Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85295.t1 | AES70414.1 | 59.7 | 350 | 70 | 4 | 1 | 349 | 1 | 280 | 1.40E-102 | 383.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85295.t1 | O04244 | 25.9 | 135 | 96 | 2 | 83 | 215 | 6 | 138 | 4.1e-10 | 67.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85295.t1 | G7J017 | 59.7 | 350 | 70 | 4 | 1 | 349 | 1 | 280 | 1.0e-102 | 383.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85295.t1 | MTR_3g053920 | 59.714 | 350 | 70 | 4 | 1 | 349 | 1 | 280 | 2.07e-132 | 381 |
MS.gene85295.t1 | MTR_2g061500 | 89.922 | 129 | 13 | 0 | 1 | 129 | 1 | 129 | 1.05e-81 | 246 |
MS.gene85295.t1 | MTR_4g103530 | 79.000 | 100 | 19 | 1 | 55 | 154 | 1 | 98 | 7.52e-52 | 172 |
MS.gene85295.t1 | MTR_7g011710 | 65.909 | 88 | 30 | 0 | 55 | 142 | 1 | 88 | 9.74e-36 | 129 |
MS.gene85295.t1 | MTR_6g033215 | 31.214 | 173 | 117 | 1 | 29 | 199 | 122 | 294 | 1.35e-29 | 116 |
MS.gene85295.t1 | MTR_0010s0370 | 35.955 | 178 | 102 | 4 | 8 | 177 | 4 | 177 | 1.45e-29 | 113 |
MS.gene85295.t1 | MTR_0010s0350 | 35.955 | 178 | 102 | 4 | 8 | 177 | 4 | 177 | 1.45e-29 | 113 |
MS.gene85295.t1 | MTR_8g463110 | 60.748 | 107 | 40 | 1 | 292 | 396 | 1 | 107 | 4.03e-25 | 107 |
MS.gene85295.t1 | MTR_1g036720 | 32.110 | 109 | 72 | 1 | 7 | 113 | 3 | 111 | 5.30e-13 | 65.5 |
MS.gene85295.t1 | MTR_7g089990 | 34.259 | 108 | 67 | 2 | 106 | 209 | 86 | 193 | 2.65e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85295.t1 | AT2G17920 | 27.230 | 213 | 147 | 5 | 8 | 215 | 9 | 218 | 3.46e-19 | 87.8 |
MS.gene85295.t1 | AT3G57587 | 29.787 | 141 | 95 | 2 | 77 | 215 | 80 | 218 | 2.10e-17 | 83.6 |
MS.gene85295.t1 | AT2G41590 | 29.697 | 165 | 101 | 5 | 61 | 215 | 59 | 218 | 1.24e-16 | 81.3 |
MS.gene85295.t1 | AT5G36228 | 25.773 | 194 | 138 | 4 | 36 | 226 | 39 | 229 | 3.67e-15 | 76.6 |
MS.gene85295.t1 | AT2G13450 | 26.047 | 215 | 147 | 6 | 8 | 215 | 9 | 218 | 4.29e-15 | 76.6 |
MS.gene85295.t1 | AT3G31430 | 25.943 | 212 | 149 | 4 | 8 | 215 | 104 | 311 | 7.81e-15 | 75.5 |
MS.gene85295.t1 | AT3G47920 | 28.369 | 141 | 97 | 2 | 77 | 215 | 9 | 147 | 4.70e-14 | 72.8 |
Find 115 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTAAACCATATCGATTTC+TGG | 0.139789 | 2.4:+45303813 | MS.gene85295:CDS |
CTGATGATGGAATTCGTAAT+TGG | 0.233983 | 2.4:+45304134 | MS.gene85295:CDS |
TCGAGGACAGCAGCAGTTTC+AGG | 0.251040 | 2.4:-45303542 | None:intergenic |
AGACATACGCTCGCTGAAAT+AGG | 0.266771 | 2.4:-45303612 | None:intergenic |
CAAGGTCTAGGCAGTTTCTT+AGG | 0.304807 | 2.4:+45303884 | MS.gene85295:CDS |
TGGTTTAGAGGAACAAAGTT+TGG | 0.317569 | 2.4:-45303800 | None:intergenic |
ATTTGCTGCTGATGGGGTTA+TGG | 0.324485 | 2.4:+45304627 | MS.gene85295:CDS |
CATCAACCTTGTGATGGAAT+TGG | 0.340552 | 2.4:-45303697 | None:intergenic |
GGCACTGCTGCTGTTCCTGC+TGG | 0.352610 | 2.4:+45304265 | MS.gene85295:CDS |
TGCTTGCAAAGTTCAACTTC+TGG | 0.354310 | 2.4:+45304435 | MS.gene85295:CDS |
CATGGACCTTCCTCTAAAAC+AGG | 0.364428 | 2.4:-45303725 | None:intergenic |
CAAGTACATGGTCTGCCCTT+TGG | 0.370281 | 2.4:+45303839 | MS.gene85295:CDS |
TCCTGTTTGTAACCGGCTTA+AGG | 0.374545 | 2.4:-45304165 | None:intergenic |
AGCAATAACATCTTGTTTCA+TGG | 0.382000 | 2.4:-45304368 | None:intergenic |
CTTGGATCCAGAAATCGATA+TGG | 0.387027 | 2.4:-45303820 | None:intergenic |
GCCTTCGAGATTGAGATGAT+TGG | 0.391473 | 2.4:-45303474 | None:intergenic |
TGCCACCAGCAGCATGGGTT+TGG | 0.392058 | 2.4:-45304246 | None:intergenic |
TTTGCTGCTGATGGGGTTAT+GGG | 0.393203 | 2.4:+45304628 | MS.gene85295:CDS |
CAGGTTCAGACTCTAGGTTT+AGG | 0.395705 | 2.4:-45303523 | None:intergenic |
CCTAGACCTTGACCTACTTT+CGG | 0.406674 | 2.4:-45303872 | None:intergenic |
GGTTTAGAGGAACAAAGTTT+GGG | 0.408490 | 2.4:-45303799 | None:intergenic |
GCTCGCTGAAATAGGCAAAC+TGG | 0.409343 | 2.4:-45303604 | None:intergenic |
GTACCAATCCTGTTTGTAAC+CGG | 0.420302 | 2.4:-45304172 | None:intergenic |
GTCCTCGAACACTGTCTCAT+TGG | 0.423724 | 2.4:+45303557 | MS.gene85295:CDS |
CGACACACATGCTGCTGGTA+CGG | 0.425647 | 2.4:+45304291 | MS.gene85295:CDS |
CCTTCGAGATTGAGATGATT+GGG | 0.431556 | 2.4:-45303473 | None:intergenic |
AACCTTCCTCGGACAAAGTC+AGG | 0.432512 | 2.4:-45303496 | None:intergenic |
TGATGATGGAATTCGTAATT+GGG | 0.433240 | 2.4:+45304135 | MS.gene85295:CDS |
ACCTTAAGCCGGTTACAAAC+AGG | 0.433910 | 2.4:+45304164 | MS.gene85295:CDS |
CAGAAATCGATATGGTTTAG+AGG | 0.436007 | 2.4:-45303812 | None:intergenic |
CAAAGGGCAGACCATGTACT+TGG | 0.443471 | 2.4:-45303838 | None:intergenic |
CAGTTTCAGGTTCAGACTCT+AGG | 0.448348 | 2.4:-45303529 | None:intergenic |
ATGTCTCGTGCTTGGAAGCC+AGG | 0.453399 | 2.4:+45303629 | MS.gene85295:CDS |
CGCATGTTTGCCCTTCAGAA+TGG | 0.460573 | 2.4:+45304598 | MS.gene85295:CDS |
CAAAATCGCCATTGCTTGCA+CGG | 0.462126 | 2.4:-45304009 | None:intergenic |
TCGGGCCGCCCTCTAGTGCT+TGG | 0.462856 | 2.4:+45304496 | MS.gene85295:CDS |
GTGCTTGGAAGCCAGGCAAA+TGG | 0.468269 | 2.4:+45303636 | MS.gene85295:CDS |
TTCGGCCTCTAGTTTACTGT+CGG | 0.474913 | 2.4:+45304477 | MS.gene85295:CDS |
CAACTCCGAGCAAACTTTGT+CGG | 0.476003 | 2.4:-45304098 | None:intergenic |
GACCTTGACCTACTTTCGGC+TGG | 0.478639 | 2.4:-45303868 | None:intergenic |
GCATGTGTGTCGCAGCCAGC+AGG | 0.478799 | 2.4:-45304280 | None:intergenic |
TCATGGCAGTGAGTTGGTGC+TGG | 0.481293 | 2.4:-45304351 | None:intergenic |
GGTTTGGCGTGGCACAGATA+CGG | 0.485294 | 2.4:-45304230 | None:intergenic |
GTAATTGTAACCCATTTGCC+TGG | 0.487121 | 2.4:-45303647 | None:intergenic |
TGCTTGGAAGCCAGGCAAAT+GGG | 0.489067 | 2.4:+45303637 | MS.gene85295:CDS |
GGATTTATCCAGCCGAAAGT+AGG | 0.490851 | 2.4:+45303860 | MS.gene85295:CDS |
GGCTGCGACACACATGCTGC+TGG | 0.492400 | 2.4:+45304286 | MS.gene85295:CDS |
TGTTACAGGTGTGGTTTACT+CGG | 0.492919 | 2.4:+45304070 | MS.gene85295:CDS |
TTTGAATTAGAAGCTGATGA+TGG | 0.493558 | 2.4:+45304121 | MS.gene85295:CDS |
AGGACAATGGCTCGGAATTG+AGG | 0.495303 | 2.4:+45304566 | MS.gene85295:CDS |
GTTTAGGCTTAAACCTTCCT+CGG | 0.502745 | 2.4:-45303507 | None:intergenic |
GACACACATGCTGCTGGTAC+GGG | 0.506055 | 2.4:+45304292 | MS.gene85295:CDS |
AGCAACTTTGATCCGCATAT+AGG | 0.507322 | 2.4:-45303948 | None:intergenic |
ATGGCTCGGAATTGAGGAAA+AGG | 0.507736 | 2.4:+45304572 | MS.gene85295:CDS |
AGCAGTGCCACCAGCAGCAT+GGG | 0.508785 | 2.4:-45304251 | None:intergenic |
CAGCAGTGCCACCAGCAGCA+TGG | 0.513225 | 2.4:-45304252 | None:intergenic |
CGTGGCACAGATACGGGAAT+GGG | 0.514588 | 2.4:-45304223 | None:intergenic |
CCGAAAGTAGGTCAAGGTCT+AGG | 0.514843 | 2.4:+45303872 | MS.gene85295:CDS |
CTTCTGGCTTCCTCCTCTAC+AGG | 0.515293 | 2.4:+45304451 | MS.gene85295:CDS |
CTTGTTTCATGGCAGTGAGT+TGG | 0.520187 | 2.4:-45304357 | None:intergenic |
TCAGTCACAAACGGAAAAGC+AGG | 0.520274 | 2.4:-45304523 | None:intergenic |
TGGCGTGTCCGTGCAAGCAA+TGG | 0.523337 | 2.4:+45304001 | MS.gene85295:CDS |
GACCAATGAGACAGTGTTCG+AGG | 0.524931 | 2.4:-45303559 | None:intergenic |
ACAAAGTTTGGGACGACACC+AGG | 0.529423 | 2.4:-45303788 | None:intergenic |
GTTTGGCGTGGCACAGATAC+GGG | 0.529796 | 2.4:-45304229 | None:intergenic |
GGAGAACCATTTGCTGCTGA+TGG | 0.530868 | 2.4:+45304619 | MS.gene85295:CDS |
CCACGCCAAACCCATGCTGC+TGG | 0.534679 | 2.4:+45304241 | MS.gene85295:CDS |
TGATCCGCATATAGGAGCTA+TGG | 0.539079 | 2.4:-45303940 | None:intergenic |
GCGAGCGTATGTCTCGTGCT+TGG | 0.539091 | 2.4:+45303621 | MS.gene85295:CDS |
GGCCTGACTTTGTCCGAGGA+AGG | 0.540156 | 2.4:+45303494 | MS.gene85295:CDS |
TCGGCCTCTAGTTTACTGTC+GGG | 0.541033 | 2.4:+45304478 | MS.gene85295:CDS |
ATAACCCCATCAGCAGCAAA+TGG | 0.547713 | 2.4:-45304625 | None:intergenic |
CAAATGGTTCTCCATTCTGA+AGG | 0.549071 | 2.4:-45304609 | None:intergenic |
GAGAACCATTTGCTGCTGAT+GGG | 0.549512 | 2.4:+45304620 | MS.gene85295:CDS |
AAGCCGGTTACAAACAGGAT+TGG | 0.557123 | 2.4:+45304169 | MS.gene85295:CDS |
GTTTGTGACTGAAAATAATG+AGG | 0.557189 | 2.4:+45304534 | MS.gene85295:CDS |
GTACTGCTGCAACCAACCGC+TGG | 0.560356 | 2.4:+45304191 | MS.gene85295:CDS |
CGCCAAACCCATGCTGCTGG+TGG | 0.562675 | 2.4:+45304244 | MS.gene85295:CDS |
GCGTGGCACAGATACGGGAA+TGG | 0.565336 | 2.4:-45304224 | None:intergenic |
CTGTGCCTCTGAAGAAAGCA+TGG | 0.565773 | 2.4:+45303981 | MS.gene85295:CDS |
AAATAATGAGGAAGTGAATG+AGG | 0.570022 | 2.4:+45304546 | MS.gene85295:CDS |
AAGCATACGATCATTAAAAG+AGG | 0.570232 | 2.4:-45304323 | None:intergenic |
ACACGCCATGCTTTCTTCAG+AGG | 0.577762 | 2.4:-45303986 | None:intergenic |
CCAGCAGCATGGGTTTGGCG+TGG | 0.577855 | 2.4:-45304241 | None:intergenic |
GGTTTGCATCAACCTTGTGA+TGG | 0.579487 | 2.4:-45303703 | None:intergenic |
GGCCGAAGTTCCTGTAGAGG+AGG | 0.583182 | 2.4:-45304461 | None:intergenic |
AGAGGCCGAAGTTCCTGTAG+AGG | 0.584110 | 2.4:-45304464 | None:intergenic |
GCAGGTAAACCAAGCACTAG+AGG | 0.584832 | 2.4:-45304505 | None:intergenic |
TTGGGGAGCTGACCTTAAGC+CGG | 0.584885 | 2.4:+45304153 | MS.gene85295:CDS |
GGGATCTTGAAGCCAGCGGT+TGG | 0.585766 | 2.4:-45304203 | None:intergenic |
ACATACCGACAAAGTTTGCT+CGG | 0.586768 | 2.4:+45304093 | MS.gene85295:CDS |
TTCGGCTGGATAAATCCAAA+GGG | 0.589026 | 2.4:-45303854 | None:intergenic |
TTTCGGCTGGATAAATCCAA+AGG | 0.590698 | 2.4:-45303855 | None:intergenic |
TGAAAATTGTCATACAACCA+TGG | 0.596313 | 2.4:-45303743 | None:intergenic |
CCCAATCATCTCAATCTCGA+AGG | 0.597021 | 2.4:+45303473 | MS.gene85295:CDS |
TTCCTCCTCTACAGGAACTT+CGG | 0.598229 | 2.4:+45304459 | MS.gene85295:CDS |
GATTTCTGGATCCAAGTACA+TGG | 0.608248 | 2.4:+45303827 | MS.gene85295:CDS |
TTTGTTCCAATTCCATCACA+AGG | 0.609518 | 2.4:+45303691 | MS.gene85295:CDS |
AGTGAATGAGGACAATGGCT+CGG | 0.613459 | 2.4:+45304558 | MS.gene85295:CDS |
CAGGTAAACCAAGCACTAGA+GGG | 0.614411 | 2.4:-45304504 | None:intergenic |
GGCAGTGAGTTGGTGCTGGA+AGG | 0.619157 | 2.4:-45304347 | None:intergenic |
TTTGCAAGCAGAATTAGAGC+CGG | 0.626746 | 2.4:-45304422 | None:intergenic |
GTCATGGATCGAATCTCACC+TGG | 0.627964 | 2.4:+45303770 | MS.gene85295:CDS |
ATCCAGCCGAAAGTAGGTCA+AGG | 0.636561 | 2.4:+45303866 | MS.gene85295:CDS |
AGGAGCTATGGATTGAGTTG+CGG | 0.639724 | 2.4:-45303928 | None:intergenic |
CGAAGGCCTGACTTTGTCCG+AGG | 0.640019 | 2.4:+45303490 | MS.gene85295:CDS |
AAATGGTTCTCCATTCTGAA+GGG | 0.641917 | 2.4:-45304608 | None:intergenic |
GCGGCCCGACAGTAAACTAG+AGG | 0.652786 | 2.4:-45304482 | None:intergenic |
AGAACCATTTGCTGCTGATG+GGG | 0.656189 | 2.4:+45304621 | MS.gene85295:CDS |
CAATCCATAGCTCCTATATG+CGG | 0.665022 | 2.4:+45303936 | MS.gene85295:CDS |
GATGATGGAATTCGTAATTG+GGG | 0.666972 | 2.4:+45304136 | MS.gene85295:CDS |
GAGGAAGTGAATGAGGACAA+TGG | 0.671664 | 2.4:+45304553 | MS.gene85295:CDS |
GTAAACCAAGCACTAGAGGG+CGG | 0.685839 | 2.4:-45304501 | None:intergenic |
ATGGACCTTCCTCTAAAACA+GGG | 0.693440 | 2.4:-45303724 | None:intergenic |
GAATGGGATCTTGAAGCCAG+CGG | 0.709248 | 2.4:-45304207 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTAAATATGAGAAATT+GGG | + | chr2.4:45304040-45304059 | MS.gene85295:CDS | 10.0% |
!!! | TAATTTTAAATATGAGAAAT+TGG | + | chr2.4:45304039-45304058 | MS.gene85295:CDS | 10.0% |
!! | TCATTATTTTCAGTCACAAA+CGG | - | chr2.4:45304535-45304554 | None:intergenic | 25.0% |
!! | TGACAATTTTCATATTGTCA+TGG | + | chr2.4:45303754-45303773 | MS.gene85295:CDS | 25.0% |
!!! | ACAACTTTTTCATCAAACAA+AGG | - | chr2.4:45304718-45304737 | None:intergenic | 25.0% |
AAATAATGAGGAAGTGAATG+AGG | + | chr2.4:45304546-45304565 | MS.gene85295:CDS | 30.0% | |
AAGCATACGATCATTAAAAG+AGG | - | chr2.4:45304326-45304345 | None:intergenic | 30.0% | |
ATAGGAACAAATGTTAGTCA+TGG | + | chr2.4:45304661-45304680 | MS.gene85295:intron | 30.0% | |
GTTATGGGAAACAATGTAAT+AGG | + | chr2.4:45304643-45304662 | MS.gene85295:intron | 30.0% | |
GTTTGTGACTGAAAATAATG+AGG | + | chr2.4:45304534-45304553 | MS.gene85295:CDS | 30.0% | |
TAGGAACAAATGTTAGTCAT+GGG | + | chr2.4:45304662-45304681 | MS.gene85295:intron | 30.0% | |
TGAAAATTGTCATACAACCA+TGG | - | chr2.4:45303746-45303765 | None:intergenic | 30.0% | |
TTTGAATTAGAAGCTGATGA+TGG | + | chr2.4:45304121-45304140 | MS.gene85295:CDS | 30.0% | |
! | AGCAATAACATCTTGTTTCA+TGG | - | chr2.4:45304371-45304390 | None:intergenic | 30.0% |
!! | TGATGATGGAATTCGTAATT+GGG | + | chr2.4:45304135-45304154 | MS.gene85295:CDS | 30.0% |
!!! | AATTGGGTGTTTTTTGTTAC+AGG | + | chr2.4:45304056-45304075 | MS.gene85295:CDS | 30.0% |
AAATGGTTCTCCATTCTGAA+GGG | - | chr2.4:45304611-45304630 | None:intergenic | 35.0% | |
AATGCAGCGTATGCTAAAAA+AGG | + | chr2.4:45304397-45304416 | MS.gene85295:CDS | 35.0% | |
AGGAACAAATGTTAGTCATG+GGG | + | chr2.4:45304663-45304682 | MS.gene85295:intron | 35.0% | |
CAGAAATCGATATGGTTTAG+AGG | - | chr2.4:45303815-45303834 | None:intergenic | 35.0% | |
GGTTTAGAGGAACAAAGTTT+GGG | - | chr2.4:45303802-45303821 | None:intergenic | 35.0% | |
TGGTTTAGAGGAACAAAGTT+TGG | - | chr2.4:45303803-45303822 | None:intergenic | 35.0% | |
TTTGTTCCAATTCCATCACA+AGG | + | chr2.4:45303691-45303710 | MS.gene85295:CDS | 35.0% | |
! | TTTAGCATACGCTGCATTTT+GGG | - | chr2.4:45304395-45304414 | None:intergenic | 35.0% |
! | TTTTAGCATACGCTGCATTT+TGG | - | chr2.4:45304396-45304415 | None:intergenic | 35.0% |
!! | CTCTAAACCATATCGATTTC+TGG | + | chr2.4:45303813-45303832 | MS.gene85295:CDS | 35.0% |
!! | CTGATGATGGAATTCGTAAT+TGG | + | chr2.4:45304134-45304153 | MS.gene85295:CDS | 35.0% |
!! | GATGATGGAATTCGTAATTG+GGG | + | chr2.4:45304136-45304155 | MS.gene85295:CDS | 35.0% |
AACAAATGTTAGTCATGGGG+AGG | + | chr2.4:45304666-45304685 | MS.gene85295:intron | 40.0% | |
AGCAACTTTGATCCGCATAT+AGG | - | chr2.4:45303951-45303970 | None:intergenic | 40.0% | |
CAAATGGTTCTCCATTCTGA+AGG | - | chr2.4:45304612-45304631 | None:intergenic | 40.0% | |
CAATCCATAGCTCCTATATG+CGG | + | chr2.4:45303936-45303955 | MS.gene85295:CDS | 40.0% | |
CCTTCGAGATTGAGATGATT+GGG | - | chr2.4:45303476-45303495 | None:intergenic | 40.0% | |
CTTGGATCCAGAAATCGATA+TGG | - | chr2.4:45303823-45303842 | None:intergenic | 40.0% | |
GTAATTGTAACCCATTTGCC+TGG | - | chr2.4:45303650-45303669 | None:intergenic | 40.0% | |
GTACCAATCCTGTTTGTAAC+CGG | - | chr2.4:45304175-45304194 | None:intergenic | 40.0% | |
GTTTAGGCTTAAACCTTCCT+CGG | - | chr2.4:45303510-45303529 | None:intergenic | 40.0% | |
TGCTTGCAAAGTTCAACTTC+TGG | + | chr2.4:45304435-45304454 | MS.gene85295:CDS | 40.0% | |
TGTTACAGGTGTGGTTTACT+CGG | + | chr2.4:45304070-45304089 | MS.gene85295:CDS | 40.0% | |
TTCGGCTGGATAAATCCAAA+GGG | - | chr2.4:45303857-45303876 | None:intergenic | 40.0% | |
TTTCGGCTGGATAAATCCAA+AGG | - | chr2.4:45303858-45303877 | None:intergenic | 40.0% | |
TTTGCAAGCAGAATTAGAGC+CGG | - | chr2.4:45304425-45304444 | None:intergenic | 40.0% | |
! | ACATACCGACAAAGTTTGCT+CGG | + | chr2.4:45304093-45304112 | MS.gene85295:CDS | 40.0% |
! | CATCAACCTTGTGATGGAAT+TGG | - | chr2.4:45303700-45303719 | None:intergenic | 40.0% |
! | GATTTCTGGATCCAAGTACA+TGG | + | chr2.4:45303827-45303846 | MS.gene85295:CDS | 40.0% |
! | GCGGTCATCATAAGCTTTTA+GGG | - | chr2.4:45303912-45303931 | None:intergenic | 40.0% |
! | GCGTATGCTAAAAAAGGTAC+CGG | + | chr2.4:45304403-45304422 | MS.gene85295:CDS | 40.0% |
! | TGCGGTCATCATAAGCTTTT+AGG | - | chr2.4:45303913-45303932 | None:intergenic | 40.0% |
!! | ATGGACCTTCCTCTAAAACA+GGG | - | chr2.4:45303727-45303746 | None:intergenic | 40.0% |
!! | TGATGCAAACCCTGTTTTAG+AGG | + | chr2.4:45303715-45303734 | MS.gene85295:CDS | 40.0% |
!!! | GGTGTTTTTTGTTACAGGTG+TGG | + | chr2.4:45304061-45304080 | MS.gene85295:CDS | 40.0% |
AAGCCGGTTACAAACAGGAT+TGG | + | chr2.4:45304169-45304188 | MS.gene85295:CDS | 45.0% | |
ACCTTAAGCCGGTTACAAAC+AGG | + | chr2.4:45304164-45304183 | MS.gene85295:CDS | 45.0% | |
AGACATACGCTCGCTGAAAT+AGG | - | chr2.4:45303615-45303634 | None:intergenic | 45.0% | |
AGTGAATGAGGACAATGGCT+CGG | + | chr2.4:45304558-45304577 | MS.gene85295:CDS | 45.0% | |
ATAACCCCATCAGCAGCAAA+TGG | - | chr2.4:45304628-45304647 | None:intergenic | 45.0% | |
CAAAATCGCCATTGCTTGCA+CGG | - | chr2.4:45304012-45304031 | None:intergenic | 45.0% | |
CAACTCCGAGCAAACTTTGT+CGG | - | chr2.4:45304101-45304120 | None:intergenic | 45.0% | |
CAAGGTCTAGGCAGTTTCTT+AGG | + | chr2.4:45303884-45303903 | MS.gene85295:CDS | 45.0% | |
CAGGTAAACCAAGCACTAGA+GGG | - | chr2.4:45304507-45304526 | None:intergenic | 45.0% | |
CAGGTTCAGACTCTAGGTTT+AGG | - | chr2.4:45303526-45303545 | None:intergenic | 45.0% | |
CCCAATCATCTCAATCTCGA+AGG | + | chr2.4:45303473-45303492 | MS.gene85295:CDS | 45.0% | |
CCTAGACCTTGACCTACTTT+CGG | - | chr2.4:45303875-45303894 | None:intergenic | 45.0% | |
CTTGTTTCATGGCAGTGAGT+TGG | - | chr2.4:45304360-45304379 | None:intergenic | 45.0% | |
GAGGAAGTGAATGAGGACAA+TGG | + | chr2.4:45304553-45304572 | MS.gene85295:CDS | 45.0% | |
GCCTTCGAGATTGAGATGAT+TGG | - | chr2.4:45303477-45303496 | None:intergenic | 45.0% | |
GGATTTATCCAGCCGAAAGT+AGG | + | chr2.4:45303860-45303879 | MS.gene85295:CDS | 45.0% | |
GGTTTGCATCAACCTTGTGA+TGG | - | chr2.4:45303706-45303725 | None:intergenic | 45.0% | |
TCAGTCACAAACGGAAAAGC+AGG | - | chr2.4:45304526-45304545 | None:intergenic | 45.0% | |
TGATCCGCATATAGGAGCTA+TGG | - | chr2.4:45303943-45303962 | None:intergenic | 45.0% | |
TTCCTCCTCTACAGGAACTT+CGG | + | chr2.4:45304459-45304478 | MS.gene85295:CDS | 45.0% | |
TTTGCTGCTGATGGGGTTAT+GGG | + | chr2.4:45304628-45304647 | MS.gene85295:CDS | 45.0% | |
! | AGAACCATTTGCTGCTGATG+GGG | + | chr2.4:45304621-45304640 | MS.gene85295:CDS | 45.0% |
! | AGGAGCTATGGATTGAGTTG+CGG | - | chr2.4:45303931-45303950 | None:intergenic | 45.0% |
! | ATGGCTCGGAATTGAGGAAA+AGG | + | chr2.4:45304572-45304591 | MS.gene85295:CDS | 45.0% |
! | ATTTGCTGCTGATGGGGTTA+TGG | + | chr2.4:45304627-45304646 | MS.gene85295:CDS | 45.0% |
! | GAGAACCATTTGCTGCTGAT+GGG | + | chr2.4:45304620-45304639 | MS.gene85295:CDS | 45.0% |
! | TCCTGTTTGTAACCGGCTTA+AGG | - | chr2.4:45304168-45304187 | None:intergenic | 45.0% |
! | TTCGGCCTCTAGTTTACTGT+CGG | + | chr2.4:45304477-45304496 | MS.gene85295:CDS | 45.0% |
!! | CAGTTTCAGGTTCAGACTCT+AGG | - | chr2.4:45303532-45303551 | None:intergenic | 45.0% |
!! | CATGGACCTTCCTCTAAAAC+AGG | - | chr2.4:45303728-45303747 | None:intergenic | 45.0% |
!!! | CTGTTTTAGAGGAAGGTCCA+TGG | + | chr2.4:45303726-45303745 | MS.gene85295:CDS | 45.0% |
!!! | GCAAACCCTGTTTTAGAGGA+AGG | + | chr2.4:45303719-45303738 | MS.gene85295:CDS | 45.0% |
AACCTTCCTCGGACAAAGTC+AGG | - | chr2.4:45303499-45303518 | None:intergenic | 50.0% | |
ACACGCCATGCTTTCTTCAG+AGG | - | chr2.4:45303989-45304008 | None:intergenic | 50.0% | |
ATCCAGCCGAAAGTAGGTCA+AGG | + | chr2.4:45303866-45303885 | MS.gene85295:CDS | 50.0% | |
CAAAGGGCAGACCATGTACT+TGG | - | chr2.4:45303841-45303860 | None:intergenic | 50.0% | |
CAAGTACATGGTCTGCCCTT+TGG | + | chr2.4:45303839-45303858 | MS.gene85295:CDS | 50.0% | |
CCGAAAGTAGGTCAAGGTCT+AGG | + | chr2.4:45303872-45303891 | MS.gene85295:CDS | 50.0% | |
CGCATGTTTGCCCTTCAGAA+TGG | + | chr2.4:45304598-45304617 | MS.gene85295:CDS | 50.0% | |
GAATGGGATCTTGAAGCCAG+CGG | - | chr2.4:45304210-45304229 | None:intergenic | 50.0% | |
GACCAATGAGACAGTGTTCG+AGG | - | chr2.4:45303562-45303581 | None:intergenic | 50.0% | |
GCAGGTAAACCAAGCACTAG+AGG | - | chr2.4:45304508-45304527 | None:intergenic | 50.0% | |
GCTCGCTGAAATAGGCAAAC+TGG | - | chr2.4:45303607-45303626 | None:intergenic | 50.0% | |
GTAAACCAAGCACTAGAGGG+CGG | - | chr2.4:45304504-45304523 | None:intergenic | 50.0% | |
GTCATGGATCGAATCTCACC+TGG | + | chr2.4:45303770-45303789 | MS.gene85295:CDS | 50.0% | |
GTCCTCGAACACTGTCTCAT+TGG | + | chr2.4:45303557-45303576 | MS.gene85295:CDS | 50.0% | |
TGCTTGGAAGCCAGGCAAAT+GGG | + | chr2.4:45303637-45303656 | MS.gene85295:CDS | 50.0% | |
! | ACAAAGTTTGGGACGACACC+AGG | - | chr2.4:45303791-45303810 | None:intergenic | 50.0% |
! | AGGACAATGGCTCGGAATTG+AGG | + | chr2.4:45304566-45304585 | MS.gene85295:CDS | 50.0% |
! | CTGTGCCTCTGAAGAAAGCA+TGG | + | chr2.4:45303981-45304000 | MS.gene85295:CDS | 50.0% |
! | GGAGAACCATTTGCTGCTGA+TGG | + | chr2.4:45304619-45304638 | MS.gene85295:CDS | 50.0% |
! | TCGGCCTCTAGTTTACTGTC+GGG | + | chr2.4:45304478-45304497 | MS.gene85295:CDS | 50.0% |
AGAGGCCGAAGTTCCTGTAG+AGG | - | chr2.4:45304467-45304486 | None:intergenic | 55.0% | |
ATGTCTCGTGCTTGGAAGCC+AGG | + | chr2.4:45303629-45303648 | MS.gene85295:CDS | 55.0% | |
CGACACACATGCTGCTGGTA+CGG | + | chr2.4:45304291-45304310 | MS.gene85295:CDS | 55.0% | |
CGTGGCACAGATACGGGAAT+GGG | - | chr2.4:45304226-45304245 | None:intergenic | 55.0% | |
GACACACATGCTGCTGGTAC+GGG | + | chr2.4:45304292-45304311 | MS.gene85295:CDS | 55.0% | |
GACCTTGACCTACTTTCGGC+TGG | - | chr2.4:45303871-45303890 | None:intergenic | 55.0% | |
GGTTTGGCGTGGCACAGATA+CGG | - | chr2.4:45304233-45304252 | None:intergenic | 55.0% | |
GTGCTTGGAAGCCAGGCAAA+TGG | + | chr2.4:45303636-45303655 | MS.gene85295:CDS | 55.0% | |
GTTTGGCGTGGCACAGATAC+GGG | - | chr2.4:45304232-45304251 | None:intergenic | 55.0% | |
TCGAGGACAGCAGCAGTTTC+AGG | - | chr2.4:45303545-45303564 | None:intergenic | 55.0% | |
TTGGGGAGCTGACCTTAAGC+CGG | + | chr2.4:45304153-45304172 | MS.gene85295:CDS | 55.0% | |
!! | CTTCTGGCTTCCTCCTCTAC+AGG | + | chr2.4:45304451-45304470 | MS.gene85295:CDS | 55.0% |
!! | TCATGGCAGTGAGTTGGTGC+TGG | - | chr2.4:45304354-45304373 | None:intergenic | 55.0% |
AGCAGTGCCACCAGCAGCAT+GGG | - | chr2.4:45304254-45304273 | None:intergenic | 60.0% | |
CGAAGGCCTGACTTTGTCCG+AGG | + | chr2.4:45303490-45303509 | MS.gene85295:CDS | 60.0% | |
GCGAGCGTATGTCTCGTGCT+TGG | + | chr2.4:45303621-45303640 | MS.gene85295:CDS | 60.0% | |
GCGGCCCGACAGTAAACTAG+AGG | - | chr2.4:45304485-45304504 | None:intergenic | 60.0% | |
GCGTGGCACAGATACGGGAA+TGG | - | chr2.4:45304227-45304246 | None:intergenic | 60.0% | |
GGCCGAAGTTCCTGTAGAGG+AGG | - | chr2.4:45304464-45304483 | None:intergenic | 60.0% | |
GGCCTGACTTTGTCCGAGGA+AGG | + | chr2.4:45303494-45303513 | MS.gene85295:CDS | 60.0% | |
GGGATCTTGAAGCCAGCGGT+TGG | - | chr2.4:45304206-45304225 | None:intergenic | 60.0% | |
GTACTGCTGCAACCAACCGC+TGG | + | chr2.4:45304191-45304210 | MS.gene85295:CDS | 60.0% | |
TGCCACCAGCAGCATGGGTT+TGG | - | chr2.4:45304249-45304268 | None:intergenic | 60.0% | |
TGGCGTGTCCGTGCAAGCAA+TGG | + | chr2.4:45304001-45304020 | MS.gene85295:CDS | 60.0% | |
!! | GGCAGTGAGTTGGTGCTGGA+AGG | - | chr2.4:45304350-45304369 | None:intergenic | 60.0% |
CAGCAGTGCCACCAGCAGCA+TGG | - | chr2.4:45304255-45304274 | None:intergenic | 65.0% | |
CCACGCCAAACCCATGCTGC+TGG | + | chr2.4:45304241-45304260 | MS.gene85295:CDS | 65.0% | |
CCAGCAGCATGGGTTTGGCG+TGG | - | chr2.4:45304244-45304263 | None:intergenic | 65.0% | |
CGCCAAACCCATGCTGCTGG+TGG | + | chr2.4:45304244-45304263 | MS.gene85295:CDS | 65.0% | |
GCATGTGTGTCGCAGCCAGC+AGG | - | chr2.4:45304283-45304302 | None:intergenic | 65.0% | |
GGCACTGCTGCTGTTCCTGC+TGG | + | chr2.4:45304265-45304284 | MS.gene85295:CDS | 65.0% | |
GGCTGCGACACACATGCTGC+TGG | + | chr2.4:45304286-45304305 | MS.gene85295:CDS | 65.0% | |
TCGGGCCGCCCTCTAGTGCT+TGG | + | chr2.4:45304496-45304515 | MS.gene85295:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 45303467 | 45304739 | 45303467 | ID=MS.gene85295 |
chr2.4 | mRNA | 45303467 | 45304739 | 45303467 | ID=MS.gene85295.t1;Parent=MS.gene85295 |
chr2.4 | exon | 45303467 | 45304657 | 45303467 | ID=MS.gene85295.t1.exon1;Parent=MS.gene85295.t1 |
chr2.4 | CDS | 45303467 | 45304657 | 45303467 | ID=cds.MS.gene85295.t1;Parent=MS.gene85295.t1 |
chr2.4 | exon | 45304734 | 45304739 | 45304734 | ID=MS.gene85295.t1.exon2;Parent=MS.gene85295.t1 |
chr2.4 | CDS | 45304734 | 45304739 | 45304734 | ID=cds.MS.gene85295.t1;Parent=MS.gene85295.t1 |
Gene Sequence |
Protein sequence |