AlfalfaGEDB | MS.gene018196

M. sativa cultivar XinJiangDaYe / MS.gene018196

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018196.t1	KEH19519.1	58.5	94	37	1	97	188	26	119	3.00E-18	102.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018196.t1	A0A072TPT4	58.5	94	37	1	97	188	26	119	2.2e-18	102.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene018196	MS.gene009781	PPI
MS.gene018196	MS.gene021647	PPI
MS.gene018196	MS.gene047954	PPI
MS.gene018196	MS.gene071784	PPI
MS.gene018196	MS.gene048342	PPI
MS.gene018196	MS.gene069624	PPI
MS.gene018196	MS.gene83979	PPI
MS.gene018196	MS.gene013890	PPI
MS.gene018196	MS.gene073582	PPI
MS.gene018196	MS.gene016719	PPI
MS.gene018196	MS.gene048072	PPI
MS.gene018196	MS.gene028714	PPI
MS.gene018196	MS.gene042027	PPI
MS.gene018196	MS.gene048706	PPI
MS.gene018196	MS.gene69586	PPI
MS.gene018196	MS.gene45083	PPI
MS.gene018196	MS.gene049561	PPI
MS.gene69490	MS.gene018196	PPI
MS.gene018196	MS.gene008658	PPI
MS.gene018196	MS.gene47792	PPI
MS.gene015248	MS.gene018196	PPI
MS.gene018196	MS.gene49057	PPI
MS.gene018196	MS.gene03936	PPI
MS.gene018196	MS.gene43393	PPI
MS.gene72520	MS.gene018196	PPI
MS.gene013193	MS.gene018196	PPI
MS.gene08106	MS.gene018196	PPI
MS.gene018196	MS.gene08708	PPI
MS.gene018196	MS.gene86275	PPI
MS.gene018196	MS.gene034643	PPI
MS.gene018196	MS.gene60059	PPI
MS.gene018196	MS.gene038098	PPI
MS.gene018196	MS.gene071320	PPI
MS.gene018196	MS.gene012019	PPI
MS.gene018196	MS.gene048747	PPI
MS.gene018196	MS.gene012889	PPI
MS.gene018196	MS.gene038757	PPI
MS.gene018196	MS.gene000506	PPI
MS.gene018196	MS.gene030090	PPI
MS.gene018196	MS.gene39956	PPI
MS.gene018196	MS.gene028716	PPI
MS.gene018196	MS.gene74639	PPI
MS.gene018196	MS.gene071133	PPI
MS.gene018196	MS.gene60266	PPI
MS.gene018196	MS.gene98467	PPI
MS.gene018196	MS.gene013644	PPI
MS.gene018196	MS.gene024522	PPI
MS.gene018196	MS.gene54051	PPI
MS.gene018196	MS.gene22111	PPI
MS.gene018196	MS.gene049610	PPI
MS.gene018196	MS.gene010290	PPI
MS.gene038676	MS.gene018196	PPI
MS.gene018196	MS.gene37955	PPI
MS.gene018196	MS.gene92517	PPI
MS.gene042651	MS.gene018196	PPI
MS.gene018196	MS.gene34197	PPI
MS.gene018196	MS.gene045875	PPI
MS.gene018196	MS.gene010890	PPI
MS.gene018196	MS.gene84790	PPI
MS.gene018196	MS.gene055683	PPI
MS.gene018196	MS.gene061579	PPI
MS.gene018196	MS.gene05319	PPI
MS.gene018196	MS.gene032311	PPI
MS.gene018196	MS.gene41979	PPI
MS.gene018196	MS.gene04970	PPI
MS.gene018196	MS.gene26038	PPI
MS.gene018196	MS.gene060788	PPI
MS.gene018196	MS.gene98616	PPI
MS.gene018196	MS.gene43924	PPI
MS.gene018196	MS.gene23521	PPI
MS.gene018196	MS.gene41643	PPI
MS.gene018196	MS.gene77990	PPI
MS.gene050679	MS.gene018196	PPI
MS.gene018196	MS.gene65546	PPI
MS.gene018196	MS.gene062511	PPI
MS.gene018196	MS.gene008861	PPI
MS.gene018196	MS.gene027994	PPI
MS.gene20246	MS.gene018196	PPI
MS.gene018196	MS.gene26433	PPI
MS.gene018196	MS.gene007022	PPI
MS.gene018196	MS.gene045614	PPI
MS.gene018196	MS.gene064966	PPI
MS.gene018196	MS.gene69584	PPI
MS.gene018196	MS.gene036423	PPI
MS.gene018196	MS.gene76420	PPI
MS.gene018196	MS.gene30136	PPI
MS.gene018196	MS.gene46353	PPI
MS.gene018196	MS.gene65471	PPI
MS.gene018196	MS.gene060386	PPI
MS.gene018196	MS.gene61651	PPI
MS.gene018196	MS.gene29406	PPI
MS.gene042559	MS.gene018196	PPI
MS.gene22200	MS.gene018196	PPI
MS.gene018196	MS.gene63762	PPI
MS.gene018196	MS.gene09023	PPI
MS.gene018196	MS.gene88393	PPI
MS.gene018196	MS.gene054508	PPI
MS.gene018196	MS.gene95960	PPI
MS.gene018196	MS.gene053373	PPI
MS.gene018196	MS.gene041264	PPI
MS.gene018196	MS.gene35175	PPI
MS.gene34812	MS.gene018196	PPI
MS.gene018196	MS.gene63150	PPI
MS.gene018196	MS.gene44083	PPI
MS.gene063214	MS.gene018196	PPI
MS.gene018196	MS.gene000629	PPI
MS.gene018196	MS.gene072852	PPI
MS.gene018196	MS.gene65474	PPI
MS.gene018196	MS.gene018745	PPI
MS.gene018196	MS.gene025401	PPI
MS.gene018196	MS.gene57044	PPI
MS.gene018196	MS.gene015093	PPI
MS.gene067340	MS.gene018196	PPI
MS.gene018196	MS.gene04134	PPI
MS.gene018196	MS.gene06164	PPI
MS.gene018196	MS.gene50392	PPI
MS.gene018196	MS.gene22730	PPI
MS.gene018196	MS.gene000379	PPI
MS.gene018196	MS.gene032299	PPI
MS.gene018196	MS.gene017586	PPI
MS.gene69495	MS.gene018196	PPI
MS.gene018196	MS.gene037634	PPI
MS.gene018196	MS.gene057828	PPI
MS.gene018196	MS.gene08606	PPI
MS.gene05357	MS.gene018196	PPI
MS.gene018196	MS.gene000640	PPI
MS.gene018196	MS.gene061850	PPI
MS.gene018196	MS.gene09517	PPI
MS.gene018196	MS.gene98756	PPI
MS.gene018196	MS.gene87845	PPI
MS.gene018196	MS.gene85308	PPI
MS.gene018196	MS.gene64130	PPI
MS.gene018196	MS.gene62249	PPI
MS.gene018196	MS.gene58419	PPI
MS.gene018196	MS.gene046089	PPI
MS.gene021968	MS.gene018196	PPI
MS.gene018196	MS.gene053747	PPI
MS.gene018196	MS.gene021555	PPI
MS.gene018196	MS.gene36069	PPI
MS.gene018196	MS.gene71675	PPI
MS.gene018196	MS.gene044729	PPI
MS.gene018196	MS.gene60390	PPI
MS.gene018196	MS.gene039692	PPI
MS.gene018196	MS.gene55682	PPI
MS.gene018196	MS.gene002590	PPI
MS.gene018196	MS.gene81712	PPI
MS.gene018196	MS.gene008927	PPI
MS.gene018196	MS.gene005120	PPI
MS.gene018196	MS.gene024297	PPI
MS.gene018196	MS.gene059269	PPI
MS.gene018196	MS.gene35202	PPI
MS.gene018196	MS.gene057934	PPI
MS.gene018196	MS.gene37537	PPI
MS.gene018196	MS.gene024841	PPI
MS.gene018196	MS.gene069786	PPI
MS.gene018196	MS.gene42010	PPI
MS.gene018196	MS.gene025158	PPI
MS.gene42903	MS.gene018196	PPI
MS.gene018196	MS.gene40828	PPI
MS.gene018196	MS.gene87529	PPI
MS.gene018196	MS.gene51799	PPI
MS.gene018196	MS.gene98471	PPI
MS.gene018196	MS.gene062067	PPI
MS.gene018196	MS.gene97410	PPI
MS.gene018196	MS.gene010656	PPI
MS.gene048747	MS.gene018196	PPI
MS.gene018196	MS.gene013676	PPI
MS.gene018196	MS.gene40469	PPI
MS.gene018196	MS.gene65623	PPI
MS.gene018196	MS.gene012748	PPI
MS.gene018196	MS.gene66651	PPI
MS.gene018196	MS.gene025987	PPI
MS.gene018196	MS.gene043140	PPI
MS.gene018196	MS.gene02896	PPI
MS.gene94654	MS.gene018196	PPI
MS.gene018196	MS.gene71588	PPI
MS.gene018196	MS.gene61452	PPI
MS.gene018196	MS.gene05231	PPI
MS.gene018196	MS.gene03149	PPI
MS.gene018196	MS.gene46948	PPI
MS.gene018196	MS.gene29321	PPI
MS.gene32415	MS.gene018196	PPI
MS.gene035626	MS.gene018196	PPI
MS.gene018196	MS.gene037049	PPI
MS.gene018196	MS.gene24278	PPI
MS.gene018196	MS.gene34618	PPI
MS.gene018196	MS.gene59460	PPI
MS.gene30208	MS.gene018196	PPI
MS.gene018196	MS.gene060773	PPI
MS.gene018196	MS.gene66650	PPI
MS.gene018196	MS.gene009121	PPI
MS.gene018196	MS.gene08713	PPI
MS.gene018196	MS.gene09589	PPI
MS.gene018196	MS.gene70932	PPI
MS.gene030090	MS.gene018196	PPI
MS.gene95561	MS.gene018196	PPI
MS.gene018196	MS.gene024405	PPI
MS.gene018196	MS.gene021965	PPI
MS.gene018196	MS.gene32415	PPI
MS.gene018196	MS.gene24070	PPI
MS.gene065627	MS.gene018196	PPI
MS.gene018196	MS.gene83772	PPI
MS.gene018196	MS.gene73261	PPI
MS.gene018196	MS.gene059736	PPI
MS.gene57019	MS.gene018196	PPI
MS.gene018196	MS.gene85538	PPI
MS.gene018196	MS.gene26844	PPI
MS.gene018196	MS.gene64178	PPI
MS.gene018196	MS.gene055546	PPI
MS.gene018196	MS.gene96174	PPI
MS.gene018196	MS.gene074257	PPI
MS.gene018196	MS.gene04749	PPI
MS.gene018196	MS.gene073573	PPI
MS.gene018196	MS.gene28718	PPI
MS.gene018196	MS.gene44144	PPI
MS.gene018196	MS.gene05576	PPI
MS.gene018196	MS.gene060718	PPI
MS.gene018196	MS.gene63743	PPI
MS.gene018196	MS.gene48477	PPI
MS.gene018196	MS.gene055223	PPI
MS.gene008275	MS.gene018196	PPI
MS.gene018196	MS.gene068629	PPI
MS.gene018196	MS.gene027169	PPI
MS.gene018196	MS.gene004417	PPI
MS.gene018196	MS.gene019177	PPI
MS.gene018196	MS.gene031967	PPI
MS.gene018196	MS.gene05436	PPI
MS.gene018196	MS.gene038623	PPI
MS.gene018196	MS.gene21066	PPI
MS.gene018196	MS.gene055560	PPI
MS.gene018196	MS.gene009213	PPI
MS.gene018196	MS.gene98127	PPI
MS.gene018196	MS.gene003264	PPI
MS.gene018196	MS.gene054652	PPI
MS.gene018196	MS.gene000634	PPI
MS.gene018196	MS.gene86849	PPI
MS.gene036423	MS.gene018196	PPI
MS.gene018196	MS.gene049512	PPI
MS.gene018196	MS.gene27329	PPI
MS.gene018196	MS.gene41393	PPI
MS.gene018196	MS.gene80362	PPI
MS.gene018196	MS.gene89815	PPI
MS.gene018196	MS.gene016632	PPI
MS.gene018196	MS.gene018474	PPI
MS.gene018196	MS.gene048088	PPI
MS.gene018196	MS.gene86868	PPI
MS.gene96109	MS.gene018196	PPI
MS.gene018196	MS.gene058889	PPI
MS.gene018196	MS.gene96163	PPI
MS.gene018196	MS.gene050679	PPI
MS.gene30136	MS.gene018196	PPI
MS.gene018196	MS.gene34463	PPI
MS.gene016102	MS.gene018196	PPI
MS.gene46941	MS.gene018196	PPI
MS.gene96541	MS.gene018196	PPI
MS.gene018196	MS.gene042614	PPI
MS.gene018196	MS.gene026680	PPI
MS.gene018196	MS.gene61499	PPI
MS.gene018196	MS.gene51804	PPI
MS.gene018196	MS.gene051449	PPI
MS.gene018196	MS.gene042651	PPI
MS.gene46948	MS.gene018196	PPI
MS.gene018196	MS.gene019165	PPI
MS.gene018196	MS.gene81194	PPI
MS.gene025873	MS.gene018196	PPI
MS.gene05358	MS.gene018196	PPI
MS.gene018196	MS.gene038394	PPI
MS.gene93396	MS.gene018196	PPI
MS.gene018196	MS.gene019001	PPI
MS.gene018196	MS.gene53904	PPI
MS.gene018196	MS.gene025675	PPI
MS.gene018196	MS.gene71637	PPI
MS.gene018196	MS.gene55209	PPI
MS.gene56991	MS.gene018196	PPI
MS.gene018196	MS.gene022929	PPI
MS.gene018196	MS.gene85295	PPI
MS.gene28545	MS.gene018196	PPI
MS.gene018196	MS.gene52349	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018196.t1	MTR_8g463110	57.292	96	39	1	95	188	24	119	3.54e-21	90.5
MS.gene018196.t1	MTR_3g053920	39.735	151	50	2	15	129	135	280	1.34e-20	87.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 61 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATCGGATTCACTTGAAAAT+AGG	0.183920	6.3:-12258715	None:intergenic
CCGGACCGTCCATTGGTTCT+TGG	0.189071	6.3:+12258680	MS.gene018196:CDS
CGGATGATGGAGTCCGTAAC+TGG	0.279694	6.3:+12258328	MS.gene018196:CDS
TGTCACAGGTGTGGAGTTAA+TGG	0.284861	6.3:+12258264	MS.gene018196:intron
GAATCCAGCTCGAACAATTC+AGG	0.289771	6.3:-12258306	None:intergenic
CAAAGGGACGGTGACATCTA+TGG	0.341791	6.3:-12258163	None:intergenic
CTGCTGCCCTCCTCTTCTTC+AGG	0.346225	6.3:+12258635	MS.gene018196:CDS
ATCGGATTCACTTGAAAATA+GGG	0.387354	6.3:-12258714	None:intergenic
TGAATTGTTCGAGCTGGATT+CGG	0.402545	6.3:+12258308	MS.gene018196:CDS
TTCGAGCTGGATTCGGATGA+TGG	0.403028	6.3:+12258315	MS.gene018196:CDS
TACGGCTTCGAATCTGCTTC+CGG	0.410575	6.3:+12258661	MS.gene018196:CDS
GGAGAATCATTTGCCGCTGA+TGG	0.428507	6.3:+12258803	MS.gene018196:CDS
GCAGAGGTGTCTCGACCAAC+AGG	0.452398	6.3:-12258466	None:intergenic
CTGAAGAAGAGGAGGGCAGC+AGG	0.464221	6.3:-12258634	None:intergenic
GTATGTGGTGGCATGGCAGC+AGG	0.480468	6.3:-12258424	None:intergenic
TGCCACCAATCGTTGGCTAC+AGG	0.485246	6.3:+12258393	MS.gene018196:CDS
CTCCTCTTCTTCAGGTACTA+CGG	0.489884	6.3:+12258643	MS.gene018196:CDS
TCTGCTTCCGGACCGTCCAT+TGG	0.500948	6.3:+12258673	MS.gene018196:CDS
GAGAATCATTTGCCGCTGAT+GGG	0.504552	6.3:+12258804	MS.gene018196:CDS
GGTGCTGCTGCTGCTCCTGT+TGG	0.507384	6.3:+12258451	MS.gene018196:CDS
TTCCTCATGCACATCATCAT+CGG	0.509460	6.3:-12258732	None:intergenic
ATGCCCTGAATTGTTCGAGC+TGG	0.514593	6.3:+12258302	MS.gene018196:CDS
ATCCTGTAGCCAACGATTGG+TGG	0.519843	6.3:-12258395	None:intergenic
GGTGGCATGGCAGCAGGGAT+AGG	0.521932	6.3:-12258418	None:intergenic
GGATGATGGAGTCCGTAACT+GGG	0.524928	6.3:+12258329	MS.gene018196:CDS
CCAAGAACCAATGGACGGTC+CGG	0.530560	6.3:-12258680	None:intergenic
AATCCAGCTCGAACAATTCA+GGG	0.530855	6.3:-12258305	None:intergenic
GCAGCAGCACCGTGAGTATG+TGG	0.535545	6.3:-12258439	None:intergenic
GAAGAAAAGAAAGCGTATGC+TGG	0.536652	6.3:+12258769	MS.gene018196:CDS
CGTATGCTGGCCCTTCAGAA+TGG	0.538271	6.3:+12258782	MS.gene018196:CDS
AAACTGGCGTCACAAAGGAT+TGG	0.539584	6.3:+12258364	MS.gene018196:CDS
TCACTTGAAAATAGGGCAGC+GGG	0.540835	6.3:-12258707	None:intergenic
CAAATGATTCTCCATTCTGA+AGG	0.547464	6.3:-12258793	None:intergenic
ATGATGGAGTCCGTAACTGG+GGG	0.549135	6.3:+12258331	MS.gene018196:CDS
CTCCTATATGCGTATCAAGA+TGG	0.552699	6.3:+12258140	None:intergenic
AGGATCCTGTAGCCAACGAT+TGG	0.553045	6.3:-12258398	None:intergenic
AGCCGTAGTACCTGAAGAAG+AGG	0.566371	6.3:-12258645	None:intergenic
GAACTGCTGCCACCAATCGT+TGG	0.566578	6.3:+12258386	MS.gene018196:CDS
GATGATGTGCATGAGGAAAA+CGG	0.569015	6.3:+12258737	MS.gene018196:CDS
TTCACTTGAAAATAGGGCAG+CGG	0.575426	6.3:-12258708	None:intergenic
GATGATGGAGTCCGTAACTG+GGG	0.579407	6.3:+12258330	MS.gene018196:CDS
CGTAGTACCTGAAGAAGAGG+AGG	0.582803	6.3:-12258642	None:intergenic
ATTTCTCATTTCCCCATCAG+CGG	0.586243	6.3:-12258816	None:intergenic
GGATCAAATGTTAGTTGTCG+AGG	0.587387	6.3:+12258848	MS.gene018196:CDS
AGAATCATTTGCCGCTGATG+GGG	0.597704	6.3:+12258805	MS.gene018196:CDS
GGTCGAGACACCTCTGCTGA+AGG	0.602949	6.3:+12258472	MS.gene018196:CDS
GCGGGTAAACCAAGAACCAA+TGG	0.605853	6.3:-12258689	None:intergenic
GCCATGCCACCACATACTCA+CGG	0.616321	6.3:+12258430	MS.gene018196:CDS
CAAAAGCACCATTACTAGCA+CGG	0.626040	6.3:-12258203	None:intergenic
TGGCGTGTCCGTGCTAGTAA+TGG	0.627822	6.3:+12258195	MS.gene018196:CDS
ACCGTGAGTATGTGGTGGCA+TGG	0.637379	6.3:-12258431	None:intergenic
AAATGATTCTCCATTCTGAA+GGG	0.637855	6.3:-12258792	None:intergenic
ATCTCAAACTGGCGTCACAA+AGG	0.639822	6.3:+12258359	MS.gene018196:CDS
GCAGCACCGTGAGTATGTGG+TGG	0.640577	6.3:-12258436	None:intergenic
TGTGCATGAGGAAAACGGCT+CGG	0.646428	6.3:+12258742	MS.gene018196:CDS
TGATGGAGTCCGTAACTGGG+GGG	0.653348	6.3:+12258332	MS.gene018196:CDS
GTAAACCAAGAACCAATGGA+CGG	0.668596	6.3:-12258685	None:intergenic
GTAGTACCTGAAGAAGAGGA+GGG	0.671357	6.3:-12258641	None:intergenic
AGTGCATCTACCTTCAGCAG+AGG	0.674381	6.3:-12258482	None:intergenic
ATCCGATGATGATGTGCATG+AGG	0.687768	6.3:+12258730	MS.gene018196:CDS
TATGTGGTGGCATGGCAGCA+GGG	0.695816	6.3:-12258423	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GAAATGAGAAATTTTTTAAT+AGG	+	chr6.3:12258827-12258846	MS.gene018196:CDS	15.0%
!!!	GATTTTAAATACGAAAAACT+TGG	+	chr6.3:12258234-12258253	MS.gene018196:intron	20.0%
!!!	GTTACAAGTTTTAATCTGTA+TGG	+	chr6.3:12258505-12258524	MS.gene018196:intron	25.0%
	AAATGATTCTCCATTCTGAA+GGG	-	chr6.3:12258795-12258814	None:intergenic	30.0%
	ATCGGATTCACTTGAAAATA+GGG	-	chr6.3:12258717-12258736	None:intergenic	30.0%
	GTGTTAGCTAAAAAAGGTAA+CGG	+	chr6.3:12258587-12258606	MS.gene018196:intron	30.0%
!!!	TTAGTTGTCGAGGTATTTTT+TGG	+	chr6.3:12258858-12258877	MS.gene018196:CDS	30.0%
	CAAATGATTCTCCATTCTGA+AGG	-	chr6.3:12258796-12258815	None:intergenic	35.0%
	CATCGGATTCACTTGAAAAT+AGG	-	chr6.3:12258718-12258737	None:intergenic	35.0%
!	AATGCGGTGTTAGCTAAAAA+AGG	+	chr6.3:12258581-12258600	MS.gene018196:intron	35.0%
	AATCCAGCTCGAACAATTCA+GGG	-	chr6.3:12258308-12258327	None:intergenic	40.0%
	ATTTCTCATTTCCCCATCAG+CGG	-	chr6.3:12258819-12258838	None:intergenic	40.0%
	GATGATGTGCATGAGGAAAA+CGG	+	chr6.3:12258737-12258756	MS.gene018196:CDS	40.0%
	GGATCAAATGTTAGTTGTCG+AGG	+	chr6.3:12258848-12258867	MS.gene018196:CDS	40.0%
	GTAAACCAAGAACCAATGGA+CGG	-	chr6.3:12258688-12258707	None:intergenic	40.0%
	TGAATTGTTCGAGCTGGATT+CGG	+	chr6.3:12258308-12258327	MS.gene018196:CDS	40.0%
	TTCACTTGAAAATAGGGCAG+CGG	-	chr6.3:12258711-12258730	None:intergenic	40.0%
	TTCCTCATGCACATCATCAT+CGG	-	chr6.3:12258735-12258754	None:intergenic	40.0%
	TTTAGCTAACACCGCATTCT+GGG	-	chr6.3:12258579-12258598	None:intergenic	40.0%
!	GAAGAAAAGAAAGCGTATGC+TGG	+	chr6.3:12258769-12258788	MS.gene018196:CDS	40.0%
!!	CAAAAGCACCATTACTAGCA+CGG	-	chr6.3:12258206-12258225	None:intergenic	40.0%
!!	TTTTAGCTAACACCGCATTC+TGG	-	chr6.3:12258580-12258599	None:intergenic	40.0%
!!!	AACTTGGTGTCTTTTGTCAC+AGG	+	chr6.3:12258250-12258269	MS.gene018196:intron	40.0%
!!!	ACACGCCACTCTTTTTTCAA+AGG	-	chr6.3:12258183-12258202	None:intergenic	40.0%
!!!	CACGCCACTCTTTTTTCAAA+GGG	-	chr6.3:12258182-12258201	None:intergenic	40.0%
!!!	CCACTCTTTTTTCAAAGGGA+CGG	-	chr6.3:12258178-12258197	None:intergenic	40.0%
	AAACTGGCGTCACAAAGGAT+TGG	+	chr6.3:12258364-12258383	MS.gene018196:CDS	45.0%
	AGAATCATTTGCCGCTGATG+GGG	+	chr6.3:12258805-12258824	MS.gene018196:CDS	45.0%
	ATCTCAAACTGGCGTCACAA+AGG	+	chr6.3:12258359-12258378	MS.gene018196:CDS	45.0%
	CTCCTCTTCTTCAGGTACTA+CGG	+	chr6.3:12258643-12258662	MS.gene018196:CDS	45.0%
	GAATCCAGCTCGAACAATTC+AGG	-	chr6.3:12258309-12258328	None:intergenic	45.0%
	GAGAATCATTTGCCGCTGAT+GGG	+	chr6.3:12258804-12258823	MS.gene018196:CDS	45.0%
	GTAGTACCTGAAGAAGAGGA+GGG	-	chr6.3:12258644-12258663	None:intergenic	45.0%
	TCACTTGAAAATAGGGCAGC+GGG	-	chr6.3:12258710-12258729	None:intergenic	45.0%
	TGTCACAGGTGTGGAGTTAA+TGG	+	chr6.3:12258264-12258283	MS.gene018196:intron	45.0%
!	ATCCGATGATGATGTGCATG+AGG	+	chr6.3:12258730-12258749	MS.gene018196:CDS	45.0%
!	CCGTCCCTTTGAAAAAAGAG+TGG	+	chr6.3:12258175-12258194	MS.gene018196:CDS	45.0%
	AGCAAGAACATCGTGTCGCA+TGG	-	chr6.3:12258555-12258574	None:intergenic	50.0%
	AGCCGTAGTACCTGAAGAAG+AGG	-	chr6.3:12258648-12258667	None:intergenic	50.0%
	AGGATCCTGTAGCCAACGAT+TGG	-	chr6.3:12258401-12258420	None:intergenic	50.0%
	AGTGCATCTACCTTCAGCAG+AGG	-	chr6.3:12258485-12258504	None:intergenic	50.0%
	ATCCTGTAGCCAACGATTGG+TGG	-	chr6.3:12258398-12258417	None:intergenic	50.0%
	ATGCCCTGAATTGTTCGAGC+TGG	+	chr6.3:12258302-12258321	MS.gene018196:CDS	50.0%
	CAAAGGGACGGTGACATCTA+TGG	-	chr6.3:12258166-12258185	None:intergenic	50.0%
	CGTAGTACCTGAAGAAGAGG+AGG	-	chr6.3:12258645-12258664	None:intergenic	50.0%
	GCGGGTAAACCAAGAACCAA+TGG	-	chr6.3:12258692-12258711	None:intergenic	50.0%
	GGAGAATCATTTGCCGCTGA+TGG	+	chr6.3:12258803-12258822	MS.gene018196:CDS	50.0%
	TACGGCTTCGAATCTGCTTC+CGG	+	chr6.3:12258661-12258680	MS.gene018196:CDS	50.0%
	TGTGCATGAGGAAAACGGCT+CGG	+	chr6.3:12258742-12258761	MS.gene018196:CDS	50.0%
	TGTTCTTGCTGCCCAGAATG+CGG	+	chr6.3:12258565-12258584	MS.gene018196:intron	50.0%
	TTCGAGCTGGATTCGGATGA+TGG	+	chr6.3:12258315-12258334	MS.gene018196:CDS	50.0%
!	ATGATGGAGTCCGTAACTGG+GGG	+	chr6.3:12258331-12258350	MS.gene018196:CDS	50.0%
!	GGTGTCTTTTGTCACAGGTG+TGG	+	chr6.3:12258255-12258274	MS.gene018196:intron	50.0%
!!	GATGATGGAGTCCGTAACTG+GGG	+	chr6.3:12258330-12258349	MS.gene018196:CDS	50.0%
!!	GGATGATGGAGTCCGTAACT+GGG	+	chr6.3:12258329-12258348	MS.gene018196:CDS	50.0%
	ACCGTGAGTATGTGGTGGCA+TGG	-	chr6.3:12258434-12258453	None:intergenic	55.0%
	CCAAGAACCAATGGACGGTC+CGG	-	chr6.3:12258683-12258702	None:intergenic	55.0%
	CGTATGCTGGCCCTTCAGAA+TGG	+	chr6.3:12258782-12258801	MS.gene018196:CDS	55.0%
	GAACTGCTGCCACCAATCGT+TGG	+	chr6.3:12258386-12258405	MS.gene018196:CDS	55.0%
	GAGATACAGCCCCCCAGTTA+CGG	-	chr6.3:12258344-12258363	None:intergenic	55.0%
	GCATGGCAGCGAGTTGTGTT+TGG	-	chr6.3:12258538-12258557	None:intergenic	55.0%
	GCCATGCCACCACATACTCA+CGG	+	chr6.3:12258430-12258449	MS.gene018196:CDS	55.0%
	TATGTGGTGGCATGGCAGCA+GGG	-	chr6.3:12258426-12258445	None:intergenic	55.0%
	TGATGGAGTCCGTAACTGGG+GGG	+	chr6.3:12258332-12258351	MS.gene018196:CDS	55.0%
	TGGCGTGTCCGTGCTAGTAA+TGG	+	chr6.3:12258195-12258214	MS.gene018196:CDS	55.0%
	TGGGGGGCTGTATCTCAAAC+TGG	+	chr6.3:12258348-12258367	MS.gene018196:CDS	55.0%
!	TGCCACCAATCGTTGGCTAC+AGG	+	chr6.3:12258393-12258412	MS.gene018196:CDS	55.0%
!!	CGGATGATGGAGTCCGTAAC+TGG	+	chr6.3:12258328-12258347	MS.gene018196:CDS	55.0%
	CTGAAGAAGAGGAGGGCAGC+AGG	-	chr6.3:12258637-12258656	None:intergenic	60.0%
	CTGCTGCCCTCCTCTTCTTC+AGG	+	chr6.3:12258635-12258654	MS.gene018196:CDS	60.0%
	GCAGCACCGTGAGTATGTGG+TGG	-	chr6.3:12258439-12258458	None:intergenic	60.0%
	GCAGCAGCACCGTGAGTATG+TGG	-	chr6.3:12258442-12258461	None:intergenic	60.0%
	GGTCGAGACACCTCTGCTGA+AGG	+	chr6.3:12258472-12258491	MS.gene018196:CDS	60.0%
	GTATGTGGTGGCATGGCAGC+AGG	-	chr6.3:12258427-12258446	None:intergenic	60.0%
	TCTGCTTCCGGACCGTCCAT+TGG	+	chr6.3:12258673-12258692	MS.gene018196:CDS	60.0%
!!	CCGGACCGTCCATTGGTTCT+TGG	+	chr6.3:12258680-12258699	MS.gene018196:CDS	60.0%
!!	GCAGAGGTGTCTCGACCAAC+AGG	-	chr6.3:12258469-12258488	None:intergenic	60.0%
	GGTGGCATGGCAGCAGGGAT+AGG	-	chr6.3:12258421-12258440	None:intergenic	65.0%
!!	GGTGCTGCTGCTGCTCCTGT+TGG	+	chr6.3:12258451-12258470	MS.gene018196:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	12258147	12258889	12258147	ID=MS.gene018196
chr6.3	mRNA	12258147	12258889	12258147	ID=MS.gene018196.t1;Parent=MS.gene018196
chr6.3	exon	12258147	12258216	12258147	ID=MS.gene018196.t1.exon1;Parent=MS.gene018196.t1
chr6.3	CDS	12258147	12258216	12258147	ID=cds.MS.gene018196.t1;Parent=MS.gene018196.t1
chr6.3	exon	12258272	12258493	12258272	ID=MS.gene018196.t1.exon2;Parent=MS.gene018196.t1
chr6.3	CDS	12258272	12258493	12258272	ID=cds.MS.gene018196.t1;Parent=MS.gene018196.t1
chr6.3	exon	12258603	12258889	12258603	ID=MS.gene018196.t1.exon3;Parent=MS.gene018196.t1
chr6.3	CDS	12258603	12258889	12258603	ID=cds.MS.gene018196.t1;Parent=MS.gene018196.t1

Gene Sequence

>MS.gene018196

ATGCGTATCAAGATGGCCATAGATGTCACCGTCCCTTTGAAAAAAGAGTGGCGTGTCCGTGCTAGTAATGGTGCTTTTGTTACTGTTGATTTTAAATACGAAAAACTTGGTGTCTTTTGTCACAGGTGTGGAGTTAATGGACATACAGACAAGATATGCCCTGAATTGTTCGAGCTGGATTCGGATGATGGAGTCCGTAACTGGGGGGCTGTATCTCAAACTGGCGTCACAAAGGATTGGAACTGCTGCCACCAATCGTTGGCTACAGGATCCTATCCCTGCTGCCATGCCACCACATACTCACGGTGCTGCTGCTGCTCCTGTTGGTCGAGACACCTCTGCTGAAGGTAGATGCACTGTTACAAGTTTTAATCTGTATGGCTGCTTTCCAAACACAACTCGCTGCCATGCGACACGATGTTCTTGCTGCCCAGAATGCGGTGTTAGCTAAAAAAGGTAACGGTGTCAATTCTGCTTGCAAAGTGCACCTGCTGCCCTCCTCTTCTTCAGGTACTACGGCTTCGAATCTGCTTCCGGACCGTCCATTGGTTCTTGGTTTACCCGCTGCCCTATTTTCAAGTGAATCCGATGATGATGTGCATGAGGAAAACGGCTCGGATTTGAAGAAAAGAAAGCGTATGCTGGCCCTTCAGAATGGAGAATCATTTGCCGCTGATGGGGAAATGAGAAATTTTTTAATAGGATCAAATGTTAGTTGTCGAGGTATTTTTTGGATGTCATAG

Protein sequence

>MS.gene018196.t1

MRIKMAIDVTVPLKKEWRVRASNGVELMDIQTRYALNCSSWIRMMESVTGGLYLKLASQRIGTAATNRWLQDPIPAAMPPHTHGAAAAPVGRDTSAEGNGVNSACKVHLLPSSSSGTTASNLLPDRPLVLGLPAALFSSESDDDVHEENGSDLKKRKRMLALQNGESFAADGEMRNFLIGSNVSCRGIFWMS