AlfalfaGEDB | MS.gene98467

M. sativa cultivar XinJiangDaYe / MS.gene98467

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98467.t1	AES70414.1	51.8	226	54	3	1	171	55	280	2.10E-45	192.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98467.t1	G7J017	51.8	226	54	3	1	171	55	280	1.5e-45	192.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene98467	MS.gene039692	PPI
MS.gene98467	MS.gene027169	PPI
MS.gene98467	MS.gene55682	PPI
MS.gene98467	MS.gene002590	PPI
MS.gene42903	MS.gene98467	PPI
MS.gene81712	MS.gene98467	PPI
MS.gene026680	MS.gene98467	PPI
MS.gene021555	MS.gene98467	PPI
MS.gene98467	MS.gene055560	PPI
MS.gene048747	MS.gene98467	PPI
MS.gene98467	MS.gene024297	PPI
MS.gene98467	MS.gene059269	PPI
MS.gene98467	MS.gene057934	PPI
MS.gene22200	MS.gene98467	PPI
MS.gene98467	MS.gene37537	PPI
MS.gene98467	MS.gene024841	PPI
MS.gene98467	MS.gene069786	PPI
MS.gene98467	MS.gene42010	PPI
MS.gene98467	MS.gene025158	PPI
MS.gene98467	MS.gene40828	PPI
MS.gene94654	MS.gene98467	PPI
MS.gene98467	MS.gene51799	PPI
MS.gene031967	MS.gene98467	PPI
MS.gene02896	MS.gene98467	PPI
MS.gene063214	MS.gene98467	PPI
MS.gene83772	MS.gene98467	PPI
MS.gene32415	MS.gene98467	PPI
MS.gene035626	MS.gene98467	PPI
MS.gene98467	MS.gene40469	PPI
MS.gene63762	MS.gene98467	PPI
MS.gene98467	MS.gene043140	PPI
MS.gene65623	MS.gene98467	PPI
MS.gene71675	MS.gene98467	PPI
MS.gene30208	MS.gene98467	PPI
MS.gene98467	MS.gene03149	PPI
MS.gene69495	MS.gene98467	PPI
MS.gene98467	MS.gene29321	PPI
MS.gene032311	MS.gene98467	PPI
MS.gene030090	MS.gene98467	PPI
MS.gene96174	MS.gene98467	PPI
MS.gene98467	MS.gene037049	PPI
MS.gene018196	MS.gene98467	PPI
MS.gene86849	MS.gene98467	PPI
MS.gene98467	MS.gene24278	PPI
MS.gene57019	MS.gene98467	PPI
MS.gene98467	MS.gene34618	PPI
MS.gene98467	MS.gene59460	PPI
MS.gene98467	MS.gene060773	PPI
MS.gene98467	MS.gene66650	PPI
MS.gene03936	MS.gene98467	PPI
MS.gene021968	MS.gene98467	PPI
MS.gene98467	MS.gene08713	PPI
MS.gene98467	MS.gene038394	PPI
MS.gene60059	MS.gene98467	PPI
MS.gene98467	MS.gene24070	PPI
MS.gene43393	MS.gene98467	PPI
MS.gene98467	MS.gene73261	PPI
MS.gene34197	MS.gene98467	PPI
MS.gene98467	MS.gene85538	PPI
MS.gene008275	MS.gene98467	PPI
MS.gene98467	MS.gene26844	PPI
MS.gene98467	MS.gene64178	PPI
MS.gene98467	MS.gene055546	PPI
MS.gene038757	MS.gene98467	PPI
MS.gene98467	MS.gene074257	PPI
MS.gene005120	MS.gene98467	PPI
MS.gene98467	MS.gene073573	PPI
MS.gene98467	MS.gene44144	PPI
MS.gene048072	MS.gene98467	PPI
MS.gene98467	MS.gene060718	PPI
MS.gene05436	MS.gene98467	PPI
MS.gene059736	MS.gene98467	PPI
MS.gene70932	MS.gene98467	PPI
MS.gene98467	MS.gene068629	PPI
MS.gene047954	MS.gene98467	PPI
MS.gene35175	MS.gene98467	PPI
MS.gene98467	MS.gene004417	PPI
MS.gene98467	MS.gene009781	PPI
MS.gene98467	MS.gene019177	PPI
MS.gene021965	MS.gene98467	PPI
MS.gene055683	MS.gene98467	PPI
MS.gene042614	MS.gene98467	PPI
MS.gene41643	MS.gene98467	PPI
MS.gene26844	MS.gene98467	PPI
MS.gene98467	MS.gene21066	PPI
MS.gene98467	MS.gene009213	PPI
MS.gene021647	MS.gene98467	PPI
MS.gene98467	MS.gene98127	PPI
MS.gene66651	MS.gene98467	PPI
MS.gene96109	MS.gene98467	PPI
MS.gene98467	MS.gene003264	PPI
MS.gene98467	MS.gene054652	PPI
MS.gene35202	MS.gene98467	PPI
MS.gene051449	MS.gene98467	PPI
MS.gene009121	MS.gene98467	PPI
MS.gene98467	MS.gene27329	PPI
MS.gene98467	MS.gene41393	PPI
MS.gene51804	MS.gene98467	PPI
MS.gene36069	MS.gene98467	PPI
MS.gene98467	MS.gene89815	PPI
MS.gene98467	MS.gene016632	PPI
MS.gene30136	MS.gene98467	PPI
MS.gene98467	MS.gene018474	PPI
MS.gene98467	MS.gene048088	PPI
MS.gene98467	MS.gene86868	PPI
MS.gene61452	MS.gene98467	PPI
MS.gene98467	MS.gene058889	PPI
MS.gene008927	MS.gene98467	PPI
MS.gene016102	MS.gene98467	PPI
MS.gene46941	MS.gene98467	PPI
MS.gene045614	MS.gene98467	PPI
MS.gene96541	MS.gene98467	PPI
MS.gene98467	MS.gene96163	PPI
MS.gene000634	MS.gene98467	PPI
MS.gene46948	MS.gene98467	PPI
MS.gene025873	MS.gene98467	PPI
MS.gene012019	MS.gene98467	PPI
MS.gene013676	MS.gene98467	PPI
MS.gene98467	MS.gene34463	PPI
MS.gene05358	MS.gene98467	PPI
MS.gene95561	MS.gene98467	PPI
MS.gene074257	MS.gene98467	PPI
MS.gene98467	MS.gene61499	PPI
MS.gene065627	MS.gene98467	PPI
MS.gene98467	MS.gene51804	PPI
MS.gene018745	MS.gene98467	PPI
MS.gene000629	MS.gene98467	PPI
MS.gene65546	MS.gene98467	PPI
MS.gene98467	MS.gene019165	PPI
MS.gene98467	MS.gene81194	PPI
MS.gene05319	MS.gene98467	PPI
MS.gene038098	MS.gene98467	PPI
MS.gene56991	MS.gene98467	PPI
MS.gene98467	MS.gene019001	PPI
MS.gene98467	MS.gene53904	PPI
MS.gene28545	MS.gene98467	PPI
MS.gene28718	MS.gene98467	PPI
MS.gene98467	MS.gene025675	PPI
MS.gene055560	MS.gene98467	PPI
MS.gene98467	MS.gene55209	PPI
MS.gene064966	MS.gene98467	PPI
MS.gene98467	MS.gene022929	PPI
MS.gene98616	MS.gene98467	PPI
MS.gene40828	MS.gene98467	PPI
MS.gene43924	MS.gene98467	PPI
MS.gene98467	MS.gene52349	PPI
MS.gene046089	MS.gene98467	PPI
MS.gene036423	MS.gene98467	PPI
MS.gene98467	MS.gene021647	PPI
MS.gene98467	MS.gene98756	PPI
MS.gene98467	MS.gene048342	PPI
MS.gene013644	MS.gene98467	PPI
MS.gene98467	MS.gene069624	PPI
MS.gene80362	MS.gene98467	PPI
MS.gene72520	MS.gene98467	PPI
MS.gene98467	MS.gene013890	PPI
MS.gene013193	MS.gene98467	PPI
MS.gene97410	MS.gene98467	PPI
MS.gene98467	MS.gene073582	PPI
MS.gene98467	MS.gene016719	PPI
MS.gene98467	MS.gene028714	PPI
MS.gene98467	MS.gene048706	PPI
MS.gene63743	MS.gene98467	PPI
MS.gene98467	MS.gene69586	PPI
MS.gene98467	MS.gene45083	PPI
MS.gene98467	MS.gene049561	PPI
MS.gene98467	MS.gene008658	PPI
MS.gene48477	MS.gene98467	PPI
MS.gene98467	MS.gene49057	PPI
MS.gene045875	MS.gene98467	PPI
MS.gene008861	MS.gene98467	PPI
MS.gene024405	MS.gene98467	PPI
MS.gene012748	MS.gene98467	PPI
MS.gene83979	MS.gene98467	PPI
MS.gene98467	MS.gene08708	PPI
MS.gene98467	MS.gene86275	PPI
MS.gene85295	MS.gene98467	PPI
MS.gene47792	MS.gene98467	PPI
MS.gene98471	MS.gene98467	PPI
MS.gene049610	MS.gene98467	PPI
MS.gene038676	MS.gene98467	PPI
MS.gene98467	MS.gene012889	PPI
MS.gene98467	MS.gene000506	PPI
MS.gene042651	MS.gene98467	PPI
MS.gene93396	MS.gene98467	PPI
MS.gene05576	MS.gene98467	PPI
MS.gene05231	MS.gene98467	PPI
MS.gene98467	MS.gene028716	PPI
MS.gene98467	MS.gene74639	PPI
MS.gene98467	MS.gene071133	PPI
MS.gene98467	MS.gene60266	PPI
MS.gene98467	MS.gene013644	PPI
MS.gene98467	MS.gene024522	PPI
MS.gene010656	MS.gene98467	PPI
MS.gene98467	MS.gene54051	PPI
MS.gene037049	MS.gene98467	PPI
MS.gene98467	MS.gene22111	PPI
MS.gene034643	MS.gene98467	PPI
MS.gene041264	MS.gene98467	PPI
MS.gene41979	MS.gene98467	PPI
MS.gene98467	MS.gene049610	PPI
MS.gene98467	MS.gene010290	PPI
MS.gene98467	MS.gene37955	PPI
MS.gene64130	MS.gene98467	PPI
MS.gene98467	MS.gene92517	PPI
MS.gene050679	MS.gene98467	PPI
MS.gene98467	MS.gene045875	PPI
MS.gene98467	MS.gene010890	PPI
MS.gene98467	MS.gene84790	PPI
MS.gene20246	MS.gene98467	PPI
MS.gene055223	MS.gene98467	PPI
MS.gene071784	MS.gene98467	PPI
MS.gene053747	MS.gene98467	PPI
MS.gene061579	MS.gene98467	PPI
MS.gene76420	MS.gene98467	PPI
MS.gene071320	MS.gene98467	PPI
MS.gene65471	MS.gene98467	PPI
MS.gene061850	MS.gene98467	PPI
MS.gene98467	MS.gene060788	PPI
MS.gene26433	MS.gene98467	PPI
MS.gene98467	MS.gene41643	PPI
MS.gene98467	MS.gene77990	PPI
MS.gene98467	MS.gene062511	PPI
MS.gene98467	MS.gene027994	PPI
MS.gene073582	MS.gene98467	PPI
MS.gene042559	MS.gene98467	PPI
MS.gene98467	MS.gene007022	PPI
MS.gene058889	MS.gene98467	PPI
MS.gene98467	MS.gene69584	PPI
MS.gene26038	MS.gene98467	PPI
MS.gene042027	MS.gene98467	PPI
MS.gene85308	MS.gene98467	PPI
MS.gene98467	MS.gene46353	PPI
MS.gene69490	MS.gene98467	PPI
MS.gene015248	MS.gene98467	PPI
MS.gene34812	MS.gene98467	PPI
MS.gene98467	MS.gene61651	PPI
MS.gene44083	MS.gene98467	PPI
MS.gene55682	MS.gene98467	PPI
MS.gene04970	MS.gene98467	PPI
MS.gene08106	MS.gene98467	PPI
MS.gene58419	MS.gene98467	PPI
MS.gene98467	MS.gene09023	PPI
MS.gene98467	MS.gene88393	PPI
MS.gene98467	MS.gene054508	PPI
MS.gene067340	MS.gene98467	PPI
MS.gene98467	MS.gene025987	PPI
MS.gene98467	MS.gene95960	PPI
MS.gene98467	MS.gene053373	PPI
MS.gene23521	MS.gene98467	PPI
MS.gene049512	MS.gene98467	PPI
MS.gene29406	MS.gene98467	PPI
MS.gene98467	MS.gene63150	PPI
MS.gene038623	MS.gene98467	PPI
MS.gene86275	MS.gene98467	PPI
MS.gene05357	MS.gene98467	PPI
MS.gene98467	MS.gene072852	PPI
MS.gene87529	MS.gene98467	PPI
MS.gene98467	MS.gene65474	PPI
MS.gene04134	MS.gene98467	PPI
MS.gene98467	MS.gene025401	PPI
MS.gene062067	MS.gene98467	PPI
MS.gene98467	MS.gene015093	PPI
MS.gene98467	MS.gene06164	PPI
MS.gene98467	MS.gene50392	PPI
MS.gene98467	MS.gene22730	PPI
MS.gene072852	MS.gene98467	PPI
MS.gene98467	MS.gene000379	PPI
MS.gene98467	MS.gene032299	PPI
MS.gene98467	MS.gene017586	PPI
MS.gene57044	MS.gene98467	PPI
MS.gene98467	MS.gene037634	PPI
MS.gene98467	MS.gene057828	PPI
MS.gene39956	MS.gene98467	PPI
MS.gene98467	MS.gene08606	PPI
MS.gene017586	MS.gene98467	PPI
MS.gene98467	MS.gene000640	PPI
MS.gene71637	MS.gene98467	PPI
MS.gene09589	MS.gene98467	PPI
MS.gene98467	MS.gene09517	PPI
MS.gene98467	MS.gene87845	PPI
MS.gene057828	MS.gene98467	PPI
MS.gene98467	MS.gene62249	PPI
MS.gene66650	MS.gene98467	PPI
MS.gene060386	MS.gene98467	PPI
MS.gene71588	MS.gene98467	PPI
MS.gene98467	MS.gene044729	PPI
MS.gene04749	MS.gene98467	PPI
MS.gene98467	MS.gene60390	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98467.t1	MTR_3g053920	50.000	226	58	3	1	171	55	280	1.08e-57	184
MS.gene98467.t1	MTR_8g463110	79.000	100	21	0	134	233	21	120	2.89e-34	129
MS.gene98467.t1	MTR_4g103530	32.927	164	72	4	1	133	1	157	1.76e-16	75.1
MS.gene98467.t1	MTR_2g061500	81.081	37	7	0	1	37	55	91	1.68e-13	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 76 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTACCGATACGTTGCAAATT+AGG	0.248569	5.4:-18961960	None:intergenic
CTGACGACGGTGTCCGTAAC+TGG	0.261198	5.4:+18961922	MS.gene98467:CDS
CCTATGCCTTGACCTACTTT+TGG	0.272981	5.4:-18961660	None:intergenic
GAATTTGCAGCAGTAGTAAA+AGG	0.292724	5.4:-18962314	None:intergenic
GATGAGGGAAATACAGTAAT+AGG	0.305593	5.4:+18962425	MS.gene98467:CDS
CACCTTCAGCAGTTACATTT+CGG	0.325416	5.4:-18962067	None:intergenic
CTGGTGCTTGGACTGTCTGC+TGG	0.392114	5.4:+18962284	MS.gene98467:CDS
CCTACTTGGCCTCTGGTGCT+TGG	0.396214	5.4:+18962272	MS.gene98467:CDS
CGCGGCACAGCTACGGGAAT+AGG	0.408134	5.4:-18962011	None:intergenic
GCCAAAGCAAAACAAGGTTC+TGG	0.414080	5.4:+18962179	MS.gene98467:CDS
GGTCCAATCTGCTTCCTACT+TGG	0.416973	5.4:+18962258	MS.gene98467:CDS
CTCTTACCGTCCTCTTCAAC+AGG	0.419316	5.4:+18962227	MS.gene98467:CDS
GCAAATTCTCAAGAGGAAAT+CGG	0.445460	5.4:+18962329	MS.gene98467:CDS
TCTGCTTCCTACTTGGCCTC+TGG	0.449798	5.4:+18962265	MS.gene98467:CDS
GCAGCAGTAGTAAAAGGAAA+TGG	0.452091	5.4:-18962308	None:intergenic
GTGATCGTGACCCTCTTGCC+TGG	0.454623	5.4:-18961435	None:intergenic
TCGGTACTGCTGCAACCAAC+AGG	0.460210	5.4:+18961976	MS.gene98467:CDS
GGTTCTGGTGCGAACTCTCC+AGG	0.468743	5.4:+18962194	MS.gene98467:CDS
TGAGATAAGCACCCCAGTTA+CGG	0.479656	5.4:-18961935	None:intergenic
ATGTCTCGCGCATGGAAGCC+AGG	0.480456	5.4:+18961417	MS.gene98467:CDS
GCAGACAGTCCAAGCACCAG+AGG	0.486586	5.4:-18962281	None:intergenic
CAGCAGCAACAATATTTGTA+TGG	0.488120	5.4:-18962034	None:intergenic
TGTAACTGCTGAAGGTGTAC+TGG	0.490437	5.4:+18962073	MS.gene98467:CDS
TCCTCTTCAACAGGTAACTC+AGG	0.492293	5.4:+18962236	MS.gene98467:CDS
TGCAACCAACAGGTGGATAC+AGG	0.492385	5.4:+18961986	MS.gene98467:CDS
TGATTTATCCAGCCAAAAGT+AGG	0.500370	5.4:+18961648	MS.gene98467:intron
ATTGTTGCTGCTGCCTCTGT+TGG	0.500615	5.4:+18962044	MS.gene98467:CDS
GTGTGGTGTGCTCGGACATA+CGG	0.504521	5.4:+18961866	MS.gene98467:CDS
CCAAGCACCAGAGGCCAAGT+AGG	0.508320	5.4:-18962272	None:intergenic
TAGGAACAAATGTTAGTCAT+GGG	0.515296	5.4:+18962444	MS.gene98467:CDS
ACATACGGACAAGGTGTGTC+CGG	0.515722	5.4:+18961881	MS.gene98467:CDS
ACCATCCTGTCATTGAAGCT+TGG	0.516139	5.4:-18962098	None:intergenic
GGTAAGAGATGTACCATGCC+TGG	0.518626	5.4:-18962212	None:intergenic
AGGCCAAGTAGGAAGCAGAT+TGG	0.522212	5.4:-18962261	None:intergenic
TGACGACGGTGTCCGTAACT+GGG	0.523857	5.4:+18961923	MS.gene98467:CDS
TGTATGGCGCGGCACAGCTA+CGG	0.530262	5.4:-18962018	None:intergenic
GAAGAAAATAAAGAGGATGC+TGG	0.533193	5.4:+18962361	MS.gene98467:CDS
TGGTTCCAAGCTTCAATGAC+AGG	0.533487	5.4:+18962093	MS.gene98467:CDS
GTATGGCGCGGCACAGCTAC+GGG	0.534441	5.4:-18962017	None:intergenic
GCTTTCAATTCAAACAGCTC+CGG	0.535106	5.4:-18961900	None:intergenic
TGTCACAGGTGTGGTGTGCT+CGG	0.535855	5.4:+18961858	MS.gene98467:intron
ATAGGAACAAATGTTAGTCA+TGG	0.543713	5.4:+18962443	MS.gene98467:CDS
ATGAATTGTCACCATTCTGA+AGG	0.545818	5.4:-18962385	None:intergenic
CCCTGAGTTACCTGTTGAAG+AGG	0.550310	5.4:-18962237	None:intergenic
CACATGCTGCATCAACTTTG+TGG	0.550332	5.4:-18961494	None:intergenic
AAGCCTAATTTGCAACGTAT+CGG	0.558114	5.4:+18961957	MS.gene98467:CDS
GCAGCATGTGTTCTCGATGA+AGG	0.567591	5.4:+18961507	MS.gene98467:CDS
TACTGCTGCAAATTCTCAAG+AGG	0.568886	5.4:+18962322	MS.gene98467:CDS
CTGAATTGAAGAAAATAAAG+AGG	0.569177	5.4:+18962354	MS.gene98467:CDS
TGGTGCGAACTCTCCAGGCA+TGG	0.581722	5.4:+18962199	MS.gene98467:CDS
CCAAAAGTAGGTCAAGGCAT+AGG	0.584813	5.4:+18961660	MS.gene98467:CDS
AGGATGCTGGCCCTTCAGAA+TGG	0.591615	5.4:+18962374	MS.gene98467:CDS
CGCATGGAAGCCAGGCAAGA+GGG	0.592982	5.4:+18961425	MS.gene98467:CDS
AAGTAGGTCAAGGCATAGGA+AGG	0.603236	5.4:+18961664	MS.gene98467:CDS
ATCCAGCCAAAAGTAGGTCA+AGG	0.604521	5.4:+18961654	MS.gene98467:intron
AGGATCCTGTATCCACCTGT+TGG	0.607557	5.4:-18961991	None:intergenic
TCCAAGCTTCAATGACAGGA+TGG	0.614971	5.4:+18962097	MS.gene98467:CDS
TTTGCTGCTGATGAGGATGA+GGG	0.616001	5.4:+18962410	MS.gene98467:CDS
GTGAGCGTATGTCTCGCGCA+TGG	0.619522	5.4:+18961409	None:intergenic
AGGAACAAATGTTAGTCATG+GGG	0.621613	5.4:+18962445	MS.gene98467:CDS
GGCCGAAATGTAACTGCTGA+AGG	0.622032	5.4:+18962065	MS.gene98467:CDS
GCGCATGGAAGCCAGGCAAG+AGG	0.622091	5.4:+18961424	MS.gene98467:CDS
GCAACAATATTTGTATGGCG+CGG	0.623113	5.4:-18962029	None:intergenic
GGAACAAATGTTAGTCATGG+GGG	0.626566	5.4:+18962446	MS.gene98467:CDS
GACGACGGTGTCCGTAACTG+GGG	0.635519	5.4:+18961924	MS.gene98467:CDS
TGAATTGTCACCATTCTGAA+GGG	0.638224	5.4:-18962384	None:intergenic
CCTCTTCAACAGGTAACTCA+GGG	0.640759	5.4:+18962237	MS.gene98467:CDS
GTACTGCTGCAACCAACAGG+TGG	0.653037	5.4:+18961979	MS.gene98467:CDS
ATGCTGCATCAACTTTGTGG+TGG	0.656754	5.4:-18961491	None:intergenic
TAGGCTGCCAAAGCAAAACA+AGG	0.657259	5.4:+18962173	MS.gene98467:intron
GAACAAATGTTAGTCATGGG+GGG	0.666834	5.4:+18962447	MS.gene98467:CDS
GAGTTACCTGTTGAAGAGGA+CGG	0.671052	5.4:-18962233	None:intergenic
TGTGCTCGGACATACGGACA+AGG	0.675926	5.4:+18961872	MS.gene98467:CDS
GGTCACGATCACTAAGTCTG+TGG	0.683213	5.4:+18961446	MS.gene98467:CDS
AGTTACATTTCGGCCAACAG+AGG	0.697810	5.4:-18962057	None:intergenic
TTTGAATTGAAAGCTGACGA+CGG	0.717213	5.4:+18961909	MS.gene98467:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACTTTAAATATGAAAAGCT+GGG	+	chr5.4:18961828-18961847	MS.gene98467:intron	20.0%
!!	TAACTTTAAATATGAAAAGC+TGG	+	chr5.4:18961827-18961846	MS.gene98467:intron	20.0%
!	CTGAATTGAAGAAAATAAAG+AGG	+	chr5.4:18962354-18962373	MS.gene98467:CDS	25.0%
	ATAGGAACAAATGTTAGTCA+TGG	+	chr5.4:18962443-18962462	MS.gene98467:CDS	30.0%
	TAGGAACAAATGTTAGTCAT+GGG	+	chr5.4:18962444-18962463	MS.gene98467:CDS	30.0%
	TGATAACTTTCATATCGTCA+TGG	+	chr5.4:18961542-18961561	MS.gene98467:intron	30.0%
	TTTGGCTGGATAAATCAAAA+GGG	-	chr5.4:18961645-18961664	None:intergenic	30.0%
!!	TTTTGGCTGGATAAATCAAA+AGG	-	chr5.4:18961646-18961665	None:intergenic	30.0%
	AAAAATCTATGTGGTTCAGC+GGG	-	chr5.4:18961602-18961621	None:intergenic	35.0%
	AAAAGGGTAAGCCATAAACT+TGG	-	chr5.4:18961629-18961648	None:intergenic	35.0%
	AGGAACAAATGTTAGTCATG+GGG	+	chr5.4:18962445-18962464	MS.gene98467:CDS	35.0%
	ATCACTGCAATCAAACATGA+TGG	+	chr5.4:18962137-18962156	MS.gene98467:intron	35.0%
	ATGAATTGTCACCATTCTGA+AGG	-	chr5.4:18962388-18962407	None:intergenic	35.0%
	CAAAAATCTATGTGGTTCAG+CGG	-	chr5.4:18961603-18961622	None:intergenic	35.0%
	CAGCAGCAACAATATTTGTA+TGG	-	chr5.4:18962037-18962056	None:intergenic	35.0%
	CATGTTTGATTGCAGTGATT+TGG	-	chr5.4:18962136-18962155	None:intergenic	35.0%
	GAAGAAAATAAAGAGGATGC+TGG	+	chr5.4:18962361-18962380	MS.gene98467:CDS	35.0%
	GAATTTGCAGCAGTAGTAAA+AGG	-	chr5.4:18962317-18962336	None:intergenic	35.0%
	GATGAGGGAAATACAGTAAT+AGG	+	chr5.4:18962425-18962444	MS.gene98467:CDS	35.0%
	GCAAATTCTCAAGAGGAAAT+CGG	+	chr5.4:18962329-18962348	MS.gene98467:CDS	35.0%
	TGAATTGTCACCATTCTGAA+GGG	-	chr5.4:18962387-18962406	None:intergenic	35.0%
	TGATTTATCCAGCCAAAAGT+AGG	+	chr5.4:18961648-18961667	MS.gene98467:intron	35.0%
	TTTGAATTGAAAGCTGACGA+CGG	+	chr5.4:18961909-18961928	MS.gene98467:CDS	35.0%
!	AAGCCTAATTTGCAACGTAT+CGG	+	chr5.4:18961957-18961976	MS.gene98467:CDS	35.0%
!	GCTGAACCACATAGATTTTT+GGG	+	chr5.4:18961602-18961621	MS.gene98467:intron	35.0%
!!	CAAAAGTACCATTGTTAGCA+CGG	-	chr5.4:18961800-18961819	None:intergenic	35.0%
!!!	GATTTTTGGGTCCAAGTTTA+TGG	+	chr5.4:18961615-18961634	MS.gene98467:intron	35.0%
	AAAAAAGGGAACGACATCAG+GGG	-	chr5.4:18961577-18961596	None:intergenic	40.0%
	ACAAAAAAGGGAACGACATC+AGG	-	chr5.4:18961579-18961598	None:intergenic	40.0%
	ACTTTCATATCGTCATGGAC+CGG	+	chr5.4:18961547-18961566	MS.gene98467:intron	40.0%
	AGATACGCATATAGGAACTG+TGG	-	chr5.4:18961731-18961750	None:intergenic	40.0%
	CAAAAAAGGGAACGACATCA+GGG	-	chr5.4:18961578-18961597	None:intergenic	40.0%
	CACCTTCAGCAGTTACATTT+CGG	-	chr5.4:18962070-18962089	None:intergenic	40.0%
	CTTGGACCCAAAAATCTATG+TGG	-	chr5.4:18961611-18961630	None:intergenic	40.0%
	GAACAAATGTTAGTCATGGG+GGG	+	chr5.4:18962447-18962466	MS.gene98467:CDS	40.0%
	GCAACAATATTTGTATGGCG+CGG	-	chr5.4:18962032-18962051	None:intergenic	40.0%
	GCAGCAGTAGTAAAAGGAAA+TGG	-	chr5.4:18962311-18962330	None:intergenic	40.0%
	GCTTTCAATTCAAACAGCTC+CGG	-	chr5.4:18961903-18961922	None:intergenic	40.0%
	GGAACAAATGTTAGTCATGG+GGG	+	chr5.4:18962446-18962465	MS.gene98467:CDS	40.0%
	TACTGCTGCAAATTCTCAAG+AGG	+	chr5.4:18962322-18962341	MS.gene98467:CDS	40.0%
	TGCAACACAGATACGCATAT+AGG	-	chr5.4:18961739-18961758	None:intergenic	40.0%
!	CAAGGCATAGGAAGGTTTTT+AGG	+	chr5.4:18961672-18961691	MS.gene98467:CDS	40.0%
!	CGCTGAACCACATAGATTTT+TGG	+	chr5.4:18961601-18961620	MS.gene98467:intron	40.0%
!	GTACCGATACGTTGCAAATT+AGG	-	chr5.4:18961963-18961982	None:intergenic	40.0%
!	TTCATCTTTTGCTGCTGATG+AGG	+	chr5.4:18962403-18962422	MS.gene98467:CDS	40.0%
!!	GGTACTTTTAAGTCGTACGA+TGG	+	chr5.4:18961693-18961712	MS.gene98467:intron	40.0%
!!!	ACCAGAACCTTGTTTTGCTT+TGG	-	chr5.4:18962183-18962202	None:intergenic	40.0%
	AAGTAGGTCAAGGCATAGGA+AGG	+	chr5.4:18961664-18961683	MS.gene98467:CDS	45.0%
	ACCATCCTGTCATTGAAGCT+TGG	-	chr5.4:18962101-18962120	None:intergenic	45.0%
	AGTTACATTTCGGCCAACAG+AGG	-	chr5.4:18962060-18962079	None:intergenic	45.0%
	ATCCAGCCAAAAGTAGGTCA+AGG	+	chr5.4:18961654-18961673	MS.gene98467:intron	45.0%
	ATGCTGCATCAACTTTGTGG+TGG	-	chr5.4:18961494-18961513	None:intergenic	45.0%
	CACATGCTGCATCAACTTTG+TGG	-	chr5.4:18961497-18961516	None:intergenic	45.0%
	CCAAAAGTAGGTCAAGGCAT+AGG	+	chr5.4:18961660-18961679	MS.gene98467:CDS	45.0%
	CCTCTTCAACAGGTAACTCA+GGG	+	chr5.4:18962237-18962256	MS.gene98467:CDS	45.0%
	CTGTTCCCTTGAAACAAGAG+TGG	+	chr5.4:18961769-18961788	MS.gene98467:intron	45.0%
	GAGTTACCTGTTGAAGAGGA+CGG	-	chr5.4:18962236-18962255	None:intergenic	45.0%
	GCCAAAGCAAAACAAGGTTC+TGG	+	chr5.4:18962179-18962198	MS.gene98467:CDS	45.0%
	TAGGCTGCCAAAGCAAAACA+AGG	+	chr5.4:18962173-18962192	MS.gene98467:intron	45.0%
	TCCAAGCTTCAATGACAGGA+TGG	+	chr5.4:18962097-18962116	MS.gene98467:CDS	45.0%
	TCCTCTTCAACAGGTAACTC+AGG	+	chr5.4:18962236-18962255	MS.gene98467:CDS	45.0%
	TGAGATAAGCACCCCAGTTA+CGG	-	chr5.4:18961938-18961957	None:intergenic	45.0%
	TGGTTCAGCGGGACAAAAAA+GGG	-	chr5.4:18961591-18961610	None:intergenic	45.0%
	TGGTTCCAAGCTTCAATGAC+AGG	+	chr5.4:18962093-18962112	MS.gene98467:CDS	45.0%
	TTTGCTGCTGATGAGGATGA+GGG	+	chr5.4:18962410-18962429	MS.gene98467:CDS	45.0%
!	ACACGCCACTCTTGTTTCAA+GGG	-	chr5.4:18961777-18961796	None:intergenic	45.0%
!	CCTATGCCTTGACCTACTTT+TGG	-	chr5.4:18961663-18961682	None:intergenic	45.0%
!	TGATGGTCTTGCTGCTCAAT+AGG	+	chr5.4:18962154-18962173	MS.gene98467:intron	45.0%
!	TGTAACTGCTGAAGGTGTAC+TGG	+	chr5.4:18962073-18962092	MS.gene98467:CDS	45.0%
!	TTTTGCTGCTGATGAGGATG+AGG	+	chr5.4:18962409-18962428	MS.gene98467:CDS	45.0%
!!!	AGCTGGGTGTTTTTTGTCAC+AGG	+	chr5.4:18961844-18961863	MS.gene98467:intron	45.0%
!!!	GGTGTTTTTTGTCACAGGTG+TGG	+	chr5.4:18961849-18961868	MS.gene98467:intron	45.0%
	ACATACGGACAAGGTGTGTC+CGG	+	chr5.4:18961881-18961900	MS.gene98467:CDS	50.0%
	AGGATCCTGTATCCACCTGT+TGG	-	chr5.4:18961994-18962013	None:intergenic	50.0%
	AGGCCAAGTAGGAAGCAGAT+TGG	-	chr5.4:18962264-18962283	None:intergenic	50.0%
	ATTGTTGCTGCTGCCTCTGT+TGG	+	chr5.4:18962044-18962063	MS.gene98467:CDS	50.0%
	CCCTGAGTTACCTGTTGAAG+AGG	-	chr5.4:18962240-18962259	None:intergenic	50.0%
	CTCTTACCGTCCTCTTCAAC+AGG	+	chr5.4:18962227-18962246	MS.gene98467:CDS	50.0%
	GAACGACATCAGGGGAAATC+CGG	-	chr5.4:18961569-18961588	None:intergenic	50.0%
	GCAGCATGTGTTCTCGATGA+AGG	+	chr5.4:18961507-18961526	MS.gene98467:CDS	50.0%
	GGCCGAAATGTAACTGCTGA+AGG	+	chr5.4:18962065-18962084	MS.gene98467:CDS	50.0%
	GGTAAGAGATGTACCATGCC+TGG	-	chr5.4:18962215-18962234	None:intergenic	50.0%
	GGTCACGATCACTAAGTCTG+TGG	+	chr5.4:18961446-18961465	MS.gene98467:CDS	50.0%
	GGTCCAATCTGCTTCCTACT+TGG	+	chr5.4:18962258-18962277	MS.gene98467:CDS	50.0%
	GTGGTTCAGCGGGACAAAAA+AGG	-	chr5.4:18961592-18961611	None:intergenic	50.0%
	GTGTTCTCGATGAAGGTCTG+TGG	+	chr5.4:18961514-18961533	MS.gene98467:intron	50.0%
	TGCAACCAACAGGTGGATAC+AGG	+	chr5.4:18961986-18962005	MS.gene98467:CDS	50.0%
!	GACACGCCACTCTTGTTTCA+AGG	-	chr5.4:18961778-18961797	None:intergenic	50.0%
!!	TGCCTTGACCTACTTTTGGC+TGG	-	chr5.4:18961659-18961678	None:intergenic	50.0%
	AGGATGCTGGCCCTTCAGAA+TGG	+	chr5.4:18962374-18962393	MS.gene98467:CDS	55.0%
	GTACTGCTGCAACCAACAGG+TGG	+	chr5.4:18961979-18961998	MS.gene98467:CDS	55.0%
	GTGTGGTGTGCTCGGACATA+CGG	+	chr5.4:18961866-18961885	MS.gene98467:CDS	55.0%
	TCGGTACTGCTGCAACCAAC+AGG	+	chr5.4:18961976-18961995	MS.gene98467:CDS	55.0%
	TCTGCTTCCTACTTGGCCTC+TGG	+	chr5.4:18962265-18962284	MS.gene98467:CDS	55.0%
	TGACGACGGTGTCCGTAACT+GGG	+	chr5.4:18961923-18961942	MS.gene98467:CDS	55.0%
	TGGCGTGTCCGTGCTAACAA+TGG	+	chr5.4:18961789-18961808	MS.gene98467:intron	55.0%
	TGTCACAGGTGTGGTGTGCT+CGG	+	chr5.4:18961858-18961877	MS.gene98467:intron	55.0%
	TGTGCTCGGACATACGGACA+AGG	+	chr5.4:18961872-18961891	MS.gene98467:CDS	55.0%
	ATGTCTCGCGCATGGAAGCC+AGG	+	chr5.4:18961417-18961436	MS.gene98467:CDS	60.0%
	CCAAGCACCAGAGGCCAAGT+AGG	-	chr5.4:18962275-18962294	None:intergenic	60.0%
	CCTACTTGGCCTCTGGTGCT+TGG	+	chr5.4:18962272-18962291	MS.gene98467:CDS	60.0%
	CGCATGGAAGCCAGGCAAGA+GGG	+	chr5.4:18961425-18961444	MS.gene98467:CDS	60.0%
	CTGACGACGGTGTCCGTAAC+TGG	+	chr5.4:18961922-18961941	MS.gene98467:CDS	60.0%
	CTGGTGCTTGGACTGTCTGC+TGG	+	chr5.4:18962284-18962303	MS.gene98467:CDS	60.0%
	GACGACGGTGTCCGTAACTG+GGG	+	chr5.4:18961924-18961943	MS.gene98467:CDS	60.0%
	GCAGACAGTCCAAGCACCAG+AGG	-	chr5.4:18962284-18962303	None:intergenic	60.0%
	GTGATCGTGACCCTCTTGCC+TGG	-	chr5.4:18961438-18961457	None:intergenic	60.0%
	TGGTGCGAACTCTCCAGGCA+TGG	+	chr5.4:18962199-18962218	MS.gene98467:CDS	60.0%
	TGTATGGCGCGGCACAGCTA+CGG	-	chr5.4:18962021-18962040	None:intergenic	60.0%
!	GGTTCTGGTGCGAACTCTCC+AGG	+	chr5.4:18962194-18962213	MS.gene98467:CDS	60.0%
	CGCGGCACAGCTACGGGAAT+AGG	-	chr5.4:18962014-18962033	None:intergenic	65.0%
	GCGCATGGAAGCCAGGCAAG+AGG	+	chr5.4:18961424-18961443	MS.gene98467:CDS	65.0%
	GTATGGCGCGGCACAGCTAC+GGG	-	chr5.4:18962020-18962039	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	18961417	18962481	18961417	ID=MS.gene98467
chr5.4	mRNA	18961417	18962481	18961417	ID=MS.gene98467.t1;Parent=MS.gene98467
chr5.4	exon	18961417	18961528	18961417	ID=MS.gene98467.t1.exon1;Parent=MS.gene98467.t1
chr5.4	CDS	18961417	18961528	18961417	ID=cds.MS.gene98467.t1;Parent=MS.gene98467.t1
chr5.4	exon	18961660	18961693	18961660	ID=MS.gene98467.t1.exon2;Parent=MS.gene98467.t1
chr5.4	CDS	18961660	18961693	18961660	ID=cds.MS.gene98467.t1;Parent=MS.gene98467.t1
chr5.4	exon	18961866	18962118	18961866	ID=MS.gene98467.t1.exon3;Parent=MS.gene98467.t1
chr5.4	CDS	18961866	18962118	18961866	ID=cds.MS.gene98467.t1;Parent=MS.gene98467.t1
chr5.4	exon	18962176	18962481	18962176	ID=MS.gene98467.t1.exon4;Parent=MS.gene98467.t1
chr5.4	CDS	18962176	18962481	18962176	ID=cds.MS.gene98467.t1;Parent=MS.gene98467.t1

Gene Sequence

>MS.gene98467

ATGTCTCGCGCATGGAAGCCAGGCAAGAGGGTCACGATCACTAAGTCTGTGGTTAACTGCTATCTGTTTCAGTTCCACCACAAAGTTGATGCAGCATGTGTTCTCGATGAAGGTCTGTGGCTTTATGATAACTTTCATATCGTCATGGACCGGATTTCCCCTGATGTCGTTCCCTTTTTTGTCCCGCTGAACCACATAGATTTTTGGGTCCAAGTTTATGGCTTACCCTTTTGATTTATCCAGCCAAAAGTAGGTCAAGGCATAGGAAGGTTTTTAGGTACTTTTAAGTCGTACGATGGTCGTAATTCAATCCACAGTTCCTATATGCGTATCTGTGTTGCAATTGATGTGACTGTTCCCTTGAAACAAGAGTGGCGTGTCCGTGCTAACAATGGTACTTTTGTTACTGTTAACTTTAAATATGAAAAGCTGGGTGTTTTTTGTCACAGGTGTGGTGTGCTCGGACATACGGACAAGGTGTGTCCGGAGCTGTTTGAATTGAAAGCTGACGACGGTGTCCGTAACTGGGGTGCTTATCTCAAGCCTAATTTGCAACGTATCGGTACTGCTGCAACCAACAGGTGGATACAGGATCCTATTCCCGTAGCTGTGCCGCGCCATACAAATATTGTTGCTGCTGCCTCTGTTGGCCGAAATGTAACTGCTGAAGGTGTACTGGTTCCAAGCTTCAATGACAGGATGGTAGCTGTACAGAACCAAATCACTGCAATCAAACATGATGGTCTTGCTGCTCAATAGGCTGCCAAAGCAAAACAAGGTTCTGGTGCGAACTCTCCAGGCATGGTACATCTCTTACCGTCCTCTTCAACAGGTAACTCAGGGTCCAATCTGCTTCCTACTTGGCCTCTGGTGCTTGGACTGTCTGCTGGTCCATTTCCTTTTACTACTGCTGCAAATTCTCAAGAGGAAATCGGCTCTGAATTGAAGAAAATAAAGAGGATGCTGGCCCTTCAGAATGGTGACAATTCATCTTTTGCTGCTGATGAGGATGAGGGAAATACAGTAATAGGAACAAATGTTAGTCATGGGGGGATGATGATATGA

Protein sequence

>MS.gene98467.t1

MSRAWKPGKRVTITKSVVNCYLFQFHHKVDAACVLDEAKSRSRHRKVFRCGVLGHTDKVCPELFELKADDGVRNWGAYLKPNLQRIGTAATNRWIQDPIPVAVPRHTNIVAAASVGRNVTAEGVLVPSFNDRMAAKAKQGSGANSPGMVHLLPSSSTGNSGSNLLPTWPLVLGLSAGPFPFTTAANSQEEIGSELKKIKRMLALQNGDNSSFAADEDEGNTVIGTNVSHGGMMI