AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037049

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037049.t1 MTR_1g036720 73.874 111 29 0 1 111 1 111 1.88e-55 174
MS.gene037049.t1 MTR_0010s0370 74.107 112 29 0 1 112 1 112 6.50e-55 175
MS.gene037049.t1 MTR_0010s0350 74.107 112 29 0 1 112 1 112 6.50e-55 175
MS.gene037049.t1 MTR_1g051330 51.136 88 41 1 134 221 27 112 3.22e-16 78.6
MS.gene037049.t1 MTR_1g036710 38.235 102 52 3 113 210 66 160 1.85e-12 66.2
MS.gene037049.t1 MTR_2g061500 34.884 86 56 0 34 119 36 121 5.02e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 64 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATACGATGTCGAAAATT+TGG 0.144347 2.3:+51062506 None:intergenic
TGCATCTTCTGCGACATTTC+TGG 0.168270 2.3:+51062457 None:intergenic
TGGAGAAGATAGAAACATTA+TGG 0.335313 2.3:-51064430 MS.gene037049:CDS
TTGCGTCTGCTGCCTTTGAT+TGG 0.336623 2.3:+51063757 None:intergenic
CAGAATTGCCGTTACCGTTT+GGG 0.338577 2.3:+51063787 None:intergenic
CGACCAATGAGTCGAAGGTT+AGG 0.350930 2.3:+51064491 None:intergenic
CTTGTGAACGCCGCTGCCAT+TGG 0.390563 2.3:+51063857 None:intergenic
GATTGGAGGGTGACTTGGTT+TGG 0.402521 2.3:+51064251 None:intergenic
GGCTGTGGGAGTGGAATATC+AGG 0.406937 2.3:+51064521 None:intergenic
ACAGAATTGCCGTTACCGTT+TGG 0.409564 2.3:+51063786 None:intergenic
TTCGAATCGGGCGATTAGTA+AGG 0.420075 2.3:+51064465 None:intergenic
GTTGCATAATTTCTAGATGC+AGG 0.420159 2.3:+51062429 None:intergenic
AACCCTAACCTTCGACTCAT+TGG 0.421291 2.3:-51064494 MS.gene037049:CDS
GCCGTTACCGTTTGGGTTTG+TGG 0.421356 2.3:+51063794 None:intergenic
ACCGTTTGGGTTTGTGGCTG+AGG 0.431404 2.3:+51063800 None:intergenic
TAATGAGGAGACAATATTAG+AGG 0.433752 2.3:-51063655 MS.gene037049:CDS
TGCTTGTCAACACGCAAATC+CGG 0.435070 2.3:+51063885 None:intergenic
GAAAATAATGAGGCTATCAT+TGG 0.438620 2.3:-51063633 MS.gene037049:CDS
GGGTTAGCCGGCTGTGGGAG+TGG 0.447199 2.3:+51064512 None:intergenic
AGGTTAGGGTTAGCCGGCTG+TGG 0.449124 2.3:+51064506 None:intergenic
ATCATCATGTAGTTTCGAAT+CGG 0.461140 2.3:+51064452 None:intergenic
TGAGGTGAGTCAGCCACATC+AGG 0.473185 2.3:-51063559 MS.gene037049:CDS
TCTCCGTGGTATCAAAATAG+AGG 0.481534 2.3:-51064402 MS.gene037049:CDS
ACACATTTATGTTTGTTGAC+TGG 0.496820 2.3:+51063694 None:intergenic
GCAGCGGCGTTCACAAGCTA+AGG 0.498250 2.3:-51063851 MS.gene037049:CDS
TCATCATGTAGTTTCGAATC+GGG 0.501753 2.3:+51064453 None:intergenic
GAGTTGTTGAAGAGAGGCCA+TGG 0.503502 2.3:+51064580 None:intergenic
GACCAATGAGTCGAAGGTTA+GGG 0.510020 2.3:+51064492 None:intergenic
TCAACAAACATAAATGTGTC+AGG 0.514943 2.3:-51063690 MS.gene037049:CDS
AAAATAGAGGAAATCGAACC+AGG 0.521767 2.3:-51064389 MS.gene037049:CDS
AATTGAAATGAAAATAGGCC+TGG 0.527709 2.3:+51064371 None:intergenic
TTTGGGTTTGTGGCTGAGGA+TGG 0.534759 2.3:+51063804 None:intergenic
TTCTGTAACTGTCCAATCAA+AGG 0.538356 2.3:-51063769 MS.gene037049:CDS
GATTCGAAACTACATGATGA+TGG 0.539210 2.3:-51064450 MS.gene037049:CDS
TCTTCAAAGAATCCTCAAGA+AGG 0.542652 2.3:-51064333 MS.gene037049:CDS
TCCTCAGCCACAAACCCAAA+CGG 0.544596 2.3:-51063801 MS.gene037049:CDS
GTTGACAAGCAACGCTCCAA+TGG 0.548676 2.3:-51063873 MS.gene037049:CDS
TTGACTGGCGCATTAAGTGC+GGG 0.551953 2.3:+51063709 None:intergenic
GTTGACTGGCGCATTAAGTG+CGG 0.559397 2.3:+51063708 None:intergenic
AGTCGAAGGTTAGGGTTAGC+CGG 0.569459 2.3:+51064500 None:intergenic
ACAACTCTTCTTGAGTGAAG+AGG 0.572498 2.3:-51064564 MS.gene037049:CDS
TTCTTTGAAGATCTAAGTGG+TGG 0.572647 2.3:+51064345 None:intergenic
AATATTAGAGGAAAATAATG+AGG 0.572950 2.3:-51063643 MS.gene037049:CDS
TCATTGGCAGCAAACTGAAA+CGG 0.579589 2.3:-51063617 MS.gene037049:CDS
TGATATTCCACTCCCACAGC+CGG 0.586255 2.3:-51064519 MS.gene037049:CDS
GAATCCTCAAGAAGGGTCCA+TGG 0.587291 2.3:-51064325 MS.gene037049:CDS
AGTACCATGGACCCTTCTTG+AGG 0.587955 2.3:+51064321 None:intergenic
AAGCAACGCTCCAATGGCAG+CGG 0.590024 2.3:-51063867 MS.gene037049:CDS
CAAGAAGAGTTGTTGAAGAG+AGG 0.598467 2.3:+51064574 None:intergenic
ACTCTTCTTGAGTGAAGAGG+AGG 0.603678 2.3:-51064561 MS.gene037049:CDS
GGATTCTTTGAAGATCTAAG+TGG 0.604888 2.3:+51064342 None:intergenic
CTTCAAAGAATCCTCAAGAA+GGG 0.604972 2.3:-51064332 MS.gene037049:CDS
GCCACAAACCCAAACGGTAA+CGG 0.610869 2.3:-51063795 MS.gene037049:CDS
GGTTAGGGTTAGCCGGCTGT+GGG 0.611224 2.3:+51064507 None:intergenic
CAGCGGCGTTCACAAGCTAA+GGG 0.627746 2.3:-51063850 MS.gene037049:CDS
GGAAACGACCAATGAGTCGA+AGG 0.628210 2.3:+51064486 None:intergenic
GGCGTTCACAAGCTAAGGGA+CGG 0.629905 2.3:-51063846 MS.gene037049:CDS
AGGTACAAATCAGATTAATG+AGG 0.631036 2.3:-51063670 MS.gene037049:CDS
GGAGAACATCTAGAATCAGA+AGG 0.650046 2.3:+51064288 None:intergenic
CACTGCTGAGCATCTAGCTG+AGG 0.654398 2.3:-51063577 MS.gene037049:CDS
ACATCAGCAGTTACCTGATG+TGG 0.656267 2.3:+51063546 None:intergenic
AGGTGATTATCAAAGTACCA+TGG 0.676237 2.3:+51064308 None:intergenic
GTTCACAAGCTAAGGGACGG+TGG 0.701643 2.3:-51063843 MS.gene037049:CDS
ACATTATGGAATCCTCTCCG+TGG 0.724354 2.3:-51064416 MS.gene037049:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAGAGGAAAATAATG+AGG - chr2.3:51063376-51063395 MS.gene037049:intron 20.0%
!! GGAAAAATTGAAATGAAAAT+AGG + chr2.3:51062656-51062675 None:intergenic 20.0%
!! TAGTTTAGTAATGATATTAG+TGG + chr2.3:51064448-51064467 None:intergenic 20.0%
!! TCAATCAAAATTACAATATC+CGG + chr2.3:51063730-51063749 None:intergenic 20.0%
!!! AATACCCAAGTATTTTTTAT+TGG - chr2.3:51063589-51063608 MS.gene037049:CDS 20.0%
! AAAGACATTGCAAACTTTAT+TGG - chr2.3:51062852-51062871 MS.gene037049:intron 25.0%
! AAATTCAAATATGAGCTTCT+AGG - chr2.3:51063014-51063033 MS.gene037049:intron 25.0%
! CATTGTTAAATTGGAAACTT+CGG + chr2.3:51064365-51064384 None:intergenic 25.0%
! TACTAAACTACAATATTGTG+TGG - chr2.3:51064458-51064477 MS.gene037049:CDS 25.0%
! TTAGTAATGATATTAGTGGA+AGG + chr2.3:51064444-51064463 None:intergenic 25.0%
! TTCGCATAACTTTATCAATA+TGG - chr2.3:51063891-51063910 MS.gene037049:CDS 25.0%
!! CTCGAATTTTCATATATAAG+CGG + chr2.3:51062920-51062939 None:intergenic 25.0%
!!! ATTTTTTTCATGCGTTTCAA+TGG + chr2.3:51062963-51062982 None:intergenic 25.0%
AAAATGCAGTTCATGATTGT+CGG - chr2.3:51064127-51064146 MS.gene037049:intron 30.0%
AAAGCCAGTCATTGTTAAAT+TGG + chr2.3:51064374-51064393 None:intergenic 30.0%
AATTGAAATGAAAATAGGCC+TGG + chr2.3:51062651-51062670 None:intergenic 30.0%
AGGTACAAATCAGATTAATG+AGG - chr2.3:51063349-51063368 MS.gene037049:intron 30.0%
ATCATCATGTAGTTTCGAAT+CGG + chr2.3:51062570-51062589 None:intergenic 30.0%
ATGAAAAAAATTAAGCTGCC+GGG - chr2.3:51062972-51062991 MS.gene037049:intron 30.0%
CATGAAAAAAATTAAGCTGC+CGG - chr2.3:51062971-51062990 MS.gene037049:intron 30.0%
GAAAATAATGAGGCTATCAT+TGG - chr2.3:51063386-51063405 MS.gene037049:intron 30.0%
GAAGCTCATATTTGAATTTG+AGG + chr2.3:51063013-51063032 None:intergenic 30.0%
GATATTAGTGGAAGGATATT+GGG + chr2.3:51064436-51064455 None:intergenic 30.0%
GCCACCAATAAAAAATACTT+GGG + chr2.3:51063596-51063615 None:intergenic 30.0%
GTATTTGATTGATCTCCATA+GGG + chr2.3:51063574-51063593 None:intergenic 30.0%
GTTTCCAATTTAACAATGAC+TGG - chr2.3:51064367-51064386 MS.gene037049:CDS 30.0%
TAATGAGGAGACAATATTAG+AGG - chr2.3:51063364-51063383 MS.gene037049:intron 30.0%
TATTTGATTGATCTCCATAG+GGG + chr2.3:51063573-51063592 None:intergenic 30.0%
TCAACAAACATAAATGTGTC+AGG - chr2.3:51063329-51063348 MS.gene037049:intron 30.0%
TCTGATTTATGTTACACAGT+TGG - chr2.3:51063775-51063794 MS.gene037049:CDS 30.0%
TGATATTAGTGGAAGGATAT+TGG + chr2.3:51064437-51064456 None:intergenic 30.0%
TGCCACCAATAAAAAATACT+TGG + chr2.3:51063597-51063616 None:intergenic 30.0%
TGGAGAAGATAGAAACATTA+TGG - chr2.3:51062589-51062608 MS.gene037049:intron 30.0%
TTGATACGATGTCGAAAATT+TGG + chr2.3:51064516-51064535 None:intergenic 30.0%
! ACACATTTATGTTTGTTGAC+TGG + chr2.3:51063328-51063347 None:intergenic 30.0%
! ATGATGGAATCAGATTATAG+GGG - chr2.3:51063111-51063130 MS.gene037049:intron 30.0%
! TATTCGATTGATTCAGATGA+TGG - chr2.3:51063095-51063114 MS.gene037049:intron 30.0%
! TTGATTGAAACACTTGTTGA+TGG - chr2.3:51063742-51063761 MS.gene037049:CDS 30.0%
!! AGATGATGGAATCAGATTAT+AGG - chr2.3:51063109-51063128 MS.gene037049:intron 30.0%
!! GATGATGGAATCAGATTATA+GGG - chr2.3:51063110-51063129 MS.gene037049:intron 30.0%
!!! ACCCAAGTATTTTTTATTGG+TGG - chr2.3:51063592-51063611 MS.gene037049:CDS 30.0%
!!! TTTCCTCTATTTTGATACCA+CGG + chr2.3:51062623-51062642 None:intergenic 30.0%
AAAATAGAGGAAATCGAACC+AGG - chr2.3:51062630-51062649 MS.gene037049:intron 35.0%
AAATATACTTTGCCATGAGG+AGG + chr2.3:51064250-51064269 None:intergenic 35.0%
AAATTCCACGTTACAAACAC+TGG - chr2.3:51064272-51064291 MS.gene037049:CDS 35.0%
AAGACCCTATCAATGGTAAT+TGG - chr2.3:51063920-51063939 MS.gene037049:intron 35.0%
AATTACCATTGATAGGGTCT+TGG + chr2.3:51063921-51063940 None:intergenic 35.0%
AGAGATGATGTTGTTGTCAT+GGG + chr2.3:51063516-51063535 None:intergenic 35.0%
AGTCTCCAATTACCATTGAT+AGG + chr2.3:51063928-51063947 None:intergenic 35.0%
CTTCAAAGAATCCTCAAGAA+GGG - chr2.3:51062687-51062706 MS.gene037049:intron 35.0%
GAGCAATGAATATCATCTCT+TGG - chr2.3:51063638-51063657 MS.gene037049:CDS 35.0%
GATTCGAAACTACATGATGA+TGG - chr2.3:51062569-51062588 MS.gene037049:intron 35.0%
GGTATTTGATTGATCTCCAT+AGG + chr2.3:51063575-51063594 None:intergenic 35.0%
GTCTCCAATTACCATTGATA+GGG + chr2.3:51063927-51063946 None:intergenic 35.0%
TCATCATGTAGTTTCGAATC+GGG + chr2.3:51062569-51062588 None:intergenic 35.0%
TCCTTGGTTATCAATTCACA+TGG - chr2.3:51064166-51064185 MS.gene037049:intron 35.0%
TCTTCAAAGAATCCTCAAGA+AGG - chr2.3:51062686-51062705 MS.gene037049:intron 35.0%
TGCAAATATACTTTGCCATG+AGG + chr2.3:51064253-51064272 None:intergenic 35.0%
TGTGGATGATATGTCTACTT+GGG - chr2.3:51064476-51064495 MS.gene037049:CDS 35.0%
TTAAATTGGAAACTTCGGTG+TGG + chr2.3:51064360-51064379 None:intergenic 35.0%
TTCTGTAACTGTCCAATCAA+AGG - chr2.3:51063250-51063269 MS.gene037049:intron 35.0%
! ACCATGTGAATTGATAACCA+AGG + chr2.3:51064170-51064189 None:intergenic 35.0%
! AGAGGTGTATGATCTGAAAT+AGG + chr2.3:51064303-51064322 None:intergenic 35.0%
! AGGTGATTATCAAAGTACCA+TGG + chr2.3:51062714-51062733 None:intergenic 35.0%
! CACTTTTCTGTTGATCGAAT+TGG - chr2.3:51063808-51063827 MS.gene037049:CDS 35.0%
! GGATTCTTTGAAGATCTAAG+TGG + chr2.3:51062680-51062699 None:intergenic 35.0%
! GGTTCTAATTGTAACAGAAG+AGG + chr2.3:51064321-51064340 None:intergenic 35.0%
! TAAAGAAGCTCGACTTGATA+GGG - chr2.3:51064215-51064234 MS.gene037049:intron 35.0%
! TTCACATGGTTCAAAAGCAT+TGG - chr2.3:51064180-51064199 MS.gene037049:intron 35.0%
! TTCTTTGAAGATCTAAGTGG+TGG + chr2.3:51062677-51062696 None:intergenic 35.0%
!! GAGATAGTTTGAGTTGTTCT+TGG + chr2.3:51062898-51062917 None:intergenic 35.0%
!!! TATTTTTTATTGGTGGCACC+TGG - chr2.3:51063599-51063618 MS.gene037049:CDS 35.0%
!!! TTGGTTTGGTGCATAGTTTT+CGG + chr2.3:51062757-51062776 None:intergenic 35.0%
AAAAAAATTAAGCTGCCGGG+AGG - chr2.3:51062975-51062994 MS.gene037049:intron 40.0%
AAAAAATTAAGCTGCCGGGA+GGG - chr2.3:51062976-51062995 MS.gene037049:intron 40.0%
AATGATTCGTGGTGTGTCAT+AGG - chr2.3:51064027-51064046 MS.gene037049:intron 40.0%
ACAACTCTTCTTGAGTGAAG+AGG - chr2.3:51062455-51062474 MS.gene037049:CDS 40.0%
AGAGTCAGAATAGCCGTAAA+AGG + chr2.3:51063956-51063975 None:intergenic 40.0%
ATGATATGTCTACTTGGGGT+AGG - chr2.3:51064481-51064500 MS.gene037049:CDS 40.0%
CAAGAAGAGTTGTTGAAGAG+AGG + chr2.3:51062448-51062467 None:intergenic 40.0%
CAATATCCGGTTTATAGACG+CGG + chr2.3:51063717-51063736 None:intergenic 40.0%
CACACCACGAATCATTTGAA+AGG + chr2.3:51064023-51064042 None:intergenic 40.0%
CGACCTTGTGAAGACAAATT+GGG - chr2.3:51064410-51064429 MS.gene037049:CDS 40.0%
GAACTGCCTTAACATTTCCA+AGG + chr2.3:51063675-51063694 None:intergenic 40.0%
GAGAGATGATGTTGTTGTCA+TGG + chr2.3:51063517-51063536 None:intergenic 40.0%
GAGATGATATTCATTGCTCC+CGG + chr2.3:51063637-51063656 None:intergenic 40.0%
GATGCATGTCTGAGAAAGTA+GGG - chr2.3:51062829-51062848 MS.gene037049:intron 40.0%
GTGGATGATATGTCTACTTG+GGG - chr2.3:51064477-51064496 MS.gene037049:CDS 40.0%
GTGTGGATGATATGTCTACT+TGG - chr2.3:51064475-51064494 MS.gene037049:CDS 40.0%
GTTATCCAAGACCCTATCAA+TGG - chr2.3:51063913-51063932 MS.gene037049:intron 40.0%
TATGAAAATTCGAGTCCTGC+TGG - chr2.3:51062926-51062945 MS.gene037049:intron 40.0%
TCATTGGCAGCAAACTGAAA+CGG - chr2.3:51063402-51063421 MS.gene037049:intron 40.0%
TCGACCTTGTGAAGACAAAT+TGG - chr2.3:51064409-51064428 MS.gene037049:CDS 40.0%
TCTCCGTGGTATCAAAATAG+AGG - chr2.3:51062617-51062636 MS.gene037049:intron 40.0%
TCTCGCAATAGTCTTCTATG+TGG + chr2.3:51063070-51063089 None:intergenic 40.0%
TGTTCTTGGCATCATACTCA+AGG + chr2.3:51062884-51062903 None:intergenic 40.0%
TTGTCTTCACAAGGTCGATA+AGG + chr2.3:51064407-51064426 None:intergenic 40.0%
! CTAAAGAAGCTCGACTTGAT+AGG - chr2.3:51064214-51064233 MS.gene037049:intron 40.0%
! GGAGAACATCTAGAATCAGA+AGG + chr2.3:51062734-51062753 None:intergenic 40.0%
! GTGAATTGATAACCAAGGAG+CGG + chr2.3:51064165-51064184 None:intergenic 40.0%
! TTGTTGTCATGGGTGGATTT+CGG + chr2.3:51063506-51063525 None:intergenic 40.0%
! TTTTACGGCTATTCTGACTC+TGG - chr2.3:51063955-51063974 MS.gene037049:intron 40.0%
!!! GGCAACTTCTGTTACTTTTG+TGG - chr2.3:51063035-51063054 MS.gene037049:intron 40.0%
!!! GTGGTGGGTTAGCAATTTTA+TGG - chr2.3:51063836-51063855 MS.gene037049:CDS 40.0%
!!! TCTATTTTGATACCACGGAG+AGG + chr2.3:51062618-51062637 None:intergenic 40.0%
!!! TGGTTTGGTGCATAGTTTTC+GGG + chr2.3:51062756-51062775 None:intergenic 40.0%
!!! TGTTACTTTTGTGGCTTGCT+GGG - chr2.3:51063044-51063063 MS.gene037049:intron 40.0%
AAAAATTAAGCTGCCGGGAG+GGG - chr2.3:51062977-51062996 MS.gene037049:intron 45.0%
AACCCTAACCTTCGACTCAT+TGG - chr2.3:51062525-51062544 MS.gene037049:intron 45.0%
ACAGAATTGCCGTTACCGTT+TGG + chr2.3:51063236-51063255 None:intergenic 45.0%
ACATCAGCAGTTACCTGATG+TGG + chr2.3:51063476-51063495 None:intergenic 45.0%
ACATTATGGAATCCTCTCCG+TGG - chr2.3:51062603-51062622 MS.gene037049:intron 45.0%
ACTCTTCTTGAGTGAAGAGG+AGG - chr2.3:51062458-51062477 MS.gene037049:CDS 45.0%
ATCGAATTGGACGTAGTGGT+GGG - chr2.3:51063821-51063840 MS.gene037049:CDS 45.0%
ATCTCTCGTCGTCAGATAAG+AGG - chr2.3:51064064-51064083 MS.gene037049:intron 45.0%
ATGATATTCATTGCTCCCGG+CGG + chr2.3:51063634-51063653 None:intergenic 45.0%
CAGAATTGCCGTTACCGTTT+GGG + chr2.3:51063235-51063254 None:intergenic 45.0%
CCTTAACATTTCCAAGGCCT+CGG + chr2.3:51063669-51063688 None:intergenic 45.0%
GACCAATGAGTCGAAGGTTA+GGG + chr2.3:51062530-51062549 None:intergenic 45.0%
GATGATGTTGTTGTCATGGG+TGG + chr2.3:51063513-51063532 None:intergenic 45.0%
GCAGCCTTTCAAATGATTCG+TGG - chr2.3:51064016-51064035 MS.gene037049:intron 45.0%
GGATGCATGTCTGAGAAAGT+AGG - chr2.3:51062828-51062847 MS.gene037049:intron 45.0%
GTTGATCGAATTGGACGTAG+TGG - chr2.3:51063817-51063836 MS.gene037049:CDS 45.0%
TACAATTAGAACCCCTCCCT+TGG - chr2.3:51064328-51064347 MS.gene037049:CDS 45.0%
TCGTGGACATGGATCCAAAA+CGG + chr2.3:51062798-51062817 None:intergenic 45.0%
TCTCTCGTCGTCAGATAAGA+GGG - chr2.3:51064065-51064084 MS.gene037049:intron 45.0%
TCTTATCTGACGACGAGAGA+TGG + chr2.3:51064065-51064084 None:intergenic 45.0%
TGCAACCAGTGTTTGTAACG+TGG + chr2.3:51064280-51064299 None:intergenic 45.0%
TGCATCTTCTGCGACATTTC+TGG + chr2.3:51064565-51064584 None:intergenic 45.0%
TGCTTGTCAACACGCAAATC+CGG + chr2.3:51063137-51063156 None:intergenic 45.0%
TGGAAGACGTCGAGAATCAT+GGG - chr2.3:51063975-51063994 MS.gene037049:intron 45.0%
TGGAATCAGATTATAGGGGC+CGG - chr2.3:51063115-51063134 MS.gene037049:intron 45.0%
TTCACAAGGTCGATAAGGTC+AGG + chr2.3:51064402-51064421 None:intergenic 45.0%
TTCGAATCGGGCGATTAGTA+AGG + chr2.3:51062557-51062576 None:intergenic 45.0%
TTCTCAGACATGCATCCTGT+AGG + chr2.3:51062825-51062844 None:intergenic 45.0%
! ATGGTTTTCCAACATCCAGC+AGG + chr2.3:51062944-51062963 None:intergenic 45.0%
! CGGATCAGGTCTTTTATGGT+GGG + chr2.3:51063697-51063716 None:intergenic 45.0%
! TGGAGACTCACTGCCTTTTA+CGG - chr2.3:51063940-51063959 MS.gene037049:intron 45.0%
!!! CTGTTACTTTTGTGGCTTGC+TGG - chr2.3:51063043-51063062 MS.gene037049:intron 45.0%
!!! GGTTTGGTGCATAGTTTTCG+GGG + chr2.3:51062755-51062774 None:intergenic 45.0%
AGTACCATGGACCCTTCTTG+AGG + chr2.3:51062701-51062720 None:intergenic 50.0%
ATCATCTCTTGGAACTGCCG+AGG - chr2.3:51063649-51063668 MS.gene037049:CDS 50.0%
ATTCGAGTCCTGCTGGATGT+TGG - chr2.3:51062933-51062952 MS.gene037049:intron 50.0%
ATTGATCTCCATAGGGGCAG+AGG + chr2.3:51063567-51063586 None:intergenic 50.0%
CAGACATGCATCCTGTAGGT+AGG + chr2.3:51062821-51062840 None:intergenic 50.0%
CCAAAACGGGACAGATTGGA+GGG + chr2.3:51062784-51062803 None:intergenic 50.0%
CCGAGGCCTTGGAAATGTTA+AGG - chr2.3:51063666-51063685 MS.gene037049:CDS 50.0%
CCTGATCCGCGTCTATAAAC+CGG - chr2.3:51063708-51063727 MS.gene037049:CDS 50.0%
CGACCAATGAGTCGAAGGTT+AGG + chr2.3:51062531-51062550 None:intergenic 50.0%
CGTGGACATGGATCCAAAAC+GGG + chr2.3:51062797-51062816 None:intergenic 50.0%
CTCTCGTCGTCAGATAAGAG+GGG - chr2.3:51064066-51064085 MS.gene037049:intron 50.0%
CTGGAAGACGTCGAGAATCA+TGG - chr2.3:51063974-51063993 MS.gene037049:intron 50.0%
CTTCTAGACTTACCGCTCCT+TGG - chr2.3:51064150-51064169 MS.gene037049:intron 50.0%
GAATCCTCAAGAAGGGTCCA+TGG - chr2.3:51062694-51062713 MS.gene037049:intron 50.0%
GATCGAATTGGACGTAGTGG+TGG - chr2.3:51063820-51063839 MS.gene037049:CDS 50.0%
GCCACAAACCCAAACGGTAA+CGG - chr2.3:51063224-51063243 MS.gene037049:intron 50.0%
GGAAACGACCAATGAGTCGA+AGG + chr2.3:51062536-51062555 None:intergenic 50.0%
GGATCCAAAACGGGACAGAT+TGG + chr2.3:51062788-51062807 None:intergenic 50.0%
GGCTGCTTAGTTGTCGAAGA+AGG + chr2.3:51064002-51064021 None:intergenic 50.0%
GGGCCCAATTTGTCTTCACA+AGG + chr2.3:51064416-51064435 None:intergenic 50.0%
GTTGACAAGCAACGCTCCAA+TGG - chr2.3:51063146-51063165 MS.gene037049:intron 50.0%
GTTGACTGGCGCATTAAGTG+CGG + chr2.3:51063314-51063333 None:intergenic 50.0%
TCCAAAACGGGACAGATTGG+AGG + chr2.3:51062785-51062804 None:intergenic 50.0%
TCCTCAGCCACAAACCCAAA+CGG - chr2.3:51063218-51063237 MS.gene037049:intron 50.0%
TCTCGTCGTCAGATAAGAGG+GGG - chr2.3:51064067-51064086 MS.gene037049:intron 50.0%
TGATATTCATTGCTCCCGGC+GGG + chr2.3:51063633-51063652 None:intergenic 50.0%
TGATATTCCACTCCCACAGC+CGG - chr2.3:51062500-51062519 MS.gene037049:CDS 50.0%
TTGACTGGCGCATTAAGTGC+GGG + chr2.3:51063313-51063332 None:intergenic 50.0%
TTGCGTCTGCTGCCTTTGAT+TGG + chr2.3:51063265-51063284 None:intergenic 50.0%
! AGTCGAAGGTTAGGGTTAGC+CGG + chr2.3:51062522-51062541 None:intergenic 50.0%
! GACGCGGATCAGGTCTTTTA+TGG + chr2.3:51063701-51063720 None:intergenic 50.0%
! GCGGATCAGGTCTTTTATGG+TGG + chr2.3:51063698-51063717 None:intergenic 50.0%
! TTCGGTGTGGTTGTCTCCAA+GGG + chr2.3:51064347-51064366 None:intergenic 50.0%
! TTTGGGTTTGTGGCTGAGGA+TGG + chr2.3:51063218-51063237 None:intergenic 50.0%
!! AGGTGTTGCTGTTGCTGTCA+TGG + chr2.3:51063547-51063566 None:intergenic 50.0%
!! GATTGGAGGGTGACTTGGTT+TGG + chr2.3:51062771-51062790 None:intergenic 50.0%
!! GGTGTTGCTGTTGCTGTCAT+GGG + chr2.3:51063546-51063565 None:intergenic 50.0%
AACCCTCTGATGAGCCACGA+AGG + chr2.3:51064105-51064124 None:intergenic 55.0%
AAGCAACGCTCCAATGGCAG+CGG - chr2.3:51063152-51063171 MS.gene037049:intron 55.0%
ACCCTCTGATGAGCCACGAA+GGG + chr2.3:51064104-51064123 None:intergenic 55.0%
CACTGCTGAGCATCTAGCTG+AGG - chr2.3:51063442-51063461 MS.gene037049:intron 55.0%
CAGCGGCGTTCACAAGCTAA+GGG - chr2.3:51063169-51063188 MS.gene037049:intron 55.0%
CATGTCCACGACCTACCTAC+AGG - chr2.3:51062807-51062826 MS.gene037049:intron 55.0%
CCGGTTTATAGACGCGGATC+AGG + chr2.3:51063711-51063730 None:intergenic 55.0%
CTCGTCGTCAGATAAGAGGG+GGG - chr2.3:51064068-51064087 MS.gene037049:intron 55.0%
CTGTAGGTAGGTCGTGGACA+TGG + chr2.3:51062809-51062828 None:intergenic 55.0%
GGACAGATTGGAGGGTGACT+TGG + chr2.3:51062776-51062795 None:intergenic 55.0%
GGCGTTCACAAGCTAAGGGA+CGG - chr2.3:51063173-51063192 MS.gene037049:intron 55.0%
GGCTGTGGGAGTGGAATATC+AGG + chr2.3:51062501-51062520 None:intergenic 55.0%
GTGTGGTTGTCTCCAAGGGA+GGG + chr2.3:51064343-51064362 None:intergenic 55.0%
GTTCACAAGCTAAGGGACGG+TGG - chr2.3:51063176-51063195 MS.gene037049:intron 55.0%
TCGTCGTCAGATAAGAGGGG+GGG - chr2.3:51064069-51064088 MS.gene037049:intron 55.0%
TGAGGTGAGTCAGCCACATC+AGG - chr2.3:51063460-51063479 MS.gene037049:intron 55.0%
TGCATCCTGTAGGTAGGTCG+TGG + chr2.3:51062815-51062834 None:intergenic 55.0%
TGTGGTTGTCTCCAAGGGAG+GGG + chr2.3:51064342-51064361 None:intergenic 55.0%
! ACCGTTTGGGTTTGTGGCTG+AGG + chr2.3:51063222-51063241 None:intergenic 55.0%
! CCCTCCAATCTGTCCCGTTT+TGG - chr2.3:51062781-51062800 MS.gene037049:intron 55.0%
! CTTCGGTGTGGTTGTCTCCA+AGG + chr2.3:51064348-51064367 None:intergenic 55.0%
! GCCGTTACCGTTTGGGTTTG+TGG + chr2.3:51063228-51063247 None:intergenic 55.0%
AGGACCCTAGTTTCCCCTCC+CGG + chr2.3:51062993-51063012 None:intergenic 60.0%
CAGCAACACCTCTGCCCCTA+TGG - chr2.3:51063556-51063575 MS.gene037049:CDS 60.0%
CTCTGATGAGCCACGAAGGG+CGG + chr2.3:51064101-51064120 None:intergenic 60.0%
CTTGTGAACGCCGCTGCCAT+TGG + chr2.3:51063165-51063184 None:intergenic 60.0%
GCAGCGGCGTTCACAAGCTA+AGG - chr2.3:51063168-51063187 MS.gene037049:intron 60.0%
GCCCTTCGTGGCTCATCAGA+GGG - chr2.3:51064100-51064119 MS.gene037049:intron 60.0%
GGTGTGGTTGTCTCCAAGGG+AGG + chr2.3:51064344-51064363 None:intergenic 60.0%
TCTTGGAACTGCCGAGGCCT+TGG - chr2.3:51063655-51063674 MS.gene037049:CDS 60.0%
! AGCTCGACTTGATAGGGCGC+TGG - chr2.3:51064221-51064240 MS.gene037049:intron 60.0%
!! AGGTTAGGGTTAGCCGGCTG+TGG + chr2.3:51062516-51062535 None:intergenic 60.0%
!! GGTTAGGGTTAGCCGGCTGT+GGG + chr2.3:51062515-51062534 None:intergenic 60.0%
AGCTGCCGGGAGGGGAAACT+AGG - chr2.3:51062985-51063004 MS.gene037049:intron 65.0%
ATGAGCCACGAAGGGCGGTC+AGG + chr2.3:51064096-51064115 None:intergenic 65.0%
CGCCCTTCGTGGCTCATCAG+AGG - chr2.3:51064099-51064118 MS.gene037049:intron 65.0%
GCTGCCGGGAGGGGAAACTA+GGG - chr2.3:51062986-51063005 MS.gene037049:intron 65.0%
! ATTGGTGGCACCTGGCTCCC+AGG - chr2.3:51063607-51063626 MS.gene037049:CDS 65.0%
!! GGGCGCTGGTTACCTCCTCA+TGG - chr2.3:51064235-51064254 MS.gene037049:intron 65.0%
TCATTGCTCCCGGCGGGCCT+GGG + chr2.3:51063627-51063646 None:intergenic 70.0%
TTCATTGCTCCCGGCGGGCC+TGG + chr2.3:51063628-51063647 None:intergenic 70.0%
!! GGGTTAGCCGGCTGTGGGAG+TGG + chr2.3:51062510-51062529 None:intergenic 70.0%
GGGGTCCTGACCGCCCTTCG+TGG - chr2.3:51064088-51064107 MS.gene037049:intron 75.0%
! ACCTGGCTCCCAGGCCCGCC+GGG - chr2.3:51063616-51063635 MS.gene037049:CDS 80.0%
! CACCTGGCTCCCAGGCCCGC+CGG - chr2.3:51063615-51063634 MS.gene037049:CDS 80.0%
! TCCCGGCGGGCCTGGGAGCC+AGG + chr2.3:51063620-51063639 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 51062441 51064600 51062441 ID=MS.gene037049
chr2.3 mRNA 51062441 51064600 51062441 ID=MS.gene037049.t1;Parent=MS.gene037049
chr2.3 exon 51064265 51064600 51064265 ID=MS.gene037049.t1.exon1;Parent=MS.gene037049.t1
chr2.3 CDS 51064265 51064600 51064265 ID=cds.MS.gene037049.t1;Parent=MS.gene037049.t1
chr2.3 exon 51063544 51063910 51063544 ID=MS.gene037049.t1.exon2;Parent=MS.gene037049.t1
chr2.3 CDS 51063544 51063910 51063544 ID=cds.MS.gene037049.t1;Parent=MS.gene037049.t1
chr2.3 exon 51062441 51062538 51062441 ID=MS.gene037049.t1.exon3;Parent=MS.gene037049.t1
chr2.3 CDS 51062441 51062538 51062441 ID=cds.MS.gene037049.t1;Parent=MS.gene037049.t1
Gene Sequence

>MS.gene037049

ATGGCCTCTCTTCAACAACTCTTCTTGAGTGAAGAGGAGGAAGAACTTGAAATCTTACCTGATATTCCACTCCCACAGCCGGCTAACCCTAACCTTCGACTCATTGGTCGTTTCCTTACTAATCGCCCGATTCGAAACTACATGATGATGGAGAAGATAGAAACATTATGGAATCCTCTCCGTGGTATCAAAATAGAGGAAATCGAACCAGGCCTATTTTCATTTCAATTTTTCCACCACTTAGATCTTCAAAGAATCCTCAAGAAGGGTCCATGGTACTTTGATAATCACCTTCTGATTCTAGATGTTCTCCCCGAAAACTATGCACCAAACCAAGTCACCCTCCAATCTGTCCCGTTTTGGATCCATGTCCACGACCTACCTACAGGATGCATGTCTGAGAAAGTAGGGAAAGACATTGCAAACTTTATTGGTGAATTCCTTGAGTATGATGCCAAGAACAACTCAAACTATCTCCGCTTATATATGAAAATTCGAGTCCTGCTGGATGTTGGAAAACCATTGAAACGCATGAAAAAAATTAAGCTGCCGGGAGGGGAAACTAGGGTCCTCAAATTCAAATATGAGCTTCTAGGCAACTTCTGTTACTTTTGTGGCTTGCTGGGCCACATAGAAGACTATTGCGAGAAGCTGTATTCGATTGATTCAGATGATGGAATCAGATTATAGGGGCCGGATTTGCGTGTTGACAAGCAACGCTCCAATGGCAGCGGCGTTCACAAGCTAAGGGACGGTGGAGCTTCTGTTTCAGTTCCATCCTCAGCCACAAACCCAAACGGTAACGGCAATTCTGTAACTGTCCAATCAAAGGCAGCAGACGCAAAGATGCTTGCAAATCTGTTACGTAACCCGCACTTAATGCGCCAGTCAACAAACATAAATGTGTCAGGTACAAATCAGATTAATGAGGAGACAATATTAGAGGAAAATAATGAGGCTATCATTGGCAGCAAACTGAAACGGTCAAGAGAGTTAAATGACACTGCTGAGCATCTAGCTGAGGTGAGTCAGCCACATCAGGTAACTGCTGATGTCAGTAATCCGAAATCCACCCATGACAACAACATCATCTCTCAGCTCTCCCATGACAGCAACAGCAACACCTCTGCCCCTATGGAGATCAATCAAATACCCAAGTATTTTTTATTGGTGGCACCTGGCTCCCAGGCCCGCCGGGAGCAATGAATATCATCTCTTGGAACTGCCGAGGCCTTGGAAATGTTAAGGCAGTTCCCACCATAAAAGACCTGATCCGCGTCTATAAACCGGATATTGTAATTTTGATTGAAACACTTGTTGATGGAAATAAAATCTCTGATTTATGTTACACAGTTGGTTTTGATAATCACTTTTCTGTTGATCGAATTGGACGTAGTGGTGGGTTAGCAATTTTATGGCGAAATTCAGCAAACTGTTCACTGTTAAACTATTCGCATAACTTTATCAATATGGTTATCCAAGACCCTATCAATGGTAATTGGAGACTCACTGCCTTTTACGGCTATTCTGACTCTGGAAGACGTCGAGAATCATGGGACCTTCTTCGACAACTAAGCAGCCTTTCAAATGATTCGTGGTGTGTCATAGGCGACTTCAATGACCATCTCTCGTCGTCAGATAAGAGGGGGGGTCCTGACCGCCCTTCGTGGCTCATCAGAGGGTTTCAAAATGCAGTTCATGATTGTCGGCTTCTAGACTTACCGCTCCTTGGTTATCAATTCACATGGTTCAAAAGCATTGGTACTGATCATTCTAAAGAAGCTCGACTTGATAGGGCGCTGGTTACCTCCTCATGGCAAAGTATATTTGCAAATTCCACGTTACAAACACTGGTTGCACCTATTTCAGATCATACACCTCTTCTGTTACAATTAGAACCCCTCCCTTGGAGACAACCACACCGAAGTTTCCAATTTAACAATGACTGGCTTTTAGAACCTGACCTTATCGACCTTGTGAAGACAAATTGGGCCCAATATCCTTCCACTAATATCATTACTAAACTACAATATTGTGTGGATGATATGTCTACTTGGGGTAGGACTTCTGCTCCAAATTTTCGACATCGTATCAATAAGCTACGCGCTCAAATTGAAGACACCAGAAATGTCGCAGAAGATGCATCAGACCTGCATCTAG
Protein sequence

>MS.gene037049.t1

MASLQQLFLSEEEEELEILPDIPLPQPANPNLRLIGRFLTNRPIRNYMMMEKIETLWNPLRGIKIEEIEPGLFSFQFFHHLDLQRILKKGPWYFDNHLLILDVLPENYAPNQGPDLRVDKQRSNGSGVHKLRDGGASVSVPSSATNPNGNGNSVTVQSKAADAKMLANLLRNPHLMRQSTNINVSGTNQINEETILEENNEAIIGSKLKRSRELNDTAEHLAEVSQPHQVTADVRLLLQIFDIVSISYALKLKTPEMSQKMHQTCI