AlfalfaGEDB | MS.gene000629

M. sativa cultivar XinJiangDaYe / MS.gene000629

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000629.t1	AES70414.1	51.8	226	54	3	1	171	55	280	2.10E-45	192.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000629.t1	G7J017	51.8	226	54	3	1	171	55	280	1.5e-45	192.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene000629	MS.gene63743	PPI
MS.gene031967	MS.gene000629	PPI
MS.gene000629	MS.gene48477	PPI
MS.gene34812	MS.gene000629	PPI
MS.gene000629	MS.gene055223	PPI
MS.gene000629	MS.gene068629	PPI
MS.gene000629	MS.gene027169	PPI
MS.gene000629	MS.gene004417	PPI
MS.gene063214	MS.gene000629	PPI
MS.gene97410	MS.gene000629	PPI
MS.gene32415	MS.gene000629	PPI
MS.gene000629	MS.gene019177	PPI
MS.gene000629	MS.gene031967	PPI
MS.gene000629	MS.gene05436	PPI
MS.gene035626	MS.gene000629	PPI
MS.gene000629	MS.gene038623	PPI
MS.gene067340	MS.gene000629	PPI
MS.gene000629	MS.gene21066	PPI
MS.gene000629	MS.gene055560	PPI
MS.gene000629	MS.gene009213	PPI
MS.gene000629	MS.gene98127	PPI
MS.gene000629	MS.gene003264	PPI
MS.gene000629	MS.gene054652	PPI
MS.gene69495	MS.gene000629	PPI
MS.gene000629	MS.gene000634	PPI
MS.gene038623	MS.gene000629	PPI
MS.gene000629	MS.gene86849	PPI
MS.gene05357	MS.gene000629	PPI
MS.gene032311	MS.gene000629	PPI
MS.gene000629	MS.gene049512	PPI
MS.gene030090	MS.gene000629	PPI
MS.gene000629	MS.gene27329	PPI
MS.gene000629	MS.gene41393	PPI
MS.gene000629	MS.gene80362	PPI
MS.gene000629	MS.gene89815	PPI
MS.gene000629	MS.gene016632	PPI
MS.gene000629	MS.gene018474	PPI
MS.gene000629	MS.gene048088	PPI
MS.gene000629	MS.gene86868	PPI
MS.gene000629	MS.gene058889	PPI
MS.gene021968	MS.gene000629	PPI
MS.gene000629	MS.gene96163	PPI
MS.gene09589	MS.gene000629	PPI
MS.gene43393	MS.gene000629	PPI
MS.gene000629	MS.gene34463	PPI
MS.gene000629	MS.gene042614	PPI
MS.gene000629	MS.gene026680	PPI
MS.gene000629	MS.gene61499	PPI
MS.gene048072	MS.gene000629	PPI
MS.gene000629	MS.gene51804	PPI
MS.gene000629	MS.gene051449	PPI
MS.gene04749	MS.gene000629	PPI
MS.gene000629	MS.gene019165	PPI
MS.gene000629	MS.gene81194	PPI
MS.gene05436	MS.gene000629	PPI
MS.gene000629	MS.gene038394	PPI
MS.gene000629	MS.gene019001	PPI
MS.gene000629	MS.gene53904	PPI
MS.gene055683	MS.gene000629	PPI
MS.gene000629	MS.gene025675	PPI
MS.gene96109	MS.gene000629	PPI
MS.gene000629	MS.gene71637	PPI
MS.gene000629	MS.gene55209	PPI
MS.gene94654	MS.gene000629	PPI
MS.gene000629	MS.gene022929	PPI
MS.gene000629	MS.gene85295	PPI
MS.gene000629	MS.gene52349	PPI
MS.gene000629	MS.gene009781	PPI
MS.gene000629	MS.gene021647	PPI
MS.gene83772	MS.gene000629	PPI
MS.gene000629	MS.gene047954	PPI
MS.gene000629	MS.gene071784	PPI
MS.gene016102	MS.gene000629	PPI
MS.gene96541	MS.gene000629	PPI
MS.gene000629	MS.gene048342	PPI
MS.gene000629	MS.gene069624	PPI
MS.gene63762	MS.gene000629	PPI
MS.gene000629	MS.gene83979	PPI
MS.gene000629	MS.gene013890	PPI
MS.gene000629	MS.gene073582	PPI
MS.gene30208	MS.gene000629	PPI
MS.gene025873	MS.gene000629	PPI
MS.gene012019	MS.gene000629	PPI
MS.gene000629	MS.gene016719	PPI
MS.gene000629	MS.gene048072	PPI
MS.gene000629	MS.gene028714	PPI
MS.gene000629	MS.gene042027	PPI
MS.gene000629	MS.gene048706	PPI
MS.gene05358	MS.gene000629	PPI
MS.gene000629	MS.gene69586	PPI
MS.gene000629	MS.gene45083	PPI
MS.gene000629	MS.gene049561	PPI
MS.gene95561	MS.gene000629	PPI
MS.gene000629	MS.gene008658	PPI
MS.gene000629	MS.gene47792	PPI
MS.gene018196	MS.gene000629	PPI
MS.gene000629	MS.gene49057	PPI
MS.gene065627	MS.gene000629	PPI
MS.gene000629	MS.gene03936	PPI
MS.gene000629	MS.gene43393	PPI
MS.gene57019	MS.gene000629	PPI
MS.gene000629	MS.gene08708	PPI
MS.gene038098	MS.gene000629	PPI
MS.gene000629	MS.gene86275	PPI
MS.gene000629	MS.gene034643	PPI
MS.gene60059	MS.gene000629	PPI
MS.gene000629	MS.gene60059	PPI
MS.gene000629	MS.gene038098	PPI
MS.gene28545	MS.gene000629	PPI
MS.gene000629	MS.gene071320	PPI
MS.gene000629	MS.gene012019	PPI
MS.gene008275	MS.gene000629	PPI
MS.gene000629	MS.gene012889	PPI
MS.gene000629	MS.gene038757	PPI
MS.gene000629	MS.gene000506	PPI
MS.gene064966	MS.gene000629	PPI
MS.gene000629	MS.gene39956	PPI
MS.gene000629	MS.gene028716	PPI
MS.gene000629	MS.gene74639	PPI
MS.gene000629	MS.gene071133	PPI
MS.gene000629	MS.gene60266	PPI
MS.gene000629	MS.gene98467	PPI
MS.gene000629	MS.gene013644	PPI
MS.gene000629	MS.gene024522	PPI
MS.gene000629	MS.gene54051	PPI
MS.gene000629	MS.gene22111	PPI
MS.gene000629	MS.gene049610	PPI
MS.gene000629	MS.gene010290	PPI
MS.gene000629	MS.gene37955	PPI
MS.gene000629	MS.gene92517	PPI
MS.gene036423	MS.gene000629	PPI
MS.gene000629	MS.gene34197	PPI
MS.gene000629	MS.gene045875	PPI
MS.gene000629	MS.gene010890	PPI
MS.gene000629	MS.gene84790	PPI
MS.gene000629	MS.gene055683	PPI
MS.gene000629	MS.gene061579	PPI
MS.gene000629	MS.gene05319	PPI
MS.gene72520	MS.gene000629	PPI
MS.gene000629	MS.gene032311	PPI
MS.gene000629	MS.gene41979	PPI
MS.gene000629	MS.gene04970	PPI
MS.gene66651	MS.gene000629	PPI
MS.gene000629	MS.gene26038	PPI
MS.gene051449	MS.gene000629	PPI
MS.gene000629	MS.gene060788	PPI
MS.gene000629	MS.gene98616	PPI
MS.gene000629	MS.gene43924	PPI
MS.gene000629	MS.gene23521	PPI
MS.gene000629	MS.gene41643	PPI
MS.gene000629	MS.gene77990	PPI
MS.gene000629	MS.gene65546	PPI
MS.gene000629	MS.gene062511	PPI
MS.gene000629	MS.gene008861	PPI
MS.gene000629	MS.gene027994	PPI
MS.gene000629	MS.gene26433	PPI
MS.gene000629	MS.gene007022	PPI
MS.gene000629	MS.gene045614	PPI
MS.gene000629	MS.gene064966	PPI
MS.gene000629	MS.gene69584	PPI
MS.gene30136	MS.gene000629	PPI
MS.gene000629	MS.gene76420	PPI
MS.gene000629	MS.gene46353	PPI
MS.gene000629	MS.gene65471	PPI
MS.gene83979	MS.gene000629	PPI
MS.gene46941	MS.gene000629	PPI
MS.gene000629	MS.gene060386	PPI
MS.gene000629	MS.gene61651	PPI
MS.gene000629	MS.gene29406	PPI
MS.gene47792	MS.gene000629	PPI
MS.gene46948	MS.gene000629	PPI
MS.gene000629	MS.gene63762	PPI
MS.gene000629	MS.gene09023	PPI
MS.gene000629	MS.gene88393	PPI
MS.gene000629	MS.gene054508	PPI
MS.gene93396	MS.gene000629	PPI
MS.gene000629	MS.gene95960	PPI
MS.gene000629	MS.gene053373	PPI
MS.gene000629	MS.gene041264	PPI
MS.gene000629	MS.gene35175	PPI
MS.gene05231	MS.gene000629	PPI
MS.gene000629	MS.gene63150	PPI
MS.gene000629	MS.gene44083	PPI
MS.gene010656	MS.gene000629	PPI
MS.gene000629	MS.gene072852	PPI
MS.gene000629	MS.gene65474	PPI
MS.gene000629	MS.gene018745	PPI
MS.gene000629	MS.gene025401	PPI
MS.gene000629	MS.gene57044	PPI
MS.gene000629	MS.gene015093	PPI
MS.gene05319	MS.gene000629	PPI
MS.gene56991	MS.gene000629	PPI
MS.gene050679	MS.gene000629	PPI
MS.gene000629	MS.gene04134	PPI
MS.gene000629	MS.gene06164	PPI
MS.gene000629	MS.gene50392	PPI
MS.gene000629	MS.gene22730	PPI
MS.gene000629	MS.gene000379	PPI
MS.gene000629	MS.gene032299	PPI
MS.gene000629	MS.gene017586	PPI
MS.gene20246	MS.gene000629	PPI
MS.gene055223	MS.gene000629	PPI
MS.gene000629	MS.gene037634	PPI
MS.gene000629	MS.gene057828	PPI
MS.gene000629	MS.gene08606	PPI
MS.gene000629	MS.gene000640	PPI
MS.gene000629	MS.gene061850	PPI
MS.gene000629	MS.gene09517	PPI
MS.gene000629	MS.gene98756	PPI
MS.gene000629	MS.gene87845	PPI
MS.gene061850	MS.gene000629	PPI
MS.gene000629	MS.gene85308	PPI
MS.gene000629	MS.gene64130	PPI
MS.gene000629	MS.gene62249	PPI
MS.gene000629	MS.gene58419	PPI
MS.gene042559	MS.gene000629	PPI
MS.gene000629	MS.gene046089	PPI
MS.gene98616	MS.gene000629	PPI
MS.gene000629	MS.gene053747	PPI
MS.gene000629	MS.gene021555	PPI
MS.gene000629	MS.gene36069	PPI
MS.gene000629	MS.gene71675	PPI
MS.gene69490	MS.gene000629	PPI
MS.gene000629	MS.gene044729	PPI
MS.gene015248	MS.gene000629	PPI
MS.gene000629	MS.gene60390	PPI
MS.gene000629	MS.gene039692	PPI
MS.gene000629	MS.gene55682	PPI
MS.gene000629	MS.gene002590	PPI
MS.gene013193	MS.gene000629	PPI
MS.gene000629	MS.gene81712	PPI
MS.gene08106	MS.gene000629	PPI
MS.gene000629	MS.gene008927	PPI
MS.gene000629	MS.gene005120	PPI
MS.gene000629	MS.gene024297	PPI
MS.gene000629	MS.gene059269	PPI
MS.gene000629	MS.gene35202	PPI
MS.gene000629	MS.gene057934	PPI
MS.gene000629	MS.gene37537	PPI
MS.gene000629	MS.gene024841	PPI
MS.gene000629	MS.gene069786	PPI
MS.gene000629	MS.gene42010	PPI
MS.gene000629	MS.gene025158	PPI
MS.gene000629	MS.gene40828	PPI
MS.gene062067	MS.gene000629	PPI
MS.gene000629	MS.gene87529	PPI
MS.gene000629	MS.gene51799	PPI
MS.gene000629	MS.gene98471	PPI
MS.gene000629	MS.gene062067	PPI
MS.gene000629	MS.gene97410	PPI
MS.gene000629	MS.gene010656	PPI
MS.gene57044	MS.gene000629	PPI
MS.gene000629	MS.gene013676	PPI
MS.gene038676	MS.gene000629	PPI
MS.gene000629	MS.gene40469	PPI
MS.gene000629	MS.gene65623	PPI
MS.gene000629	MS.gene012748	PPI
MS.gene000629	MS.gene66651	PPI
MS.gene000629	MS.gene025987	PPI
MS.gene042651	MS.gene000629	PPI
MS.gene000629	MS.gene043140	PPI
MS.gene000629	MS.gene02896	PPI
MS.gene000629	MS.gene71588	PPI
MS.gene000629	MS.gene61452	PPI
MS.gene000629	MS.gene05231	PPI
MS.gene000629	MS.gene03149	PPI
MS.gene000629	MS.gene29321	PPI
MS.gene000629	MS.gene037049	PPI
MS.gene000629	MS.gene24278	PPI
MS.gene000629	MS.gene34618	PPI
MS.gene000629	MS.gene59460	PPI
MS.gene000629	MS.gene060773	PPI
MS.gene000629	MS.gene66650	PPI
MS.gene000629	MS.gene009121	PPI
MS.gene000629	MS.gene08713	PPI
MS.gene000629	MS.gene09589	PPI
MS.gene000629	MS.gene70932	PPI
MS.gene000629	MS.gene024405	PPI
MS.gene42903	MS.gene000629	PPI
MS.gene000629	MS.gene021965	PPI
MS.gene000629	MS.gene24070	PPI
MS.gene000629	MS.gene83772	PPI
MS.gene000629	MS.gene73261	PPI
MS.gene000629	MS.gene059736	PPI
MS.gene000629	MS.gene85538	PPI
MS.gene048747	MS.gene000629	PPI
MS.gene000629	MS.gene26844	PPI
MS.gene000629	MS.gene64178	PPI
MS.gene000629	MS.gene055546	PPI
MS.gene22200	MS.gene000629	PPI
MS.gene000629	MS.gene96174	PPI
MS.gene000629	MS.gene074257	PPI
MS.gene000629	MS.gene04749	PPI
MS.gene000629	MS.gene073573	PPI
MS.gene000629	MS.gene28718	PPI
MS.gene000629	MS.gene44144	PPI
MS.gene000629	MS.gene05576	PPI
MS.gene000629	MS.gene060718	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000629.t1	MTR_3g053920	50.000	226	58	3	1	171	55	280	8.26e-58	185
MS.gene000629.t1	MTR_8g463110	79.000	100	21	0	134	233	21	120	2.95e-34	129
MS.gene000629.t1	MTR_4g103530	32.927	164	72	4	1	133	1	157	1.39e-16	75.5
MS.gene000629.t1	MTR_2g061500	81.081	37	7	0	1	37	55	91	1.64e-13	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 76 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTACCGATACGTTGCAAATT+AGG	0.248569	5.1:-19175486	None:intergenic
CTGACGACGGTGTCCGTAAC+TGG	0.261198	5.1:+19175448	MS.gene000629:CDS
CCTATGCCTTGACCTACTTT+TGG	0.272981	5.1:-19175186	None:intergenic
GAATTTGCAGCAGTAGTAAA+AGG	0.292724	5.1:-19175840	None:intergenic
GATGAGGGAAATACAGTAAT+AGG	0.305593	5.1:+19175951	MS.gene000629:CDS
CACCTTCAGCAGTTACATTT+CGG	0.325416	5.1:-19175593	None:intergenic
CTGGTGCTTGGACTGTCTGC+TGG	0.392114	5.1:+19175810	MS.gene000629:CDS
CCTACTTGGCCTCTGGTGCT+TGG	0.396214	5.1:+19175798	MS.gene000629:CDS
CGCGGCACAGCTACGGGAAT+AGG	0.408134	5.1:-19175537	None:intergenic
GCCAAAGCAAAACAAGGTTC+TGG	0.414080	5.1:+19175705	MS.gene000629:CDS
GGTCCAATCTGCTTCCTACT+TGG	0.416973	5.1:+19175784	MS.gene000629:CDS
CTCTTACCGTCCTCTTCAAC+AGG	0.419316	5.1:+19175753	MS.gene000629:CDS
GCAAATTCTCAAGAGGAAAT+CGG	0.445460	5.1:+19175855	MS.gene000629:CDS
TCTGCTTCCTACTTGGCCTC+TGG	0.449798	5.1:+19175791	MS.gene000629:CDS
GCAGCAGTAGTAAAAGGAAA+TGG	0.452091	5.1:-19175834	None:intergenic
GTGATCGTGACCCTCTTGCC+TGG	0.454623	5.1:-19174961	None:intergenic
TCGGTACTGCTGCAACCAAC+AGG	0.460210	5.1:+19175502	MS.gene000629:CDS
GTTGTTGCTGCTGCCTCTGT+TGG	0.468674	5.1:+19175570	MS.gene000629:CDS
GGTTCTGGTGCGAACTCTCC+AGG	0.468743	5.1:+19175720	MS.gene000629:CDS
CAGCAGCAACAACATTTGTA+TGG	0.473033	5.1:-19175560	None:intergenic
TGAGATAAGCACCCCAGTTA+CGG	0.479656	5.1:-19175461	None:intergenic
ATGTCTCGCGCATGGAAGCC+AGG	0.480456	5.1:+19174943	MS.gene000629:CDS
GCAGACAGTCCAAGCACCAG+AGG	0.486586	5.1:-19175807	None:intergenic
TGTAACTGCTGAAGGTGTAC+TGG	0.490437	5.1:+19175599	MS.gene000629:CDS
TCCTCTTCAACAGGTAACTC+AGG	0.492293	5.1:+19175762	MS.gene000629:CDS
TGCAACCAACAGGTGGATAC+AGG	0.492385	5.1:+19175512	MS.gene000629:CDS
TGATTTATCCAGCCAAAAGT+AGG	0.500370	5.1:+19175174	MS.gene000629:intron
TGTATGGCGCGGCACAGCTA+CGG	0.503703	5.1:-19175544	None:intergenic
GTGTGGTGTGCTCGGACATA+CGG	0.504521	5.1:+19175392	MS.gene000629:CDS
CCAAGCACCAGAGGCCAAGT+AGG	0.508320	5.1:-19175798	None:intergenic
TAGGAACAAATGTTAGTCAT+GGG	0.515296	5.1:+19175970	MS.gene000629:CDS
ACATACGGACAAGGTGTGTC+CGG	0.515722	5.1:+19175407	MS.gene000629:CDS
ACCATCCTGTCATTGAAGCT+TGG	0.516139	5.1:-19175624	None:intergenic
GGTAAGAGATGTACCATGCC+TGG	0.518626	5.1:-19175738	None:intergenic
AGGCCAAGTAGGAAGCAGAT+TGG	0.522212	5.1:-19175787	None:intergenic
TGACGACGGTGTCCGTAACT+GGG	0.523857	5.1:+19175449	MS.gene000629:CDS
GAAGAAAATAAAGAGGATGC+TGG	0.533193	5.1:+19175887	MS.gene000629:CDS
TGGTTCCAAGCTTCAATGAC+AGG	0.533487	5.1:+19175619	MS.gene000629:CDS
GTATGGCGCGGCACAGCTAC+GGG	0.534441	5.1:-19175543	None:intergenic
GCTTTCAATTCAAACAGCTC+CGG	0.535106	5.1:-19175426	None:intergenic
TGTCACAGGTGTGGTGTGCT+CGG	0.535855	5.1:+19175384	MS.gene000629:intron
ATAGGAACAAATGTTAGTCA+TGG	0.543713	5.1:+19175969	MS.gene000629:CDS
ATGAATTGTCACCATTCTGA+AGG	0.545818	5.1:-19175911	None:intergenic
CCCTGAGTTACCTGTTGAAG+AGG	0.550310	5.1:-19175763	None:intergenic
CACATGCTGCATCAACTTTG+TGG	0.550332	5.1:-19175020	None:intergenic
AAGCCTAATTTGCAACGTAT+CGG	0.558114	5.1:+19175483	MS.gene000629:CDS
GCAGCATGTGTTCTCGATGA+AGG	0.567591	5.1:+19175033	MS.gene000629:CDS
TACTGCTGCAAATTCTCAAG+AGG	0.568886	5.1:+19175848	MS.gene000629:CDS
CTGAATTGAAGAAAATAAAG+AGG	0.569177	5.1:+19175880	MS.gene000629:CDS
TGGTGCGAACTCTCCAGGCA+TGG	0.581722	5.1:+19175725	MS.gene000629:CDS
CCAAAAGTAGGTCAAGGCAT+AGG	0.584813	5.1:+19175186	MS.gene000629:CDS
AGGATGCTGGCCCTTCAGAA+TGG	0.591615	5.1:+19175900	MS.gene000629:CDS
CGCATGGAAGCCAGGCAAGA+GGG	0.592982	5.1:+19174951	MS.gene000629:CDS
AAGTAGGTCAAGGCATAGGA+AGG	0.603236	5.1:+19175190	MS.gene000629:CDS
ATCCAGCCAAAAGTAGGTCA+AGG	0.604521	5.1:+19175180	MS.gene000629:intron
AGGATCCTGTATCCACCTGT+TGG	0.607557	5.1:-19175517	None:intergenic
TCCAAGCTTCAATGACAGGA+TGG	0.614971	5.1:+19175623	MS.gene000629:CDS
TTTGCTGCTGATGAGGATGA+GGG	0.616001	5.1:+19175936	MS.gene000629:CDS
GTGAGCGTATGTCTCGCGCA+TGG	0.619522	5.1:+19174935	None:intergenic
AGGAACAAATGTTAGTCATG+GGG	0.621613	5.1:+19175971	MS.gene000629:CDS
GGCCGAAATGTAACTGCTGA+AGG	0.622032	5.1:+19175591	MS.gene000629:CDS
GCGCATGGAAGCCAGGCAAG+AGG	0.622091	5.1:+19174950	MS.gene000629:CDS
GGAACAAATGTTAGTCATGG+GGG	0.626566	5.1:+19175972	MS.gene000629:CDS
GACGACGGTGTCCGTAACTG+GGG	0.635519	5.1:+19175450	MS.gene000629:CDS
TGAATTGTCACCATTCTGAA+GGG	0.638224	5.1:-19175910	None:intergenic
CCTCTTCAACAGGTAACTCA+GGG	0.640759	5.1:+19175763	MS.gene000629:CDS
GCAACAACATTTGTATGGCG+CGG	0.643692	5.1:-19175555	None:intergenic
GTACTGCTGCAACCAACAGG+TGG	0.653037	5.1:+19175505	MS.gene000629:CDS
ATGCTGCATCAACTTTGTGG+TGG	0.656754	5.1:-19175017	None:intergenic
TAGGCTGCCAAAGCAAAACA+AGG	0.657259	5.1:+19175699	MS.gene000629:intron
GAACAAATGTTAGTCATGGG+GGG	0.666834	5.1:+19175973	MS.gene000629:CDS
GAGTTACCTGTTGAAGAGGA+CGG	0.671052	5.1:-19175759	None:intergenic
TGTGCTCGGACATACGGACA+AGG	0.675926	5.1:+19175398	MS.gene000629:CDS
GGTCACGATCACTAAGTCTG+TGG	0.683213	5.1:+19174972	MS.gene000629:CDS
AGTTACATTTCGGCCAACAG+AGG	0.697810	5.1:-19175583	None:intergenic
TTTGAATTGAAAGCTGACGA+CGG	0.717213	5.1:+19175435	MS.gene000629:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACTTTAAATATGAAAAGCT+GGG	+	chr5.1:19175354-19175373	MS.gene000629:intron	20.0%
!!	TAACTTTAAATATGAAAAGC+TGG	+	chr5.1:19175353-19175372	MS.gene000629:intron	20.0%
!	CTGAATTGAAGAAAATAAAG+AGG	+	chr5.1:19175880-19175899	MS.gene000629:CDS	25.0%
	ATAGGAACAAATGTTAGTCA+TGG	+	chr5.1:19175969-19175988	MS.gene000629:CDS	30.0%
	TAGGAACAAATGTTAGTCAT+GGG	+	chr5.1:19175970-19175989	MS.gene000629:CDS	30.0%
	TGATAACTTTCATATCGTCA+TGG	+	chr5.1:19175068-19175087	MS.gene000629:intron	30.0%
	TTTGGCTGGATAAATCAAAA+GGG	-	chr5.1:19175171-19175190	None:intergenic	30.0%
!!	TTTTGGCTGGATAAATCAAA+AGG	-	chr5.1:19175172-19175191	None:intergenic	30.0%
	AAAAATCTATGTGGTTCAGC+GGG	-	chr5.1:19175128-19175147	None:intergenic	35.0%
	AAAAGGGTAAGCCATAAACT+TGG	-	chr5.1:19175155-19175174	None:intergenic	35.0%
	AGGAACAAATGTTAGTCATG+GGG	+	chr5.1:19175971-19175990	MS.gene000629:CDS	35.0%
	ATCACTGCAATCAAACATGA+TGG	+	chr5.1:19175663-19175682	MS.gene000629:intron	35.0%
	ATGAATTGTCACCATTCTGA+AGG	-	chr5.1:19175914-19175933	None:intergenic	35.0%
	CAAAAATCTATGTGGTTCAG+CGG	-	chr5.1:19175129-19175148	None:intergenic	35.0%
	CATGTTTGATTGCAGTGATT+TGG	-	chr5.1:19175662-19175681	None:intergenic	35.0%
	GAAGAAAATAAAGAGGATGC+TGG	+	chr5.1:19175887-19175906	MS.gene000629:CDS	35.0%
	GAATTTGCAGCAGTAGTAAA+AGG	-	chr5.1:19175843-19175862	None:intergenic	35.0%
	GATGAGGGAAATACAGTAAT+AGG	+	chr5.1:19175951-19175970	MS.gene000629:CDS	35.0%
	GCAAATTCTCAAGAGGAAAT+CGG	+	chr5.1:19175855-19175874	MS.gene000629:CDS	35.0%
	TGAATTGTCACCATTCTGAA+GGG	-	chr5.1:19175913-19175932	None:intergenic	35.0%
	TGATTTATCCAGCCAAAAGT+AGG	+	chr5.1:19175174-19175193	MS.gene000629:intron	35.0%
	TTTGAATTGAAAGCTGACGA+CGG	+	chr5.1:19175435-19175454	MS.gene000629:CDS	35.0%
!	AAGCCTAATTTGCAACGTAT+CGG	+	chr5.1:19175483-19175502	MS.gene000629:CDS	35.0%
!	GCTGAACCACATAGATTTTT+GGG	+	chr5.1:19175128-19175147	MS.gene000629:intron	35.0%
!!	CAAAAGTACCATTGTTAGCA+CGG	-	chr5.1:19175326-19175345	None:intergenic	35.0%
!!!	GATTTTTGGGTCCAAGTTTA+TGG	+	chr5.1:19175141-19175160	MS.gene000629:intron	35.0%
	AAAAAAGGGAACGACATCAG+GGG	-	chr5.1:19175103-19175122	None:intergenic	40.0%
	ACAAAAAAGGGAACGACATC+AGG	-	chr5.1:19175105-19175124	None:intergenic	40.0%
	ACTTTCATATCGTCATGGAC+CGG	+	chr5.1:19175073-19175092	MS.gene000629:intron	40.0%
	AGATACGCATATAGGAACTG+TGG	-	chr5.1:19175257-19175276	None:intergenic	40.0%
	CAAAAAAGGGAACGACATCA+GGG	-	chr5.1:19175104-19175123	None:intergenic	40.0%
	CACCTTCAGCAGTTACATTT+CGG	-	chr5.1:19175596-19175615	None:intergenic	40.0%
	CAGCAGCAACAACATTTGTA+TGG	-	chr5.1:19175563-19175582	None:intergenic	40.0%
	CTTGGACCCAAAAATCTATG+TGG	-	chr5.1:19175137-19175156	None:intergenic	40.0%
	GAACAAATGTTAGTCATGGG+GGG	+	chr5.1:19175973-19175992	MS.gene000629:CDS	40.0%
	GCAGCAGTAGTAAAAGGAAA+TGG	-	chr5.1:19175837-19175856	None:intergenic	40.0%
	GCTTTCAATTCAAACAGCTC+CGG	-	chr5.1:19175429-19175448	None:intergenic	40.0%
	GGAACAAATGTTAGTCATGG+GGG	+	chr5.1:19175972-19175991	MS.gene000629:CDS	40.0%
	TACTGCTGCAAATTCTCAAG+AGG	+	chr5.1:19175848-19175867	MS.gene000629:CDS	40.0%
	TGCAACACAGATACGCATAT+AGG	-	chr5.1:19175265-19175284	None:intergenic	40.0%
!	CAAGGCATAGGAAGGTTTTT+AGG	+	chr5.1:19175198-19175217	MS.gene000629:CDS	40.0%
!	CGCTGAACCACATAGATTTT+TGG	+	chr5.1:19175127-19175146	MS.gene000629:intron	40.0%
!	GTACCGATACGTTGCAAATT+AGG	-	chr5.1:19175489-19175508	None:intergenic	40.0%
!	TTCATCTTTTGCTGCTGATG+AGG	+	chr5.1:19175929-19175948	MS.gene000629:CDS	40.0%
!!	GGTACTTTTAAGTCGTACGA+TGG	+	chr5.1:19175219-19175238	MS.gene000629:intron	40.0%
!!!	ACCAGAACCTTGTTTTGCTT+TGG	-	chr5.1:19175709-19175728	None:intergenic	40.0%
	AAGTAGGTCAAGGCATAGGA+AGG	+	chr5.1:19175190-19175209	MS.gene000629:CDS	45.0%
	ACCATCCTGTCATTGAAGCT+TGG	-	chr5.1:19175627-19175646	None:intergenic	45.0%
	AGTTACATTTCGGCCAACAG+AGG	-	chr5.1:19175586-19175605	None:intergenic	45.0%
	ATCCAGCCAAAAGTAGGTCA+AGG	+	chr5.1:19175180-19175199	MS.gene000629:intron	45.0%
	ATGCTGCATCAACTTTGTGG+TGG	-	chr5.1:19175020-19175039	None:intergenic	45.0%
	CACATGCTGCATCAACTTTG+TGG	-	chr5.1:19175023-19175042	None:intergenic	45.0%
	CCAAAAGTAGGTCAAGGCAT+AGG	+	chr5.1:19175186-19175205	MS.gene000629:CDS	45.0%
	CCTCTTCAACAGGTAACTCA+GGG	+	chr5.1:19175763-19175782	MS.gene000629:CDS	45.0%
	CTGTTCCCTTGAAACAAGAG+TGG	+	chr5.1:19175295-19175314	MS.gene000629:intron	45.0%
	GAGTTACCTGTTGAAGAGGA+CGG	-	chr5.1:19175762-19175781	None:intergenic	45.0%
	GCAACAACATTTGTATGGCG+CGG	-	chr5.1:19175558-19175577	None:intergenic	45.0%
	GCCAAAGCAAAACAAGGTTC+TGG	+	chr5.1:19175705-19175724	MS.gene000629:CDS	45.0%
	TAGGCTGCCAAAGCAAAACA+AGG	+	chr5.1:19175699-19175718	MS.gene000629:intron	45.0%
	TCCAAGCTTCAATGACAGGA+TGG	+	chr5.1:19175623-19175642	MS.gene000629:CDS	45.0%
	TCCTCTTCAACAGGTAACTC+AGG	+	chr5.1:19175762-19175781	MS.gene000629:CDS	45.0%
	TGAGATAAGCACCCCAGTTA+CGG	-	chr5.1:19175464-19175483	None:intergenic	45.0%
	TGGTTCAGCGGGACAAAAAA+GGG	-	chr5.1:19175117-19175136	None:intergenic	45.0%
	TGGTTCCAAGCTTCAATGAC+AGG	+	chr5.1:19175619-19175638	MS.gene000629:CDS	45.0%
	TTTGCTGCTGATGAGGATGA+GGG	+	chr5.1:19175936-19175955	MS.gene000629:CDS	45.0%
!	ACACGCCACTCTTGTTTCAA+GGG	-	chr5.1:19175303-19175322	None:intergenic	45.0%
!	CCTATGCCTTGACCTACTTT+TGG	-	chr5.1:19175189-19175208	None:intergenic	45.0%
!	TGATGGTCTTGCTGCTCAAT+AGG	+	chr5.1:19175680-19175699	MS.gene000629:intron	45.0%
!	TGTAACTGCTGAAGGTGTAC+TGG	+	chr5.1:19175599-19175618	MS.gene000629:CDS	45.0%
!	TTTTGCTGCTGATGAGGATG+AGG	+	chr5.1:19175935-19175954	MS.gene000629:CDS	45.0%
!!!	AGCTGGGTGTTTTTTGTCAC+AGG	+	chr5.1:19175370-19175389	MS.gene000629:intron	45.0%
!!!	GGTGTTTTTTGTCACAGGTG+TGG	+	chr5.1:19175375-19175394	MS.gene000629:intron	45.0%
	ACATACGGACAAGGTGTGTC+CGG	+	chr5.1:19175407-19175426	MS.gene000629:CDS	50.0%
	AGGATCCTGTATCCACCTGT+TGG	-	chr5.1:19175520-19175539	None:intergenic	50.0%
	AGGCCAAGTAGGAAGCAGAT+TGG	-	chr5.1:19175790-19175809	None:intergenic	50.0%
	CCCTGAGTTACCTGTTGAAG+AGG	-	chr5.1:19175766-19175785	None:intergenic	50.0%
	CTCTTACCGTCCTCTTCAAC+AGG	+	chr5.1:19175753-19175772	MS.gene000629:CDS	50.0%
	GAACGACATCAGGGGAAATC+CGG	-	chr5.1:19175095-19175114	None:intergenic	50.0%
	GCAGCATGTGTTCTCGATGA+AGG	+	chr5.1:19175033-19175052	MS.gene000629:CDS	50.0%
	GGCCGAAATGTAACTGCTGA+AGG	+	chr5.1:19175591-19175610	MS.gene000629:CDS	50.0%
	GGTAAGAGATGTACCATGCC+TGG	-	chr5.1:19175741-19175760	None:intergenic	50.0%
	GGTCACGATCACTAAGTCTG+TGG	+	chr5.1:19174972-19174991	MS.gene000629:CDS	50.0%
	GGTCCAATCTGCTTCCTACT+TGG	+	chr5.1:19175784-19175803	MS.gene000629:CDS	50.0%
	GTGGTTCAGCGGGACAAAAA+AGG	-	chr5.1:19175118-19175137	None:intergenic	50.0%
	GTGTTCTCGATGAAGGTCTG+TGG	+	chr5.1:19175040-19175059	MS.gene000629:intron	50.0%
	TGCAACCAACAGGTGGATAC+AGG	+	chr5.1:19175512-19175531	MS.gene000629:CDS	50.0%
!	GACACGCCACTCTTGTTTCA+AGG	-	chr5.1:19175304-19175323	None:intergenic	50.0%
!!	TGCCTTGACCTACTTTTGGC+TGG	-	chr5.1:19175185-19175204	None:intergenic	50.0%
	AGGATGCTGGCCCTTCAGAA+TGG	+	chr5.1:19175900-19175919	MS.gene000629:CDS	55.0%
	GTACTGCTGCAACCAACAGG+TGG	+	chr5.1:19175505-19175524	MS.gene000629:CDS	55.0%
	GTGTGGTGTGCTCGGACATA+CGG	+	chr5.1:19175392-19175411	MS.gene000629:CDS	55.0%
	GTTGTTGCTGCTGCCTCTGT+TGG	+	chr5.1:19175570-19175589	MS.gene000629:CDS	55.0%
	TCGGTACTGCTGCAACCAAC+AGG	+	chr5.1:19175502-19175521	MS.gene000629:CDS	55.0%
	TCTGCTTCCTACTTGGCCTC+TGG	+	chr5.1:19175791-19175810	MS.gene000629:CDS	55.0%
	TGACGACGGTGTCCGTAACT+GGG	+	chr5.1:19175449-19175468	MS.gene000629:CDS	55.0%
	TGGCGTGTCCGTGCTAACAA+TGG	+	chr5.1:19175315-19175334	MS.gene000629:intron	55.0%
	TGTCACAGGTGTGGTGTGCT+CGG	+	chr5.1:19175384-19175403	MS.gene000629:intron	55.0%
	TGTGCTCGGACATACGGACA+AGG	+	chr5.1:19175398-19175417	MS.gene000629:CDS	55.0%
	ATGTCTCGCGCATGGAAGCC+AGG	+	chr5.1:19174943-19174962	MS.gene000629:CDS	60.0%
	CCAAGCACCAGAGGCCAAGT+AGG	-	chr5.1:19175801-19175820	None:intergenic	60.0%
	CCTACTTGGCCTCTGGTGCT+TGG	+	chr5.1:19175798-19175817	MS.gene000629:CDS	60.0%
	CGCATGGAAGCCAGGCAAGA+GGG	+	chr5.1:19174951-19174970	MS.gene000629:CDS	60.0%
	CTGACGACGGTGTCCGTAAC+TGG	+	chr5.1:19175448-19175467	MS.gene000629:CDS	60.0%
	CTGGTGCTTGGACTGTCTGC+TGG	+	chr5.1:19175810-19175829	MS.gene000629:CDS	60.0%
	GACGACGGTGTCCGTAACTG+GGG	+	chr5.1:19175450-19175469	MS.gene000629:CDS	60.0%
	GCAGACAGTCCAAGCACCAG+AGG	-	chr5.1:19175810-19175829	None:intergenic	60.0%
	GTGATCGTGACCCTCTTGCC+TGG	-	chr5.1:19174964-19174983	None:intergenic	60.0%
	TGGTGCGAACTCTCCAGGCA+TGG	+	chr5.1:19175725-19175744	MS.gene000629:CDS	60.0%
	TGTATGGCGCGGCACAGCTA+CGG	-	chr5.1:19175547-19175566	None:intergenic	60.0%
!	GGTTCTGGTGCGAACTCTCC+AGG	+	chr5.1:19175720-19175739	MS.gene000629:CDS	60.0%
	CGCGGCACAGCTACGGGAAT+AGG	-	chr5.1:19175540-19175559	None:intergenic	65.0%
	GCGCATGGAAGCCAGGCAAG+AGG	+	chr5.1:19174950-19174969	MS.gene000629:CDS	65.0%
	GTATGGCGCGGCACAGCTAC+GGG	-	chr5.1:19175546-19175565	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	19174943	19176007	19174943	ID=MS.gene000629
chr5.1	mRNA	19174943	19176007	19174943	ID=MS.gene000629.t1;Parent=MS.gene000629
chr5.1	exon	19174943	19175054	19174943	ID=MS.gene000629.t1.exon1;Parent=MS.gene000629.t1
chr5.1	CDS	19174943	19175054	19174943	ID=cds.MS.gene000629.t1;Parent=MS.gene000629.t1
chr5.1	exon	19175186	19175219	19175186	ID=MS.gene000629.t1.exon2;Parent=MS.gene000629.t1
chr5.1	CDS	19175186	19175219	19175186	ID=cds.MS.gene000629.t1;Parent=MS.gene000629.t1
chr5.1	exon	19175392	19175644	19175392	ID=MS.gene000629.t1.exon3;Parent=MS.gene000629.t1
chr5.1	CDS	19175392	19175644	19175392	ID=cds.MS.gene000629.t1;Parent=MS.gene000629.t1
chr5.1	exon	19175702	19176007	19175702	ID=MS.gene000629.t1.exon4;Parent=MS.gene000629.t1
chr5.1	CDS	19175702	19176007	19175702	ID=cds.MS.gene000629.t1;Parent=MS.gene000629.t1

Gene Sequence

>MS.gene000629

ATGTCTCGCGCATGGAAGCCAGGCAAGAGGGTCACGATCACTAAGTCTGTGGTTAACTGCTATCTGTTTCAGTTCCACCACAAAGTTGATGCAGCATGTGTTCTCGATGAAGGTCTGTGGCTTTATGATAACTTTCATATCGTCATGGACCGGATTTCCCCTGATGTCGTTCCCTTTTTTGTCCCGCTGAACCACATAGATTTTTGGGTCCAAGTTTATGGCTTACCCTTTTGATTTATCCAGCCAAAAGTAGGTCAAGGCATAGGAAGGTTTTTAGGTACTTTTAAGTCGTACGATGGTCGTAATTCAATCCACAGTTCCTATATGCGTATCTGTGTTGCAATTGATGTGACTGTTCCCTTGAAACAAGAGTGGCGTGTCCGTGCTAACAATGGTACTTTTGTTACTGTTAACTTTAAATATGAAAAGCTGGGTGTTTTTTGTCACAGGTGTGGTGTGCTCGGACATACGGACAAGGTGTGTCCGGAGCTGTTTGAATTGAAAGCTGACGACGGTGTCCGTAACTGGGGTGCTTATCTCAAGCCTAATTTGCAACGTATCGGTACTGCTGCAACCAACAGGTGGATACAGGATCCTATTCCCGTAGCTGTGCCGCGCCATACAAATGTTGTTGCTGCTGCCTCTGTTGGCCGAAATGTAACTGCTGAAGGTGTACTGGTTCCAAGCTTCAATGACAGGATGGTAGCTGTACAGAACCAAATCACTGCAATCAAACATGATGGTCTTGCTGCTCAATAGGCTGCCAAAGCAAAACAAGGTTCTGGTGCGAACTCTCCAGGCATGGTACATCTCTTACCGTCCTCTTCAACAGGTAACTCAGGGTCCAATCTGCTTCCTACTTGGCCTCTGGTGCTTGGACTGTCTGCTGGTCCATTTCCTTTTACTACTGCTGCAAATTCTCAAGAGGAAATCGGCTCTGAATTGAAGAAAATAAAGAGGATGCTGGCCCTTCAGAATGGTGACAATTCATCTTTTGCTGCTGATGAGGATGAGGGAAATACAGTAATAGGAACAAATGTTAGTCATGGGGGGATGATGATATGA

Protein sequence

>MS.gene000629.t1

MSRAWKPGKRVTITKSVVNCYLFQFHHKVDAACVLDEAKSRSRHRKVFRCGVLGHTDKVCPELFELKADDGVRNWGAYLKPNLQRIGTAATNRWIQDPIPVAVPRHTNVVAAASVGRNVTAEGVLVPSFNDRMAAKAKQGSGANSPGMVHLLPSSSTGNSGSNLLPTWPLVLGLSAGPFPFTTAANSQEEIGSELKKIKRMLALQNGDNSSFAADEDEGNTVIGTNVSHGGMMI