGG+TGG + chr3.3:10534926-10534945 MS.gene039692:intron 60.0%
GATGTCTCTCGCAGGCTGGT+AGG + chr3.3:10537093-10537112 MS.gene039692:intron 60.0%
GGGTTAAAGCCATCGGGTCC+TGG - chr3.3:10536089-10536108 None:intergenic 60.0%
GGTCCTATTGTGCCAGGACG+CGG + chr3.3:10536623-10536642 MS.gene039692:intron 60.0%
TCTTGGAACTGCTCGCGCTG+TGG + chr3.3:10535302-10535321 MS.gene039692:intron 60.0%
! TCAAGGGCAGCAGTACCGGA+GGG + chr3.3:10533998-10534017 MS.gene039692:CDS 60.0%
! TGGACTGCTGCTTGGTGGGT+AGG + chr3.3:10533374-10533393 MS.gene039692:CDS 60.0%
! TTCAAGGGCAGCAGTACCGG+AGG + chr3.3:10533997-10534016 MS.gene039692:CDS 60.0%
!! GGACCCGATGGCTTTAACCC+AGG + chr3.3:10536089-10536108 MS.gene039692:intron 60.0%
AAAGGCGGGACCTGGACACC+AGG + chr3.3:10534713-10534732 MS.gene039692:intron 65.0%
CGTTGGCCCGAACTAGGCAC+AGG - chr3.3:10535453-10535472 None:intergenic 65.0%
GGCAGACCGATTGGCAGCAG+CGG - chr3.3:10533329-10533348 None:intergenic 65.0%
TCTCTCGCAGGCTGGTAGGG+AGG + chr3.3:10537097-10537116 MS.gene039692:intron 65.0%
TGGAACTGCTCGCGCTGTGG+AGG + chr3.3:10535305-10535324 MS.gene039692:intron 65.0%
! CAAGGGCAGCAGTACCGGAG+GGG + chr3.3:10533999-10534018 MS.gene039692:CDS 65.0%
AGGACGCGGTCTCCGTCAGG+GGG + chr3.3:10536637-10536656 MS.gene039692:intron 70.0%
CAGGACGCGGTCTCCGTCAG+GGG + chr3.3:10536636-10536655 MS.gene039692:intron 70.0%
CCAGGACGCGGTCTCCGTCA+GGG + chr3.3:10536635-10536654 MS.gene039692:intron 70.0%
GTGAGAGGGGGTCCCCCTGA+CGG - chr3.3:10536652-10536671 None:intergenic 70.0%
CCCTGACGGAGACCGCGTCC+TGG - chr3.3:10536638-10536657 None:intergenic 75.0%
CCTAGGCGGGCCTGGTGTCC+AGG - chr3.3:10534726-10534745 None:intergenic 75.0%
CCTGGACACCAGGCCCGCCT+AGG + chr3.3:10534723-10534742 MS.gene039692:intron 75.0%
GCCAGGACGCGGTCTCCGTC+AGG + chr3.3:10536634-10536653 MS.gene039692:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 10533301 10537684 10533301 ID=MS.gene039692
chr3.3 mRNA 10533301 10537684 10533301 ID=MS.gene039692.t1;Parent=MS.gene039692
chr3.3 exon 10533301 10534663 10533301 ID=MS.gene039692.t1.exon1;Parent=MS.gene039692.t1
chr3.3 CDS 10533301 10534663 10533301 ID=cds.MS.gene039692.t1;Parent=MS.gene039692.t1
chr3.3 exon 10535436 10535983 10535436 ID=MS.gene039692.t1.exon2;Parent=MS.gene039692.t1
chr3.3 CDS 10535436 10535983 10535436 ID=cds.MS.gene039692.t1;Parent=MS.gene039692.t1
chr3.3 exon 10537521 10537572 10537521 ID=MS.gene039692.t1.exon3;Parent=MS.gene039692.t1
chr3.3 CDS 10537521 10537572 10537521 ID=cds.MS.gene039692.t1;Parent=MS.gene039692.t1
chr3.3 exon 10537659 10537684 10537659 ID=MS.gene039692.t1.exon4;Parent=MS.gene039692.t1
chr3.3 CDS 10537659 10537684 10537659 ID=cds.MS.gene039692.t1;Parent=MS.gene039692.t1
Gene Sequence

>MS.gene039692

ATGGCTTCCAATTTCTCTGCTGGTACCGCTGCTGCCAATCGGTCTGCCCATGCAAATTCCAACTCTGATTTGCTGGACTGCTGCTTGGTGGGTAGGCTGTTGATTTCCAAACCAGTTCACTTTGTTTCGTTTCGTGATCGCATGGCTCAAGTTTGGAAACCTGAACGTAAGGTTGAAATCTCAAGAATTGACAACAATCGCTTCATGTTTCAGTTCTTTCATCATAAGGACATGGAGCGTGTGATTCGTACTGGTCCTTGGCTCTTTGATAACTTCCCTCTGGTGTTGCAGAAAGTTTCCTTCGGCGATGACCCAATAACTACTCCGCTGGACACCATTGAGATGTGGGTTCAAGCTCATAACCTCCCCTTTGGTTTCATGACGGAATCAATGGGTATTCTTCTCGGTAGTCAGGTTGGTGGTTTTGTCAAGTATGATGCGGAGAATAACTTTGGTTCTTGGAGGAGGTTCATGCGTCTCCGTGTTGCTCTAAAGGTTGGTGAACCGTTTGTGACGAGTTGGGAATTCGAAAGAGAAGGTGCTGATGCTGTTATCGTGTTGTTCCACTATGAAAAGCTCGGTCACTTTTGCTATGTTTGCGGAAGATTGGGGCATAATGATAGCTACTGTCCTGATCTTTATGCGGATGGTTATGTTGATGAAGGCAAGCGTTGGGGCCCTACACTTCGTGCTGAGTTCAAGGGCAGCAGTACCGGAGGGGTTGACAATCAATGGCTTCATGATAGTAGGAAGAATGGTGGTATGAGTGACGGTGTGGTGCATGATGGCATGGGTCCAGTAGCGCATTCTTTCAATCATGCTAAGTTTGGTCGAGTGAAGATTGGTAGGGATTTGGTTAAGAAAGTGTTGTTGTTCTTTAAGCTTGTGAATGGTACTTGGGTACCTTTTGATCCAGCAAGGTGTTTATTTGAAGAAAGTGTGCCTCAAGAGACTCCTCCAATGCGTGACATTGCTCCAGTTCTGCAGATTGCTACTTCCTATGAACCGCAAAGCATTTGTATAGCTGAAAGTGATGAGGAACGCATTGCTCGTTTGATTCAAGAAGCTAGGCTCAAGAATCCTCTCCCAATTGAAAGTGCTCAGTCCGGTTTTGTCTCTAATGTCGCTGCCCAGCCTCCAATATCACAATTAGCGGCGTCTTTGGCACACATACTGAAGGTTGGTCGAAGTGGGATGCCTAATCCGAAAGTTAGTACTGATGGTACAGTTAAGATTGCCTCTGAAGGACCTAAACAACTCAAAAGGCTTCGCATGGAAGAACTCGAGAACACCGTTGAGCAGACTAAAGAAGGTGTTGAGATGAATGGCTCTAATGTTTCAAAGGGTGGTCAAGATACGGCTAGTAAGGATGTTGTTATGAGGGATAGGGGACTAGGTGGGATTAATAATGTAAAGGCGGGACCTGGACACCAGGCCCGCCTAGGTAAATGAGTCTTATTTGGTGGAACTGTCGGGGTTTAGGTAGCCCGAGCACAGTTCCTAATTTAAAGTACCTAGTCCGAACTTATAAACCGGATGCAATAATCCTGTCTGAAACAATGACAACGTCTAATAAAATTGAAGAATTGAAATATGTGCTGGCTTTTGATTACTGTTTTTCTGTTGACCGTATTGGAAGGGGAGGTGGCTTGGCATGTTTATGGAATAAGAACTTTAACTGTACTATCACAAATTTCTCCCAAAATCATATTGATATGGAAGTTAATGACTCTCTGAGGGGAAATTGGAGGTTAACTGGATTCTATGGTATGCCAGAAGGAGGGAGGAGAAGAGAGTCTTGGAATTTACTTCGACAATTATCCAATCTTTCTCAACTTCCTTGGTGTATTATTGGTGACTTAGTGATATTCTATCAGCTGATGAAAAGAAAGGAAGGTCTAAGCGTCAACCGTGGCTTATTCAAGGCTTCCGACAAGCTGTTTTGGATGCTGGACTCGCTGATATTCATATGGATGGCTATGATTTCACTTGGTTTAAAAGTCTTGGAACTGCTCGCGCTGTGGAGGAGAAATTGGATAGAGCTATGGCTAATGATAGTTGGTTTGATAATTTTCCTAATGCAAAGCTTGAGTGTCTTACTACCACGTCCTCTGATCATTACCCTCTTTTATTAGATTGTGCTCCACAACCTGTGCCTAGTTCGGGCCAACGTCGTTTTCGTTTTGAGAATGCTTGGCTTGTTGAACCCGAGTTTAGGTCTTTTGTTTCTCAAAGATGGCAAGATTATGGTGATCGTCCTTTTATGAATAAACTCAATCACTGTGCTGCGGATCTATCTAAATGGAGTATGAATACTAACCAAAACATCAGACAAGAGATTCGCAAAAATCAACGCAAGCTTGAAGCTATTCGTTCACATGTGGATGCCTCTAATGTGAGGTATTTCAATATGCTTAGACAGAGGTTGGACAAACTGTTGATTAAAGATGATTTGTTTTGGAAACAACGTGCTAAGACCTTTTGGTATCGTGATGGTGATCTTAATACGAAGTTTTTCCATGCGGCAGCAAGTACTAGAAGGAAGCTGGATAGAATTGAACATCTTGAAGATGAGCATGGTTTTGATTGTCGGTCTGAAGATGGGCTAAAGCATATTGCCCGTGATTATTTCATGAATCTTTTTCAAAAATCACCAAGCTCACGTGCCAATGTCATCAACCTGGTTCCAACTTCAATCACAGGAGATGATAATGATTTGTTAACTGCGAACTTCACTTTAGAGGAGTTCAAACAGGCAGCTTTCTCCATGCAAGCAGATAAATGTCCAGGACCCGATGGCTTTAACCCAGGTTTCTATCAACACTTTTGGGACACTTGTGGTCAAGAAGTTTATCAGGCAGGGTGTCATTGGTTAGAAAGTGGCGCTTTCCCACCTCATGTCAATTCTACTAATATTACTCTCATTCCAAAAGGCGACTCTCAGACTTCAATGAAGTATTGGCGGCCTATTGCTCTCTGTAATGTTGTGTATAAAATAGTAGCCAAGGTGCTTGCTAATAGGCTCAAACAGGTGCTAGATAAGTGTATCTCTATAAATCAGTCAACTTTCGTCCCAGGTCGATCTATCTTAGACAATGCAATGGTGGCTATTGAAATTGTTCACTACATGAAGGCGAAGACAAAAGGGAAGAGTGGAGATGTTGCACTTAAGTTGGACATTAGTAAATCATATGATAGATTAGATTGGGATTACCTACGAGAGATTATGATTCAAATGGGTTTCTCATCTCGATGGGTTGGTTGGATTATGCTTTGTGTTGAAACGGTTGATTACTCGGTCTTGGTTAATGGAGCTTCTGTGGGTCCTATTGTGCCAGGACGCGGTCTCCGTCAGGGGGACCCCCTCTCACCTTATTTATTCATCATTTGTGCTGAAGGACTCTCTTCTCTTATCCATGAAGCTGAACGCTGCAATAACATTAGAGGTACTTCGATATGCAGAAATGCACCAATTATTTCTCACCTCCTCTTTGCAGACGATTGTTTTCTTTTCTTTAGAGCTTGTGAAAGTGAGGCTGTTTGTATGAAATATTTTGACTACTTATGAAGAAGCTTCGGGGCAAGCCATTAATTTACAGAAGTCAGAATTATTTTGCAGTCGTAATACTCTAGATGATTTAAAGAATCTCATTGCTACTACTCTCGGTGTCCGTCAAGTGTTGGGTACAGGTAAATATCTTGGATTACCATCAATGATTGGTCGCAGCAAACATGCAACCTCTAAATTTATTAAGGATCGTATCTGGAACAAAATAAATTCTTGGAGTAGCAGATGTCTCTCGCAGGCTGGTAGGGAGGTTCTTATTAAGTTTGTCTTGCAATCTATTCCTTCCTATGTGATGAGTATTTTCCTTCTTCCGGGATCACTAATCAATGAGATAGAAAAAATGTTAAATTCTTTCTGGTGGGGACACAATTCAGCAAATTCTCGAGGACTGCACTGGCTTTCTTGGGAACGTCTTTCAGTTCCAAAGATGTTTGGAGGTATGGGAGTTAAGGACCTTAAGGCATTTAATATGGCTATGGTTGGCAAGCAGGCTTGGAAGTTGGTTTCATCTCCAGATTCTCTGATCACTCGTTTACTCAAAGCTAAATATTTTCCTCGAAGTGACTATTTTGGAGCTAGTTTAGGCCATAATCCTAGTTTTGTTTGGCGTAGTATTTGGAGCGCTAAAGATGTGATTCGGCGGGGTTTTCAGTGGAGTATAGGCACCGGCGAACATATACCAGTTTGGGATCACCCTTGGATCAGTAATGTTGCACGAGTATTACCCTCAACTCCTCATCAATTGGAGTGGCCATTTATCACTGTTTCTGATTTTCTGATTACACCTCAGAAGCAGTGGAATATGGAGCTCATTAA
Protein sequence

>MS.gene039692.t1

MASNFSAGTAAANRSAHANSNSDLLDCCLVGRLLISKPVHFVSFRDRMAQVWKPERKVEISRIDNNRFMFQFFHHKDMERVIRTGPWLFDNFPLVLQKVSFGDDPITTPLDTIEMWVQAHNLPFGFMTESMGILLGSQVGGFVKYDAENNFGSWRRFMRLRVALKVGEPFVTSWEFEREGADAVIVLFHYEKLGHFCYVCGRLGHNDSYCPDLYADGYVDEGKRWGPTLRAEFKGSSTGGVDNQWLHDSRKNGGMSDGVVHDGMGPVAHSFNHAKFGRVKIGRDLVKKVLLFFKLVNGTWVPFDPARCLFEESVPQETPPMRDIAPVLQIATSYEPQSICIAESDEERIARLIQEARLKNPLPIESAQSGFVSNVAAQPPISQLAASLAHILKVGRSGMPNPKVSTDGTVKIASEGPKQLKRLRMEELENTVEQTKEGVEMNGSNVSKGGQDTANCAPQPVPSSGQRRFRFENAWLVEPEFRSFVSQRWQDYGDRPFMNKLNHCAADLSKWSMNTNQNIRQEIRKNQRKLEAIRSHVDASNVRYFNMLRQRLDKLLIKDDLFWKQRAKTFWYRDGDLNTKFFHAAASTRRKLDRIEHLEDEHGFDCRSEDGLKHIARDYFMNLFQKSPSSRANVINLWSIGTGEHIPVWDHPWIKAVEYGAH