AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85295


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85295.t1 MTR_3g053920 59.714 350 70 4 1 349 1 280 2.07e-132 381
MS.gene85295.t1 MTR_2g061500 89.922 129 13 0 1 129 1 129 1.05e-81 246
MS.gene85295.t1 MTR_4g103530 79.000 100 19 1 55 154 1 98 7.52e-52 172
MS.gene85295.t1 MTR_7g011710 65.909 88 30 0 55 142 1 88 9.74e-36 129
MS.gene85295.t1 MTR_6g033215 31.214 173 117 1 29 199 122 294 1.35e-29 116
MS.gene85295.t1 MTR_0010s0370 35.955 178 102 4 8 177 4 177 1.45e-29 113
MS.gene85295.t1 MTR_0010s0350 35.955 178 102 4 8 177 4 177 1.45e-29 113
MS.gene85295.t1 MTR_8g463110 60.748 107 40 1 292 396 1 107 4.03e-25 107
MS.gene85295.t1 MTR_1g036720 32.110 109 72 1 7 113 3 111 5.30e-13 65.5
MS.gene85295.t1 MTR_7g089990 34.259 108 67 2 106 209 86 193 2.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85295.t1 AT2G17920 27.230 213 147 5 8 215 9 218 3.46e-19 87.8
MS.gene85295.t1 AT3G57587 29.787 141 95 2 77 215 80 218 2.10e-17 83.6
MS.gene85295.t1 AT2G41590 29.697 165 101 5 61 215 59 218 1.24e-16 81.3
MS.gene85295.t1 AT5G36228 25.773 194 138 4 36 226 39 229 3.67e-15 76.6
MS.gene85295.t1 AT2G13450 26.047 215 147 6 8 215 9 218 4.29e-15 76.6
MS.gene85295.t1 AT3G31430 25.943 212 149 4 8 215 104 311 7.81e-15 75.5
MS.gene85295.t1 AT3G47920 28.369 141 97 2 77 215 9 147 4.70e-14 72.8

Find 115 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAAACCATATCGATTTC+TGG 0.139789 2.4:+45303813 MS.gene85295:CDS
CTGATGATGGAATTCGTAAT+TGG 0.233983 2.4:+45304134 MS.gene85295:CDS
TCGAGGACAGCAGCAGTTTC+AGG 0.251040 2.4:-45303542 None:intergenic
AGACATACGCTCGCTGAAAT+AGG 0.266771 2.4:-45303612 None:intergenic
CAAGGTCTAGGCAGTTTCTT+AGG 0.304807 2.4:+45303884 MS.gene85295:CDS
TGGTTTAGAGGAACAAAGTT+TGG 0.317569 2.4:-45303800 None:intergenic
ATTTGCTGCTGATGGGGTTA+TGG 0.324485 2.4:+45304627 MS.gene85295:CDS
CATCAACCTTGTGATGGAAT+TGG 0.340552 2.4:-45303697 None:intergenic
GGCACTGCTGCTGTTCCTGC+TGG 0.352610 2.4:+45304265 MS.gene85295:CDS
TGCTTGCAAAGTTCAACTTC+TGG 0.354310 2.4:+45304435 MS.gene85295:CDS
CATGGACCTTCCTCTAAAAC+AGG 0.364428 2.4:-45303725 None:intergenic
CAAGTACATGGTCTGCCCTT+TGG 0.370281 2.4:+45303839 MS.gene85295:CDS
TCCTGTTTGTAACCGGCTTA+AGG 0.374545 2.4:-45304165 None:intergenic
AGCAATAACATCTTGTTTCA+TGG 0.382000 2.4:-45304368 None:intergenic
CTTGGATCCAGAAATCGATA+TGG 0.387027 2.4:-45303820 None:intergenic
GCCTTCGAGATTGAGATGAT+TGG 0.391473 2.4:-45303474 None:intergenic
TGCCACCAGCAGCATGGGTT+TGG 0.392058 2.4:-45304246 None:intergenic
TTTGCTGCTGATGGGGTTAT+GGG 0.393203 2.4:+45304628 MS.gene85295:CDS
CAGGTTCAGACTCTAGGTTT+AGG 0.395705 2.4:-45303523 None:intergenic
CCTAGACCTTGACCTACTTT+CGG 0.406674 2.4:-45303872 None:intergenic
GGTTTAGAGGAACAAAGTTT+GGG 0.408490 2.4:-45303799 None:intergenic
GCTCGCTGAAATAGGCAAAC+TGG 0.409343 2.4:-45303604 None:intergenic
GTACCAATCCTGTTTGTAAC+CGG 0.420302 2.4:-45304172 None:intergenic
GTCCTCGAACACTGTCTCAT+TGG 0.423724 2.4:+45303557 MS.gene85295:CDS
CGACACACATGCTGCTGGTA+CGG 0.425647 2.4:+45304291 MS.gene85295:CDS
CCTTCGAGATTGAGATGATT+GGG 0.431556 2.4:-45303473 None:intergenic
AACCTTCCTCGGACAAAGTC+AGG 0.432512 2.4:-45303496 None:intergenic
TGATGATGGAATTCGTAATT+GGG 0.433240 2.4:+45304135 MS.gene85295:CDS
ACCTTAAGCCGGTTACAAAC+AGG 0.433910 2.4:+45304164 MS.gene85295:CDS
CAGAAATCGATATGGTTTAG+AGG 0.436007 2.4:-45303812 None:intergenic
CAAAGGGCAGACCATGTACT+TGG 0.443471 2.4:-45303838 None:intergenic
CAGTTTCAGGTTCAGACTCT+AGG 0.448348 2.4:-45303529 None:intergenic
ATGTCTCGTGCTTGGAAGCC+AGG 0.453399 2.4:+45303629 MS.gene85295:CDS
CGCATGTTTGCCCTTCAGAA+TGG 0.460573 2.4:+45304598 MS.gene85295:CDS
CAAAATCGCCATTGCTTGCA+CGG 0.462126 2.4:-45304009 None:intergenic
TCGGGCCGCCCTCTAGTGCT+TGG 0.462856 2.4:+45304496 MS.gene85295:CDS
GTGCTTGGAAGCCAGGCAAA+TGG 0.468269 2.4:+45303636 MS.gene85295:CDS
TTCGGCCTCTAGTTTACTGT+CGG 0.474913 2.4:+45304477 MS.gene85295:CDS
CAACTCCGAGCAAACTTTGT+CGG 0.476003 2.4:-45304098 None:intergenic
GACCTTGACCTACTTTCGGC+TGG 0.478639 2.4:-45303868 None:intergenic
GCATGTGTGTCGCAGCCAGC+AGG 0.478799 2.4:-45304280 None:intergenic
TCATGGCAGTGAGTTGGTGC+TGG 0.481293 2.4:-45304351 None:intergenic
GGTTTGGCGTGGCACAGATA+CGG 0.485294 2.4:-45304230 None:intergenic
GTAATTGTAACCCATTTGCC+TGG 0.487121 2.4:-45303647 None:intergenic
TGCTTGGAAGCCAGGCAAAT+GGG 0.489067 2.4:+45303637 MS.gene85295:CDS
GGATTTATCCAGCCGAAAGT+AGG 0.490851 2.4:+45303860 MS.gene85295:CDS
GGCTGCGACACACATGCTGC+TGG 0.492400 2.4:+45304286 MS.gene85295:CDS
TGTTACAGGTGTGGTTTACT+CGG 0.492919 2.4:+45304070 MS.gene85295:CDS
TTTGAATTAGAAGCTGATGA+TGG 0.493558 2.4:+45304121 MS.gene85295:CDS
AGGACAATGGCTCGGAATTG+AGG 0.495303 2.4:+45304566 MS.gene85295:CDS
GTTTAGGCTTAAACCTTCCT+CGG 0.502745 2.4:-45303507 None:intergenic
GACACACATGCTGCTGGTAC+GGG 0.506055 2.4:+45304292 MS.gene85295:CDS
AGCAACTTTGATCCGCATAT+AGG 0.507322 2.4:-45303948 None:intergenic
ATGGCTCGGAATTGAGGAAA+AGG 0.507736 2.4:+45304572 MS.gene85295:CDS
AGCAGTGCCACCAGCAGCAT+GGG 0.508785 2.4:-45304251 None:intergenic
CAGCAGTGCCACCAGCAGCA+TGG 0.513225 2.4:-45304252 None:intergenic
CGTGGCACAGATACGGGAAT+GGG 0.514588 2.4:-45304223 None:intergenic
CCGAAAGTAGGTCAAGGTCT+AGG 0.514843 2.4:+45303872 MS.gene85295:CDS
CTTCTGGCTTCCTCCTCTAC+AGG 0.515293 2.4:+45304451 MS.gene85295:CDS
CTTGTTTCATGGCAGTGAGT+TGG 0.520187 2.4:-45304357 None:intergenic
TCAGTCACAAACGGAAAAGC+AGG 0.520274 2.4:-45304523 None:intergenic
TGGCGTGTCCGTGCAAGCAA+TGG 0.523337 2.4:+45304001 MS.gene85295:CDS
GACCAATGAGACAGTGTTCG+AGG 0.524931 2.4:-45303559 None:intergenic
ACAAAGTTTGGGACGACACC+AGG 0.529423 2.4:-45303788 None:intergenic
GTTTGGCGTGGCACAGATAC+GGG 0.529796 2.4:-45304229 None:intergenic
GGAGAACCATTTGCTGCTGA+TGG 0.530868 2.4:+45304619 MS.gene85295:CDS
CCACGCCAAACCCATGCTGC+TGG 0.534679 2.4:+45304241 MS.gene85295:CDS
TGATCCGCATATAGGAGCTA+TGG 0.539079 2.4:-45303940 None:intergenic
GCGAGCGTATGTCTCGTGCT+TGG 0.539091 2.4:+45303621 MS.gene85295:CDS
GGCCTGACTTTGTCCGAGGA+AGG 0.540156 2.4:+45303494 MS.gene85295:CDS
TCGGCCTCTAGTTTACTGTC+GGG 0.541033 2.4:+45304478 MS.gene85295:CDS
ATAACCCCATCAGCAGCAAA+TGG 0.547713 2.4:-45304625 None:intergenic
CAAATGGTTCTCCATTCTGA+AGG 0.549071 2.4:-45304609 None:intergenic
GAGAACCATTTGCTGCTGAT+GGG 0.549512 2.4:+45304620 MS.gene85295:CDS
AAGCCGGTTACAAACAGGAT+TGG 0.557123 2.4:+45304169 MS.gene85295:CDS
GTTTGTGACTGAAAATAATG+AGG 0.557189 2.4:+45304534 MS.gene85295:CDS
GTACTGCTGCAACCAACCGC+TGG 0.560356 2.4:+45304191 MS.gene85295:CDS
CGCCAAACCCATGCTGCTGG+TGG 0.562675 2.4:+45304244 MS.gene85295:CDS
GCGTGGCACAGATACGGGAA+TGG 0.565336 2.4:-45304224 None:intergenic
CTGTGCCTCTGAAGAAAGCA+TGG 0.565773 2.4:+45303981 MS.gene85295:CDS
AAATAATGAGGAAGTGAATG+AGG 0.570022 2.4:+45304546 MS.gene85295:CDS
AAGCATACGATCATTAAAAG+AGG 0.570232 2.4:-45304323 None:intergenic
ACACGCCATGCTTTCTTCAG+AGG 0.577762 2.4:-45303986 None:intergenic
CCAGCAGCATGGGTTTGGCG+TGG 0.577855 2.4:-45304241 None:intergenic
GGTTTGCATCAACCTTGTGA+TGG 0.579487 2.4:-45303703 None:intergenic
GGCCGAAGTTCCTGTAGAGG+AGG 0.583182 2.4:-45304461 None:intergenic
AGAGGCCGAAGTTCCTGTAG+AGG 0.584110 2.4:-45304464 None:intergenic
GCAGGTAAACCAAGCACTAG+AGG 0.584832 2.4:-45304505 None:intergenic
TTGGGGAGCTGACCTTAAGC+CGG 0.584885 2.4:+45304153 MS.gene85295:CDS
GGGATCTTGAAGCCAGCGGT+TGG 0.585766 2.4:-45304203 None:intergenic
ACATACCGACAAAGTTTGCT+CGG 0.586768 2.4:+45304093 MS.gene85295:CDS
TTCGGCTGGATAAATCCAAA+GGG 0.589026 2.4:-45303854 None:intergenic
TTTCGGCTGGATAAATCCAA+AGG 0.590698 2.4:-45303855 None:intergenic
TGAAAATTGTCATACAACCA+TGG 0.596313 2.4:-45303743 None:intergenic
CCCAATCATCTCAATCTCGA+AGG 0.597021 2.4:+45303473 MS.gene85295:CDS
TTCCTCCTCTACAGGAACTT+CGG 0.598229 2.4:+45304459 MS.gene85295:CDS
GATTTCTGGATCCAAGTACA+TGG 0.608248 2.4:+45303827 MS.gene85295:CDS
TTTGTTCCAATTCCATCACA+AGG 0.609518 2.4:+45303691 MS.gene85295:CDS
AGTGAATGAGGACAATGGCT+CGG 0.613459 2.4:+45304558 MS.gene85295:CDS
CAGGTAAACCAAGCACTAGA+GGG 0.614411 2.4:-45304504 None:intergenic
GGCAGTGAGTTGGTGCTGGA+AGG 0.619157 2.4:-45304347 None:intergenic
TTTGCAAGCAGAATTAGAGC+CGG 0.626746 2.4:-45304422 None:intergenic
GTCATGGATCGAATCTCACC+TGG 0.627964 2.4:+45303770 MS.gene85295:CDS
ATCCAGCCGAAAGTAGGTCA+AGG 0.636561 2.4:+45303866 MS.gene85295:CDS
AGGAGCTATGGATTGAGTTG+CGG 0.639724 2.4:-45303928 None:intergenic
CGAAGGCCTGACTTTGTCCG+AGG 0.640019 2.4:+45303490 MS.gene85295:CDS
AAATGGTTCTCCATTCTGAA+GGG 0.641917 2.4:-45304608 None:intergenic
GCGGCCCGACAGTAAACTAG+AGG 0.652786 2.4:-45304482 None:intergenic
AGAACCATTTGCTGCTGATG+GGG 0.656189 2.4:+45304621 MS.gene85295:CDS
CAATCCATAGCTCCTATATG+CGG 0.665022 2.4:+45303936 MS.gene85295:CDS
GATGATGGAATTCGTAATTG+GGG 0.666972 2.4:+45304136 MS.gene85295:CDS
GAGGAAGTGAATGAGGACAA+TGG 0.671664 2.4:+45304553 MS.gene85295:CDS
GTAAACCAAGCACTAGAGGG+CGG 0.685839 2.4:-45304501 None:intergenic
ATGGACCTTCCTCTAAAACA+GGG 0.693440 2.4:-45303724 None:intergenic
GAATGGGATCTTGAAGCCAG+CGG 0.709248 2.4:-45304207 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAATATGAGAAATT+GGG + chr2.4:45304040-45304059 MS.gene85295:CDS 10.0%
!!! TAATTTTAAATATGAGAAAT+TGG + chr2.4:45304039-45304058 MS.gene85295:CDS 10.0%
!! TCATTATTTTCAGTCACAAA+CGG - chr2.4:45304535-45304554 None:intergenic 25.0%
!! TGACAATTTTCATATTGTCA+TGG + chr2.4:45303754-45303773 MS.gene85295:CDS 25.0%
!!! ACAACTTTTTCATCAAACAA+AGG - chr2.4:45304718-45304737 None:intergenic 25.0%
AAATAATGAGGAAGTGAATG+AGG + chr2.4:45304546-45304565 MS.gene85295:CDS 30.0%
AAGCATACGATCATTAAAAG+AGG - chr2.4:45304326-45304345 None:intergenic 30.0%
ATAGGAACAAATGTTAGTCA+TGG + chr2.4:45304661-45304680 MS.gene85295:intron 30.0%
GTTATGGGAAACAATGTAAT+AGG + chr2.4:45304643-45304662 MS.gene85295:intron 30.0%
GTTTGTGACTGAAAATAATG+AGG + chr2.4:45304534-45304553 MS.gene85295:CDS 30.0%
TAGGAACAAATGTTAGTCAT+GGG + chr2.4:45304662-45304681 MS.gene85295:intron 30.0%
TGAAAATTGTCATACAACCA+TGG - chr2.4:45303746-45303765 None:intergenic 30.0%
TTTGAATTAGAAGCTGATGA+TGG + chr2.4:45304121-45304140 MS.gene85295:CDS 30.0%
! AGCAATAACATCTTGTTTCA+TGG - chr2.4:45304371-45304390 None:intergenic 30.0%
!! TGATGATGGAATTCGTAATT+GGG + chr2.4:45304135-45304154 MS.gene85295:CDS 30.0%
!!! AATTGGGTGTTTTTTGTTAC+AGG + chr2.4:45304056-45304075 MS.gene85295:CDS 30.0%
AAATGGTTCTCCATTCTGAA+GGG - chr2.4:45304611-45304630 None:intergenic 35.0%
AATGCAGCGTATGCTAAAAA+AGG + chr2.4:45304397-45304416 MS.gene85295:CDS 35.0%
AGGAACAAATGTTAGTCATG+GGG + chr2.4:45304663-45304682 MS.gene85295:intron 35.0%
CAGAAATCGATATGGTTTAG+AGG - chr2.4:45303815-45303834 None:intergenic 35.0%
GGTTTAGAGGAACAAAGTTT+GGG - chr2.4:45303802-45303821 None:intergenic 35.0%
TGGTTTAGAGGAACAAAGTT+TGG - chr2.4:45303803-45303822 None:intergenic 35.0%
TTTGTTCCAATTCCATCACA+AGG + chr2.4:45303691-45303710 MS.gene85295:CDS 35.0%
! TTTAGCATACGCTGCATTTT+GGG - chr2.4:45304395-45304414 None:intergenic 35.0%
! TTTTAGCATACGCTGCATTT+TGG - chr2.4:45304396-45304415 None:intergenic 35.0%
!! CTCTAAACCATATCGATTTC+TGG + chr2.4:45303813-45303832 MS.gene85295:CDS 35.0%
!! CTGATGATGGAATTCGTAAT+TGG + chr2.4:45304134-45304153 MS.gene85295:CDS 35.0%
!! GATGATGGAATTCGTAATTG+GGG + chr2.4:45304136-45304155 MS.gene85295:CDS 35.0%
AACAAATGTTAGTCATGGGG+AGG + chr2.4:45304666-45304685 MS.gene85295:intron 40.0%
AGCAACTTTGATCCGCATAT+AGG - chr2.4:45303951-45303970 None:intergenic 40.0%
CAAATGGTTCTCCATTCTGA+AGG - chr2.4:45304612-45304631 None:intergenic 40.0%
CAATCCATAGCTCCTATATG+CGG + chr2.4:45303936-45303955 MS.gene85295:CDS 40.0%
CCTTCGAGATTGAGATGATT+GGG - chr2.4:45303476-45303495 None:intergenic 40.0%
CTTGGATCCAGAAATCGATA+TGG - chr2.4:45303823-45303842 None:intergenic 40.0%
GTAATTGTAACCCATTTGCC+TGG - chr2.4:45303650-45303669 None:intergenic 40.0%
GTACCAATCCTGTTTGTAAC+CGG - chr2.4:45304175-45304194 None:intergenic 40.0%
GTTTAGGCTTAAACCTTCCT+CGG - chr2.4:45303510-45303529 None:intergenic 40.0%
TGCTTGCAAAGTTCAACTTC+TGG + chr2.4:45304435-45304454 MS.gene85295:CDS 40.0%
TGTTACAGGTGTGGTTTACT+CGG + chr2.4:45304070-45304089 MS.gene85295:CDS 40.0%
TTCGGCTGGATAAATCCAAA+GGG - chr2.4:45303857-45303876 None:intergenic 40.0%
TTTCGGCTGGATAAATCCAA+AGG - chr2.4:45303858-45303877 None:intergenic 40.0%
TTTGCAAGCAGAATTAGAGC+CGG - chr2.4:45304425-45304444 None:intergenic 40.0%
! ACATACCGACAAAGTTTGCT+CGG + chr2.4:45304093-45304112 MS.gene85295:CDS 40.0%
! CATCAACCTTGTGATGGAAT+TGG - chr2.4:45303700-45303719 None:intergenic 40.0%
! GATTTCTGGATCCAAGTACA+TGG + chr2.4:45303827-45303846 MS.gene85295:CDS 40.0%
! GCGGTCATCATAAGCTTTTA+GGG - chr2.4:45303912-45303931 None:intergenic 40.0%
! GCGTATGCTAAAAAAGGTAC+CGG + chr2.4:45304403-45304422 MS.gene85295:CDS 40.0%
! TGCGGTCATCATAAGCTTTT+AGG - chr2.4:45303913-45303932 None:intergenic 40.0%
!! ATGGACCTTCCTCTAAAACA+GGG - chr2.4:45303727-45303746 None:intergenic 40.0%
!! TGATGCAAACCCTGTTTTAG+AGG + chr2.4:45303715-45303734 MS.gene85295:CDS 40.0%
!!! GGTGTTTTTTGTTACAGGTG+TGG + chr2.4:45304061-45304080 MS.gene85295:CDS 40.0%
AAGCCGGTTACAAACAGGAT+TGG + chr2.4:45304169-45304188 MS.gene85295:CDS 45.0%
ACCTTAAGCCGGTTACAAAC+AGG + chr2.4:45304164-45304183 MS.gene85295:CDS 45.0%
AGACATACGCTCGCTGAAAT+AGG - chr2.4:45303615-45303634 None:intergenic 45.0%
AGTGAATGAGGACAATGGCT+CGG + chr2.4:45304558-45304577 MS.gene85295:CDS 45.0%
ATAACCCCATCAGCAGCAAA+TGG - chr2.4:45304628-45304647 None:intergenic 45.0%
CAAAATCGCCATTGCTTGCA+CGG - chr2.4:45304012-45304031 None:intergenic 45.0%
CAACTCCGAGCAAACTTTGT+CGG - chr2.4:45304101-45304120 None:intergenic 45.0%
CAAGGTCTAGGCAGTTTCTT+AGG + chr2.4:45303884-45303903 MS.gene85295:CDS 45.0%
CAGGTAAACCAAGCACTAGA+GGG - chr2.4:45304507-45304526 None:intergenic 45.0%
CAGGTTCAGACTCTAGGTTT+AGG - chr2.4:45303526-45303545 None:intergenic 45.0%
CCCAATCATCTCAATCTCGA+AGG + chr2.4:45303473-45303492 MS.gene85295:CDS 45.0%
CCTAGACCTTGACCTACTTT+CGG - chr2.4:45303875-45303894 None:intergenic 45.0%
CTTGTTTCATGGCAGTGAGT+TGG - chr2.4:45304360-45304379 None:intergenic 45.0%
GAGGAAGTGAATGAGGACAA+TGG + chr2.4:45304553-45304572 MS.gene85295:CDS 45.0%
GCCTTCGAGATTGAGATGAT+TGG - chr2.4:45303477-45303496 None:intergenic 45.0%
GGATTTATCCAGCCGAAAGT+AGG + chr2.4:45303860-45303879 MS.gene85295:CDS 45.0%
GGTTTGCATCAACCTTGTGA+TGG - chr2.4:45303706-45303725 None:intergenic 45.0%
TCAGTCACAAACGGAAAAGC+AGG - chr2.4:45304526-45304545 None:intergenic 45.0%
TGATCCGCATATAGGAGCTA+TGG - chr2.4:45303943-45303962 None:intergenic 45.0%
TTCCTCCTCTACAGGAACTT+CGG + chr2.4:45304459-45304478 MS.gene85295:CDS 45.0%
TTTGCTGCTGATGGGGTTAT+GGG + chr2.4:45304628-45304647 MS.gene85295:CDS 45.0%
! AGAACCATTTGCTGCTGATG+GGG + chr2.4:45304621-45304640 MS.gene85295:CDS 45.0%
! AGGAGCTATGGATTGAGTTG+CGG - chr2.4:45303931-45303950 None:intergenic 45.0%
! ATGGCTCGGAATTGAGGAAA+AGG + chr2.4:45304572-45304591 MS.gene85295:CDS 45.0%
! ATTTGCTGCTGATGGGGTTA+TGG + chr2.4:45304627-45304646 MS.gene85295:CDS 45.0%
! GAGAACCATTTGCTGCTGAT+GGG + chr2.4:45304620-45304639 MS.gene85295:CDS 45.0%
! TCCTGTTTGTAACCGGCTTA+AGG - chr2.4:45304168-45304187 None:intergenic 45.0%
! TTCGGCCTCTAGTTTACTGT+CGG + chr2.4:45304477-45304496 MS.gene85295:CDS 45.0%
!! CAGTTTCAGGTTCAGACTCT+AGG - chr2.4:45303532-45303551 None:intergenic 45.0%
!! CATGGACCTTCCTCTAAAAC+AGG - chr2.4:45303728-45303747 None:intergenic 45.0%
!!! CTGTTTTAGAGGAAGGTCCA+TGG + chr2.4:45303726-45303745 MS.gene85295:CDS 45.0%
!!! GCAAACCCTGTTTTAGAGGA+AGG + chr2.4:45303719-45303738 MS.gene85295:CDS 45.0%
AACCTTCCTCGGACAAAGTC+AGG - chr2.4:45303499-45303518 None:intergenic 50.0%
ACACGCCATGCTTTCTTCAG+AGG - chr2.4:45303989-45304008 None:intergenic 50.0%
ATCCAGCCGAAAGTAGGTCA+AGG + chr2.4:45303866-45303885 MS.gene85295:CDS 50.0%
CAAAGGGCAGACCATGTACT+TGG - chr2.4:45303841-45303860 None:intergenic 50.0%
CAAGTACATGGTCTGCCCTT+TGG + chr2.4:45303839-45303858 MS.gene85295:CDS 50.0%
CCGAAAGTAGGTCAAGGTCT+AGG + chr2.4:45303872-45303891 MS.gene85295:CDS 50.0%
CGCATGTTTGCCCTTCAGAA+TGG + chr2.4:45304598-45304617 MS.gene85295:CDS 50.0%
GAATGGGATCTTGAAGCCAG+CGG - chr2.4:45304210-45304229 None:intergenic 50.0%
GACCAATGAGACAGTGTTCG+AGG - chr2.4:45303562-45303581 None:intergenic 50.0%
GCAGGTAAACCAAGCACTAG+AGG - chr2.4:45304508-45304527 None:intergenic 50.0%
GCTCGCTGAAATAGGCAAAC+TGG - chr2.4:45303607-45303626 None:intergenic 50.0%
GTAAACCAAGCACTAGAGGG+CGG - chr2.4:45304504-45304523 None:intergenic 50.0%
GTCATGGATCGAATCTCACC+TGG + chr2.4:45303770-45303789 MS.gene85295:CDS 50.0%
GTCCTCGAACACTGTCTCAT+TGG + chr2.4:45303557-45303576 MS.gene85295:CDS 50.0%
TGCTTGGAAGCCAGGCAAAT+GGG + chr2.4:45303637-45303656 MS.gene85295:CDS 50.0%
! ACAAAGTTTGGGACGACACC+AGG - chr2.4:45303791-45303810 None:intergenic 50.0%
! AGGACAATGGCTCGGAATTG+AGG + chr2.4:45304566-45304585 MS.gene85295:CDS 50.0%
! CTGTGCCTCTGAAGAAAGCA+TGG + chr2.4:45303981-45304000 MS.gene85295:CDS 50.0%
! GGAGAACCATTTGCTGCTGA+TGG + chr2.4:45304619-45304638 MS.gene85295:CDS 50.0%
! TCGGCCTCTAGTTTACTGTC+GGG + chr2.4:45304478-45304497 MS.gene85295:CDS 50.0%
AGAGGCCGAAGTTCCTGTAG+AGG - chr2.4:45304467-45304486 None:intergenic 55.0%
ATGTCTCGTGCTTGGAAGCC+AGG + chr2.4:45303629-45303648 MS.gene85295:CDS 55.0%
CGACACACATGCTGCTGGTA+CGG + chr2.4:45304291-45304310 MS.gene85295:CDS 55.0%
CGTGGCACAGATACGGGAAT+GGG - chr2.4:45304226-45304245 None:intergenic 55.0%
GACACACATGCTGCTGGTAC+GGG + chr2.4:45304292-45304311 MS.gene85295:CDS 55.0%
GACCTTGACCTACTTTCGGC+TGG - chr2.4:45303871-45303890 None:intergenic 55.0%
GGTTTGGCGTGGCACAGATA+CGG - chr2.4:45304233-45304252 None:intergenic 55.0%
GTGCTTGGAAGCCAGGCAAA+TGG + chr2.4:45303636-45303655 MS.gene85295:CDS 55.0%
GTTTGGCGTGGCACAGATAC+GGG - chr2.4:45304232-45304251 None:intergenic 55.0%
TCGAGGACAGCAGCAGTTTC+AGG - chr2.4:45303545-45303564 None:intergenic 55.0%
TTGGGGAGCTGACCTTAAGC+CGG + chr2.4:45304153-45304172 MS.gene85295:CDS 55.0%
!! CTTCTGGCTTCCTCCTCTAC+AGG + chr2.4:45304451-45304470 MS.gene85295:CDS 55.0%
!! TCATGGCAGTGAGTTGGTGC+TGG - chr2.4:45304354-45304373 None:intergenic 55.0%
AGCAGTGCCACCAGCAGCAT+GGG - chr2.4:45304254-45304273 None:intergenic 60.0%
CGAAGGCCTGACTTTGTCCG+AGG + chr2.4:45303490-45303509 MS.gene85295:CDS 60.0%
GCGAGCGTATGTCTCGTGCT+TGG + chr2.4:45303621-45303640 MS.gene85295:CDS 60.0%
GCGGCCCGACAGTAAACTAG+AGG - chr2.4:45304485-45304504 None:intergenic 60.0%
GCGTGGCACAGATACGGGAA+TGG - chr2.4:45304227-45304246 None:intergenic 60.0%
GGCCGAAGTTCCTGTAGAGG+AGG - chr2.4:45304464-45304483 None:intergenic 60.0%
GGCCTGACTTTGTCCGAGGA+AGG + chr2.4:45303494-45303513 MS.gene85295:CDS 60.0%
GGGATCTTGAAGCCAGCGGT+TGG - chr2.4:45304206-45304225 None:intergenic 60.0%
GTACTGCTGCAACCAACCGC+TGG + chr2.4:45304191-45304210 MS.gene85295:CDS 60.0%
TGCCACCAGCAGCATGGGTT+TGG - chr2.4:45304249-45304268 None:intergenic 60.0%
TGGCGTGTCCGTGCAAGCAA+TGG + chr2.4:45304001-45304020 MS.gene85295:CDS 60.0%
!! GGCAGTGAGTTGGTGCTGGA+AGG - chr2.4:45304350-45304369 None:intergenic 60.0%
CAGCAGTGCCACCAGCAGCA+TGG - chr2.4:45304255-45304274 None:intergenic 65.0%
CCACGCCAAACCCATGCTGC+TGG + chr2.4:45304241-45304260 MS.gene85295:CDS 65.0%
CCAGCAGCATGGGTTTGGCG+TGG - chr2.4:45304244-45304263 None:intergenic 65.0%
CGCCAAACCCATGCTGCTGG+TGG + chr2.4:45304244-45304263 MS.gene85295:CDS 65.0%
GCATGTGTGTCGCAGCCAGC+AGG - chr2.4:45304283-45304302 None:intergenic 65.0%
GGCACTGCTGCTGTTCCTGC+TGG + chr2.4:45304265-45304284 MS.gene85295:CDS 65.0%
GGCTGCGACACACATGCTGC+TGG + chr2.4:45304286-45304305 MS.gene85295:CDS 65.0%
TCGGGCCGCCCTCTAGTGCT+TGG + chr2.4:45304496-45304515 MS.gene85295:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 45303467 45304739 45303467 ID=MS.gene85295
chr2.4 mRNA 45303467 45304739 45303467 ID=MS.gene85295.t1;Parent=MS.gene85295
chr2.4 exon 45303467 45304657 45303467 ID=MS.gene85295.t1.exon1;Parent=MS.gene85295.t1
chr2.4 CDS 45303467 45304657 45303467 ID=cds.MS.gene85295.t1;Parent=MS.gene85295.t1
chr2.4 exon 45304734 45304739 45304734 ID=MS.gene85295.t1.exon2;Parent=MS.gene85295.t1
chr2.4 CDS 45304734 45304739 45304734 ID=cds.MS.gene85295.t1;Parent=MS.gene85295.t1
Gene Sequence

>MS.gene85295

ATGGATCCCAATCATCTCAATCTCGAAGGCCTGACTTTGTCCGAGGAAGGTTTAAGCCTAAACCTAGAGTCTGAACCTGAAACTGCTGCTGTCCTCGAACACTGTCTCATTGGTCGTGTGCTTGCTGATCGTGAAATCCAGTTTGCCTATTTCAGCGAGCGTATGTCTCGTGCTTGGAAGCCAGGCAAATGGGTTACAATTACTAAGTCTGTGAATGATCGCTATTTGTTCCAATTCCATCACAAGGTTGATGCAAACCCTGTTTTAGAGGAAGGTCCATGGTTGTATGACAATTTTCATATTGTCATGGATCGAATCTCACCTGGTGTCGTCCCAAACTTTGTTCCTCTAAACCATATCGATTTCTGGATCCAAGTACATGGTCTGCCCTTTGGATTTATCCAGCCGAAAGTAGGTCAAGGTCTAGGCAGTTTCTTAGGAACCCTAAAAGCTTATGATGACCGCAACTCAATCCATAGCTCCTATATGCGGATCAAAGTTGCTATTGATGTCACTGTGCCTCTGAAGAAAGCATGGCGTGTCCGTGCAAGCAATGGCGATTTTGTTACTATTAATTTTAAATATGAGAAATTGGGTGTTTTTTGTTACAGGTGTGGTTTACTCGGACATACCGACAAAGTTTGCTCGGAGTTGTTTGAATTAGAAGCTGATGATGGAATTCGTAATTGGGGAGCTGACCTTAAGCCGGTTACAAACAGGATTGGTACTGCTGCAACCAACCGCTGGCTTCAAGATCCCATTCCCGTATCTGTGCCACGCCAAACCCATGCTGCTGGTGGCACTGCTGCTGTTCCTGCTGGCTGCGACACACATGCTGCTGGTACGGGAACTCTGACCTCTTTTAATGATCGTATGCTTGCCTTCCAGCACCAACTCACTGCCATGAAACAAGATGTTATTGCTGCCCAAAATGCAGCGTATGCTAAAAAAGGTACCGGCTCTAATTCTGCTTGCAAAGTTCAACTTCTGGCTTCCTCCTCTACAGGAACTTCGGCCTCTAGTTTACTGTCGGGCCGCCCTCTAGTGCTTGGTTTACCTGCTTTTCCGTTTGTGACTGAAAATAATGAGGAAGTGAATGAGGACAATGGCTCGGAATTGAGGAAAAGGAAACGCATGTTTGCCCTTCAGAATGGAGAACCATTTGCTGCTGATGGGGTTATGGGAAACAATGTAATAGGAACAAATGTTAGTCATGGGGAGGATGCTGAAATGAATGTATTTTCTAATCCTTTGTTTGATGAAAAAGTTGTAA

Protein sequence

>MS.gene85295.t1

MDPNHLNLEGLTLSEEGLSLNLESEPETAAVLEHCLIGRVLADREIQFAYFSERMSRAWKPGKWVTITKSVNDRYLFQFHHKVDANPVLEEGPWLYDNFHIVMDRISPGVVPNFVPLNHIDFWIQVHGLPFGFIQPKVGQGLGSFLGTLKAYDDRNSIHSSYMRIKVAIDVTVPLKKAWRVRASNGDFVTINFKYEKLGVFCYRCGLLGHTDKVCSELFELEADDGIRNWGADLKPVTNRIGTAATNRWLQDPIPVSVPRQTHAAGGTAAVPAGCDTHAAGTGTLTSFNDRMLAFQHQLTAMKQDVIAAQNAAYAKKGTGSNSACKVQLLASSSTGTSASSLLSGRPLVLGLPAFPFVTENNEEVNEDNGSELRKRKRMFALQNGEPFAADGVMGNNL