Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09023.t1 | XP_024630779.1 | 55.6 | 387 | 160 | 5 | 1 | 378 | 1 | 384 | 3.00E-110 | 408.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09023.t1 | A0A396JIW9 | 54.0 | 376 | 160 | 4 | 1 | 372 | 1 | 367 | 2.6e-103 | 385.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09023.t1 | MTR_0010s0370 | 76.111 | 180 | 43 | 0 | 1 | 180 | 1 | 180 | 1.02e-99 | 294 |
| MS.gene09023.t1 | MTR_0010s0350 | 76.111 | 180 | 43 | 0 | 1 | 180 | 1 | 180 | 1.02e-99 | 294 |
| MS.gene09023.t1 | MTR_1g036720 | 74.775 | 111 | 28 | 0 | 1 | 111 | 1 | 111 | 6.95e-58 | 184 |
| MS.gene09023.t1 | MTR_1g036710 | 51.759 | 199 | 53 | 5 | 132 | 326 | 1 | 160 | 1.62e-52 | 177 |
| MS.gene09023.t1 | MTR_6g033215 | 30.286 | 175 | 122 | 0 | 25 | 199 | 120 | 294 | 2.76e-27 | 110 |
| MS.gene09023.t1 | MTR_7g089990 | 47.273 | 110 | 56 | 1 | 102 | 209 | 84 | 193 | 4.48e-24 | 99.4 |
| MS.gene09023.t1 | MTR_3g053920 | 30.645 | 186 | 108 | 4 | 4 | 187 | 8 | 174 | 2.96e-19 | 87.4 |
| MS.gene09023.t1 | MTR_2g061500 | 36.000 | 125 | 78 | 1 | 3 | 127 | 7 | 129 | 2.08e-17 | 78.6 |
| MS.gene09023.t1 | MTR_4g103530 | 38.202 | 89 | 55 | 0 | 57 | 145 | 5 | 93 | 1.27e-16 | 77.8 |
| MS.gene09023.t1 | MTR_1g051330 | 37.063 | 143 | 75 | 3 | 225 | 363 | 8 | 139 | 5.59e-15 | 77.0 |
| MS.gene09023.t1 | MTR_3g024240 | 36.364 | 121 | 75 | 1 | 82 | 200 | 55 | 175 | 8.95e-15 | 72.4 |
| MS.gene09023.t1 | MTR_7g106180 | 28.966 | 145 | 96 | 2 | 34 | 175 | 26 | 166 | 1.93e-13 | 69.7 |
| MS.gene09023.t1 | MTR_8g468010 | 36.364 | 66 | 42 | 0 | 115 | 180 | 1 | 66 | 2.72e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09023.t1 | AT5G18636 | 26.047 | 215 | 151 | 2 | 4 | 215 | 9 | 218 | 7.39e-21 | 93.2 |
| MS.gene09023.t1 | AT2G41590 | 26.977 | 215 | 149 | 2 | 4 | 215 | 9 | 218 | 8.53e-21 | 93.2 |
| MS.gene09023.t1 | AT5G25200 | 26.047 | 215 | 151 | 2 | 4 | 215 | 9 | 218 | 8.95e-21 | 93.2 |
| MS.gene09023.t1 | AT3G57587 | 27.717 | 184 | 131 | 1 | 32 | 215 | 37 | 218 | 1.84e-20 | 92.0 |
| MS.gene09023.t1 | AT2G02103 | 25.581 | 215 | 152 | 2 | 4 | 215 | 9 | 218 | 3.08e-20 | 92.0 |
| MS.gene09023.t1 | AT2G13450 | 26.415 | 212 | 154 | 2 | 4 | 215 | 9 | 218 | 7.91e-20 | 90.5 |
| MS.gene09023.t1 | AT2G17920 | 27.717 | 184 | 131 | 1 | 32 | 215 | 37 | 218 | 1.03e-19 | 89.0 |
| MS.gene09023.t1 | AT3G31430 | 23.005 | 213 | 160 | 1 | 3 | 215 | 103 | 311 | 2.43e-18 | 85.5 |
| MS.gene09023.t1 | AT5G36228 | 23.474 | 213 | 161 | 1 | 3 | 215 | 8 | 218 | 3.26e-18 | 85.5 |
| MS.gene09023.t1 | AT3G47920 | 29.054 | 148 | 103 | 1 | 68 | 215 | 2 | 147 | 3.35e-18 | 84.7 |
| MS.gene09023.t1 | AT4G02000 | 26.667 | 135 | 97 | 1 | 81 | 215 | 6 | 138 | 1.27e-15 | 77.4 |
| MS.gene09023.t1 | AT5G36225 | 31.111 | 90 | 62 | 0 | 121 | 210 | 17 | 106 | 1.65e-13 | 70.1 |
| MS.gene09023.t1 | AT2G13500 | 28.169 | 142 | 96 | 3 | 86 | 224 | 91 | 229 | 1.97e-12 | 68.2 |
Find 93 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACAAAGAATTCTTAAAA+AGG | 0.220249 | 4.4:-15341261 | MS.gene09023:CDS |
| CAGATGACGGTACAAGATTA+TGG | 0.256998 | 4.4:-15340839 | MS.gene09023:CDS |
| GATCCAAACCTTAGAATTAT+AGG | 0.260273 | 4.4:-15341422 | MS.gene09023:CDS |
| GACAATCACCTCCTGGTTCT+AGG | 0.300480 | 4.4:-15341224 | MS.gene09023:CDS |
| GACTGGAGGGTGACCTGGTT+TGG | 0.321754 | 4.4:+15341179 | None:intergenic |
| AATCTAGATGATGGAAGAAT+TGG | 0.327088 | 4.4:+15341282 | None:intergenic |
| TCCGTTCCTATATGAGAATC+AGG | 0.331248 | 4.4:-15341031 | MS.gene09023:CDS |
| GATGTCTTTCCCTACTTTCT+CGG | 0.334257 | 4.4:+15341109 | None:intergenic |
| CGGCCTATAATTCTAAGGTT+TGG | 0.353438 | 4.4:+15341419 | None:intergenic |
| TTGACATGGTTTGTGCTTGC+AGG | 0.372234 | 4.4:+15340435 | None:intergenic |
| GGTTGTGAGGGTAGGATATC+AGG | 0.384093 | 4.4:+15341449 | None:intergenic |
| TCATGAACTTGGATCCAAAA+AGG | 0.402090 | 4.4:+15341152 | None:intergenic |
| ATGACGCTTGTTTCTCCACT+TGG | 0.409519 | 4.4:+15340957 | None:intergenic |
| TGGAGATGACTGAAACATTC+TGG | 0.410987 | 4.4:-15341358 | MS.gene09023:CDS |
| GGAAACGGCCTATAATTCTA+AGG | 0.416757 | 4.4:+15341414 | None:intergenic |
| AATTCAAATATGAGCGTCTT+GGG | 0.422212 | 4.4:-15340932 | MS.gene09023:CDS |
| TTCTCGGACATGTAGCCTAT+AGG | 0.423116 | 4.4:+15341125 | None:intergenic |
| ACTGGAGGGTGACCTGGTTT+GGG | 0.423705 | 4.4:+15341180 | None:intergenic |
| ATTCTAAGGTTTGGATCTGC+TGG | 0.425958 | 4.4:+15341428 | None:intergenic |
| CAGAATCTGTAACTGCTGAT+TGG | 0.427187 | 4.4:+15340691 | None:intergenic |
| CAGAACCCTGATTCTCATAT+AGG | 0.428341 | 4.4:+15341025 | None:intergenic |
| AGATGACGGTACAAGATTAT+GGG | 0.428671 | 4.4:-15340838 | MS.gene09023:CDS |
| AAGATAGAGGAAATTGAATC+AGG | 0.429956 | 4.4:-15341317 | MS.gene09023:CDS |
| CTGCGGAATGGCTGCCTCCA+AGG | 0.433326 | 4.4:+15339620 | None:intergenic |
| TGCAGCTCAATCCACTCCCT+TGG | 0.439260 | 4.4:-15339637 | MS.gene09023:intron |
| TGGGATGTTACAGTGCTGTT+TGG | 0.445752 | 4.4:+15340711 | None:intergenic |
| GGAAGAATTGGAATGAGAAT+AGG | 0.451775 | 4.4:+15341294 | None:intergenic |
| TTCTTTGTAAATCTAGATGA+TGG | 0.453210 | 4.4:+15341273 | None:intergenic |
| TCTCGGACATGTAGCCTATA+GGG | 0.461228 | 4.4:+15341126 | None:intergenic |
| CAAGTTCATGACCTCCCTAT+AGG | 0.461621 | 4.4:-15341140 | MS.gene09023:CDS |
| AAAGACATCGCAAACTTCAT+TGG | 0.480185 | 4.4:-15341095 | MS.gene09023:CDS |
| ATGCGGATTACGTAACAGAT+TGG | 0.482427 | 4.4:+15340659 | None:intergenic |
| AAATTCAAATATGAGCGTCT+TGG | 0.482857 | 4.4:-15340933 | MS.gene09023:CDS |
| TATCAGAGAGCAAGGTTCAA+TGG | 0.489801 | 4.4:-15340771 | MS.gene09023:CDS |
| CTATAGGGAGGTCATGAACT+TGG | 0.490036 | 4.4:+15341141 | None:intergenic |
| TCCGCCAACTCTTGCTGACA+TGG | 0.494369 | 4.4:-15340478 | MS.gene09023:CDS |
| GAATAATGAGGAACAAATGT+TGG | 0.499590 | 4.4:-15340592 | MS.gene09023:CDS |
| AATGGCTGCCTCCAAGGGAG+TGG | 0.501068 | 4.4:+15339626 | None:intergenic |
| GTACTTTGACAATCACCTCC+TGG | 0.501918 | 4.4:-15341231 | MS.gene09023:CDS |
| AGAATCTGTAACTGCTGATT+GGG | 0.511573 | 4.4:+15340692 | None:intergenic |
| TCTATCTTGACAGAGCGGAC+AGG | 0.512601 | 4.4:+15341332 | None:intergenic |
| CATTCGTACTCATATGATGA+TGG | 0.513196 | 4.4:-15341378 | MS.gene09023:CDS |
| CTATCTTGACAGAGCGGACA+GGG | 0.516105 | 4.4:+15341333 | None:intergenic |
| TCCATGTCAGCAAGAGTTGG+CGG | 0.516583 | 4.4:+15340477 | None:intergenic |
| CATCATCATATGAGTACGAA+TGG | 0.516941 | 4.4:+15341379 | None:intergenic |
| TGTCCGCTCTGTCAAGATAG+AGG | 0.519447 | 4.4:-15341330 | MS.gene09023:CDS |
| TACAGTGCTGTTTGGTTGAA+CGG | 0.524794 | 4.4:+15340719 | None:intergenic |
| AAACAGCGGTCCAACGGCGG+TGG | 0.525013 | 4.4:-15340795 | MS.gene09023:CDS |
| AGCTCAATCCACTCCCTTGG+AGG | 0.533071 | 4.4:-15339634 | MS.gene09023:CDS |
| CTGGAAGAACTCCTAGAACC+AGG | 0.533838 | 4.4:+15341213 | None:intergenic |
| GCTACATGTCCGAGAAAGTA+GGG | 0.535395 | 4.4:-15341118 | MS.gene09023:CDS |
| TGCGGAATGGCTGCCTCCAA+GGG | 0.536150 | 4.4:+15339621 | None:intergenic |
| TTAAATTTAAAACTGCGGAA+TGG | 0.549165 | 4.4:+15339608 | None:intergenic |
| ATCATCATATGAGTACGAAT+GGG | 0.555618 | 4.4:+15341380 | None:intergenic |
| AGAAAATAATGTCCCAAACC+AGG | 0.559709 | 4.4:-15341192 | MS.gene09023:CDS |
| TTTGGATCTGCTGGTTGTGA+GGG | 0.560519 | 4.4:+15341437 | None:intergenic |
| TGGGACGATTTGTGAGGAAA+CGG | 0.562649 | 4.4:+15341399 | None:intergenic |
| GAACAGACTGGAGGGTGACC+TGG | 0.563180 | 4.4:+15341174 | None:intergenic |
| TAATGAGGAACAAATGTTGG+AGG | 0.564135 | 4.4:-15340589 | MS.gene09023:CDS |
| GTTTGGATCTGCTGGTTGTG+AGG | 0.564794 | 4.4:+15341436 | None:intergenic |
| TGTTGCTGTCAGCGTTGACA+TGG | 0.565482 | 4.4:+15340421 | None:intergenic |
| CATTGTTAAATTTAAAACTG+CGG | 0.568249 | 4.4:+15339603 | None:intergenic |
| GTTGAGAAACAGCGGTCCAA+CGG | 0.571798 | 4.4:-15340801 | MS.gene09023:CDS |
| GGCTACATGTCCGAGAAAGT+AGG | 0.573339 | 4.4:-15341119 | MS.gene09023:CDS |
| GATCTGCTGGTTGTGAGGGT+AGG | 0.575418 | 4.4:+15341441 | None:intergenic |
| GTGAGGGTAGGATATCAGGT+TGG | 0.586519 | 4.4:+15341453 | None:intergenic |
| AGAACAAAATCAGAATAATG+AGG | 0.588534 | 4.4:-15340604 | MS.gene09023:CDS |
| ATTACGTAACAGATTGGCTA+AGG | 0.591591 | 4.4:+15340665 | None:intergenic |
| GATGACGGTACAAGATTATG+GGG | 0.592257 | 4.4:-15340837 | MS.gene09023:CDS |
| ACATGGTTTGTGCTTGCAGG+TGG | 0.593824 | 4.4:+15340438 | None:intergenic |
| TAGTGAAAGTTGATTGAGAG+AGG | 0.594611 | 4.4:+15341502 | None:intergenic |
| CCCTGATTCTCATATAGGAA+CGG | 0.595550 | 4.4:+15341030 | None:intergenic |
| TACTCAGTGGATTCAGATGA+CGG | 0.617382 | 4.4:-15340852 | MS.gene09023:CDS |
| CCGTTCCTATATGAGAATCA+GGG | 0.619733 | 4.4:-15341030 | MS.gene09023:CDS |
| ACTTTCACTAAGTGATGAGG+AGG | 0.623249 | 4.4:-15341489 | MS.gene09023:CDS |
| TTTGAAGGGCGCATTAAATG+CGG | 0.624760 | 4.4:+15340642 | None:intergenic |
| GTTCAATGGCAGCTCAGCGG+TGG | 0.630986 | 4.4:-15340757 | MS.gene09023:CDS |
| GCGGTGGATATCAGAGAGCA+AGG | 0.634233 | 4.4:-15340779 | MS.gene09023:CDS |
| AATGTTGGAGGAGAATAATG+AGG | 0.638869 | 4.4:-15340577 | MS.gene09023:CDS |
| TCTCTGATATCCACCGCCGT+TGG | 0.641779 | 4.4:+15340785 | None:intergenic |
| TCAACTTTCACTAAGTGATG+AGG | 0.647814 | 4.4:-15341492 | MS.gene09023:CDS |
| CTGTGATAAGTTGTACTCAG+TGG | 0.652498 | 4.4:-15340865 | MS.gene09023:CDS |
| TATCACAGTAGTCTTCTATG+TGG | 0.659883 | 4.4:+15340880 | None:intergenic |
| TTTGGTTGAACGGTAACTGA+TGG | 0.660918 | 4.4:+15340729 | None:intergenic |
| TACGAATGGGACGATTTGTG+AGG | 0.662775 | 4.4:+15341393 | None:intergenic |
| GAGAAACAGCGGTCCAACGG+CGG | 0.666896 | 4.4:-15340798 | MS.gene09023:CDS |
| CGGACATGTAGCCTATAGGG+AGG | 0.703963 | 4.4:+15341129 | None:intergenic |
| AGGTGATTGTCAAAGTACCA+AGG | 0.706551 | 4.4:+15341236 | None:intergenic |
| AAGGTTCAATGGCAGCTCAG+CGG | 0.709603 | 4.4:-15340760 | MS.gene09023:CDS |
| TTTCCTCTATCTTGACAGAG+CGG | 0.724017 | 4.4:+15341327 | None:intergenic |
| AATTGCGTGTTGAGAAACAG+CGG | 0.731707 | 4.4:-15340809 | MS.gene09023:CDS |
| ATGACGGTACAAGATTATGG+GGG | 0.743730 | 4.4:-15340836 | MS.gene09023:CDS |
| GAAGAACTCCTAGAACCAGG+AGG | 0.750816 | 4.4:+15341216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACAAAGAATTCTTAAAAA+GGG | - | chr4.4:15339860-15339879 | MS.gene09023:intron | 15.0% |
| !! | TTTACAAAGAATTCTTAAAA+AGG | - | chr4.4:15339859-15339878 | MS.gene09023:intron | 15.0% |
| !! | AAGAAATGAATATCATATCT+TGG | - | chr4.4:15340793-15340812 | MS.gene09023:CDS | 20.0% |
| !! | TCAATTAAGATTACAATATC+CGG | + | chr4.4:15340885-15340904 | None:intergenic | 20.0% |
| !! | TTAATTGAAACTTTAGTTGA+TGG | - | chr4.4:15340897-15340916 | MS.gene09023:CDS | 20.0% |
| ! | AGAACAAAATCAGAATAATG+AGG | - | chr4.4:15340516-15340535 | MS.gene09023:CDS | 25.0% |
| ! | GATATGATATTCATTTCTTC+CGG | + | chr4.4:15340792-15340811 | None:intergenic | 25.0% |
| ! | TCTGAATTATGTTACAAGAT+TGG | - | chr4.4:15340930-15340949 | MS.gene09023:CDS | 25.0% |
| ! | TTCTTTGTAAATCTAGATGA+TGG | + | chr4.4:15339850-15339869 | None:intergenic | 25.0% |
| !!! | GTCATCTGAGAATTTTTTAT+CGG | - | chr4.4:15340744-15340763 | MS.gene09023:CDS | 25.0% |
| !!! | TTTCATTAACTTGCATATTC+AGG | - | chr4.4:15341055-15341074 | MS.gene09023:CDS | 25.0% |
| AAAAAGATAAAGAGACCAAG+TGG | - | chr4.4:15340148-15340167 | MS.gene09023:intron | 30.0% | |
| AAATTCAAATATGAGCGTCT+TGG | - | chr4.4:15340187-15340206 | MS.gene09023:intron | 30.0% | |
| AAGATAGAGGAAATTGAATC+AGG | - | chr4.4:15339803-15339822 | MS.gene09023:intron | 30.0% | |
| AATTCAAATATGAGCGTCTT+GGG | - | chr4.4:15340188-15340207 | MS.gene09023:intron | 30.0% | |
| ATCATCATATGAGTACGAAT+GGG | + | chr4.4:15339743-15339762 | None:intergenic | 30.0% | |
| CATATTCAGGATCCTATAAA+CGG | - | chr4.4:15341068-15341087 | MS.gene09023:CDS | 30.0% | |
| GAATAATGAGGAACAAATGT+TGG | - | chr4.4:15340528-15340547 | MS.gene09023:CDS | 30.0% | |
| GATCCAAACCTTAGAATTAT+AGG | - | chr4.4:15339698-15339717 | MS.gene09023:intron | 30.0% | |
| TGATTGCTACAAAAACAAAG+CGG | - | chr4.4:15340569-15340588 | MS.gene09023:CDS | 30.0% | |
| ! | ATTTTGTTCTGCAGAGTTTA+AGG | + | chr4.4:15340506-15340525 | None:intergenic | 30.0% |
| ! | CAGAGTTTAAGGATTTTGAA+GGG | + | chr4.4:15340495-15340514 | None:intergenic | 30.0% |
| ! | TGCTTTTGAACCAAGTAAAT+TGG | + | chr4.4:15341334-15341353 | None:intergenic | 30.0% |
| ! | TTTACTTGGTTCAAAAGCAT+CGG | - | chr4.4:15341335-15341354 | MS.gene09023:CDS | 30.0% |
| !! | AATCTAGATGATGGAAGAAT+TGG | + | chr4.4:15339841-15339860 | None:intergenic | 30.0% |
| !!! | CTTTGTTTTTGTAGCAATCA+TGG | + | chr4.4:15340569-15340588 | None:intergenic | 30.0% |
| AAAGACATCGCAAACTTCAT+TGG | - | chr4.4:15340025-15340044 | MS.gene09023:intron | 35.0% | |
| AATGTTGGAGGAGAATAATG+AGG | - | chr4.4:15340543-15340562 | MS.gene09023:CDS | 35.0% | |
| AGAAAATAATGTCCCAAACC+AGG | - | chr4.4:15339928-15339947 | MS.gene09023:intron | 35.0% | |
| AGTGGAGTATGATCAGATAT+TGG | + | chr4.4:15341458-15341477 | None:intergenic | 35.0% | |
| ATACCAAAGCTCTATCTAGT+CGG | + | chr4.4:15341382-15341401 | None:intergenic | 35.0% | |
| CATCATCATATGAGTACGAA+TGG | + | chr4.4:15339744-15339763 | None:intergenic | 35.0% | |
| CATTCGTACTCATATGATGA+TGG | - | chr4.4:15339742-15339761 | MS.gene09023:intron | 35.0% | |
| CATTTGATTGACTGCTTAGA+AGG | + | chr4.4:15341166-15341185 | None:intergenic | 35.0% | |
| GAATTCTTAAAAAGGGTCCT+TGG | - | chr4.4:15339867-15339886 | MS.gene09023:intron | 35.0% | |
| GGAAGAATTGGAATGAGAAT+AGG | + | chr4.4:15339829-15339848 | None:intergenic | 35.0% | |
| TAATGAGGAACAAATGTTGG+AGG | - | chr4.4:15340531-15340550 | MS.gene09023:CDS | 35.0% | |
| TACAAAAACAAAGCGGTCAA+GGG | - | chr4.4:15340576-15340595 | MS.gene09023:CDS | 35.0% | |
| TATCACAGTAGTCTTCTATG+TGG | + | chr4.4:15340243-15340262 | None:intergenic | 35.0% | |
| TCAACTTTCACTAAGTGATG+AGG | - | chr4.4:15339628-15339647 | MS.gene09023:CDS | 35.0% | |
| TCATGAACTTGGATCCAAAA+AGG | + | chr4.4:15339971-15339990 | None:intergenic | 35.0% | |
| ! | AGAATCTGTAACTGCTGATT+GGG | + | chr4.4:15340431-15340450 | None:intergenic | 35.0% |
| ! | AGATGACGGTACAAGATTAT+GGG | - | chr4.4:15340282-15340301 | MS.gene09023:intron | 35.0% |
| ! | ATTACGTAACAGATTGGCTA+AGG | + | chr4.4:15340458-15340477 | None:intergenic | 35.0% |
| ! | GCAGAGTTTAAGGATTTTGA+AGG | + | chr4.4:15340496-15340515 | None:intergenic | 35.0% |
| ! | TAGTGAAAGTTGATTGAGAG+AGG | + | chr4.4:15339621-15339640 | None:intergenic | 35.0% |
| !! | ATCTTTTTCATGCGCTTTAG+AGG | + | chr4.4:15340136-15340155 | None:intergenic | 35.0% |
| !! | TGGTTTGGGACATTATTTTC+TGG | + | chr4.4:15339929-15339948 | None:intergenic | 35.0% |
| !!! | GGGAACTTTTGCTATTTTTG+TGG | - | chr4.4:15340208-15340227 | MS.gene09023:intron | 35.0% |
| !!! | TGCTATTTTTGTGGTATGCT+GGG | - | chr4.4:15340217-15340236 | MS.gene09023:intron | 35.0% |
| !!! | TTGCTATTTTTGTGGTATGC+TGG | - | chr4.4:15340216-15340235 | MS.gene09023:intron | 35.0% |
| AATGATCCATGGTGCATCAT+CGG | - | chr4.4:15341182-15341201 | MS.gene09023:CDS | 40.0% | |
| AATTGCGTGTTGAGAAACAG+CGG | - | chr4.4:15340311-15340330 | MS.gene09023:intron | 40.0% | |
| ACAAAAACAAAGCGGTCAAG+GGG | - | chr4.4:15340577-15340596 | MS.gene09023:CDS | 40.0% | |
| ACTTTCACTAAGTGATGAGG+AGG | - | chr4.4:15339631-15339650 | MS.gene09023:CDS | 40.0% | |
| AGATGACTTAGAGATGTCCA+TGG | + | chr4.4:15340731-15340750 | None:intergenic | 40.0% | |
| ATGACGGTACAAGATTATGG+GGG | - | chr4.4:15340284-15340303 | MS.gene09023:intron | 40.0% | |
| CAATATCCGGTTTATAGACG+CGG | + | chr4.4:15340872-15340891 | None:intergenic | 40.0% | |
| CAGAACCCTGATTCTCATAT+AGG | + | chr4.4:15340098-15340117 | None:intergenic | 40.0% | |
| CAGAATCTGTAACTGCTGAT+TGG | + | chr4.4:15340432-15340451 | None:intergenic | 40.0% | |
| CATTCGAGGTTTCCAAAATG+CGG | - | chr4.4:15341268-15341287 | MS.gene09023:CDS | 40.0% | |
| CCCTGATTCTCATATAGGAA+CGG | + | chr4.4:15340093-15340112 | None:intergenic | 40.0% | |
| CCGTTCCTATATGAGAATCA+GGG | - | chr4.4:15340090-15340109 | MS.gene09023:intron | 40.0% | |
| CTACAAAAACAAAGCGGTCA+AGG | - | chr4.4:15340575-15340594 | MS.gene09023:CDS | 40.0% | |
| CTGTGATAAGTTGTACTCAG+TGG | - | chr4.4:15340255-15340274 | MS.gene09023:intron | 40.0% | |
| GATGACTTAGAGATGTCCAT+GGG | + | chr4.4:15340730-15340749 | None:intergenic | 40.0% | |
| GATGTCTTTCCCTACTTTCT+CGG | + | chr4.4:15340014-15340033 | None:intergenic | 40.0% | |
| GCAGTCAATCAAATGATCCA+TGG | - | chr4.4:15341171-15341190 | MS.gene09023:CDS | 40.0% | |
| GGAAACGGCCTATAATTCTA+AGG | + | chr4.4:15339709-15339728 | None:intergenic | 40.0% | |
| TACCAAAGCTCTATCTAGTC+GGG | + | chr4.4:15341381-15341400 | None:intergenic | 40.0% | |
| TATCAGAGAGCAAGGTTCAA+TGG | - | chr4.4:15340349-15340368 | MS.gene09023:intron | 40.0% | |
| TCCGTTCCTATATGAGAATC+AGG | - | chr4.4:15340089-15340108 | MS.gene09023:intron | 40.0% | |
| TCCTTGGCTACCAATTTACT+TGG | - | chr4.4:15341321-15341340 | MS.gene09023:CDS | 40.0% | |
| TCTATGGTTACTCAGACTCA+GGG | - | chr4.4:15341111-15341130 | MS.gene09023:CDS | 40.0% | |
| TGAGTCTGAGTAACCATAGA+AGG | + | chr4.4:15341111-15341130 | None:intergenic | 40.0% | |
| TGATATTCATTTCTTCCGGC+AGG | + | chr4.4:15340788-15340807 | None:intergenic | 40.0% | |
| TGATGCTGTCCTACAAACAT+TGG | - | chr4.4:15341427-15341446 | MS.gene09023:CDS | 40.0% | |
| TGGAGATGACTGAAACATTC+TGG | - | chr4.4:15339762-15339781 | MS.gene09023:intron | 40.0% | |
| TTCTATGGTTACTCAGACTC+AGG | - | chr4.4:15341110-15341129 | MS.gene09023:CDS | 40.0% | |
| TTGATTGACTGCTTAGAAGG+CGG | + | chr4.4:15341163-15341182 | None:intergenic | 40.0% | |
| TTTCCTCTATCTTGACAGAG+CGG | + | chr4.4:15339796-15339815 | None:intergenic | 40.0% | |
| TTTGGTTGAACGGTAACTGA+TGG | + | chr4.4:15340394-15340413 | None:intergenic | 40.0% | |
| ! | AAGTAAATTGGTAGCCAAGG+AGG | + | chr4.4:15341322-15341341 | None:intergenic | 40.0% |
| ! | ACCAAGTAAATTGGTAGCCA+AGG | + | chr4.4:15341325-15341344 | None:intergenic | 40.0% |
| ! | AGAGAAAATGTTTTGCCACG+AGG | + | chr4.4:15341408-15341427 | None:intergenic | 40.0% |
| ! | AGGTGATTGTCAAAGTACCA+AGG | + | chr4.4:15339887-15339906 | None:intergenic | 40.0% |
| ! | AGTAAATTGGTAGCCAAGGA+GGG | + | chr4.4:15341321-15341340 | None:intergenic | 40.0% |
| ! | ATGCGGATTACGTAACAGAT+TGG | + | chr4.4:15340464-15340483 | None:intergenic | 40.0% |
| ! | CAGATGACGGTACAAGATTA+TGG | - | chr4.4:15340281-15340300 | MS.gene09023:intron | 40.0% |
| ! | GACAGTCTTTTACCGCATTT+TGG | + | chr4.4:15341283-15341302 | None:intergenic | 40.0% |
| ! | GATGACGGTACAAGATTATG+GGG | - | chr4.4:15340283-15340302 | MS.gene09023:intron | 40.0% |
| ! | TACTCAGTGGATTCAGATGA+CGG | - | chr4.4:15340268-15340287 | MS.gene09023:intron | 40.0% |
| ! | TTTGAAGGGCGCATTAAATG+CGG | + | chr4.4:15340481-15340500 | None:intergenic | 40.0% |
| ! | TTTTCCATGTCAGCAAGAGT+TGG | + | chr4.4:15340649-15340668 | None:intergenic | 40.0% |
| !! | ATTCTAAGGTTTGGATCTGC+TGG | + | chr4.4:15339695-15339714 | None:intergenic | 40.0% |
| !! | CGGCCTATAATTCTAAGGTT+TGG | + | chr4.4:15339704-15339723 | None:intergenic | 40.0% |
| !! | TACAGTGCTGTTTGGTTGAA+CGG | + | chr4.4:15340404-15340423 | None:intergenic | 40.0% |
| AATCGTAAGAAGTGGAGGTC+TGG | - | chr4.4:15340980-15340999 | MS.gene09023:CDS | 45.0% | |
| AGAATAGTTCAACAGCGAGC+AGG | + | chr4.4:15341030-15341049 | None:intergenic | 45.0% | |
| AGGATCCTATAAACGGCAAC+TGG | - | chr4.4:15341075-15341094 | MS.gene09023:CDS | 45.0% | |
| ATCATATCTTGGAACTGCCG+AGG | - | chr4.4:15340804-15340823 | MS.gene09023:CDS | 45.0% | |
| CAAGTTCATGACCTCCCTAT+AGG | - | chr4.4:15339980-15339999 | MS.gene09023:intron | 45.0% | |
| CCAAAAAGGAACAGACTGGA+GGG | + | chr4.4:15339957-15339976 | None:intergenic | 45.0% | |
| CTATAGGGAGGTCATGAACT+TGG | + | chr4.4:15339982-15340001 | None:intergenic | 45.0% | |
| GACCTCCACTTCTTACGATT+CGG | + | chr4.4:15340980-15340999 | None:intergenic | 45.0% | |
| GCTACATGTCCGAGAAAGTA+GGG | - | chr4.4:15340002-15340021 | MS.gene09023:intron | 45.0% | |
| GGATCCAAAAAGGAACAGAC+TGG | + | chr4.4:15339961-15339980 | None:intergenic | 45.0% | |
| GTACTTTGACAATCACCTCC+TGG | - | chr4.4:15339889-15339908 | MS.gene09023:intron | 45.0% | |
| GTTGACCGAATCGTAAGAAG+TGG | - | chr4.4:15340972-15340991 | MS.gene09023:CDS | 45.0% | |
| TACGAATGGGACGATTTGTG+AGG | + | chr4.4:15339730-15339749 | None:intergenic | 45.0% | |
| TCCAAAAAGGAACAGACTGG+AGG | + | chr4.4:15339958-15339977 | None:intergenic | 45.0% | |
| TCTCGGACATGTAGCCTATA+GGG | + | chr4.4:15339997-15340016 | None:intergenic | 45.0% | |
| TGGAGACTTACTGCCTTCTA+TGG | - | chr4.4:15341095-15341114 | MS.gene09023:CDS | 45.0% | |
| TGGGACGATTTGTGAGGAAA+CGG | + | chr4.4:15339724-15339743 | None:intergenic | 45.0% | |
| TTATCACCAGCTGATAAGCG+CGG | - | chr4.4:15341221-15341240 | MS.gene09023:CDS | 45.0% | |
| TTCTCGGACATGTAGCCTAT+AGG | + | chr4.4:15339998-15340017 | None:intergenic | 45.0% | |
| TTGGCGCAACCAATGTTTGT+AGG | + | chr4.4:15341439-15341458 | None:intergenic | 45.0% | |
| ! | AGTCTCCAGTTGCCGTTTAT+AGG | + | chr4.4:15341083-15341102 | None:intergenic | 45.0% |
| ! | ATGACGCTTGTTTCTCCACT+TGG | + | chr4.4:15340166-15340185 | None:intergenic | 45.0% |
| ! | CTAGTCGGGCTTCTTTTGAA+TGG | + | chr4.4:15341367-15341386 | None:intergenic | 45.0% |
| ! | GAAAATGTTTTGCCACGAGG+AGG | + | chr4.4:15341405-15341424 | None:intergenic | 45.0% |
| ! | GTAAATTGGTAGCCAAGGAG+GGG | + | chr4.4:15341320-15341339 | None:intergenic | 45.0% |
| ! | TAAATTGGTAGCCAAGGAGG+GGG | + | chr4.4:15341319-15341338 | None:intergenic | 45.0% |
| ! | TGGGATGTTACAGTGCTGTT+TGG | + | chr4.4:15340412-15340431 | None:intergenic | 45.0% |
| ! | TTGACATGGTTTGTGCTTGC+AGG | + | chr4.4:15340688-15340707 | None:intergenic | 45.0% |
| ! | TTTGGATCTGCTGGTTGTGA+GGG | + | chr4.4:15339686-15339705 | None:intergenic | 45.0% |
| AAACCTCGAATGAGCCATGG+CGG | + | chr4.4:15341260-15341279 | None:intergenic | 50.0% | |
| AAGGTTCAATGGCAGCTCAG+CGG | - | chr4.4:15340360-15340379 | MS.gene09023:intron | 50.0% | |
| AAGTCTCCGATGATGCACCA+TGG | + | chr4.4:15341191-15341210 | None:intergenic | 50.0% | |
| AGCCCGACTAGATAGAGCTT+TGG | - | chr4.4:15341376-15341395 | MS.gene09023:CDS | 50.0% | |
| CCTGATCCGCGTCTATAAAC+CGG | - | chr4.4:15340863-15340882 | MS.gene09023:CDS | 50.0% | |
| CGGATCAGGTCTTTAATCGC+AGG | + | chr4.4:15340852-15340871 | None:intergenic | 50.0% | |
| CTATCTTGACAGAGCGGACA+GGG | + | chr4.4:15339790-15339809 | None:intergenic | 50.0% | |
| CTGGAAGAACTCCTAGAACC+AGG | + | chr4.4:15339910-15339929 | None:intergenic | 50.0% | |
| GAAGAACTCCTAGAACCAGG+AGG | + | chr4.4:15339907-15339926 | None:intergenic | 50.0% | |
| GACCGAATCGTAAGAAGTGG+AGG | - | chr4.4:15340975-15340994 | MS.gene09023:CDS | 50.0% | |
| GGCTACATGTCCGAGAAAGT+AGG | - | chr4.4:15340001-15340020 | MS.gene09023:intron | 50.0% | |
| GGTTGTGAGGGTAGGATATC+AGG | + | chr4.4:15339674-15339693 | None:intergenic | 50.0% | |
| GTGAGGGTAGGATATCAGGT+TGG | + | chr4.4:15339670-15339689 | None:intergenic | 50.0% | |
| GTGGAGGTCTGGCTATTCTA+TGG | - | chr4.4:15340991-15341010 | MS.gene09023:CDS | 50.0% | |
| GTTGAGAAACAGCGGTCCAA+CGG | - | chr4.4:15340319-15340338 | MS.gene09023:intron | 50.0% | |
| TCCATGTCAGCAAGAGTTGG+CGG | + | chr4.4:15340646-15340665 | None:intergenic | 50.0% | |
| TCTATCTTGACAGAGCGGAC+AGG | + | chr4.4:15339791-15339810 | None:intergenic | 50.0% | |
| TGACAGCAACAGTACTCCCA+TGG | - | chr4.4:15340711-15340730 | MS.gene09023:CDS | 50.0% | |
| TGGAAACCTCGAATGAGCCA+TGG | + | chr4.4:15341263-15341282 | None:intergenic | 50.0% | |
| TGTCCGCTCTGTCAAGATAG+AGG | - | chr4.4:15339790-15339809 | MS.gene09023:intron | 50.0% | |
| ! | ACATGGTTTGTGCTTGCAGG+TGG | + | chr4.4:15340685-15340704 | None:intergenic | 50.0% |
| ! | CCCTCCAGTCTGTTCCTTTT+TGG | - | chr4.4:15339954-15339973 | MS.gene09023:intron | 50.0% |
| ! | GACAATCACCTCCTGGTTCT+AGG | - | chr4.4:15339896-15339915 | MS.gene09023:intron | 50.0% |
| ! | GTTTGGATCTGCTGGTTGTG+AGG | + | chr4.4:15339687-15339706 | None:intergenic | 50.0% |
| !! | TGTTGCTGTCAGCGTTGACA+TGG | + | chr4.4:15340702-15340721 | None:intergenic | 50.0% |
| ACTGGAGGGTGACCTGGTTT+GGG | + | chr4.4:15339943-15339962 | None:intergenic | 55.0% | |
| AGCTCAATCCACTCCCTTGG+AGG | - | chr4.4:15341486-15341505 | MS.gene09023:CDS | 55.0% | |
| ATCGGCAGAGCCTGATTCAC+AGG | - | chr4.4:15340762-15340781 | MS.gene09023:CDS | 55.0% | |
| ATCTTGGAACTGCCGAGGCT+TGG | - | chr4.4:15340809-15340828 | MS.gene09023:CDS | 55.0% | |
| CCGGTTTATAGACGCGGATC+AGG | + | chr4.4:15340866-15340885 | None:intergenic | 55.0% | |
| CCTTGACGTTTCCCAAGCCT+CGG | + | chr4.4:15340824-15340843 | None:intergenic | 55.0% | |
| CGGACATGTAGCCTATAGGG+AGG | + | chr4.4:15339994-15340013 | None:intergenic | 55.0% | |
| GACTGCTTAGAAGGCGGAGA+AGG | + | chr4.4:15341157-15341176 | None:intergenic | 55.0% | |
| GCGGTGGATATCAGAGAGCA+AGG | - | chr4.4:15340341-15340360 | MS.gene09023:intron | 55.0% | |
| GGAGAAGGTCCCAAGACTCA+CGG | + | chr4.4:15341142-15341161 | None:intergenic | 55.0% | |
| TCCGCCAACTCTTGCTGACA+TGG | - | chr4.4:15340642-15340661 | MS.gene09023:CDS | 55.0% | |
| TCTCTGATATCCACCGCCGT+TGG | + | chr4.4:15340338-15340357 | None:intergenic | 55.0% | |
| TCTTGGAACTGCCGAGGCTT+GGG | - | chr4.4:15340810-15340829 | MS.gene09023:CDS | 55.0% | |
| TGCAGCTCAATCCACTCCCT+TGG | - | chr4.4:15341483-15341502 | MS.gene09023:CDS | 55.0% | |
| ! | GAGCTTTGGTATCCTCCTCG+TGG | - | chr4.4:15341390-15341409 | MS.gene09023:CDS | 55.0% |
| ! | GATCTGCTGGTTGTGAGGGT+AGG | + | chr4.4:15339682-15339701 | None:intergenic | 55.0% |
| !! | AAGGGAGTGGATTGAGCTGC+AGG | + | chr4.4:15341484-15341503 | None:intergenic | 55.0% |
| AATGGCTGCCTCCAAGGGAG+TGG | + | chr4.4:15341497-15341516 | None:intergenic | 60.0% | |
| AGCCTGATTCACAGGCCTGC+CGG | - | chr4.4:15340770-15340789 | MS.gene09023:CDS | 60.0% | |
| AGGGAGACGCCGTGAGTCTT+GGG | - | chr4.4:15341130-15341149 | MS.gene09023:CDS | 60.0% | |
| CACCAGCTGATAAGCGCGGA+GGG | - | chr4.4:15341225-15341244 | MS.gene09023:CDS | 60.0% | |
| CCGAGGCTTGGGAAACGTCA+AGG | - | chr4.4:15340821-15340840 | MS.gene09023:CDS | 60.0% | |
| CTCTTTGACCTCCCCCTCCT+TGG | - | chr4.4:15341305-15341324 | MS.gene09023:CDS | 60.0% | |
| GAACAGACTGGAGGGTGACC+TGG | + | chr4.4:15339949-15339968 | None:intergenic | 60.0% | |
| GACTGGAGGGTGACCTGGTT+TGG | + | chr4.4:15339944-15339963 | None:intergenic | 60.0% | |
| GAGAAACAGCGGTCCAACGG+CGG | - | chr4.4:15340322-15340341 | MS.gene09023:intron | 60.0% | |
| GGATTGAGCTGCAGGAGGAG+TGG | + | chr4.4:15341476-15341495 | None:intergenic | 60.0% | |
| GTTCAATGGCAGCTCAGCGG+TGG | - | chr4.4:15340363-15340382 | MS.gene09023:intron | 60.0% | |
| TCACCAGCTGATAAGCGCGG+AGG | - | chr4.4:15341224-15341243 | MS.gene09023:CDS | 60.0% | |
| TGCGGAATGGCTGCCTCCAA+GGG | + | chr4.4:15341502-15341521 | None:intergenic | 60.0% | |
| TTCCGGCAGGCCTGTGAATC+AGG | + | chr4.4:15340775-15340794 | None:intergenic | 60.0% | |
| ! | ATTGGTAGCCAAGGAGGGGG+AGG | + | chr4.4:15341316-15341335 | None:intergenic | 60.0% |
| !! | ATGAGCCATGGCGGACGATC+AGG | + | chr4.4:15341251-15341270 | None:intergenic | 60.0% |
| !! | GGAGTGGATTGAGCTGCAGG+AGG | + | chr4.4:15341481-15341500 | None:intergenic | 60.0% |
| AAACAGCGGTCCAACGGCGG+TGG | - | chr4.4:15340325-15340344 | MS.gene09023:intron | 65.0% | |
| CAGGGAGACGCCGTGAGTCT+TGG | - | chr4.4:15341129-15341148 | MS.gene09023:CDS | 65.0% | |
| CGTCCGCCATGGCTCATTCG+AGG | - | chr4.4:15341254-15341273 | MS.gene09023:CDS | 65.0% | |
| CTGCGGAATGGCTGCCTCCA+AGG | + | chr4.4:15341503-15341522 | None:intergenic | 65.0% | |
| GAGGGCCTGATCGTCCGCCA+TGG | - | chr4.4:15341243-15341262 | MS.gene09023:CDS | 70.0% | |
| GGCCCTCCGCGCTTATCAGC+TGG | + | chr4.4:15341230-15341249 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 15339614 | 15341528 | 15339614 | ID=MS.gene09023 |
| chr4.4 | mRNA | 15339614 | 15341528 | 15339614 | ID=MS.gene09023.t1;Parent=MS.gene09023 |
| chr4.4 | exon | 15340421 | 15341528 | 15340421 | ID=MS.gene09023.t1.exon1;Parent=MS.gene09023.t1 |
| chr4.4 | CDS | 15340421 | 15341528 | 15340421 | ID=cds.MS.gene09023.t1;Parent=MS.gene09023.t1 |
| chr4.4 | exon | 15339614 | 15339654 | 15339614 | ID=MS.gene09023.t1.exon2;Parent=MS.gene09023.t1 |
| chr4.4 | CDS | 15339614 | 15339654 | 15339614 | ID=cds.MS.gene09023.t1;Parent=MS.gene09023.t1 |
| Gene Sequence |
| Protein sequence |
