Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010290.t1 | PNX72859.1 | 35.4 | 404 | 169 | 8 | 1 | 339 | 123 | 499 | 5.10E-54 | 221.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010290.t1 | A0A2K3L2W5 | 35.4 | 404 | 169 | 8 | 1 | 339 | 123 | 499 | 3.7e-54 | 221.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010290.t1 | MTR_3g053920 | 30.462 | 325 | 142 | 7 | 3 | 293 | 6 | 280 | 2.30e-43 | 152 |
| MS.gene010290.t1 | MTR_2g061500 | 36.800 | 125 | 47 | 2 | 2 | 94 | 5 | 129 | 2.44e-20 | 86.7 |
| MS.gene010290.t1 | MTR_6g033215 | 29.586 | 169 | 85 | 2 | 21 | 155 | 117 | 285 | 3.60e-18 | 84.3 |
| MS.gene010290.t1 | MTR_0010s0370 | 30.114 | 176 | 85 | 4 | 4 | 142 | 3 | 177 | 3.73e-18 | 82.0 |
| MS.gene010290.t1 | MTR_0010s0350 | 30.114 | 176 | 85 | 4 | 4 | 142 | 3 | 177 | 3.73e-18 | 82.0 |
| MS.gene010290.t1 | MTR_4g103530 | 44.048 | 84 | 45 | 1 | 31 | 112 | 10 | 93 | 1.11e-17 | 80.9 |
| MS.gene010290.t1 | MTR_6g053230 | 29.231 | 195 | 104 | 10 | 9 | 192 | 21 | 192 | 3.72e-14 | 73.9 |
| MS.gene010290.t1 | MTR_7g011710 | 54.386 | 57 | 26 | 0 | 48 | 104 | 29 | 85 | 1.80e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 101 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTAACTTTCTTGATATT+TGG | 0.063914 | 5.4:-47650002 | MS.gene010290:CDS |
| CACTGTTTGTCGAGGAATTA+AGG | 0.177097 | 5.4:+47649321 | None:intergenic |
| GGGACTGTTGGGATTGATTT+AGG | 0.197835 | 5.4:-47649163 | MS.gene010290:CDS |
| AACAGACATATCAAACTTTA+TGG | 0.217964 | 5.4:+47649435 | None:intergenic |
| CCTTAACTTTCTTGATATTT+GGG | 0.221031 | 5.4:-47650001 | MS.gene010290:CDS |
| CAAGTCCACAATCTGCCTTT+TGG | 0.314774 | 5.4:-47649976 | MS.gene010290:CDS |
| GCTATGCAAGTGGATGAATT+AGG | 0.351606 | 5.4:-47649184 | MS.gene010290:CDS |
| TCATGCTATTGCTCAACATC+TGG | 0.354492 | 5.4:-47649932 | MS.gene010290:CDS |
| GCAATAGCATGACCGACTTT+TGG | 0.361528 | 5.4:+47649943 | None:intergenic |
| GCGAATTCAATGGTAGTTCT+AGG | 0.370560 | 5.4:-47649493 | MS.gene010290:CDS |
| TAGGTTCTGTTGATGTTAGT+GGG | 0.375575 | 5.4:-47649144 | MS.gene010290:CDS |
| CTTTGCGAGGATCAGGCTTA+AGG | 0.381261 | 5.4:+47649650 | None:intergenic |
| CCCAAATATCAAGAAAGTTA+AGG | 0.385422 | 5.4:+47650001 | None:intergenic |
| TGATGATGGAGTGCGAGGTT+GGG | 0.396657 | 5.4:-47649680 | MS.gene010290:CDS |
| ATGTGAATTGTTGTTTGATA+AGG | 0.402985 | 5.4:-47649707 | MS.gene010290:CDS |
| TTAGGTTCTGTTGATGTTAG+TGG | 0.403661 | 5.4:-47649145 | MS.gene010290:CDS |
| CCAAATATCAAGAAAGTTAA+GGG | 0.409701 | 5.4:+47650002 | None:intergenic |
| ATTCTTGACCACTGCTTAGT+TGG | 0.410854 | 5.4:-47650253 | MS.gene010290:CDS |
| TAATAGGTGGTTACGCGATC+CGG | 0.412621 | 5.4:-47649611 | MS.gene010290:CDS |
| GGCCTTACCCTCAGTGATGC+TGG | 0.416985 | 5.4:-47650316 | MS.gene010290:CDS |
| ACTGTTTGTCGAGGAATTAA+GGG | 0.420044 | 5.4:+47649322 | None:intergenic |
| TGGGTACTGCTGCAAATAAT+AGG | 0.424112 | 5.4:-47649627 | MS.gene010290:CDS |
| GTACCCACTTTGCGAGGATC+AGG | 0.425432 | 5.4:+47649643 | None:intergenic |
| ATAGCAATGTTGTCGGCGTT+TGG | 0.425654 | 5.4:+47650274 | None:intergenic |
| GCGCATCACCAGGAGCTTCA+AGG | 0.426971 | 5.4:+47649293 | None:intergenic |
| TTGATGATGGAGTGCGAGGT+TGG | 0.427732 | 5.4:-47649681 | MS.gene010290:CDS |
| ATCGTACACCCACGGTCCTT+TGG | 0.429955 | 5.4:+47650080 | None:intergenic |
| TGCAGGTACATCAACTTTGC+TGG | 0.439086 | 5.4:-47649380 | MS.gene010290:CDS |
| CTATGCAAGTGGATGAATTA+GGG | 0.444092 | 5.4:-47649183 | MS.gene010290:CDS |
| ACCATGGAAATCAATCTTGA+TGG | 0.452062 | 5.4:-47650337 | MS.gene010290:CDS |
| TTTGATAAGGATGTTGATGA+TGG | 0.456262 | 5.4:-47649694 | MS.gene010290:CDS |
| CAGACTTGAAGAAGCGTAAG+AGG | 0.463326 | 5.4:-47649237 | MS.gene010290:CDS |
| TATGGCGGTAACAGAAAGAT+TGG | 0.466014 | 5.4:-47648226 | MS.gene010290:CDS |
| TGGATGAATTAGGGACTGTT+GGG | 0.475281 | 5.4:-47649174 | MS.gene010290:CDS |
| GACATCTTTCGCAACCATAC+CGG | 0.484033 | 5.4:+47650026 | None:intergenic |
| GTGGATGAATTAGGGACTGT+TGG | 0.485533 | 5.4:-47649175 | MS.gene010290:CDS |
| TTCTGTTGATGTTAGTGGGG+GGG | 0.490426 | 5.4:-47649140 | MS.gene010290:CDS |
| AGCGACACGCCTTGTCAGTA+AGG | 0.498559 | 5.4:+47650224 | None:intergenic |
| AGGTTCTGTTGATGTTAGTG+GGG | 0.498994 | 5.4:-47649143 | MS.gene010290:CDS |
| TTGACCACTGCTTAGTTGGA+AGG | 0.503213 | 5.4:-47650249 | MS.gene010290:CDS |
| TTCCAGCATCACTGAGGGTA+AGG | 0.504961 | 5.4:+47650314 | None:intergenic |
| TGACCACTGCTTAGTTGGAA+GGG | 0.506422 | 5.4:-47650248 | MS.gene010290:CDS |
| GATGATGGAGTGCGAGGTTG+GGG | 0.507271 | 5.4:-47649679 | MS.gene010290:CDS |
| CGCATCACCAGGAGCTTCAA+GGG | 0.508725 | 5.4:+47649294 | None:intergenic |
| TTTGGTTGAATAAAACCAAA+AGG | 0.513707 | 5.4:+47649961 | None:intergenic |
| CTGAACCTCTGAAACAAGAA+TGG | 0.520329 | 5.4:-47649834 | MS.gene010290:CDS |
| TTAACAGCTTGCGCATCACC+AGG | 0.527023 | 5.4:+47649283 | None:intergenic |
| GTGCTTGCCCTTGAAGCTCC+TGG | 0.527733 | 5.4:-47649301 | MS.gene010290:CDS |
| GGTTCTGTTGATGTTAGTGG+GGG | 0.528065 | 5.4:-47649142 | MS.gene010290:CDS |
| CAATGGTAGTTCTAGGAGGA+AGG | 0.528927 | 5.4:-47649486 | MS.gene010290:CDS |
| GCAAGCTGTTAACAATGAAA+AGG | 0.531518 | 5.4:-47649272 | MS.gene010290:CDS |
| AACAATGAAAAGGAAAGTGC+TGG | 0.533095 | 5.4:-47649262 | MS.gene010290:CDS |
| ATACGCCATTCTTGTTTCAG+AGG | 0.535300 | 5.4:+47649829 | None:intergenic |
| GTTTCAGAGGTTCAGACACA+TGG | 0.535354 | 5.4:+47649842 | None:intergenic |
| CCAGAAAAGAACAATACTGC+TGG | 0.535785 | 5.4:-47649346 | MS.gene010290:CDS |
| GTCAAGAATAGCAATGTTGT+CGG | 0.541420 | 5.4:+47650267 | None:intergenic |
| GCCATCAAGATTGATTTCCA+TGG | 0.544570 | 5.4:+47650336 | None:intergenic |
| GGAACGGATTCTACCCGGTA+TGG | 0.544991 | 5.4:-47650040 | MS.gene010290:CDS |
| CATGCTATTGCTCAACATCT+GGG | 0.545756 | 5.4:-47649931 | MS.gene010290:CDS |
| GAACCAACATCAGCCTTCAC+CGG | 0.547975 | 5.4:+47649592 | None:intergenic |
| AAGTTCACAGGCGAATTCAA+TGG | 0.553234 | 5.4:-47649503 | MS.gene010290:CDS |
| AACAAGAATGGCGTATCAGA+AGG | 0.553301 | 5.4:-47649822 | MS.gene010290:CDS |
| GTGGTTACGCGATCCGGTGA+AGG | 0.556779 | 5.4:-47649605 | MS.gene010290:CDS |
| AACATTATACTAAATGCTGC+AGG | 0.556954 | 5.4:-47649397 | MS.gene010290:CDS |
| ACATCTTTCGCAACCATACC+GGG | 0.558074 | 5.4:+47650027 | None:intergenic |
| TAAAACCAAAAGGCAGATTG+TGG | 0.562828 | 5.4:+47649971 | None:intergenic |
| AGTATTTGCTGAAAGTTCAC+AGG | 0.565092 | 5.4:-47649515 | MS.gene010290:CDS |
| CTTGAAGAAGCGTAAGAGGA+AGG | 0.566229 | 5.4:-47649233 | MS.gene010290:CDS |
| CAGTTCGTTCATGAAGCTGA+AGG | 0.577794 | 5.4:-47649872 | MS.gene010290:CDS |
| GTTCTGTTGATGTTAGTGGG+GGG | 0.579604 | 5.4:-47649141 | MS.gene010290:CDS |
| GCAGCAGTACCCACTTTGCG+AGG | 0.595311 | 5.4:+47649637 | None:intergenic |
| GATCCGGTGAAGGCTGATGT+TGG | 0.596783 | 5.4:-47649595 | MS.gene010290:CDS |
| AAGCCTGATCCTCGCAAAGT+GGG | 0.597152 | 5.4:-47649646 | MS.gene010290:CDS |
| GAATGGCGTATCAGAAGGGA+AGG | 0.598254 | 5.4:-47649817 | MS.gene010290:CDS |
| CGATGGCTGTAACATGGTGG+TGG | 0.604677 | 5.4:-47650061 | MS.gene010290:CDS |
| TAAGCCTGATCCTCGCAAAG+TGG | 0.608732 | 5.4:-47649647 | MS.gene010290:CDS |
| GTGGTGGAACGGATTCTACC+CGG | 0.621201 | 5.4:-47650045 | MS.gene010290:CDS |
| ACAAGAATGGCGTATCAGAA+GGG | 0.621468 | 5.4:-47649821 | MS.gene010290:CDS |
| TAATGTTGTACAAGAGAGTG+TGG | 0.626992 | 5.4:-47649206 | MS.gene010290:CDS |
| CGTGATTCCAGCATCACTGA+GGG | 0.627625 | 5.4:+47650309 | None:intergenic |
| AGGGCAAGCACTGTTTGTCG+AGG | 0.628864 | 5.4:+47649313 | None:intergenic |
| GCTGAAAATGTATTGACCAA+AGG | 0.631150 | 5.4:-47650096 | MS.gene010290:CDS |
| GGTTTCTAGTGCAGGTATGG+CGG | 0.632581 | 5.4:-47648241 | MS.gene010290:intron |
| CAAATATCAAGAAAGTTAAG+GGG | 0.634262 | 5.4:+47650003 | None:intergenic |
| TGCTGGAATCACGATAAACA+TGG | 0.637768 | 5.4:-47650299 | MS.gene010290:CDS |
| ATGTATTGACCAAAGGACCG+TGG | 0.638932 | 5.4:-47650089 | MS.gene010290:CDS |
| GCTGTAACATGGTGGTGGAA+CGG | 0.639798 | 5.4:-47650056 | MS.gene010290:CDS |
| AGAGAGTGTGGCTATGCAAG+TGG | 0.641651 | 5.4:-47649194 | MS.gene010290:CDS |
| TGTATTGACCAAAGGACCGT+GGG | 0.644547 | 5.4:-47650088 | MS.gene010290:CDS |
| GGTGTACGATGGCTGTAACA+TGG | 0.646268 | 5.4:-47650067 | MS.gene010290:CDS |
| TGGAAGGGTCCTTACTGACA+AGG | 0.650926 | 5.4:-47650233 | MS.gene010290:CDS |
| TGGCGTATCAGAAGGGAAGG+AGG | 0.654691 | 5.4:-47649814 | MS.gene010290:intron |
| AAATATCAAGAAAGTTAAGG+GGG | 0.671086 | 5.4:+47650004 | None:intergenic |
| TTACAGCCATCGTACACCCA+CGG | 0.679543 | 5.4:+47650072 | None:intergenic |
| GATGTTGATGATGGAGTGCG+AGG | 0.679922 | 5.4:-47649685 | MS.gene010290:CDS |
| GGACCCTTCCAACTAAGCAG+TGG | 0.680574 | 5.4:+47650245 | None:intergenic |
| AAAGGACCGTGGGTGTACGA+TGG | 0.685131 | 5.4:-47650078 | MS.gene010290:CDS |
| AATTCAATGGTAGTTCTAGG+AGG | 0.688254 | 5.4:-47649490 | MS.gene010290:CDS |
| GTACTGCTGCAAATAATAGG+TGG | 0.695150 | 5.4:-47649624 | MS.gene010290:CDS |
| TCGTGATTCCAGCATCACTG+AGG | 0.695246 | 5.4:+47650308 | None:intergenic |
| GTACGATGGCTGTAACATGG+TGG | 0.739222 | 5.4:-47650064 | MS.gene010290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAATTTAAAAGTTCTTTT+AGG | + | chr5.4:47650232-47650251 | None:intergenic | 15.0% |
| !! | AGTTCCAAAATTAAAATATC+TGG | - | chr5.4:47649559-47649578 | MS.gene010290:CDS | 20.0% |
| !! | GATTAAATTGGAATAAGAAT+CGG | + | chr5.4:47648417-47648436 | None:intergenic | 20.0% |
| !!! | TTGATTGATATTTTTATGGA+AGG | - | chr5.4:47650019-47650038 | MS.gene010290:CDS | 20.0% |
| ! | AAATATCAAGAAAGTTAAGG+GGG | + | chr5.4:47648543-47648562 | None:intergenic | 25.0% |
| ! | AACAGACATATCAAACTTTA+TGG | + | chr5.4:47649112-47649131 | None:intergenic | 25.0% |
| ! | ACATCATGTTCATCAAATAT+AGG | + | chr5.4:47649456-47649475 | None:intergenic | 25.0% |
| ! | ATGATATTGTCTCAAATTGT+TGG | - | chr5.4:47650281-47650300 | MS.gene010290:CDS | 25.0% |
| ! | ATTTGATGAACATGATGTAA+CGG | - | chr5.4:47649458-47649477 | MS.gene010290:CDS | 25.0% |
| ! | CAAATATCAAGAAAGTTAAG+GGG | + | chr5.4:47648544-47648563 | None:intergenic | 25.0% |
| ! | CCAAATATCAAGAAAGTTAA+GGG | + | chr5.4:47648545-47648564 | None:intergenic | 25.0% |
| ! | CCTTAACTTTCTTGATATTT+GGG | - | chr5.4:47648543-47648562 | MS.gene010290:intron | 25.0% |
| ! | CTAATAATATTTCCTTACCT+TGG | - | chr5.4:47649885-47649904 | MS.gene010290:CDS | 25.0% |
| ! | TGATATTGTCTCAAATTGTT+GGG | - | chr5.4:47650282-47650301 | MS.gene010290:CDS | 25.0% |
| ! | TTTACATGGTTCAAAAGTTT+AGG | - | chr5.4:47650049-47650068 | MS.gene010290:CDS | 25.0% |
| ! | TTTGGTTGAATAAAACCAAA+AGG | + | chr5.4:47648586-47648605 | None:intergenic | 25.0% |
| !! | AAACTTTTGAACCATGTAAA+AGG | + | chr5.4:47650049-47650068 | None:intergenic | 25.0% |
| !! | AACAATTTGAGACAATATCA+TGG | + | chr5.4:47650282-47650301 | None:intergenic | 25.0% |
| !! | CTTTTAAATTTGAAAATGCG+TGG | - | chr5.4:47650239-47650258 | MS.gene010290:CDS | 25.0% |
| !! | TCATGATTAACACATTTTGT+TGG | + | chr5.4:47649006-47649025 | None:intergenic | 25.0% |
| !!! | ATAAGTAGAGTTTTTAGCAT+CGG | + | chr5.4:47648980-47648999 | None:intergenic | 25.0% |
| !!! | ATGTGAATTGTTGTTTGATA+AGG | - | chr5.4:47648837-47648856 | MS.gene010290:intron | 25.0% |
| !!! | CATTGACTTCAACATTTATA+TGG | + | chr5.4:47649772-47649791 | None:intergenic | 25.0% |
| !!! | CGAACCAGATATTTTAATTT+TGG | + | chr5.4:47649566-47649585 | None:intergenic | 25.0% |
| !!! | GTTTTTAGATATGAAAGTCT+GGG | - | chr5.4:47648769-47648788 | MS.gene010290:intron | 25.0% |
| !!! | TGGGTTGATTGATATTTTTA+TGG | - | chr5.4:47650015-47650034 | MS.gene010290:CDS | 25.0% |
| !!! | TGTTTTGCTGTAAATAGTAA+TGG | - | chr5.4:47649677-47649696 | MS.gene010290:CDS | 25.0% |
| AACATTATACTAAATGCTGC+AGG | - | chr5.4:47649147-47649166 | MS.gene010290:CDS | 30.0% | |
| CATCAAGTCTGTGATTAAAT+TGG | + | chr5.4:47648429-47648448 | None:intergenic | 30.0% | |
| CCCAAATATCAAGAAAGTTA+AGG | + | chr5.4:47648546-47648565 | None:intergenic | 30.0% | |
| CCCTTAACTTTCTTGATATT+TGG | - | chr5.4:47648542-47648561 | MS.gene010290:intron | 30.0% | |
| CCTATAATACTCATTGTTCT+CGG | + | chr5.4:47649506-47649525 | None:intergenic | 30.0% | |
| GAACAATGAGTATTATAGGA+TGG | - | chr5.4:47649507-47649526 | MS.gene010290:CDS | 30.0% | |
| ! | TTTGATAAGGATGTTGATGA+TGG | - | chr5.4:47648850-47648869 | MS.gene010290:intron | 30.0% |
| !! | GCGCAATTCTTTTAATTGTA+AGG | - | chr5.4:47649727-47649746 | MS.gene010290:intron | 30.0% |
| !! | GGTTTTTAGATATGAAAGTC+TGG | - | chr5.4:47648768-47648787 | MS.gene010290:intron | 30.0% |
| !!! | GGTTTTATTCAACCAAAAGT+CGG | - | chr5.4:47648589-47648608 | MS.gene010290:intron | 30.0% |
| ACTATCCGATACTCCTTAAT+AGG | - | chr5.4:47650182-47650201 | MS.gene010290:intron | 35.0% | |
| ACTGTTTGTCGAGGAATTAA+GGG | + | chr5.4:47649225-47649244 | None:intergenic | 35.0% | |
| AGGTGACTTTAATGACATTC+TGG | - | chr5.4:47649916-47649935 | MS.gene010290:CDS | 35.0% | |
| ATAATACTCATTGTTCTCGG+CGG | + | chr5.4:47649503-47649522 | None:intergenic | 35.0% | |
| ATGTCTGTTGCTGAAAAAAG+TGG | - | chr5.4:47649123-47649142 | MS.gene010290:CDS | 35.0% | |
| CAAAGTCTCACTAAGGAAAA+GGG | + | chr5.4:47649606-47649625 | None:intergenic | 35.0% | |
| CCGAGAACAATGAGTATTAT+AGG | - | chr5.4:47649503-47649522 | MS.gene010290:CDS | 35.0% | |
| CTATCCGATACTCCTTAATA+GGG | - | chr5.4:47650183-47650202 | MS.gene010290:intron | 35.0% | |
| CTATGCAAGTGGATGAATTA+GGG | - | chr5.4:47649361-47649380 | MS.gene010290:CDS | 35.0% | |
| GCAAGCTGTTAACAATGAAA+AGG | - | chr5.4:47649272-47649291 | MS.gene010290:CDS | 35.0% | |
| GCTATGCTTGTGGTATATTA+GGG | - | chr5.4:47648800-47648819 | MS.gene010290:intron | 35.0% | |
| GTAAATAGTAATGGTCGAAG+TGG | - | chr5.4:47649686-47649705 | MS.gene010290:CDS | 35.0% | |
| GTCAAGAATAGCAATGTTGT+CGG | + | chr5.4:47648280-47648299 | None:intergenic | 35.0% | |
| TAAAAACCTGTAAGTTGCCA+CGG | + | chr5.4:47649809-47649828 | None:intergenic | 35.0% | |
| TAAAACCAAAAGGCAGATTG+TGG | + | chr5.4:47648576-47648595 | None:intergenic | 35.0% | |
| TAATGTTGTACAAGAGAGTG+TGG | - | chr5.4:47649338-47649357 | MS.gene010290:CDS | 35.0% | |
| TAGGTTCTGTTGATGTTAGT+GGG | - | chr5.4:47649400-47649419 | MS.gene010290:CDS | 35.0% | |
| TCAGATATTTCCAAATGCGA+AGG | - | chr5.4:47650129-47650148 | MS.gene010290:intron | 35.0% | |
| TGCTATGCTTGTGGTATATT+AGG | - | chr5.4:47648799-47648818 | MS.gene010290:intron | 35.0% | |
| TGGATGCTAAAGAAAAACGT+GGG | - | chr5.4:47649936-47649955 | MS.gene010290:CDS | 35.0% | |
| TTAGGTTCTGTTGATGTTAG+TGG | - | chr5.4:47649399-47649418 | MS.gene010290:CDS | 35.0% | |
| ! | AACAATGAAAAGGAAAGTGC+TGG | - | chr5.4:47649282-47649301 | MS.gene010290:CDS | 35.0% |
| ! | AAGTTTTCAACCTTCGCATT+TGG | + | chr5.4:47650142-47650161 | None:intergenic | 35.0% |
| ! | AGTATTTGCTGAAAGTTCAC+AGG | - | chr5.4:47649029-47649048 | MS.gene010290:intron | 35.0% |
| ! | GCTGAAAATGTATTGACCAA+AGG | - | chr5.4:47648448-47648467 | MS.gene010290:intron | 35.0% |
| ! | TGGAAGGATATCCTTTTACA+TGG | - | chr5.4:47650035-47650054 | MS.gene010290:CDS | 35.0% |
| ! | TGGCAACTTACAGGTTTTTA+CGG | - | chr5.4:47649809-47649828 | MS.gene010290:intron | 35.0% |
| !! | AATTCAATGGTAGTTCTAGG+AGG | - | chr5.4:47649054-47649073 | MS.gene010290:intron | 35.0% |
| !!! | AAGCCTCTGTTTTATTTGAG+TGG | + | chr5.4:47649631-47649650 | None:intergenic | 35.0% |
| !!! | GTATTGTTCTTTTCTGGTTG+AGG | + | chr5.4:47649195-47649214 | None:intergenic | 35.0% |
| !!! | TTAATTTTGGAACTACGCTC+AGG | + | chr5.4:47649553-47649572 | None:intergenic | 35.0% |
| AACAAGAATGGCGTATCAGA+AGG | - | chr5.4:47648722-47648741 | MS.gene010290:intron | 40.0% | |
| AAGAATCGGTCATCAAGTGT+CGG | + | chr5.4:47648403-47648422 | None:intergenic | 40.0% | |
| AAGTCACCTAAGATACACCA+AGG | + | chr5.4:47649905-47649924 | None:intergenic | 40.0% | |
| AAGTTCACAGGCGAATTCAA+TGG | - | chr5.4:47649041-47649060 | MS.gene010290:intron | 40.0% | |
| AATAGTAATGGTCGAAGTGG+TGG | - | chr5.4:47649689-47649708 | MS.gene010290:CDS | 40.0% | |
| ACAAGAATGGCGTATCAGAA+GGG | - | chr5.4:47648723-47648742 | MS.gene010290:intron | 40.0% | |
| ACCTAAGATACACCAAGGTA+AGG | + | chr5.4:47649900-47649919 | None:intergenic | 40.0% | |
| AGGTTCTGTTGATGTTAGTG+GGG | - | chr5.4:47649401-47649420 | MS.gene010290:CDS | 40.0% | |
| AGTATAGTAACTCCCTTCAC+CGG | + | chr5.4:47648379-47648398 | None:intergenic | 40.0% | |
| ATTCTTGACCACTGCTTAGT+TGG | - | chr5.4:47648291-47648310 | MS.gene010290:intron | 40.0% | |
| CACTGTTTGTCGAGGAATTA+AGG | + | chr5.4:47649226-47649245 | None:intergenic | 40.0% | |
| CATGCTATTGCTCAACATCT+GGG | - | chr5.4:47648613-47648632 | MS.gene010290:intron | 40.0% | |
| CCAAAGTCTCACTAAGGAAA+AGG | + | chr5.4:47649607-47649626 | None:intergenic | 40.0% | |
| CCAGAAAAGAACAATACTGC+TGG | - | chr5.4:47649198-47649217 | MS.gene010290:CDS | 40.0% | |
| CGTGCTCGATGGTTAATTAA+TGG | - | chr5.4:47649968-47649987 | MS.gene010290:CDS | 40.0% | |
| CTGGATGCTAAAGAAAAACG+TGG | - | chr5.4:47649935-47649954 | MS.gene010290:CDS | 40.0% | |
| GAGACAATATCATGGATACC+AGG | + | chr5.4:47650274-47650293 | None:intergenic | 40.0% | |
| GATGAACATGATGTAACGGT+GGG | - | chr5.4:47649462-47649481 | MS.gene010290:CDS | 40.0% | |
| GATGCTAAAGAAAAACGTGG+GGG | - | chr5.4:47649938-47649957 | MS.gene010290:CDS | 40.0% | |
| GCGAATTCAATGGTAGTTCT+AGG | - | chr5.4:47649051-47649070 | MS.gene010290:intron | 40.0% | |
| GCTATGCAAGTGGATGAATT+AGG | - | chr5.4:47649360-47649379 | MS.gene010290:CDS | 40.0% | |
| GGATGCTAAAGAAAAACGTG+GGG | - | chr5.4:47649937-47649956 | MS.gene010290:CDS | 40.0% | |
| GGTCCACTCAAATAAAACAG+AGG | - | chr5.4:47649625-47649644 | MS.gene010290:CDS | 40.0% | |
| GGTTGAAAACTTAGTAGCTC+CGG | - | chr5.4:47650150-47650169 | MS.gene010290:intron | 40.0% | |
| GTACTGCTGCAAATAATAGG+TGG | - | chr5.4:47648920-47648939 | MS.gene010290:intron | 40.0% | |
| TAATACTCATTGTTCTCGGC+GGG | + | chr5.4:47649502-47649521 | None:intergenic | 40.0% | |
| TATGGCGGTAACAGAAAGAT+TGG | - | chr5.4:47650318-47650337 | MS.gene010290:CDS | 40.0% | |
| TCATGCTATTGCTCAACATC+TGG | - | chr5.4:47648612-47648631 | MS.gene010290:intron | 40.0% | |
| TGATGAACATGATGTAACGG+TGG | - | chr5.4:47649461-47649480 | MS.gene010290:CDS | 40.0% | |
| TGCTGGAATCACGATAAACA+TGG | - | chr5.4:47648245-47648264 | MS.gene010290:intron | 40.0% | |
| TGGATGAATTAGGGACTGTT+GGG | - | chr5.4:47649370-47649389 | MS.gene010290:CDS | 40.0% | |
| ! | ATACGCCATTCTTGTTTCAG+AGG | + | chr5.4:47648718-47648737 | None:intergenic | 40.0% |
| ! | CCAGCAGTATTGTTCTTTTC+TGG | + | chr5.4:47649201-47649220 | None:intergenic | 40.0% |
| ! | CCTTTTCCTTAGTGAGACTT+TGG | - | chr5.4:47649604-47649623 | MS.gene010290:CDS | 40.0% |
| ! | GAGGCTTTTCGTTATATGCT+TGG | - | chr5.4:47649644-47649663 | MS.gene010290:CDS | 40.0% |
| ! | GGCAACTTACAGGTTTTTAC+GGG | - | chr5.4:47649810-47649829 | MS.gene010290:intron | 40.0% |
| ! | GTGATTCGTGGAACTTTTTG+AGG | - | chr5.4:47649855-47649874 | MS.gene010290:CDS | 40.0% |
| ! | TCCTTACCTTGGTGTATCTT+AGG | - | chr5.4:47649896-47649915 | MS.gene010290:CDS | 40.0% |
| ! | TGGGTACTGCTGCAAATAAT+AGG | - | chr5.4:47648917-47648936 | MS.gene010290:intron | 40.0% |
| !! | AATTGTTGGGTTTCTAGTGC+AGG | - | chr5.4:47650295-47650314 | MS.gene010290:CDS | 40.0% |
| !! | CTGAACCTCTGAAACAAGAA+TGG | - | chr5.4:47648710-47648729 | MS.gene010290:intron | 40.0% |
| !! | GTGGTGGTTTAGCTTTATTC+TGG | - | chr5.4:47649705-47649724 | MS.gene010290:CDS | 40.0% |
| ACATCTTTCGCAACCATACC+GGG | + | chr5.4:47648520-47648539 | None:intergenic | 45.0% | |
| AGTGGACCAAAGTCTCACTA+AGG | + | chr5.4:47649613-47649632 | None:intergenic | 45.0% | |
| ATAGCAATGTTGTCGGCGTT+TGG | + | chr5.4:47648273-47648292 | None:intergenic | 45.0% | |
| ATCGGATAGTGATCAGAAGC+CGG | + | chr5.4:47650172-47650191 | None:intergenic | 45.0% | |
| ATTATAGGATGGAACTGCCG+AGG | - | chr5.4:47649518-47649537 | MS.gene010290:CDS | 45.0% | |
| CAGTTCGTTCATGAAGCTGA+AGG | - | chr5.4:47648672-47648691 | MS.gene010290:intron | 45.0% | |
| GAAGTCAATGATCCTAGTCG+AGG | - | chr5.4:47649782-47649801 | MS.gene010290:intron | 45.0% | |
| GACATCTTTCGCAACCATAC+CGG | + | chr5.4:47648521-47648540 | None:intergenic | 45.0% | |
| GGTTCTGTTGATGTTAGTGG+GGG | - | chr5.4:47649402-47649421 | MS.gene010290:CDS | 45.0% | |
| GTGGATGAATTAGGGACTGT+TGG | - | chr5.4:47649369-47649388 | MS.gene010290:CDS | 45.0% | |
| GTTCTGTTGATGTTAGTGGG+GGG | - | chr5.4:47649403-47649422 | MS.gene010290:CDS | 45.0% | |
| GTTTCAGAGGTTCAGACACA+TGG | + | chr5.4:47648705-47648724 | None:intergenic | 45.0% | |
| TAATAGGTGGTTACGCGATC+CGG | - | chr5.4:47648933-47648952 | MS.gene010290:intron | 45.0% | |
| TGACCACTGCTTAGTTGGAA+GGG | - | chr5.4:47648296-47648315 | MS.gene010290:intron | 45.0% | |
| TGCAGGTACATCAACTTTGC+TGG | - | chr5.4:47649164-47649183 | MS.gene010290:CDS | 45.0% | |
| TTCTGTTGATGTTAGTGGGG+GGG | - | chr5.4:47649404-47649423 | MS.gene010290:CDS | 45.0% | |
| TTGACCACTGCTTAGTTGGA+AGG | - | chr5.4:47648295-47648314 | MS.gene010290:intron | 45.0% | |
| ! | ATGTATTGACCAAAGGACCG+TGG | - | chr5.4:47648455-47648474 | MS.gene010290:intron | 45.0% |
| ! | CAAGTCCACAATCTGCCTTT+TGG | - | chr5.4:47648568-47648587 | MS.gene010290:intron | 45.0% |
| ! | CAGACTTGAAGAAGCGTAAG+AGG | - | chr5.4:47649307-47649326 | MS.gene010290:CDS | 45.0% |
| ! | CTTGAAGAAGCGTAAGAGGA+AGG | - | chr5.4:47649311-47649330 | MS.gene010290:CDS | 45.0% |
| ! | GGCTCCCTATTAAGGAGTAT+CGG | + | chr5.4:47650190-47650209 | None:intergenic | 45.0% |
| ! | GGGACTGTTGGGATTGATTT+AGG | - | chr5.4:47649381-47649400 | MS.gene010290:CDS | 45.0% |
| ! | TCTGGTTCGCTATTACAAGC+CGG | - | chr5.4:47649577-47649596 | MS.gene010290:CDS | 45.0% |
| ! | TGTATTGACCAAAGGACCGT+GGG | - | chr5.4:47648456-47648475 | MS.gene010290:intron | 45.0% |
| !! | CAATGGTAGTTCTAGGAGGA+AGG | - | chr5.4:47649058-47649077 | MS.gene010290:intron | 45.0% |
| !! | GCAATAGCATGACCGACTTT+TGG | + | chr5.4:47648604-47648623 | None:intergenic | 45.0% |
| !! | GGTCTGTTTTGCTATGCTTG+TGG | - | chr5.4:47648790-47648809 | MS.gene010290:intron | 45.0% |
| !! | GTCAAGCTGTTTCTGATGCT+GGG | - | chr5.4:47649996-47650015 | MS.gene010290:CDS | 45.0% |
| !! | GTGTCGCTTATTTGCGTGAA+AGG | - | chr5.4:47648335-47648354 | MS.gene010290:intron | 45.0% |
| !! | TTGGGTTTCTAGTGCAGGTA+TGG | - | chr5.4:47650300-47650319 | MS.gene010290:CDS | 45.0% |
| AAGCCTGATCCTCGCAAAGT+GGG | - | chr5.4:47648898-47648917 | MS.gene010290:intron | 50.0% | |
| AATGCGTGGTGTGTTGAACC+TGG | - | chr5.4:47650253-47650272 | MS.gene010290:CDS | 50.0% | |
| AGGAGGTGAGTGGGTAACTA+TGG | - | chr5.4:47648747-47648766 | MS.gene010290:intron | 50.0% | |
| ATCACGCCTTCTACCTCCTT+CGG | + | chr5.4:47649840-47649859 | None:intergenic | 50.0% | |
| CGTGATTCCAGCATCACTGA+GGG | + | chr5.4:47648238-47648257 | None:intergenic | 50.0% | |
| CTTTGCGAGGATCAGGCTTA+AGG | + | chr5.4:47648897-47648916 | None:intergenic | 50.0% | |
| GAACCAACATCAGCCTTCAC+CGG | + | chr5.4:47648955-47648974 | None:intergenic | 50.0% | |
| GAATGGCGTATCAGAAGGGA+AGG | - | chr5.4:47648727-47648746 | MS.gene010290:intron | 50.0% | |
| GATGGAACTGCCGAGGTTTA+GGG | - | chr5.4:47649525-47649544 | MS.gene010290:CDS | 50.0% | |
| GGAGCCTGCTACACGAATTT+GGG | - | chr5.4:47650204-47650223 | MS.gene010290:intron | 50.0% | |
| GGTGTACGATGGCTGTAACA+TGG | - | chr5.4:47648477-47648496 | MS.gene010290:intron | 50.0% | |
| GTACGATGGCTGTAACATGG+TGG | - | chr5.4:47648480-47648499 | MS.gene010290:intron | 50.0% | |
| GTGTAGCAGGCTCCCTATTA+AGG | + | chr5.4:47650198-47650217 | None:intergenic | 50.0% | |
| TAAGCCTGATCCTCGCAAAG+TGG | - | chr5.4:47648897-47648916 | MS.gene010290:intron | 50.0% | |
| TCGTGATTCCAGCATCACTG+AGG | + | chr5.4:47648239-47648258 | None:intergenic | 50.0% | |
| TGGAAGGGTCCTTACTGACA+AGG | - | chr5.4:47648311-47648330 | MS.gene010290:intron | 50.0% | |
| TTAACAGCTTGCGCATCACC+AGG | + | chr5.4:47649264-47649283 | None:intergenic | 50.0% | |
| TTACAGCCATCGTACACCCA+CGG | + | chr5.4:47648475-47648494 | None:intergenic | 50.0% | |
| TTCCAGCATCACTGAGGGTA+AGG | + | chr5.4:47648233-47648252 | None:intergenic | 50.0% | |
| TTTAGGTACCCCTAGAGCTG+TGG | - | chr5.4:47650066-47650085 | MS.gene010290:CDS | 50.0% | |
| ! | AGAGAGTGTGGCTATGCAAG+TGG | - | chr5.4:47649350-47649369 | MS.gene010290:CDS | 50.0% |
| ! | GGTTTTTACGGGTTTCCCGA+AGG | - | chr5.4:47649821-47649840 | MS.gene010290:CDS | 50.0% |
| ! | TTTTACGGGTTTCCCGAAGG+AGG | - | chr5.4:47649824-47649843 | MS.gene010290:CDS | 50.0% |
| !! | CGTCAAGCTGTTTCTGATGC+TGG | - | chr5.4:47649995-47650014 | MS.gene010290:CDS | 50.0% |
| !! | GATGTTGATGATGGAGTGCG+AGG | - | chr5.4:47648859-47648878 | MS.gene010290:intron | 50.0% |
| !! | GCTGTAACATGGTGGTGGAA+CGG | - | chr5.4:47648488-47648507 | MS.gene010290:intron | 50.0% |
| !! | GGTTTCTAGTGCAGGTATGG+CGG | - | chr5.4:47650303-47650322 | MS.gene010290:CDS | 50.0% |
| !! | TCACTAAGGAAAAGGGCGTC+CGG | + | chr5.4:47649599-47649618 | None:intergenic | 50.0% |
| !! | TGATGATGGAGTGCGAGGTT+GGG | - | chr5.4:47648864-47648883 | MS.gene010290:intron | 50.0% |
| !! | TTGATGATGGAGTGCGAGGT+TGG | - | chr5.4:47648863-47648882 | MS.gene010290:intron | 50.0% |
| AAAGGACCGTGGGTGTACGA+TGG | - | chr5.4:47648466-47648485 | MS.gene010290:intron | 55.0% | |
| AACGGTGGGTCCTGTTAGTC+AGG | - | chr5.4:47649476-47649495 | MS.gene010290:CDS | 55.0% | |
| AAGATGCATTCGCGAGCGCA+CGG | + | chr5.4:47650105-47650124 | None:intergenic | 55.0% | |
| AGCGACACGCCTTGTCAGTA+AGG | + | chr5.4:47648323-47648342 | None:intergenic | 55.0% | |
| ATCGTACACCCACGGTCCTT+TGG | + | chr5.4:47648467-47648486 | None:intergenic | 55.0% | |
| ATGATCCTAGTCGAGGACCG+TGG | - | chr5.4:47649789-47649808 | MS.gene010290:intron | 55.0% | |
| CAGAAGGGAAGGAGGTGAGT+GGG | - | chr5.4:47648738-47648757 | MS.gene010290:intron | 55.0% | |
| CGATGGCTGTAACATGGTGG+TGG | - | chr5.4:47648483-47648502 | MS.gene010290:intron | 55.0% | |
| CGCATCACCAGGAGCTTCAA+GGG | + | chr5.4:47649253-47649272 | None:intergenic | 55.0% | |
| GATCCGGTGAAGGCTGATGT+TGG | - | chr5.4:47648949-47648968 | MS.gene010290:intron | 55.0% | |
| GGACCCTTCCAACTAAGCAG+TGG | + | chr5.4:47648302-47648321 | None:intergenic | 55.0% | |
| GGATGGAACTGCCGAGGTTT+AGG | - | chr5.4:47649524-47649543 | MS.gene010290:CDS | 55.0% | |
| GGCACCCAAATTCGTGTAGC+AGG | + | chr5.4:47650211-47650230 | None:intergenic | 55.0% | |
| GGGAGCCTGCTACACGAATT+TGG | - | chr5.4:47650203-47650222 | MS.gene010290:intron | 55.0% | |
| GGTTTCCCGAAGGAGGTAGA+AGG | - | chr5.4:47649831-47649850 | MS.gene010290:CDS | 55.0% | |
| GTACCCACTTTGCGAGGATC+AGG | + | chr5.4:47648904-47648923 | None:intergenic | 55.0% | |
| GTGAAAGGCTGAGCCGAGTT+TGG | - | chr5.4:47648350-47648369 | MS.gene010290:intron | 55.0% | |
| TCACGCCTTCTACCTCCTTC+GGG | + | chr5.4:47649839-47649858 | None:intergenic | 55.0% | |
| TCAGAAGGGAAGGAGGTGAG+TGG | - | chr5.4:47648737-47648756 | MS.gene010290:intron | 55.0% | |
| TGGCGTATCAGAAGGGAAGG+AGG | - | chr5.4:47648730-47648749 | MS.gene010290:intron | 55.0% | |
| ! | AGGGCAAGCACTGTTTGTCG+AGG | + | chr5.4:47649234-47649253 | None:intergenic | 55.0% |
| ! | GAGGTAGAAGGCGTGATTCG+TGG | - | chr5.4:47649843-47649862 | MS.gene010290:CDS | 55.0% |
| ! | GGAACGGATTCTACCCGGTA+TGG | - | chr5.4:47648504-47648523 | MS.gene010290:intron | 55.0% |
| ! | GTGGTGGAACGGATTCTACC+CGG | - | chr5.4:47648499-47648518 | MS.gene010290:intron | 55.0% |
| !! | GATGATGGAGTGCGAGGTTG+GGG | - | chr5.4:47648865-47648884 | MS.gene010290:intron | 55.0% |
| AACCGCTCCTCCACAGCTCT+AGG | + | chr5.4:47650079-47650098 | None:intergenic | 60.0% | |
| ACCGCTCCTCCACAGCTCTA+GGG | + | chr5.4:47650078-47650097 | None:intergenic | 60.0% | |
| AGGTACCCCTAGAGCTGTGG+AGG | - | chr5.4:47650069-47650088 | MS.gene010290:CDS | 60.0% | |
| AGTTGCCACGGTCCTCGACT+AGG | + | chr5.4:47649797-47649816 | None:intergenic | 60.0% | |
| CCTTCACCGGACGCCAAACT+CGG | + | chr5.4:47648366-47648385 | None:intergenic | 60.0% | |
| CGAGGACCGTGGCAACTTAC+AGG | - | chr5.4:47649800-47649819 | MS.gene010290:intron | 60.0% | |
| CGAGTTTGGCGTCCGGTGAA+GGG | - | chr5.4:47648364-47648383 | MS.gene010290:intron | 60.0% | |
| CGCTCAGGTGCCCTAAACCT+CGG | + | chr5.4:47649538-47649557 | None:intergenic | 60.0% | |
| GCAGCAGTACCCACTTTGCG+AGG | + | chr5.4:47648910-47648929 | None:intergenic | 60.0% | |
| GCGCATCACCAGGAGCTTCA+AGG | + | chr5.4:47649254-47649273 | None:intergenic | 60.0% | |
| GGCCTTACCCTCAGTGATGC+TGG | - | chr5.4:47648228-47648247 | MS.gene010290:CDS | 60.0% | |
| GGGGTTCTGTTCGTGCTCGA+TGG | - | chr5.4:47649957-47649976 | MS.gene010290:CDS | 60.0% | |
| GTGCGCTCGCGAATGCATCT+TGG | - | chr5.4:47650104-47650123 | MS.gene010290:CDS | 60.0% | |
| GTGCTTGCCCTTGAAGCTCC+TGG | - | chr5.4:47649243-47649262 | MS.gene010290:CDS | 60.0% | |
| GTGGTTACGCGATCCGGTGA+AGG | - | chr5.4:47648939-47648958 | MS.gene010290:intron | 60.0% | |
| CCCCTAGAGCTGTGGAGGAG+CGG | - | chr5.4:47650074-47650093 | MS.gene010290:CDS | 65.0% | |
| CCGAGTTTGGCGTCCGGTGA+AGG | - | chr5.4:47648363-47648382 | MS.gene010290:intron | 65.0% | |
| GCTGAGCCGAGTTTGGCGTC+CGG | - | chr5.4:47648357-47648376 | MS.gene010290:intron | 65.0% | |
| TCTCGGCGGGCCTGACTAAC+AGG | + | chr5.4:47649489-47649508 | None:intergenic | 65.0% | |
| ! | CCGCTCCTCCACAGCTCTAG+GGG | + | chr5.4:47650077-47650096 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 47648210 | 47650356 | 47648210 | ID=MS.gene010290 |
| chr5.4 | mRNA | 47648210 | 47650356 | 47648210 | ID=MS.gene010290.t1;Parent=MS.gene010290 |
| chr5.4 | exon | 47650217 | 47650356 | 47650217 | ID=MS.gene010290.t1.exon1;Parent=MS.gene010290.t1 |
| chr5.4 | CDS | 47650217 | 47650356 | 47650217 | ID=cds.MS.gene010290.t1;Parent=MS.gene010290.t1 |
| chr5.4 | exon | 47649815 | 47650125 | 47649815 | ID=MS.gene010290.t1.exon2;Parent=MS.gene010290.t1 |
| chr5.4 | CDS | 47649815 | 47650125 | 47649815 | ID=cds.MS.gene010290.t1;Parent=MS.gene010290.t1 |
| chr5.4 | exon | 47649121 | 47649745 | 47649121 | ID=MS.gene010290.t1.exon3;Parent=MS.gene010290.t1 |
| chr5.4 | CDS | 47649121 | 47649745 | 47649121 | ID=cds.MS.gene010290.t1;Parent=MS.gene010290.t1 |
| chr5.4 | exon | 47648210 | 47648249 | 47648210 | ID=MS.gene010290.t1.exon4;Parent=MS.gene010290.t1 |
| chr5.4 | CDS | 47648210 | 47648249 | 47648210 | ID=cds.MS.gene010290.t1;Parent=MS.gene010290.t1 |
| Gene Sequence |
| Protein sequence |
