AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024522


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024522.t1 MTR_3g053920 42.086 278 93 3 1 275 1 213 4.50e-72 227
MS.gene024522.t1 MTR_2g061500 59.690 129 52 0 1 129 1 129 6.18e-52 170
MS.gene024522.t1 MTR_6g033215 34.010 197 123 3 5 199 103 294 3.17e-36 134
MS.gene024522.t1 MTR_4g103530 59.551 89 36 0 59 147 5 93 3.92e-35 128
MS.gene024522.t1 MTR_0010s0370 34.857 175 110 2 7 177 3 177 5.33e-33 122
MS.gene024522.t1 MTR_0010s0350 34.857 175 110 2 7 177 3 177 5.33e-33 122
MS.gene024522.t1 MTR_7g011710 49.550 111 47 1 55 156 1 111 7.86e-32 118
MS.gene024522.t1 MTR_1g036720 35.185 108 68 1 7 112 3 110 9.40e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024522.t1 AT2G17920 28.472 144 99 2 77 218 80 221 1.64e-15 77.0
MS.gene024522.t1 AT5G36228 26.289 194 138 3 36 226 39 230 2.46e-15 77.0
MS.gene024522.t1 AT3G57587 24.186 215 157 3 8 218 9 221 5.30e-15 76.3
MS.gene024522.t1 AT2G41590 25.946 185 133 2 36 218 39 221 1.67e-14 74.7
MS.gene024522.t1 AT5G18636 25.946 185 133 2 36 218 39 221 4.88e-14 73.2
MS.gene024522.t1 AT5G25200 25.946 185 133 2 36 218 39 221 5.20e-14 73.2
MS.gene024522.t1 AT2G02103 25.405 185 134 2 36 218 39 221 1.62e-13 72.0
MS.gene024522.t1 AT3G31430 26.573 143 97 4 75 215 175 311 7.98e-13 69.3
MS.gene024522.t1 AT2G13450 27.083 144 101 2 74 215 77 218 3.86e-12 67.8
MS.gene024522.t1 AT3G47920 27.211 147 103 2 74 218 6 150 2.03e-11 64.7

Find 125 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCATTTCAAACCTATT+CGG 0.284862 7.2:+1766516 None:intergenic
TGATTCAAATTGACGCTTGC+TGG 0.292360 7.2:+1766828 None:intergenic
GTCAAGTGTTGCTGGGGATA+TGG 0.297582 7.2:-1765947 MS.gene024522:CDS
TAAGAAGCGCAAGCGTATAA+AGG 0.310256 7.2:-1766016 MS.gene024522:CDS
ATTCTTGATCACTGCTTAAT+AGG 0.316199 7.2:-1767071 MS.gene024522:CDS
CTGTTATCTGTGTGGTCTGT+TGG 0.320720 7.2:-1766559 MS.gene024522:CDS
TGACAATTCGGTGCAGGAAA+TGG 0.331598 7.2:-1766382 MS.gene024522:CDS
CCTCCATTTCAAACCTATTC+GGG 0.344988 7.2:+1766517 None:intergenic
AAACCAGTGGTAAGGCGTTT+AGG 0.369074 7.2:-1766459 MS.gene024522:CDS
ATTTGAATCATCTGGACATA+TGG 0.369587 7.2:-1766815 MS.gene024522:CDS
AGGAACGTATGGGGCACATT+TGG 0.385591 7.2:-1767007 MS.gene024522:CDS
CTGTTAAGGTGAGGCCTTGA+AGG 0.386785 7.2:+1767141 None:intergenic
GATGTAGTGTCAAGTGTTGC+TGG 0.386829 7.2:-1765955 MS.gene024522:CDS
GCTGCTGGAAACTTAGCTGC+TGG 0.387581 7.2:-1766345 MS.gene024522:CDS
TGTTATCTGTGTGGTCTGTT+GGG 0.391407 7.2:-1766558 MS.gene024522:CDS
TTGTCACGTTGTAGTCTTTG+TGG 0.398984 7.2:+1766399 None:intergenic
AGAACTATGATGAGTATTCC+TGG 0.400055 7.2:+1766701 None:intergenic
GTCTCTGCCGCGACTCACTA+TGG 0.400702 7.2:-1766163 MS.gene024522:CDS
AGCTGATTGAATTTGATTCC+AGG 0.403992 7.2:-1766719 MS.gene024522:CDS
AGGTCCTGGAGGAGGGGCCG+TGG 0.406456 7.2:-1766902 MS.gene024522:CDS
GTCGCGGCAGAGACAGAGTT+TGG 0.408159 7.2:+1766172 None:intergenic
GATTCGTTTCAATTACTTCA+AGG 0.410002 7.2:-1767027 MS.gene024522:CDS
TTATACGCTTGCGCTTCTTA+AGG 0.420511 7.2:+1766019 None:intergenic
AGTTTAAGTATGAAAAGCTT+GGG 0.420862 7.2:-1766587 MS.gene024522:CDS
AGTCAATCCTTCATCTGTTA+AGG 0.421004 7.2:+1767127 None:intergenic
CTGACAAGACCTGCCCGAAT+AGG 0.423285 7.2:-1766530 MS.gene024522:CDS
GCTTGACGCTGCAAAGGTCC+TGG 0.425447 7.2:-1766916 MS.gene024522:CDS
CGCTGCAAAGGTCCTGGAGG+AGG 0.427387 7.2:-1766910 MS.gene024522:CDS
GACAATTCGGTGCAGGAAAT+GGG 0.428261 7.2:-1766381 MS.gene024522:CDS
CGTCAAGCCGGTGATGGAAT+TGG 0.429537 7.2:+1766931 None:intergenic
GCTATGTCAGGTGTTTCTAC+AGG 0.430883 7.2:-1766102 MS.gene024522:CDS
AGCGCAAGAACGAGTGGATT+AGG 0.435665 7.2:+1766129 None:intergenic
CAGGTGCATCAACTACCATT+TGG 0.437332 7.2:-1766789 MS.gene024522:CDS
AGAGCCACGGCCCCTCCTCC+AGG 0.445767 7.2:+1766898 None:intergenic
AGGTGAGGCCTTGAAGGTTA+AGG 0.446133 7.2:+1767147 None:intergenic
TGAAGGATTGACTCTCAATC+TGG 0.446501 7.2:-1767117 MS.gene024522:CDS
GGTCAACATGTTTCTGCTGC+TGG 0.446617 7.2:-1766360 MS.gene024522:CDS
CAATTACTTCAAGGAACGTA+TGG 0.447480 7.2:-1767018 MS.gene024522:CDS
CGTTGTAGTCTTTGTGGGAT+AGG 0.452092 7.2:+1766405 None:intergenic
AAGCGTCAATTTGAATCATC+TGG 0.454920 7.2:-1766823 MS.gene024522:CDS
ACTGCTGACCTTAACCTTCA+AGG 0.458508 7.2:-1767155 MS.gene024522:CDS
TGTCACGTTGTAGTCTTTGT+GGG 0.459090 7.2:+1766400 None:intergenic
AAGAAGCGCAAGCGTATAAA+GGG 0.462842 7.2:-1766015 MS.gene024522:CDS
TTCTGTACCAATTCCATCAC+CGG 0.463057 7.2:-1766938 MS.gene024522:CDS
CCTCGTGTGGGCAATGGAAT+CGG 0.468059 7.2:-1766756 MS.gene024522:CDS
TCAAGTGTTGCTGGGGATAT+GGG 0.469433 7.2:-1765946 MS.gene024522:CDS
TCAGAAAAGTGGGCGCTGGC+AGG 0.469456 7.2:-1766318 MS.gene024522:intron
AAGACTACAACGTGACAATT+CGG 0.471342 7.2:-1766394 MS.gene024522:CDS
CTGCCCGAATAGGTTTGAAA+TGG 0.473016 7.2:-1766520 MS.gene024522:CDS
CTGCTGGAAACTTAGCTGCT+GGG 0.473596 7.2:-1766344 MS.gene024522:CDS
TTTGAATCATCTGGACATAT+GGG 0.486363 7.2:-1766814 MS.gene024522:CDS
ATGGGGCACATTTGGAGGCC+AGG 0.491171 7.2:-1766999 MS.gene024522:CDS
GGTACTGATGTTAGTAATGG+AGG 0.500043 7.2:-1765910 MS.gene024522:CDS
GTACGGCTGCTACAAACATC+TGG 0.501396 7.2:-1766437 MS.gene024522:CDS
ATGTAGTGTCAAGTGTTGCT+GGG 0.501530 7.2:-1765954 MS.gene024522:CDS
CGAGGTTGATTCAAACCAAA+TGG 0.503354 7.2:+1766774 None:intergenic
ACGCTTGCTGGAACAACTCC+AGG 0.505536 7.2:+1766840 None:intergenic
CAGTTTAAGTATGAAAAGCT+TGG 0.505746 7.2:-1766588 MS.gene024522:CDS
CTTGCGCTACCAGCTATGTC+AGG 0.506354 7.2:-1766114 MS.gene024522:CDS
TGCTACAAACATCTGGCTGC+AGG 0.507028 7.2:-1766430 MS.gene024522:CDS
AATCAACCTCGTGTGGGCAA+TGG 0.507074 7.2:-1766762 MS.gene024522:CDS
AACGTATGGGGCACATTTGG+AGG 0.508991 7.2:-1767004 MS.gene024522:CDS
GGCCTCACCTTAACAGATGA+AGG 0.509460 7.2:-1767134 MS.gene024522:CDS
TGCTGGGCCATCAGAAAAGT+GGG 0.510189 7.2:-1766328 MS.gene024522:CDS
TTGCAGCGTCAAGCCGGTGA+TGG 0.511141 7.2:+1766925 None:intergenic
CTATGTCAGGTGTTTCTACA+GGG 0.516900 7.2:-1766101 MS.gene024522:CDS
AGAGTTTGGTTTGTTCCGCT+TGG 0.517520 7.2:+1766186 None:intergenic
CATTTCAAACCTATTCGGGC+AGG 0.517796 7.2:+1766521 None:intergenic
TGGTTTGAATCAACCTCGTG+TGG 0.522978 7.2:-1766769 MS.gene024522:CDS
GCTGCAAAGGTCCTGGAGGA+GGG 0.523944 7.2:-1766909 MS.gene024522:CDS
CTTAAACTGCATTGTCGCAT+AGG 0.529353 7.2:+1766602 None:intergenic
ATCTGCCATTCTTGTTTCAG+AGG 0.529692 7.2:+1766642 None:intergenic
CTGTACCTCTGAAACAAGAA+TGG 0.531454 7.2:-1766647 MS.gene024522:CDS
CTGCTGGGCCATCAGAAAAG+TGG 0.537024 7.2:-1766329 MS.gene024522:CDS
GCCATCAGAAAAGTGGGCGC+TGG 0.538241 7.2:-1766322 MS.gene024522:CDS
GTGGTGGAACGTATTGCTCC+TGG 0.539348 7.2:-1766858 MS.gene024522:CDS
AATTACTTCAAGGAACGTAT+GGG 0.540598 7.2:-1767017 MS.gene024522:CDS
GTGATGGTAACACGTTTCCC+TGG 0.544874 7.2:+1766981 None:intergenic
GTAGAAACACCTGACATAGC+TGG 0.551635 7.2:+1766105 None:intergenic
AATGGAATCGGTAAGTATCT+CGG 0.552095 7.2:-1766744 MS.gene024522:CDS
GTACCTAAACGCCTTACCAC+TGG 0.552187 7.2:+1766456 None:intergenic
GGACAACGATATACGTGGAT+GGG 0.556942 7.2:-1766493 MS.gene024522:CDS
CCCGAATAGGTTTGAAATGG+AGG 0.558785 7.2:-1766517 MS.gene024522:CDS
TCACCGGCTTGACGCTGCAA+AGG 0.561928 7.2:-1766922 MS.gene024522:CDS
GGACCTTTGCAGCGTCAAGC+CGG 0.566508 7.2:+1766919 None:intergenic
TGGGGCACATTTGGAGGCCA+GGG 0.566827 7.2:-1766998 MS.gene024522:CDS
AATGGCTGAAACCAGTGGTA+AGG 0.570704 7.2:-1766467 MS.gene024522:CDS
GACAACGATATACGTGGATG+GGG 0.577292 7.2:-1766492 MS.gene024522:CDS
ATCAGGTTCAGCTTGGGTGA+TGG 0.578837 7.2:+1766965 None:intergenic
GTACTGATGTTAGTAATGGA+GGG 0.579432 7.2:-1765909 MS.gene024522:CDS
CTCATCATAGTTCTTATATG+CGG 0.580565 7.2:-1766692 MS.gene024522:CDS
ACAACGTGACAATTCGGTGC+AGG 0.583749 7.2:-1766388 MS.gene024522:CDS
GTAGGTACTGATGTTAGTAA+TGG 0.590121 7.2:-1765913 MS.gene024522:CDS
TCATCTGGACATATGGGTGC+AGG 0.592215 7.2:-1766808 MS.gene024522:CDS
TGATAACTACAACATGGTGG+TGG 0.594242 7.2:-1766874 MS.gene024522:CDS
CCGATTCCATTGCCCACACG+AGG 0.595212 7.2:+1766756 None:intergenic
ACAACGATATACGTGGATGG+GGG 0.595348 7.2:-1766491 MS.gene024522:CDS
AGTGGTAAGGCGTTTAGGTA+CGG 0.596678 7.2:-1766454 MS.gene024522:CDS
CAACGATATACGTGGATGGG+GGG 0.601853 7.2:-1766490 MS.gene024522:CDS
CTGCAAAGGTCCTGGAGGAG+GGG 0.601917 7.2:-1766908 MS.gene024522:CDS
TAACTCTTCTGCTACTGCTG+TGG 0.602863 7.2:-1766073 MS.gene024522:CDS
AGGACAACGATATACGTGGA+TGG 0.610109 7.2:-1766494 MS.gene024522:CDS
GGTTTGAATCAACCTCGTGT+GGG 0.610822 7.2:-1766768 MS.gene024522:CDS
GTTAAGGTCAGCAGTAGACA+TGG 0.613037 7.2:+1767163 None:intergenic
GATATGGGAAAATTTGCTGT+AGG 0.614030 7.2:-1765931 MS.gene024522:CDS
GAATAGGTTTGAAATGGAGG+AGG 0.616184 7.2:-1766514 MS.gene024522:CDS
GCTGGTAGCGCAAGAACGAG+TGG 0.620176 7.2:+1766123 None:intergenic
ATCCTTCATCTGTTAAGGTG+AGG 0.620666 7.2:+1767132 None:intergenic
AAGAATTTGAGTAGCATCAG+TGG 0.622026 7.2:+1767088 None:intergenic
GGGGTGTTCTGTTATCTGTG+TGG 0.635538 7.2:-1766567 MS.gene024522:CDS
TGGCAGATTCGAGTGAATGA+CGG 0.637045 7.2:-1766627 MS.gene024522:CDS
ACAGATGTGGCTTCACCAAG+CGG 0.646811 7.2:-1766201 MS.gene024522:intron
ATGTCAGGTGTTTCTACAGG+GGG 0.648528 7.2:-1766099 MS.gene024522:CDS
ATTACTTCAAGGAACGTATG+GGG 0.652023 7.2:-1767016 MS.gene024522:CDS
TACTGCTGTGGACGACAATG+AGG 0.655338 7.2:-1766061 MS.gene024522:CDS
TGACGCTGCAAAGGTCCTGG+AGG 0.664164 7.2:-1766913 MS.gene024522:CDS
TGAGTCTCCATAGTGAGTCG+CGG 0.674256 7.2:+1766156 None:intergenic
TTGTAGTTATCATAGAGCCA+CGG 0.675083 7.2:+1766885 None:intergenic
GTTTAAGTATGAAAAGCTTG+GGG 0.676485 7.2:-1766586 MS.gene024522:CDS
TGTAGTGTCAAGTGTTGCTG+GGG 0.700918 7.2:-1765953 MS.gene024522:CDS
TATGTCAGGTGTTTCTACAG+GGG 0.704600 7.2:-1766100 MS.gene024522:CDS
GCTCTATGATAACTACAACA+TGG 0.711588 7.2:-1766880 MS.gene024522:CDS
CTATGATAACTACAACATGG+TGG 0.722488 7.2:-1766877 MS.gene024522:CDS
GAGGAGGACAACGATATACG+TGG 0.733300 7.2:-1766498 MS.gene024522:CDS
CGACAATGAGGATGTCACTG+TGG 0.777920 7.2:-1766049 MS.gene024522:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATAGAGAATTAAGT+TGG + chr7.2:1766823-1766842 None:intergenic 20.0%
!!! TTCTATAAAGTCTCATATTT+TGG - chr7.2:1766793-1766812 MS.gene024522:CDS 20.0%
!!! TTTTGATAGAGAATTAAGTT+GGG + chr7.2:1766822-1766841 None:intergenic 20.0%
! AATTGGTACAGAAAAAAATC+AGG + chr7.2:1766113-1766132 None:intergenic 25.0%
! AGTTTAAGTATGAAAAGCTT+GGG - chr7.2:1766471-1766490 MS.gene024522:CDS 25.0%
AAAAAAATCAGGTTCAGCTT+GGG + chr7.2:1766102-1766121 None:intergenic 30.0%
AATTACTTCAAGGAACGTAT+GGG - chr7.2:1766041-1766060 MS.gene024522:CDS 30.0%
ATTCTTGATCACTGCTTAAT+AGG - chr7.2:1765987-1766006 MS.gene024522:CDS 30.0%
ATTTGAATCATCTGGACATA+TGG - chr7.2:1766243-1766262 MS.gene024522:intron 30.0%
CAGTTTAAGTATGAAAAGCT+TGG - chr7.2:1766470-1766489 MS.gene024522:CDS 30.0%
CTCATCATAGTTCTTATATG+CGG - chr7.2:1766366-1766385 MS.gene024522:CDS 30.0%
GATTCGTTTCAATTACTTCA+AGG - chr7.2:1766031-1766050 MS.gene024522:CDS 30.0%
GTTTAAGTATGAAAAGCTTG+GGG - chr7.2:1766472-1766491 MS.gene024522:CDS 30.0%
TTTGAATCATCTGGACATAT+GGG - chr7.2:1766244-1766263 MS.gene024522:intron 30.0%
AAGAATTTGAGTAGCATCAG+TGG + chr7.2:1765973-1765992 None:intergenic 35.0%
AAGACTACAACGTGACAATT+CGG - chr7.2:1766664-1766683 MS.gene024522:CDS 35.0%
AAGCGTCAATTTGAATCATC+TGG - chr7.2:1766235-1766254 MS.gene024522:intron 35.0%
AAGTAAGTCTTTGACAGATG+TGG - chr7.2:1766844-1766863 MS.gene024522:CDS 35.0%
AATGGAATCGGTAAGTATCT+CGG - chr7.2:1766314-1766333 MS.gene024522:intron 35.0%
AGAACTATGATGAGTATTCC+TGG + chr7.2:1766360-1766379 None:intergenic 35.0%
AGCTGATTGAATTTGATTCC+AGG - chr7.2:1766339-1766358 MS.gene024522:CDS 35.0%
AGTCAATCCTTCATCTGTTA+AGG + chr7.2:1765934-1765953 None:intergenic 35.0%
ATTACTTCAAGGAACGTATG+GGG - chr7.2:1766042-1766061 MS.gene024522:CDS 35.0%
CAATTACTTCAAGGAACGTA+TGG - chr7.2:1766040-1766059 MS.gene024522:CDS 35.0%
CTATGATAACTACAACATGG+TGG - chr7.2:1766181-1766200 MS.gene024522:CDS 35.0%
GAAAAAAATCAGGTTCAGCT+TGG + chr7.2:1766103-1766122 None:intergenic 35.0%
GCTCTATGATAACTACAACA+TGG - chr7.2:1766178-1766197 MS.gene024522:CDS 35.0%
TCCTCCATTTCAAACCTATT+CGG + chr7.2:1766545-1766564 None:intergenic 35.0%
TTGTAGTTATCATAGAGCCA+CGG + chr7.2:1766176-1766195 None:intergenic 35.0%
! GTACTGATGTTAGTAATGGA+GGG - chr7.2:1767149-1767168 MS.gene024522:CDS 35.0%
!! GATATGGGAAAATTTGCTGT+AGG - chr7.2:1767127-1767146 MS.gene024522:CDS 35.0%
!! GTAGGTACTGATGTTAGTAA+TGG - chr7.2:1767145-1767164 MS.gene024522:CDS 35.0%
ATCCTTCATCTGTTAAGGTG+AGG + chr7.2:1765929-1765948 None:intergenic 40.0%
CCTCCATTTCAAACCTATTC+GGG + chr7.2:1766544-1766563 None:intergenic 40.0%
CTTAAACTGCATTGTCGCAT+AGG + chr7.2:1766459-1766478 None:intergenic 40.0%
TGATAACTACAACATGGTGG+TGG - chr7.2:1766184-1766203 MS.gene024522:CDS 40.0%
TGATTCAAATTGACGCTTGC+TGG + chr7.2:1766233-1766252 None:intergenic 40.0%
TGTCACGTTGTAGTCTTTGT+GGG + chr7.2:1766661-1766680 None:intergenic 40.0%
TGTTATCTGTGTGGTCTGTT+GGG - chr7.2:1766500-1766519 MS.gene024522:CDS 40.0%
TTATACGCTTGCGCTTCTTA+AGG + chr7.2:1767042-1767061 None:intergenic 40.0%
TTCTGTACCAATTCCATCAC+CGG - chr7.2:1766120-1766139 MS.gene024522:CDS 40.0%
TTGTCACGTTGTAGTCTTTG+TGG + chr7.2:1766662-1766681 None:intergenic 40.0%
! AAGAAGCGCAAGCGTATAAA+GGG - chr7.2:1767043-1767062 MS.gene024522:CDS 40.0%
! ATCTGCCATTCTTGTTTCAG+AGG + chr7.2:1766419-1766438 None:intergenic 40.0%
! ATGTAGTGTCAAGTGTTGCT+GGG - chr7.2:1767104-1767123 MS.gene024522:CDS 40.0%
! CGAGGTTGATTCAAACCAAA+TGG + chr7.2:1766287-1766306 None:intergenic 40.0%
! CTATGTCAGGTGTTTCTACA+GGG - chr7.2:1766957-1766976 MS.gene024522:CDS 40.0%
! GAATAGGTTTGAAATGGAGG+AGG - chr7.2:1766544-1766563 MS.gene024522:CDS 40.0%
! TAAGAAGCGCAAGCGTATAA+AGG - chr7.2:1767042-1767061 MS.gene024522:CDS 40.0%
! TATGTCAGGTGTTTCTACAG+GGG - chr7.2:1766958-1766977 MS.gene024522:CDS 40.0%
! TGAAGGATTGACTCTCAATC+TGG - chr7.2:1765941-1765960 MS.gene024522:CDS 40.0%
!! CTGTACCTCTGAAACAAGAA+TGG - chr7.2:1766411-1766430 MS.gene024522:CDS 40.0%
!! GGTACTGATGTTAGTAATGG+AGG - chr7.2:1767148-1767167 MS.gene024522:CDS 40.0%
AATGGCTGAAACCAGTGGTA+AGG - chr7.2:1766591-1766610 MS.gene024522:CDS 45.0%
ACAACGATATACGTGGATGG+GGG - chr7.2:1766567-1766586 MS.gene024522:CDS 45.0%
ACTGCTGACCTTAACCTTCA+AGG - chr7.2:1765903-1765922 MS.gene024522:CDS 45.0%
AGGACAACGATATACGTGGA+TGG - chr7.2:1766564-1766583 MS.gene024522:CDS 45.0%
CAGGTGCATCAACTACCATT+TGG - chr7.2:1766269-1766288 MS.gene024522:intron 45.0%
CATTTCAAACCTATTCGGGC+AGG + chr7.2:1766540-1766559 None:intergenic 45.0%
CGTTGTAGTCTTTGTGGGAT+AGG + chr7.2:1766656-1766675 None:intergenic 45.0%
CTGCCCGAATAGGTTTGAAA+TGG - chr7.2:1766538-1766557 MS.gene024522:CDS 45.0%
CTGTTATCTGTGTGGTCTGT+TGG - chr7.2:1766499-1766518 MS.gene024522:CDS 45.0%
GACAACGATATACGTGGATG+GGG - chr7.2:1766566-1766585 MS.gene024522:CDS 45.0%
GGACAACGATATACGTGGAT+GGG - chr7.2:1766565-1766584 MS.gene024522:CDS 45.0%
GGTTTGAATCAACCTCGTGT+GGG - chr7.2:1766290-1766309 MS.gene024522:intron 45.0%
GTAGAAACACCTGACATAGC+TGG + chr7.2:1766956-1766975 None:intergenic 45.0%
TAACTCTTCTGCTACTGCTG+TGG - chr7.2:1766985-1767004 MS.gene024522:CDS 45.0%
TGGCAGATTCGAGTGAATGA+CGG - chr7.2:1766431-1766450 MS.gene024522:CDS 45.0%
TGGTTTGAATCAACCTCGTG+TGG - chr7.2:1766289-1766308 MS.gene024522:intron 45.0%
! AAACCAGTGGTAAGGCGTTT+AGG - chr7.2:1766599-1766618 MS.gene024522:CDS 45.0%
! AGTGGTAAGGCGTTTAGGTA+CGG - chr7.2:1766604-1766623 MS.gene024522:CDS 45.0%
! ATGTCAGGTGTTTCTACAGG+GGG - chr7.2:1766959-1766978 MS.gene024522:CDS 45.0%
! CCCGAATAGGTTTGAAATGG+AGG - chr7.2:1766541-1766560 MS.gene024522:CDS 45.0%
! GATGTAGTGTCAAGTGTTGC+TGG - chr7.2:1767103-1767122 MS.gene024522:CDS 45.0%
! GCTATGTCAGGTGTTTCTAC+AGG - chr7.2:1766956-1766975 MS.gene024522:CDS 45.0%
! TCAAGTGTTGCTGGGGATAT+GGG - chr7.2:1767112-1767131 MS.gene024522:CDS 45.0%
! TGTAGTGTCAAGTGTTGCTG+GGG - chr7.2:1767105-1767124 MS.gene024522:CDS 45.0%
!! AGAGTTTGGTTTGTTCCGCT+TGG + chr7.2:1766875-1766894 None:intergenic 45.0%
!! GACAATTCGGTGCAGGAAAT+GGG - chr7.2:1766677-1766696 MS.gene024522:CDS 45.0%
!! TGACAATTCGGTGCAGGAAA+TGG - chr7.2:1766676-1766695 MS.gene024522:CDS 45.0%
AACGTATGGGGCACATTTGG+AGG - chr7.2:1766054-1766073 MS.gene024522:CDS 50.0%
AATCAACCTCGTGTGGGCAA+TGG - chr7.2:1766296-1766315 MS.gene024522:intron 50.0%
ACAGATGTGGCTTCACCAAG+CGG - chr7.2:1766857-1766876 MS.gene024522:CDS 50.0%
AGGAACGTATGGGGCACATT+TGG - chr7.2:1766051-1766070 MS.gene024522:CDS 50.0%
AGGTGAGGCCTTGAAGGTTA+AGG + chr7.2:1765914-1765933 None:intergenic 50.0%
ATATACGTGGATGGGGGGAA+TGG - chr7.2:1766573-1766592 MS.gene024522:CDS 50.0%
ATCAGGTTCAGCTTGGGTGA+TGG + chr7.2:1766096-1766115 None:intergenic 50.0%
CAACGATATACGTGGATGGG+GGG - chr7.2:1766568-1766587 MS.gene024522:CDS 50.0%
CGACAATGAGGATGTCACTG+TGG - chr7.2:1767009-1767028 MS.gene024522:CDS 50.0%
CTGCTGGAAACTTAGCTGCT+GGG - chr7.2:1766714-1766733 MS.gene024522:CDS 50.0%
CTGTTAAGGTGAGGCCTTGA+AGG + chr7.2:1765920-1765939 None:intergenic 50.0%
GAGGAGGACAACGATATACG+TGG - chr7.2:1766560-1766579 MS.gene024522:CDS 50.0%
GGCCTCACCTTAACAGATGA+AGG - chr7.2:1765924-1765943 MS.gene024522:CDS 50.0%
GTACCTAAACGCCTTACCAC+TGG + chr7.2:1766605-1766624 None:intergenic 50.0%
GTACGGCTGCTACAAACATC+TGG - chr7.2:1766621-1766640 MS.gene024522:CDS 50.0%
GTGATGGTAACACGTTTCCC+TGG + chr7.2:1766080-1766099 None:intergenic 50.0%
TACTGCTGTGGACGACAATG+AGG - chr7.2:1766997-1767016 MS.gene024522:CDS 50.0%
TCATCTGGACATATGGGTGC+AGG - chr7.2:1766250-1766269 MS.gene024522:intron 50.0%
TGAGTCTCCATAGTGAGTCG+CGG + chr7.2:1766905-1766924 None:intergenic 50.0%
TGCTACAAACATCTGGCTGC+AGG - chr7.2:1766628-1766647 MS.gene024522:CDS 50.0%
TGCTGGGCCATCAGAAAAGT+GGG - chr7.2:1766730-1766749 MS.gene024522:CDS 50.0%
! AGCGCAAGAACGAGTGGATT+AGG + chr7.2:1766932-1766951 None:intergenic 50.0%
! GGGGTGTTCTGTTATCTGTG+TGG - chr7.2:1766491-1766510 MS.gene024522:CDS 50.0%
! GGTCAACATGTTTCTGCTGC+TGG - chr7.2:1766698-1766717 MS.gene024522:CDS 50.0%
! GTCAAGTGTTGCTGGGGATA+TGG - chr7.2:1767111-1767130 MS.gene024522:CDS 50.0%
!! ACAACGTGACAATTCGGTGC+AGG - chr7.2:1766670-1766689 MS.gene024522:CDS 50.0%
CCTCGTGTGGGCAATGGAAT+CGG - chr7.2:1766302-1766321 MS.gene024522:intron 55.0%
CTGACAAGACCTGCCCGAAT+AGG - chr7.2:1766528-1766547 MS.gene024522:CDS 55.0%
CTGCTGGGCCATCAGAAAAG+TGG - chr7.2:1766729-1766748 MS.gene024522:CDS 55.0%
CTTGCGCTACCAGCTATGTC+AGG - chr7.2:1766944-1766963 MS.gene024522:CDS 55.0%
GCTGCTGGAAACTTAGCTGC+TGG - chr7.2:1766713-1766732 MS.gene024522:CDS 55.0%
! ACGCTTGCTGGAACAACTCC+AGG + chr7.2:1766221-1766240 None:intergenic 55.0%
! GTGGTGGAACGTATTGCTCC+TGG - chr7.2:1766200-1766219 MS.gene024522:CDS 55.0%
!! CGTCAAGCCGGTGATGGAAT+TGG + chr7.2:1766130-1766149 None:intergenic 55.0%
ATGGGGCACATTTGGAGGCC+AGG - chr7.2:1766059-1766078 MS.gene024522:CDS 60.0%
CCGATTCCATTGCCCACACG+AGG + chr7.2:1766305-1766324 None:intergenic 60.0%
CTGCAAAGGTCCTGGAGGAG+GGG - chr7.2:1766150-1766169 MS.gene024522:CDS 60.0%
GCCATCAGAAAAGTGGGCGC+TGG - chr7.2:1766736-1766755 MS.gene024522:CDS 60.0%
GCTGCAAAGGTCCTGGAGGA+GGG - chr7.2:1766149-1766168 MS.gene024522:CDS 60.0%
GCTTGACGCTGCAAAGGTCC+TGG - chr7.2:1766142-1766161 MS.gene024522:CDS 60.0%
GGACCTTTGCAGCGTCAAGC+CGG + chr7.2:1766142-1766161 None:intergenic 60.0%
GGGGGAATGGCTGAAACCAG+TGG - chr7.2:1766586-1766605 MS.gene024522:CDS 60.0%
GTCGCGGCAGAGACAGAGTT+TGG + chr7.2:1766889-1766908 None:intergenic 60.0%
GTCTCTGCCGCGACTCACTA+TGG - chr7.2:1766895-1766914 MS.gene024522:CDS 60.0%
TGACGCTGCAAAGGTCCTGG+AGG - chr7.2:1766145-1766164 MS.gene024522:CDS 60.0%
TGGGGCACATTTGGAGGCCA+GGG - chr7.2:1766060-1766079 MS.gene024522:CDS 60.0%
TTGCAGCGTCAAGCCGGTGA+TGG + chr7.2:1766136-1766155 None:intergenic 60.0%
! GCTGGTAGCGCAAGAACGAG+TGG + chr7.2:1766938-1766957 None:intergenic 60.0%
!! GCCAGCGCCCACTTTTCTGA+TGG + chr7.2:1766740-1766759 None:intergenic 60.0%
!! TCACCGGCTTGACGCTGCAA+AGG - chr7.2:1766136-1766155 MS.gene024522:CDS 60.0%
!! TCAGAAAAGTGGGCGCTGGC+AGG - chr7.2:1766740-1766759 MS.gene024522:CDS 60.0%
CGCTGCAAAGGTCCTGGAGG+AGG - chr7.2:1766148-1766167 MS.gene024522:CDS 65.0%
AGAGCCACGGCCCCTCCTCC+AGG + chr7.2:1766163-1766182 None:intergenic 75.0%
AGGTCCTGGAGGAGGGGCCG+TGG - chr7.2:1766156-1766175 MS.gene024522:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 1765897 1767183 1765897 ID=MS.gene024522
chr7.2 mRNA 1765897 1767183 1765897 ID=MS.gene024522.t1;Parent=MS.gene024522
chr7.2 exon 1766319 1767183 1766319 ID=MS.gene024522.t1.exon1;Parent=MS.gene024522.t1
chr7.2 CDS 1766319 1767183 1766319 ID=cds.MS.gene024522.t1;Parent=MS.gene024522.t1
chr7.2 exon 1765897 1766219 1765897 ID=MS.gene024522.t1.exon2;Parent=MS.gene024522.t1
chr7.2 CDS 1765897 1766219 1765897 ID=cds.MS.gene024522.t1;Parent=MS.gene024522.t1
Gene Sequence

>MS.gene024522

ATGTCTACTGCTGACCTTAACCTTCAAGGCCTCACCTTAACAGATGAAGGATTGACTCTCAATCTGGATTCTACCACTGATGCTACTCAAATTCTTGATCACTGCTTAATAGGTCGTGTGCTCACTGACAAATTGATTCGTTTCAATTACTTCAAGGAACGTATGGGGCACATTTGGAGGCCAGGGAAACGTGTTACCATCACCCAAGCTGAACCTGATTTTTTTCTGTACCAATTCCATCACCGGCTTGACGCTGCAAAGGTCCTGGAGGAGGGGCCGTGGCTCTATGATAACTACAACATGGTGGTGGAACGTATTGCTCCTGGAGTTGTTCCAGCAAGCGTCAATTTGAATCATCTGGACATATGGGTGCAGGTGCATCAACTACCATTTGGTTTGAATCAACCTCGTGTGGGCAATGGAATCGGTAAGTATCTCGGAGAGCTGATTGAATTTGATTCCAGGAATACTCATCATAGTTCTTATATGCGGCTTAAAGTTCGAATTGATGTTACTGTACCTCTGAAACAAGAATGGCAGATTCGAGTGAATGACGGTTCCTATGCGACAATGCAGTTTAAGTATGAAAAGCTTGGGGTGTTCTGTTATCTGTGTGGTCTGTTGGGACATACTGACAAGACCTGCCCGAATAGGTTTGAAATGGAGGAGGACAACGATATACGTGGATGGGGGGAATGGCTGAAACCAGTGGTAAGGCGTTTAGGTACGGCTGCTACAAACATCTGGCTGCAGGATCCTATCCCACAAAGACTACAACGTGACAATTCGGTGCAGGAAATGGGTCAACATGTTTCTGCTGCTGGAAACTTAGCTGCTGGGCCATCAGAAAAGTGGGCGCTGGCAGGTTGAATTACTGCTGTTCATAAAGAAATTGATTCTATAAAGTCTCATATTTTGGCTGCCCAACTTAATTCTCTATCAAAATCAAGTAAGTCTTTGACAGATGTGGCTTCACCAAGCGGAACAAACCAAACTCTGTCTCTGCCGCGACTCACTATGGAGACTCAACAGCCTAATCCACTCGTTCTTGCGCTACCAGCTATGTCAGGTGTTTCTACAGGGGGAGATAACTCTTCTGCTACTGCTGTGGACGACAATGAGGATGTCACTGTGGTTTCTGACCTTAAGAAGCGCAAGCGTATAAAGGGAGCTGAAGAGAAAAACGTCAAAGAAAGTCTTGTGTTTGATGTAGTGTCAAGTGTTGCTGGGGATATGGGAAAATTTGCTGTAGGTACTGATGTTAGTAATGGAGGGATGTTGTCATGA

Protein sequence

>MS.gene024522.t1

MSTADLNLQGLTLTDEGLTLNLDSTTDATQILDHCLIGRVLTDKLIRFNYFKERMGHIWRPGKRVTITQAEPDFFLYQFHHRLDAAKVLEEGPWLYDNYNMVVERIAPGVVPASVNLNHLDIWVQVHQLPFGLNQPRVGNGIGKYLGELIEFDSRNTHHSSYMRLKVRIDVTVPLKQEWQIRVNDGSYATMQFKYEKLGVFCYLCGLLGHTDKTCPNRFEMEEDNDIRGWGEWLKPVVRRLGTAATNIWLQDPIPQRLQRDNSVQEMGQHVSAAGNLAAGPSEKWALADVASPSGTNQTLSLPRLTMETQQPNPLVLALPAMSGVSTGGDNSSATAVDDNEDVTVVSDLKKRKRIKGAEEKNVKESLVFDVVSSVAGDMGKFAVGTDVSNGGMLS