Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85295.t1 | AES70414.1 | 59.7 | 350 | 70 | 4 | 1 | 349 | 1 | 280 | 1.40E-102 | 383.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85295.t1 | O04244 | 25.9 | 135 | 96 | 2 | 83 | 215 | 6 | 138 | 4.1e-10 | 67.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85295.t1 | G7J017 | 59.7 | 350 | 70 | 4 | 1 | 349 | 1 | 280 | 1.0e-102 | 383.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85295.t1 | MTR_3g053920 | 59.714 | 350 | 70 | 4 | 1 | 349 | 1 | 280 | 2.07e-132 | 381 |
| MS.gene85295.t1 | MTR_2g061500 | 89.922 | 129 | 13 | 0 | 1 | 129 | 1 | 129 | 1.05e-81 | 246 |
| MS.gene85295.t1 | MTR_4g103530 | 79.000 | 100 | 19 | 1 | 55 | 154 | 1 | 98 | 7.52e-52 | 172 |
| MS.gene85295.t1 | MTR_7g011710 | 65.909 | 88 | 30 | 0 | 55 | 142 | 1 | 88 | 9.74e-36 | 129 |
| MS.gene85295.t1 | MTR_6g033215 | 31.214 | 173 | 117 | 1 | 29 | 199 | 122 | 294 | 1.35e-29 | 116 |
| MS.gene85295.t1 | MTR_0010s0370 | 35.955 | 178 | 102 | 4 | 8 | 177 | 4 | 177 | 1.45e-29 | 113 |
| MS.gene85295.t1 | MTR_0010s0350 | 35.955 | 178 | 102 | 4 | 8 | 177 | 4 | 177 | 1.45e-29 | 113 |
| MS.gene85295.t1 | MTR_8g463110 | 60.748 | 107 | 40 | 1 | 292 | 396 | 1 | 107 | 4.03e-25 | 107 |
| MS.gene85295.t1 | MTR_1g036720 | 32.110 | 109 | 72 | 1 | 7 | 113 | 3 | 111 | 5.30e-13 | 65.5 |
| MS.gene85295.t1 | MTR_7g089990 | 34.259 | 108 | 67 | 2 | 106 | 209 | 86 | 193 | 2.65e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85295.t1 | AT2G17920 | 27.230 | 213 | 147 | 5 | 8 | 215 | 9 | 218 | 3.46e-19 | 87.8 |
| MS.gene85295.t1 | AT3G57587 | 29.787 | 141 | 95 | 2 | 77 | 215 | 80 | 218 | 2.10e-17 | 83.6 |
| MS.gene85295.t1 | AT2G41590 | 29.697 | 165 | 101 | 5 | 61 | 215 | 59 | 218 | 1.24e-16 | 81.3 |
| MS.gene85295.t1 | AT5G36228 | 25.773 | 194 | 138 | 4 | 36 | 226 | 39 | 229 | 3.67e-15 | 76.6 |
| MS.gene85295.t1 | AT2G13450 | 26.047 | 215 | 147 | 6 | 8 | 215 | 9 | 218 | 4.29e-15 | 76.6 |
| MS.gene85295.t1 | AT3G31430 | 25.943 | 212 | 149 | 4 | 8 | 215 | 104 | 311 | 7.81e-15 | 75.5 |
| MS.gene85295.t1 | AT3G47920 | 28.369 | 141 | 97 | 2 | 77 | 215 | 9 | 147 | 4.70e-14 | 72.8 |
Find 115 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTAAACCATATCGATTTC+TGG | 0.139789 | 2.4:+45303813 | MS.gene85295:CDS |
| CTGATGATGGAATTCGTAAT+TGG | 0.233983 | 2.4:+45304134 | MS.gene85295:CDS |
| TCGAGGACAGCAGCAGTTTC+AGG | 0.251040 | 2.4:-45303542 | None:intergenic |
| AGACATACGCTCGCTGAAAT+AGG | 0.266771 | 2.4:-45303612 | None:intergenic |
| CAAGGTCTAGGCAGTTTCTT+AGG | 0.304807 | 2.4:+45303884 | MS.gene85295:CDS |
| TGGTTTAGAGGAACAAAGTT+TGG | 0.317569 | 2.4:-45303800 | None:intergenic |
| ATTTGCTGCTGATGGGGTTA+TGG | 0.324485 | 2.4:+45304627 | MS.gene85295:CDS |
| CATCAACCTTGTGATGGAAT+TGG | 0.340552 | 2.4:-45303697 | None:intergenic |
| GGCACTGCTGCTGTTCCTGC+TGG | 0.352610 | 2.4:+45304265 | MS.gene85295:CDS |
| TGCTTGCAAAGTTCAACTTC+TGG | 0.354310 | 2.4:+45304435 | MS.gene85295:CDS |
| CATGGACCTTCCTCTAAAAC+AGG | 0.364428 | 2.4:-45303725 | None:intergenic |
| CAAGTACATGGTCTGCCCTT+TGG | 0.370281 | 2.4:+45303839 | MS.gene85295:CDS |
| TCCTGTTTGTAACCGGCTTA+AGG | 0.374545 | 2.4:-45304165 | None:intergenic |
| AGCAATAACATCTTGTTTCA+TGG | 0.382000 | 2.4:-45304368 | None:intergenic |
| CTTGGATCCAGAAATCGATA+TGG | 0.387027 | 2.4:-45303820 | None:intergenic |
| GCCTTCGAGATTGAGATGAT+TGG | 0.391473 | 2.4:-45303474 | None:intergenic |
| TGCCACCAGCAGCATGGGTT+TGG | 0.392058 | 2.4:-45304246 | None:intergenic |
| TTTGCTGCTGATGGGGTTAT+GGG | 0.393203 | 2.4:+45304628 | MS.gene85295:CDS |
| CAGGTTCAGACTCTAGGTTT+AGG | 0.395705 | 2.4:-45303523 | None:intergenic |
| CCTAGACCTTGACCTACTTT+CGG | 0.406674 | 2.4:-45303872 | None:intergenic |
| GGTTTAGAGGAACAAAGTTT+GGG | 0.408490 | 2.4:-45303799 | None:intergenic |
| GCTCGCTGAAATAGGCAAAC+TGG | 0.409343 | 2.4:-45303604 | None:intergenic |
| GTACCAATCCTGTTTGTAAC+CGG | 0.420302 | 2.4:-45304172 | None:intergenic |
| GTCCTCGAACACTGTCTCAT+TGG | 0.423724 | 2.4:+45303557 | MS.gene85295:CDS |
| CGACACACATGCTGCTGGTA+CGG | 0.425647 | 2.4:+45304291 | MS.gene85295:CDS |
| CCTTCGAGATTGAGATGATT+GGG | 0.431556 | 2.4:-45303473 | None:intergenic |
| AACCTTCCTCGGACAAAGTC+AGG | 0.432512 | 2.4:-45303496 | None:intergenic |
| TGATGATGGAATTCGTAATT+GGG | 0.433240 | 2.4:+45304135 | MS.gene85295:CDS |
| ACCTTAAGCCGGTTACAAAC+AGG | 0.433910 | 2.4:+45304164 | MS.gene85295:CDS |
| CAGAAATCGATATGGTTTAG+AGG | 0.436007 | 2.4:-45303812 | None:intergenic |
| CAAAGGGCAGACCATGTACT+TGG | 0.443471 | 2.4:-45303838 | None:intergenic |
| CAGTTTCAGGTTCAGACTCT+AGG | 0.448348 | 2.4:-45303529 | None:intergenic |
| ATGTCTCGTGCTTGGAAGCC+AGG | 0.453399 | 2.4:+45303629 | MS.gene85295:CDS |
| CGCATGTTTGCCCTTCAGAA+TGG | 0.460573 | 2.4:+45304598 | MS.gene85295:CDS |
| CAAAATCGCCATTGCTTGCA+CGG | 0.462126 | 2.4:-45304009 | None:intergenic |
| TCGGGCCGCCCTCTAGTGCT+TGG | 0.462856 | 2.4:+45304496 | MS.gene85295:CDS |
| GTGCTTGGAAGCCAGGCAAA+TGG | 0.468269 | 2.4:+45303636 | MS.gene85295:CDS |
| TTCGGCCTCTAGTTTACTGT+CGG | 0.474913 | 2.4:+45304477 | MS.gene85295:CDS |
| CAACTCCGAGCAAACTTTGT+CGG | 0.476003 | 2.4:-45304098 | None:intergenic |
| GACCTTGACCTACTTTCGGC+TGG | 0.478639 | 2.4:-45303868 | None:intergenic |
| GCATGTGTGTCGCAGCCAGC+AGG | 0.478799 | 2.4:-45304280 | None:intergenic |
| TCATGGCAGTGAGTTGGTGC+TGG | 0.481293 | 2.4:-45304351 | None:intergenic |
| GGTTTGGCGTGGCACAGATA+CGG | 0.485294 | 2.4:-45304230 | None:intergenic |
| GTAATTGTAACCCATTTGCC+TGG | 0.487121 | 2.4:-45303647 | None:intergenic |
| TGCTTGGAAGCCAGGCAAAT+GGG | 0.489067 | 2.4:+45303637 | MS.gene85295:CDS |
| GGATTTATCCAGCCGAAAGT+AGG | 0.490851 | 2.4:+45303860 | MS.gene85295:CDS |
| GGCTGCGACACACATGCTGC+TGG | 0.492400 | 2.4:+45304286 | MS.gene85295:CDS |
| TGTTACAGGTGTGGTTTACT+CGG | 0.492919 | 2.4:+45304070 | MS.gene85295:CDS |
| TTTGAATTAGAAGCTGATGA+TGG | 0.493558 | 2.4:+45304121 | MS.gene85295:CDS |
| AGGACAATGGCTCGGAATTG+AGG | 0.495303 | 2.4:+45304566 | MS.gene85295:CDS |
| GTTTAGGCTTAAACCTTCCT+CGG | 0.502745 | 2.4:-45303507 | None:intergenic |
| GACACACATGCTGCTGGTAC+GGG | 0.506055 | 2.4:+45304292 | MS.gene85295:CDS |
| AGCAACTTTGATCCGCATAT+AGG | 0.507322 | 2.4:-45303948 | None:intergenic |
| ATGGCTCGGAATTGAGGAAA+AGG | 0.507736 | 2.4:+45304572 | MS.gene85295:CDS |
| AGCAGTGCCACCAGCAGCAT+GGG | 0.508785 | 2.4:-45304251 | None:intergenic |
| CAGCAGTGCCACCAGCAGCA+TGG | 0.513225 | 2.4:-45304252 | None:intergenic |
| CGTGGCACAGATACGGGAAT+GGG | 0.514588 | 2.4:-45304223 | None:intergenic |
| CCGAAAGTAGGTCAAGGTCT+AGG | 0.514843 | 2.4:+45303872 | MS.gene85295:CDS |
| CTTCTGGCTTCCTCCTCTAC+AGG | 0.515293 | 2.4:+45304451 | MS.gene85295:CDS |
| CTTGTTTCATGGCAGTGAGT+TGG | 0.520187 | 2.4:-45304357 | None:intergenic |
| TCAGTCACAAACGGAAAAGC+AGG | 0.520274 | 2.4:-45304523 | None:intergenic |
| TGGCGTGTCCGTGCAAGCAA+TGG | 0.523337 | 2.4:+45304001 | MS.gene85295:CDS |
| GACCAATGAGACAGTGTTCG+AGG | 0.524931 | 2.4:-45303559 | None:intergenic |
| ACAAAGTTTGGGACGACACC+AGG | 0.529423 | 2.4:-45303788 | None:intergenic |
| GTTTGGCGTGGCACAGATAC+GGG | 0.529796 | 2.4:-45304229 | None:intergenic |
| GGAGAACCATTTGCTGCTGA+TGG | 0.530868 | 2.4:+45304619 | MS.gene85295:CDS |
| CCACGCCAAACCCATGCTGC+TGG | 0.534679 | 2.4:+45304241 | MS.gene85295:CDS |
| TGATCCGCATATAGGAGCTA+TGG | 0.539079 | 2.4:-45303940 | None:intergenic |
| GCGAGCGTATGTCTCGTGCT+TGG | 0.539091 | 2.4:+45303621 | MS.gene85295:CDS |
| GGCCTGACTTTGTCCGAGGA+AGG | 0.540156 | 2.4:+45303494 | MS.gene85295:CDS |
| TCGGCCTCTAGTTTACTGTC+GGG | 0.541033 | 2.4:+45304478 | MS.gene85295:CDS |
| ATAACCCCATCAGCAGCAAA+TGG | 0.547713 | 2.4:-45304625 | None:intergenic |
| CAAATGGTTCTCCATTCTGA+AGG | 0.549071 | 2.4:-45304609 | None:intergenic |
| GAGAACCATTTGCTGCTGAT+GGG | 0.549512 | 2.4:+45304620 | MS.gene85295:CDS |
| AAGCCGGTTACAAACAGGAT+TGG | 0.557123 | 2.4:+45304169 | MS.gene85295:CDS |
| GTTTGTGACTGAAAATAATG+AGG | 0.557189 | 2.4:+45304534 | MS.gene85295:CDS |
| GTACTGCTGCAACCAACCGC+TGG | 0.560356 | 2.4:+45304191 | MS.gene85295:CDS |
| CGCCAAACCCATGCTGCTGG+TGG | 0.562675 | 2.4:+45304244 | MS.gene85295:CDS |
| GCGTGGCACAGATACGGGAA+TGG | 0.565336 | 2.4:-45304224 | None:intergenic |
| CTGTGCCTCTGAAGAAAGCA+TGG | 0.565773 | 2.4:+45303981 | MS.gene85295:CDS |
| AAATAATGAGGAAGTGAATG+AGG | 0.570022 | 2.4:+45304546 | MS.gene85295:CDS |
| AAGCATACGATCATTAAAAG+AGG | 0.570232 | 2.4:-45304323 | None:intergenic |
| ACACGCCATGCTTTCTTCAG+AGG | 0.577762 | 2.4:-45303986 | None:intergenic |
| CCAGCAGCATGGGTTTGGCG+TGG | 0.577855 | 2.4:-45304241 | None:intergenic |
| GGTTTGCATCAACCTTGTGA+TGG | 0.579487 | 2.4:-45303703 | None:intergenic |
| GGCCGAAGTTCCTGTAGAGG+AGG | 0.583182 | 2.4:-45304461 | None:intergenic |
| AGAGGCCGAAGTTCCTGTAG+AGG | 0.584110 | 2.4:-45304464 | None:intergenic |
| GCAGGTAAACCAAGCACTAG+AGG | 0.584832 | 2.4:-45304505 | None:intergenic |
| TTGGGGAGCTGACCTTAAGC+CGG | 0.584885 | 2.4:+45304153 | MS.gene85295:CDS |
| GGGATCTTGAAGCCAGCGGT+TGG | 0.585766 | 2.4:-45304203 | None:intergenic |
| ACATACCGACAAAGTTTGCT+CGG | 0.586768 | 2.4:+45304093 | MS.gene85295:CDS |
| TTCGGCTGGATAAATCCAAA+GGG | 0.589026 | 2.4:-45303854 | None:intergenic |
| TTTCGGCTGGATAAATCCAA+AGG | 0.590698 | 2.4:-45303855 | None:intergenic |
| TGAAAATTGTCATACAACCA+TGG | 0.596313 | 2.4:-45303743 | None:intergenic |
| CCCAATCATCTCAATCTCGA+AGG | 0.597021 | 2.4:+45303473 | MS.gene85295:CDS |
| TTCCTCCTCTACAGGAACTT+CGG | 0.598229 | 2.4:+45304459 | MS.gene85295:CDS |
| GATTTCTGGATCCAAGTACA+TGG | 0.608248 | 2.4:+45303827 | MS.gene85295:CDS |
| TTTGTTCCAATTCCATCACA+AGG | 0.609518 | 2.4:+45303691 | MS.gene85295:CDS |
| AGTGAATGAGGACAATGGCT+CGG | 0.613459 | 2.4:+45304558 | MS.gene85295:CDS |
| CAGGTAAACCAAGCACTAGA+GGG | 0.614411 | 2.4:-45304504 | None:intergenic |
| GGCAGTGAGTTGGTGCTGGA+AGG | 0.619157 | 2.4:-45304347 | None:intergenic |
| TTTGCAAGCAGAATTAGAGC+CGG | 0.626746 | 2.4:-45304422 | None:intergenic |
| GTCATGGATCGAATCTCACC+TGG | 0.627964 | 2.4:+45303770 | MS.gene85295:CDS |
| ATCCAGCCGAAAGTAGGTCA+AGG | 0.636561 | 2.4:+45303866 | MS.gene85295:CDS |
| AGGAGCTATGGATTGAGTTG+CGG | 0.639724 | 2.4:-45303928 | None:intergenic |
| CGAAGGCCTGACTTTGTCCG+AGG | 0.640019 | 2.4:+45303490 | MS.gene85295:CDS |
| AAATGGTTCTCCATTCTGAA+GGG | 0.641917 | 2.4:-45304608 | None:intergenic |
| GCGGCCCGACAGTAAACTAG+AGG | 0.652786 | 2.4:-45304482 | None:intergenic |
| AGAACCATTTGCTGCTGATG+GGG | 0.656189 | 2.4:+45304621 | MS.gene85295:CDS |
| CAATCCATAGCTCCTATATG+CGG | 0.665022 | 2.4:+45303936 | MS.gene85295:CDS |
| GATGATGGAATTCGTAATTG+GGG | 0.666972 | 2.4:+45304136 | MS.gene85295:CDS |
| GAGGAAGTGAATGAGGACAA+TGG | 0.671664 | 2.4:+45304553 | MS.gene85295:CDS |
| GTAAACCAAGCACTAGAGGG+CGG | 0.685839 | 2.4:-45304501 | None:intergenic |
| ATGGACCTTCCTCTAAAACA+GGG | 0.693440 | 2.4:-45303724 | None:intergenic |
| GAATGGGATCTTGAAGCCAG+CGG | 0.709248 | 2.4:-45304207 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAAATATGAGAAATT+GGG | + | chr2.4:45304040-45304059 | MS.gene85295:CDS | 10.0% |
| !!! | TAATTTTAAATATGAGAAAT+TGG | + | chr2.4:45304039-45304058 | MS.gene85295:CDS | 10.0% |
| !! | TCATTATTTTCAGTCACAAA+CGG | - | chr2.4:45304535-45304554 | None:intergenic | 25.0% |
| !! | TGACAATTTTCATATTGTCA+TGG | + | chr2.4:45303754-45303773 | MS.gene85295:CDS | 25.0% |
| !!! | ACAACTTTTTCATCAAACAA+AGG | - | chr2.4:45304718-45304737 | None:intergenic | 25.0% |
| AAATAATGAGGAAGTGAATG+AGG | + | chr2.4:45304546-45304565 | MS.gene85295:CDS | 30.0% | |
| AAGCATACGATCATTAAAAG+AGG | - | chr2.4:45304326-45304345 | None:intergenic | 30.0% | |
| ATAGGAACAAATGTTAGTCA+TGG | + | chr2.4:45304661-45304680 | MS.gene85295:intron | 30.0% | |
| GTTATGGGAAACAATGTAAT+AGG | + | chr2.4:45304643-45304662 | MS.gene85295:intron | 30.0% | |
| GTTTGTGACTGAAAATAATG+AGG | + | chr2.4:45304534-45304553 | MS.gene85295:CDS | 30.0% | |
| TAGGAACAAATGTTAGTCAT+GGG | + | chr2.4:45304662-45304681 | MS.gene85295:intron | 30.0% | |
| TGAAAATTGTCATACAACCA+TGG | - | chr2.4:45303746-45303765 | None:intergenic | 30.0% | |
| TTTGAATTAGAAGCTGATGA+TGG | + | chr2.4:45304121-45304140 | MS.gene85295:CDS | 30.0% | |
| ! | AGCAATAACATCTTGTTTCA+TGG | - | chr2.4:45304371-45304390 | None:intergenic | 30.0% |
| !! | TGATGATGGAATTCGTAATT+GGG | + | chr2.4:45304135-45304154 | MS.gene85295:CDS | 30.0% |
| !!! | AATTGGGTGTTTTTTGTTAC+AGG | + | chr2.4:45304056-45304075 | MS.gene85295:CDS | 30.0% |
| AAATGGTTCTCCATTCTGAA+GGG | - | chr2.4:45304611-45304630 | None:intergenic | 35.0% | |
| AATGCAGCGTATGCTAAAAA+AGG | + | chr2.4:45304397-45304416 | MS.gene85295:CDS | 35.0% | |
| AGGAACAAATGTTAGTCATG+GGG | + | chr2.4:45304663-45304682 | MS.gene85295:intron | 35.0% | |
| CAGAAATCGATATGGTTTAG+AGG | - | chr2.4:45303815-45303834 | None:intergenic | 35.0% | |
| GGTTTAGAGGAACAAAGTTT+GGG | - | chr2.4:45303802-45303821 | None:intergenic | 35.0% | |
| TGGTTTAGAGGAACAAAGTT+TGG | - | chr2.4:45303803-45303822 | None:intergenic | 35.0% | |
| TTTGTTCCAATTCCATCACA+AGG | + | chr2.4:45303691-45303710 | MS.gene85295:CDS | 35.0% | |
| ! | TTTAGCATACGCTGCATTTT+GGG | - | chr2.4:45304395-45304414 | None:intergenic | 35.0% |
| ! | TTTTAGCATACGCTGCATTT+TGG | - | chr2.4:45304396-45304415 | None:intergenic | 35.0% |
| !! | CTCTAAACCATATCGATTTC+TGG | + | chr2.4:45303813-45303832 | MS.gene85295:CDS | 35.0% |
| !! | CTGATGATGGAATTCGTAAT+TGG | + | chr2.4:45304134-45304153 | MS.gene85295:CDS | 35.0% |
| !! | GATGATGGAATTCGTAATTG+GGG | + | chr2.4:45304136-45304155 | MS.gene85295:CDS | 35.0% |
| AACAAATGTTAGTCATGGGG+AGG | + | chr2.4:45304666-45304685 | MS.gene85295:intron | 40.0% | |
| AGCAACTTTGATCCGCATAT+AGG | - | chr2.4:45303951-45303970 | None:intergenic | 40.0% | |
| CAAATGGTTCTCCATTCTGA+AGG | - | chr2.4:45304612-45304631 | None:intergenic | 40.0% | |
| CAATCCATAGCTCCTATATG+CGG | + | chr2.4:45303936-45303955 | MS.gene85295:CDS | 40.0% | |
| CCTTCGAGATTGAGATGATT+GGG | - | chr2.4:45303476-45303495 | None:intergenic | 40.0% | |
| CTTGGATCCAGAAATCGATA+TGG | - | chr2.4:45303823-45303842 | None:intergenic | 40.0% | |
| GTAATTGTAACCCATTTGCC+TGG | - | chr2.4:45303650-45303669 | None:intergenic | 40.0% | |
| GTACCAATCCTGTTTGTAAC+CGG | - | chr2.4:45304175-45304194 | None:intergenic | 40.0% | |
| GTTTAGGCTTAAACCTTCCT+CGG | - | chr2.4:45303510-45303529 | None:intergenic | 40.0% | |
| TGCTTGCAAAGTTCAACTTC+TGG | + | chr2.4:45304435-45304454 | MS.gene85295:CDS | 40.0% | |
| TGTTACAGGTGTGGTTTACT+CGG | + | chr2.4:45304070-45304089 | MS.gene85295:CDS | 40.0% | |
| TTCGGCTGGATAAATCCAAA+GGG | - | chr2.4:45303857-45303876 | None:intergenic | 40.0% | |
| TTTCGGCTGGATAAATCCAA+AGG | - | chr2.4:45303858-45303877 | None:intergenic | 40.0% | |
| TTTGCAAGCAGAATTAGAGC+CGG | - | chr2.4:45304425-45304444 | None:intergenic | 40.0% | |
| ! | ACATACCGACAAAGTTTGCT+CGG | + | chr2.4:45304093-45304112 | MS.gene85295:CDS | 40.0% |
| ! | CATCAACCTTGTGATGGAAT+TGG | - | chr2.4:45303700-45303719 | None:intergenic | 40.0% |
| ! | GATTTCTGGATCCAAGTACA+TGG | + | chr2.4:45303827-45303846 | MS.gene85295:CDS | 40.0% |
| ! | GCGGTCATCATAAGCTTTTA+GGG | - | chr2.4:45303912-45303931 | None:intergenic | 40.0% |
| ! | GCGTATGCTAAAAAAGGTAC+CGG | + | chr2.4:45304403-45304422 | MS.gene85295:CDS | 40.0% |
| ! | TGCGGTCATCATAAGCTTTT+AGG | - | chr2.4:45303913-45303932 | None:intergenic | 40.0% |
| !! | ATGGACCTTCCTCTAAAACA+GGG | - | chr2.4:45303727-45303746 | None:intergenic | 40.0% |
| !! | TGATGCAAACCCTGTTTTAG+AGG | + | chr2.4:45303715-45303734 | MS.gene85295:CDS | 40.0% |
| !!! | GGTGTTTTTTGTTACAGGTG+TGG | + | chr2.4:45304061-45304080 | MS.gene85295:CDS | 40.0% |
| AAGCCGGTTACAAACAGGAT+TGG | + | chr2.4:45304169-45304188 | MS.gene85295:CDS | 45.0% | |
| ACCTTAAGCCGGTTACAAAC+AGG | + | chr2.4:45304164-45304183 | MS.gene85295:CDS | 45.0% | |
| AGACATACGCTCGCTGAAAT+AGG | - | chr2.4:45303615-45303634 | None:intergenic | 45.0% | |
| AGTGAATGAGGACAATGGCT+CGG | + | chr2.4:45304558-45304577 | MS.gene85295:CDS | 45.0% | |
| ATAACCCCATCAGCAGCAAA+TGG | - | chr2.4:45304628-45304647 | None:intergenic | 45.0% | |
| CAAAATCGCCATTGCTTGCA+CGG | - | chr2.4:45304012-45304031 | None:intergenic | 45.0% | |
| CAACTCCGAGCAAACTTTGT+CGG | - | chr2.4:45304101-45304120 | None:intergenic | 45.0% | |
| CAAGGTCTAGGCAGTTTCTT+AGG | + | chr2.4:45303884-45303903 | MS.gene85295:CDS | 45.0% | |
| CAGGTAAACCAAGCACTAGA+GGG | - | chr2.4:45304507-45304526 | None:intergenic | 45.0% | |
| CAGGTTCAGACTCTAGGTTT+AGG | - | chr2.4:45303526-45303545 | None:intergenic | 45.0% | |
| CCCAATCATCTCAATCTCGA+AGG | + | chr2.4:45303473-45303492 | MS.gene85295:CDS | 45.0% | |
| CCTAGACCTTGACCTACTTT+CGG | - | chr2.4:45303875-45303894 | None:intergenic | 45.0% | |
| CTTGTTTCATGGCAGTGAGT+TGG | - | chr2.4:45304360-45304379 | None:intergenic | 45.0% | |
| GAGGAAGTGAATGAGGACAA+TGG | + | chr2.4:45304553-45304572 | MS.gene85295:CDS | 45.0% | |
| GCCTTCGAGATTGAGATGAT+TGG | - | chr2.4:45303477-45303496 | None:intergenic | 45.0% | |
| GGATTTATCCAGCCGAAAGT+AGG | + | chr2.4:45303860-45303879 | MS.gene85295:CDS | 45.0% | |
| GGTTTGCATCAACCTTGTGA+TGG | - | chr2.4:45303706-45303725 | None:intergenic | 45.0% | |
| TCAGTCACAAACGGAAAAGC+AGG | - | chr2.4:45304526-45304545 | None:intergenic | 45.0% | |
| TGATCCGCATATAGGAGCTA+TGG | - | chr2.4:45303943-45303962 | None:intergenic | 45.0% | |
| TTCCTCCTCTACAGGAACTT+CGG | + | chr2.4:45304459-45304478 | MS.gene85295:CDS | 45.0% | |
| TTTGCTGCTGATGGGGTTAT+GGG | + | chr2.4:45304628-45304647 | MS.gene85295:CDS | 45.0% | |
| ! | AGAACCATTTGCTGCTGATG+GGG | + | chr2.4:45304621-45304640 | MS.gene85295:CDS | 45.0% |
| ! | AGGAGCTATGGATTGAGTTG+CGG | - | chr2.4:45303931-45303950 | None:intergenic | 45.0% |
| ! | ATGGCTCGGAATTGAGGAAA+AGG | + | chr2.4:45304572-45304591 | MS.gene85295:CDS | 45.0% |
| ! | ATTTGCTGCTGATGGGGTTA+TGG | + | chr2.4:45304627-45304646 | MS.gene85295:CDS | 45.0% |
| ! | GAGAACCATTTGCTGCTGAT+GGG | + | chr2.4:45304620-45304639 | MS.gene85295:CDS | 45.0% |
| ! | TCCTGTTTGTAACCGGCTTA+AGG | - | chr2.4:45304168-45304187 | None:intergenic | 45.0% |
| ! | TTCGGCCTCTAGTTTACTGT+CGG | + | chr2.4:45304477-45304496 | MS.gene85295:CDS | 45.0% |
| !! | CAGTTTCAGGTTCAGACTCT+AGG | - | chr2.4:45303532-45303551 | None:intergenic | 45.0% |
| !! | CATGGACCTTCCTCTAAAAC+AGG | - | chr2.4:45303728-45303747 | None:intergenic | 45.0% |
| !!! | CTGTTTTAGAGGAAGGTCCA+TGG | + | chr2.4:45303726-45303745 | MS.gene85295:CDS | 45.0% |
| !!! | GCAAACCCTGTTTTAGAGGA+AGG | + | chr2.4:45303719-45303738 | MS.gene85295:CDS | 45.0% |
| AACCTTCCTCGGACAAAGTC+AGG | - | chr2.4:45303499-45303518 | None:intergenic | 50.0% | |
| ACACGCCATGCTTTCTTCAG+AGG | - | chr2.4:45303989-45304008 | None:intergenic | 50.0% | |
| ATCCAGCCGAAAGTAGGTCA+AGG | + | chr2.4:45303866-45303885 | MS.gene85295:CDS | 50.0% | |
| CAAAGGGCAGACCATGTACT+TGG | - | chr2.4:45303841-45303860 | None:intergenic | 50.0% | |
| CAAGTACATGGTCTGCCCTT+TGG | + | chr2.4:45303839-45303858 | MS.gene85295:CDS | 50.0% | |
| CCGAAAGTAGGTCAAGGTCT+AGG | + | chr2.4:45303872-45303891 | MS.gene85295:CDS | 50.0% | |
| CGCATGTTTGCCCTTCAGAA+TGG | + | chr2.4:45304598-45304617 | MS.gene85295:CDS | 50.0% | |
| GAATGGGATCTTGAAGCCAG+CGG | - | chr2.4:45304210-45304229 | None:intergenic | 50.0% | |
| GACCAATGAGACAGTGTTCG+AGG | - | chr2.4:45303562-45303581 | None:intergenic | 50.0% | |
| GCAGGTAAACCAAGCACTAG+AGG | - | chr2.4:45304508-45304527 | None:intergenic | 50.0% | |
| GCTCGCTGAAATAGGCAAAC+TGG | - | chr2.4:45303607-45303626 | None:intergenic | 50.0% | |
| GTAAACCAAGCACTAGAGGG+CGG | - | chr2.4:45304504-45304523 | None:intergenic | 50.0% | |
| GTCATGGATCGAATCTCACC+TGG | + | chr2.4:45303770-45303789 | MS.gene85295:CDS | 50.0% | |
| GTCCTCGAACACTGTCTCAT+TGG | + | chr2.4:45303557-45303576 | MS.gene85295:CDS | 50.0% | |
| TGCTTGGAAGCCAGGCAAAT+GGG | + | chr2.4:45303637-45303656 | MS.gene85295:CDS | 50.0% | |
| ! | ACAAAGTTTGGGACGACACC+AGG | - | chr2.4:45303791-45303810 | None:intergenic | 50.0% |
| ! | AGGACAATGGCTCGGAATTG+AGG | + | chr2.4:45304566-45304585 | MS.gene85295:CDS | 50.0% |
| ! | CTGTGCCTCTGAAGAAAGCA+TGG | + | chr2.4:45303981-45304000 | MS.gene85295:CDS | 50.0% |
| ! | GGAGAACCATTTGCTGCTGA+TGG | + | chr2.4:45304619-45304638 | MS.gene85295:CDS | 50.0% |
| ! | TCGGCCTCTAGTTTACTGTC+GGG | + | chr2.4:45304478-45304497 | MS.gene85295:CDS | 50.0% |
| AGAGGCCGAAGTTCCTGTAG+AGG | - | chr2.4:45304467-45304486 | None:intergenic | 55.0% | |
| ATGTCTCGTGCTTGGAAGCC+AGG | + | chr2.4:45303629-45303648 | MS.gene85295:CDS | 55.0% | |
| CGACACACATGCTGCTGGTA+CGG | + | chr2.4:45304291-45304310 | MS.gene85295:CDS | 55.0% | |
| CGTGGCACAGATACGGGAAT+GGG | - | chr2.4:45304226-45304245 | None:intergenic | 55.0% | |
| GACACACATGCTGCTGGTAC+GGG | + | chr2.4:45304292-45304311 | MS.gene85295:CDS | 55.0% | |
| GACCTTGACCTACTTTCGGC+TGG | - | chr2.4:45303871-45303890 | None:intergenic | 55.0% | |
| GGTTTGGCGTGGCACAGATA+CGG | - | chr2.4:45304233-45304252 | None:intergenic | 55.0% | |
| GTGCTTGGAAGCCAGGCAAA+TGG | + | chr2.4:45303636-45303655 | MS.gene85295:CDS | 55.0% | |
| GTTTGGCGTGGCACAGATAC+GGG | - | chr2.4:45304232-45304251 | None:intergenic | 55.0% | |
| TCGAGGACAGCAGCAGTTTC+AGG | - | chr2.4:45303545-45303564 | None:intergenic | 55.0% | |
| TTGGGGAGCTGACCTTAAGC+CGG | + | chr2.4:45304153-45304172 | MS.gene85295:CDS | 55.0% | |
| !! | CTTCTGGCTTCCTCCTCTAC+AGG | + | chr2.4:45304451-45304470 | MS.gene85295:CDS | 55.0% |
| !! | TCATGGCAGTGAGTTGGTGC+TGG | - | chr2.4:45304354-45304373 | None:intergenic | 55.0% |
| AGCAGTGCCACCAGCAGCAT+GGG | - | chr2.4:45304254-45304273 | None:intergenic | 60.0% | |
| CGAAGGCCTGACTTTGTCCG+AGG | + | chr2.4:45303490-45303509 | MS.gene85295:CDS | 60.0% | |
| GCGAGCGTATGTCTCGTGCT+TGG | + | chr2.4:45303621-45303640 | MS.gene85295:CDS | 60.0% | |
| GCGGCCCGACAGTAAACTAG+AGG | - | chr2.4:45304485-45304504 | None:intergenic | 60.0% | |
| GCGTGGCACAGATACGGGAA+TGG | - | chr2.4:45304227-45304246 | None:intergenic | 60.0% | |
| GGCCGAAGTTCCTGTAGAGG+AGG | - | chr2.4:45304464-45304483 | None:intergenic | 60.0% | |
| GGCCTGACTTTGTCCGAGGA+AGG | + | chr2.4:45303494-45303513 | MS.gene85295:CDS | 60.0% | |
| GGGATCTTGAAGCCAGCGGT+TGG | - | chr2.4:45304206-45304225 | None:intergenic | 60.0% | |
| GTACTGCTGCAACCAACCGC+TGG | + | chr2.4:45304191-45304210 | MS.gene85295:CDS | 60.0% | |
| TGCCACCAGCAGCATGGGTT+TGG | - | chr2.4:45304249-45304268 | None:intergenic | 60.0% | |
| TGGCGTGTCCGTGCAAGCAA+TGG | + | chr2.4:45304001-45304020 | MS.gene85295:CDS | 60.0% | |
| !! | GGCAGTGAGTTGGTGCTGGA+AGG | - | chr2.4:45304350-45304369 | None:intergenic | 60.0% |
| CAGCAGTGCCACCAGCAGCA+TGG | - | chr2.4:45304255-45304274 | None:intergenic | 65.0% | |
| CCACGCCAAACCCATGCTGC+TGG | + | chr2.4:45304241-45304260 | MS.gene85295:CDS | 65.0% | |
| CCAGCAGCATGGGTTTGGCG+TGG | - | chr2.4:45304244-45304263 | None:intergenic | 65.0% | |
| CGCCAAACCCATGCTGCTGG+TGG | + | chr2.4:45304244-45304263 | MS.gene85295:CDS | 65.0% | |
| GCATGTGTGTCGCAGCCAGC+AGG | - | chr2.4:45304283-45304302 | None:intergenic | 65.0% | |
| GGCACTGCTGCTGTTCCTGC+TGG | + | chr2.4:45304265-45304284 | MS.gene85295:CDS | 65.0% | |
| GGCTGCGACACACATGCTGC+TGG | + | chr2.4:45304286-45304305 | MS.gene85295:CDS | 65.0% | |
| TCGGGCCGCCCTCTAGTGCT+TGG | + | chr2.4:45304496-45304515 | MS.gene85295:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 45303467 | 45304739 | 45303467 | ID=MS.gene85295 |
| chr2.4 | mRNA | 45303467 | 45304739 | 45303467 | ID=MS.gene85295.t1;Parent=MS.gene85295 |
| chr2.4 | exon | 45303467 | 45304657 | 45303467 | ID=MS.gene85295.t1.exon1;Parent=MS.gene85295.t1 |
| chr2.4 | CDS | 45303467 | 45304657 | 45303467 | ID=cds.MS.gene85295.t1;Parent=MS.gene85295.t1 |
| chr2.4 | exon | 45304734 | 45304739 | 45304734 | ID=MS.gene85295.t1.exon2;Parent=MS.gene85295.t1 |
| chr2.4 | CDS | 45304734 | 45304739 | 45304734 | ID=cds.MS.gene85295.t1;Parent=MS.gene85295.t1 |
| Gene Sequence |
| Protein sequence |