Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024522.t1 | PNX72859.1 | 43.6 | 376 | 182 | 6 | 5 | 362 | 124 | 487 | 4.20E-83 | 318.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024522.t1 | A0A2K3L2W5 | 43.6 | 376 | 182 | 6 | 5 | 362 | 124 | 487 | 3.1e-83 | 318.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024522.t1 | MTR_3g053920 | 42.086 | 278 | 93 | 3 | 1 | 275 | 1 | 213 | 4.50e-72 | 227 |
MS.gene024522.t1 | MTR_2g061500 | 59.690 | 129 | 52 | 0 | 1 | 129 | 1 | 129 | 6.18e-52 | 170 |
MS.gene024522.t1 | MTR_6g033215 | 34.010 | 197 | 123 | 3 | 5 | 199 | 103 | 294 | 3.17e-36 | 134 |
MS.gene024522.t1 | MTR_4g103530 | 59.551 | 89 | 36 | 0 | 59 | 147 | 5 | 93 | 3.92e-35 | 128 |
MS.gene024522.t1 | MTR_0010s0370 | 34.857 | 175 | 110 | 2 | 7 | 177 | 3 | 177 | 5.33e-33 | 122 |
MS.gene024522.t1 | MTR_0010s0350 | 34.857 | 175 | 110 | 2 | 7 | 177 | 3 | 177 | 5.33e-33 | 122 |
MS.gene024522.t1 | MTR_7g011710 | 49.550 | 111 | 47 | 1 | 55 | 156 | 1 | 111 | 7.86e-32 | 118 |
MS.gene024522.t1 | MTR_1g036720 | 35.185 | 108 | 68 | 1 | 7 | 112 | 3 | 110 | 9.40e-17 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024522.t1 | AT2G17920 | 28.472 | 144 | 99 | 2 | 77 | 218 | 80 | 221 | 1.64e-15 | 77.0 |
MS.gene024522.t1 | AT5G36228 | 26.289 | 194 | 138 | 3 | 36 | 226 | 39 | 230 | 2.46e-15 | 77.0 |
MS.gene024522.t1 | AT3G57587 | 24.186 | 215 | 157 | 3 | 8 | 218 | 9 | 221 | 5.30e-15 | 76.3 |
MS.gene024522.t1 | AT2G41590 | 25.946 | 185 | 133 | 2 | 36 | 218 | 39 | 221 | 1.67e-14 | 74.7 |
MS.gene024522.t1 | AT5G18636 | 25.946 | 185 | 133 | 2 | 36 | 218 | 39 | 221 | 4.88e-14 | 73.2 |
MS.gene024522.t1 | AT5G25200 | 25.946 | 185 | 133 | 2 | 36 | 218 | 39 | 221 | 5.20e-14 | 73.2 |
MS.gene024522.t1 | AT2G02103 | 25.405 | 185 | 134 | 2 | 36 | 218 | 39 | 221 | 1.62e-13 | 72.0 |
MS.gene024522.t1 | AT3G31430 | 26.573 | 143 | 97 | 4 | 75 | 215 | 175 | 311 | 7.98e-13 | 69.3 |
MS.gene024522.t1 | AT2G13450 | 27.083 | 144 | 101 | 2 | 74 | 215 | 77 | 218 | 3.86e-12 | 67.8 |
MS.gene024522.t1 | AT3G47920 | 27.211 | 147 | 103 | 2 | 74 | 218 | 6 | 150 | 2.03e-11 | 64.7 |
Find 125 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTCCATTTCAAACCTATT+CGG | 0.284862 | 7.2:+1766516 | None:intergenic |
TGATTCAAATTGACGCTTGC+TGG | 0.292360 | 7.2:+1766828 | None:intergenic |
GTCAAGTGTTGCTGGGGATA+TGG | 0.297582 | 7.2:-1765947 | MS.gene024522:CDS |
TAAGAAGCGCAAGCGTATAA+AGG | 0.310256 | 7.2:-1766016 | MS.gene024522:CDS |
ATTCTTGATCACTGCTTAAT+AGG | 0.316199 | 7.2:-1767071 | MS.gene024522:CDS |
CTGTTATCTGTGTGGTCTGT+TGG | 0.320720 | 7.2:-1766559 | MS.gene024522:CDS |
TGACAATTCGGTGCAGGAAA+TGG | 0.331598 | 7.2:-1766382 | MS.gene024522:CDS |
CCTCCATTTCAAACCTATTC+GGG | 0.344988 | 7.2:+1766517 | None:intergenic |
AAACCAGTGGTAAGGCGTTT+AGG | 0.369074 | 7.2:-1766459 | MS.gene024522:CDS |
ATTTGAATCATCTGGACATA+TGG | 0.369587 | 7.2:-1766815 | MS.gene024522:CDS |
AGGAACGTATGGGGCACATT+TGG | 0.385591 | 7.2:-1767007 | MS.gene024522:CDS |
CTGTTAAGGTGAGGCCTTGA+AGG | 0.386785 | 7.2:+1767141 | None:intergenic |
GATGTAGTGTCAAGTGTTGC+TGG | 0.386829 | 7.2:-1765955 | MS.gene024522:CDS |
GCTGCTGGAAACTTAGCTGC+TGG | 0.387581 | 7.2:-1766345 | MS.gene024522:CDS |
TGTTATCTGTGTGGTCTGTT+GGG | 0.391407 | 7.2:-1766558 | MS.gene024522:CDS |
TTGTCACGTTGTAGTCTTTG+TGG | 0.398984 | 7.2:+1766399 | None:intergenic |
AGAACTATGATGAGTATTCC+TGG | 0.400055 | 7.2:+1766701 | None:intergenic |
GTCTCTGCCGCGACTCACTA+TGG | 0.400702 | 7.2:-1766163 | MS.gene024522:CDS |
AGCTGATTGAATTTGATTCC+AGG | 0.403992 | 7.2:-1766719 | MS.gene024522:CDS |
AGGTCCTGGAGGAGGGGCCG+TGG | 0.406456 | 7.2:-1766902 | MS.gene024522:CDS |
GTCGCGGCAGAGACAGAGTT+TGG | 0.408159 | 7.2:+1766172 | None:intergenic |
GATTCGTTTCAATTACTTCA+AGG | 0.410002 | 7.2:-1767027 | MS.gene024522:CDS |
TTATACGCTTGCGCTTCTTA+AGG | 0.420511 | 7.2:+1766019 | None:intergenic |
AGTTTAAGTATGAAAAGCTT+GGG | 0.420862 | 7.2:-1766587 | MS.gene024522:CDS |
AGTCAATCCTTCATCTGTTA+AGG | 0.421004 | 7.2:+1767127 | None:intergenic |
CTGACAAGACCTGCCCGAAT+AGG | 0.423285 | 7.2:-1766530 | MS.gene024522:CDS |
GCTTGACGCTGCAAAGGTCC+TGG | 0.425447 | 7.2:-1766916 | MS.gene024522:CDS |
CGCTGCAAAGGTCCTGGAGG+AGG | 0.427387 | 7.2:-1766910 | MS.gene024522:CDS |
GACAATTCGGTGCAGGAAAT+GGG | 0.428261 | 7.2:-1766381 | MS.gene024522:CDS |
CGTCAAGCCGGTGATGGAAT+TGG | 0.429537 | 7.2:+1766931 | None:intergenic |
GCTATGTCAGGTGTTTCTAC+AGG | 0.430883 | 7.2:-1766102 | MS.gene024522:CDS |
AGCGCAAGAACGAGTGGATT+AGG | 0.435665 | 7.2:+1766129 | None:intergenic |
CAGGTGCATCAACTACCATT+TGG | 0.437332 | 7.2:-1766789 | MS.gene024522:CDS |
AGAGCCACGGCCCCTCCTCC+AGG | 0.445767 | 7.2:+1766898 | None:intergenic |
AGGTGAGGCCTTGAAGGTTA+AGG | 0.446133 | 7.2:+1767147 | None:intergenic |
TGAAGGATTGACTCTCAATC+TGG | 0.446501 | 7.2:-1767117 | MS.gene024522:CDS |
GGTCAACATGTTTCTGCTGC+TGG | 0.446617 | 7.2:-1766360 | MS.gene024522:CDS |
CAATTACTTCAAGGAACGTA+TGG | 0.447480 | 7.2:-1767018 | MS.gene024522:CDS |
CGTTGTAGTCTTTGTGGGAT+AGG | 0.452092 | 7.2:+1766405 | None:intergenic |
AAGCGTCAATTTGAATCATC+TGG | 0.454920 | 7.2:-1766823 | MS.gene024522:CDS |
ACTGCTGACCTTAACCTTCA+AGG | 0.458508 | 7.2:-1767155 | MS.gene024522:CDS |
TGTCACGTTGTAGTCTTTGT+GGG | 0.459090 | 7.2:+1766400 | None:intergenic |
AAGAAGCGCAAGCGTATAAA+GGG | 0.462842 | 7.2:-1766015 | MS.gene024522:CDS |
TTCTGTACCAATTCCATCAC+CGG | 0.463057 | 7.2:-1766938 | MS.gene024522:CDS |
CCTCGTGTGGGCAATGGAAT+CGG | 0.468059 | 7.2:-1766756 | MS.gene024522:CDS |
TCAAGTGTTGCTGGGGATAT+GGG | 0.469433 | 7.2:-1765946 | MS.gene024522:CDS |
TCAGAAAAGTGGGCGCTGGC+AGG | 0.469456 | 7.2:-1766318 | MS.gene024522:intron |
AAGACTACAACGTGACAATT+CGG | 0.471342 | 7.2:-1766394 | MS.gene024522:CDS |
CTGCCCGAATAGGTTTGAAA+TGG | 0.473016 | 7.2:-1766520 | MS.gene024522:CDS |
CTGCTGGAAACTTAGCTGCT+GGG | 0.473596 | 7.2:-1766344 | MS.gene024522:CDS |
TTTGAATCATCTGGACATAT+GGG | 0.486363 | 7.2:-1766814 | MS.gene024522:CDS |
ATGGGGCACATTTGGAGGCC+AGG | 0.491171 | 7.2:-1766999 | MS.gene024522:CDS |
GGTACTGATGTTAGTAATGG+AGG | 0.500043 | 7.2:-1765910 | MS.gene024522:CDS |
GTACGGCTGCTACAAACATC+TGG | 0.501396 | 7.2:-1766437 | MS.gene024522:CDS |
ATGTAGTGTCAAGTGTTGCT+GGG | 0.501530 | 7.2:-1765954 | MS.gene024522:CDS |
CGAGGTTGATTCAAACCAAA+TGG | 0.503354 | 7.2:+1766774 | None:intergenic |
ACGCTTGCTGGAACAACTCC+AGG | 0.505536 | 7.2:+1766840 | None:intergenic |
CAGTTTAAGTATGAAAAGCT+TGG | 0.505746 | 7.2:-1766588 | MS.gene024522:CDS |
CTTGCGCTACCAGCTATGTC+AGG | 0.506354 | 7.2:-1766114 | MS.gene024522:CDS |
TGCTACAAACATCTGGCTGC+AGG | 0.507028 | 7.2:-1766430 | MS.gene024522:CDS |
AATCAACCTCGTGTGGGCAA+TGG | 0.507074 | 7.2:-1766762 | MS.gene024522:CDS |
AACGTATGGGGCACATTTGG+AGG | 0.508991 | 7.2:-1767004 | MS.gene024522:CDS |
GGCCTCACCTTAACAGATGA+AGG | 0.509460 | 7.2:-1767134 | MS.gene024522:CDS |
TGCTGGGCCATCAGAAAAGT+GGG | 0.510189 | 7.2:-1766328 | MS.gene024522:CDS |
TTGCAGCGTCAAGCCGGTGA+TGG | 0.511141 | 7.2:+1766925 | None:intergenic |
CTATGTCAGGTGTTTCTACA+GGG | 0.516900 | 7.2:-1766101 | MS.gene024522:CDS |
AGAGTTTGGTTTGTTCCGCT+TGG | 0.517520 | 7.2:+1766186 | None:intergenic |
CATTTCAAACCTATTCGGGC+AGG | 0.517796 | 7.2:+1766521 | None:intergenic |
TGGTTTGAATCAACCTCGTG+TGG | 0.522978 | 7.2:-1766769 | MS.gene024522:CDS |
GCTGCAAAGGTCCTGGAGGA+GGG | 0.523944 | 7.2:-1766909 | MS.gene024522:CDS |
CTTAAACTGCATTGTCGCAT+AGG | 0.529353 | 7.2:+1766602 | None:intergenic |
ATCTGCCATTCTTGTTTCAG+AGG | 0.529692 | 7.2:+1766642 | None:intergenic |
CTGTACCTCTGAAACAAGAA+TGG | 0.531454 | 7.2:-1766647 | MS.gene024522:CDS |
CTGCTGGGCCATCAGAAAAG+TGG | 0.537024 | 7.2:-1766329 | MS.gene024522:CDS |
GCCATCAGAAAAGTGGGCGC+TGG | 0.538241 | 7.2:-1766322 | MS.gene024522:CDS |
GTGGTGGAACGTATTGCTCC+TGG | 0.539348 | 7.2:-1766858 | MS.gene024522:CDS |
AATTACTTCAAGGAACGTAT+GGG | 0.540598 | 7.2:-1767017 | MS.gene024522:CDS |
GTGATGGTAACACGTTTCCC+TGG | 0.544874 | 7.2:+1766981 | None:intergenic |
GTAGAAACACCTGACATAGC+TGG | 0.551635 | 7.2:+1766105 | None:intergenic |
AATGGAATCGGTAAGTATCT+CGG | 0.552095 | 7.2:-1766744 | MS.gene024522:CDS |
GTACCTAAACGCCTTACCAC+TGG | 0.552187 | 7.2:+1766456 | None:intergenic |
GGACAACGATATACGTGGAT+GGG | 0.556942 | 7.2:-1766493 | MS.gene024522:CDS |
CCCGAATAGGTTTGAAATGG+AGG | 0.558785 | 7.2:-1766517 | MS.gene024522:CDS |
TCACCGGCTTGACGCTGCAA+AGG | 0.561928 | 7.2:-1766922 | MS.gene024522:CDS |
GGACCTTTGCAGCGTCAAGC+CGG | 0.566508 | 7.2:+1766919 | None:intergenic |
TGGGGCACATTTGGAGGCCA+GGG | 0.566827 | 7.2:-1766998 | MS.gene024522:CDS |
AATGGCTGAAACCAGTGGTA+AGG | 0.570704 | 7.2:-1766467 | MS.gene024522:CDS |
GACAACGATATACGTGGATG+GGG | 0.577292 | 7.2:-1766492 | MS.gene024522:CDS |
ATCAGGTTCAGCTTGGGTGA+TGG | 0.578837 | 7.2:+1766965 | None:intergenic |
GTACTGATGTTAGTAATGGA+GGG | 0.579432 | 7.2:-1765909 | MS.gene024522:CDS |
CTCATCATAGTTCTTATATG+CGG | 0.580565 | 7.2:-1766692 | MS.gene024522:CDS |
ACAACGTGACAATTCGGTGC+AGG | 0.583749 | 7.2:-1766388 | MS.gene024522:CDS |
GTAGGTACTGATGTTAGTAA+TGG | 0.590121 | 7.2:-1765913 | MS.gene024522:CDS |
TCATCTGGACATATGGGTGC+AGG | 0.592215 | 7.2:-1766808 | MS.gene024522:CDS |
TGATAACTACAACATGGTGG+TGG | 0.594242 | 7.2:-1766874 | MS.gene024522:CDS |
CCGATTCCATTGCCCACACG+AGG | 0.595212 | 7.2:+1766756 | None:intergenic |
ACAACGATATACGTGGATGG+GGG | 0.595348 | 7.2:-1766491 | MS.gene024522:CDS |
AGTGGTAAGGCGTTTAGGTA+CGG | 0.596678 | 7.2:-1766454 | MS.gene024522:CDS |
CAACGATATACGTGGATGGG+GGG | 0.601853 | 7.2:-1766490 | MS.gene024522:CDS |
CTGCAAAGGTCCTGGAGGAG+GGG | 0.601917 | 7.2:-1766908 | MS.gene024522:CDS |
TAACTCTTCTGCTACTGCTG+TGG | 0.602863 | 7.2:-1766073 | MS.gene024522:CDS |
AGGACAACGATATACGTGGA+TGG | 0.610109 | 7.2:-1766494 | MS.gene024522:CDS |
GGTTTGAATCAACCTCGTGT+GGG | 0.610822 | 7.2:-1766768 | MS.gene024522:CDS |
GTTAAGGTCAGCAGTAGACA+TGG | 0.613037 | 7.2:+1767163 | None:intergenic |
GATATGGGAAAATTTGCTGT+AGG | 0.614030 | 7.2:-1765931 | MS.gene024522:CDS |
GAATAGGTTTGAAATGGAGG+AGG | 0.616184 | 7.2:-1766514 | MS.gene024522:CDS |
GCTGGTAGCGCAAGAACGAG+TGG | 0.620176 | 7.2:+1766123 | None:intergenic |
ATCCTTCATCTGTTAAGGTG+AGG | 0.620666 | 7.2:+1767132 | None:intergenic |
AAGAATTTGAGTAGCATCAG+TGG | 0.622026 | 7.2:+1767088 | None:intergenic |
GGGGTGTTCTGTTATCTGTG+TGG | 0.635538 | 7.2:-1766567 | MS.gene024522:CDS |
TGGCAGATTCGAGTGAATGA+CGG | 0.637045 | 7.2:-1766627 | MS.gene024522:CDS |
ACAGATGTGGCTTCACCAAG+CGG | 0.646811 | 7.2:-1766201 | MS.gene024522:intron |
ATGTCAGGTGTTTCTACAGG+GGG | 0.648528 | 7.2:-1766099 | MS.gene024522:CDS |
ATTACTTCAAGGAACGTATG+GGG | 0.652023 | 7.2:-1767016 | MS.gene024522:CDS |
TACTGCTGTGGACGACAATG+AGG | 0.655338 | 7.2:-1766061 | MS.gene024522:CDS |
TGACGCTGCAAAGGTCCTGG+AGG | 0.664164 | 7.2:-1766913 | MS.gene024522:CDS |
TGAGTCTCCATAGTGAGTCG+CGG | 0.674256 | 7.2:+1766156 | None:intergenic |
TTGTAGTTATCATAGAGCCA+CGG | 0.675083 | 7.2:+1766885 | None:intergenic |
GTTTAAGTATGAAAAGCTTG+GGG | 0.676485 | 7.2:-1766586 | MS.gene024522:CDS |
TGTAGTGTCAAGTGTTGCTG+GGG | 0.700918 | 7.2:-1765953 | MS.gene024522:CDS |
TATGTCAGGTGTTTCTACAG+GGG | 0.704600 | 7.2:-1766100 | MS.gene024522:CDS |
GCTCTATGATAACTACAACA+TGG | 0.711588 | 7.2:-1766880 | MS.gene024522:CDS |
CTATGATAACTACAACATGG+TGG | 0.722488 | 7.2:-1766877 | MS.gene024522:CDS |
GAGGAGGACAACGATATACG+TGG | 0.733300 | 7.2:-1766498 | MS.gene024522:CDS |
CGACAATGAGGATGTCACTG+TGG | 0.777920 | 7.2:-1766049 | MS.gene024522:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTGATAGAGAATTAAGT+TGG | + | chr7.2:1766823-1766842 | None:intergenic | 20.0% |
!!! | TTCTATAAAGTCTCATATTT+TGG | - | chr7.2:1766793-1766812 | MS.gene024522:CDS | 20.0% |
!!! | TTTTGATAGAGAATTAAGTT+GGG | + | chr7.2:1766822-1766841 | None:intergenic | 20.0% |
! | AATTGGTACAGAAAAAAATC+AGG | + | chr7.2:1766113-1766132 | None:intergenic | 25.0% |
! | AGTTTAAGTATGAAAAGCTT+GGG | - | chr7.2:1766471-1766490 | MS.gene024522:CDS | 25.0% |
AAAAAAATCAGGTTCAGCTT+GGG | + | chr7.2:1766102-1766121 | None:intergenic | 30.0% | |
AATTACTTCAAGGAACGTAT+GGG | - | chr7.2:1766041-1766060 | MS.gene024522:CDS | 30.0% | |
ATTCTTGATCACTGCTTAAT+AGG | - | chr7.2:1765987-1766006 | MS.gene024522:CDS | 30.0% | |
ATTTGAATCATCTGGACATA+TGG | - | chr7.2:1766243-1766262 | MS.gene024522:intron | 30.0% | |
CAGTTTAAGTATGAAAAGCT+TGG | - | chr7.2:1766470-1766489 | MS.gene024522:CDS | 30.0% | |
CTCATCATAGTTCTTATATG+CGG | - | chr7.2:1766366-1766385 | MS.gene024522:CDS | 30.0% | |
GATTCGTTTCAATTACTTCA+AGG | - | chr7.2:1766031-1766050 | MS.gene024522:CDS | 30.0% | |
GTTTAAGTATGAAAAGCTTG+GGG | - | chr7.2:1766472-1766491 | MS.gene024522:CDS | 30.0% | |
TTTGAATCATCTGGACATAT+GGG | - | chr7.2:1766244-1766263 | MS.gene024522:intron | 30.0% | |
AAGAATTTGAGTAGCATCAG+TGG | + | chr7.2:1765973-1765992 | None:intergenic | 35.0% | |
AAGACTACAACGTGACAATT+CGG | - | chr7.2:1766664-1766683 | MS.gene024522:CDS | 35.0% | |
AAGCGTCAATTTGAATCATC+TGG | - | chr7.2:1766235-1766254 | MS.gene024522:intron | 35.0% | |
AAGTAAGTCTTTGACAGATG+TGG | - | chr7.2:1766844-1766863 | MS.gene024522:CDS | 35.0% | |
AATGGAATCGGTAAGTATCT+CGG | - | chr7.2:1766314-1766333 | MS.gene024522:intron | 35.0% | |
AGAACTATGATGAGTATTCC+TGG | + | chr7.2:1766360-1766379 | None:intergenic | 35.0% | |
AGCTGATTGAATTTGATTCC+AGG | - | chr7.2:1766339-1766358 | MS.gene024522:CDS | 35.0% | |
AGTCAATCCTTCATCTGTTA+AGG | + | chr7.2:1765934-1765953 | None:intergenic | 35.0% | |
ATTACTTCAAGGAACGTATG+GGG | - | chr7.2:1766042-1766061 | MS.gene024522:CDS | 35.0% | |
CAATTACTTCAAGGAACGTA+TGG | - | chr7.2:1766040-1766059 | MS.gene024522:CDS | 35.0% | |
CTATGATAACTACAACATGG+TGG | - | chr7.2:1766181-1766200 | MS.gene024522:CDS | 35.0% | |
GAAAAAAATCAGGTTCAGCT+TGG | + | chr7.2:1766103-1766122 | None:intergenic | 35.0% | |
GCTCTATGATAACTACAACA+TGG | - | chr7.2:1766178-1766197 | MS.gene024522:CDS | 35.0% | |
TCCTCCATTTCAAACCTATT+CGG | + | chr7.2:1766545-1766564 | None:intergenic | 35.0% | |
TTGTAGTTATCATAGAGCCA+CGG | + | chr7.2:1766176-1766195 | None:intergenic | 35.0% | |
! | GTACTGATGTTAGTAATGGA+GGG | - | chr7.2:1767149-1767168 | MS.gene024522:CDS | 35.0% |
!! | GATATGGGAAAATTTGCTGT+AGG | - | chr7.2:1767127-1767146 | MS.gene024522:CDS | 35.0% |
!! | GTAGGTACTGATGTTAGTAA+TGG | - | chr7.2:1767145-1767164 | MS.gene024522:CDS | 35.0% |
ATCCTTCATCTGTTAAGGTG+AGG | + | chr7.2:1765929-1765948 | None:intergenic | 40.0% | |
CCTCCATTTCAAACCTATTC+GGG | + | chr7.2:1766544-1766563 | None:intergenic | 40.0% | |
CTTAAACTGCATTGTCGCAT+AGG | + | chr7.2:1766459-1766478 | None:intergenic | 40.0% | |
TGATAACTACAACATGGTGG+TGG | - | chr7.2:1766184-1766203 | MS.gene024522:CDS | 40.0% | |
TGATTCAAATTGACGCTTGC+TGG | + | chr7.2:1766233-1766252 | None:intergenic | 40.0% | |
TGTCACGTTGTAGTCTTTGT+GGG | + | chr7.2:1766661-1766680 | None:intergenic | 40.0% | |
TGTTATCTGTGTGGTCTGTT+GGG | - | chr7.2:1766500-1766519 | MS.gene024522:CDS | 40.0% | |
TTATACGCTTGCGCTTCTTA+AGG | + | chr7.2:1767042-1767061 | None:intergenic | 40.0% | |
TTCTGTACCAATTCCATCAC+CGG | - | chr7.2:1766120-1766139 | MS.gene024522:CDS | 40.0% | |
TTGTCACGTTGTAGTCTTTG+TGG | + | chr7.2:1766662-1766681 | None:intergenic | 40.0% | |
! | AAGAAGCGCAAGCGTATAAA+GGG | - | chr7.2:1767043-1767062 | MS.gene024522:CDS | 40.0% |
! | ATCTGCCATTCTTGTTTCAG+AGG | + | chr7.2:1766419-1766438 | None:intergenic | 40.0% |
! | ATGTAGTGTCAAGTGTTGCT+GGG | - | chr7.2:1767104-1767123 | MS.gene024522:CDS | 40.0% |
! | CGAGGTTGATTCAAACCAAA+TGG | + | chr7.2:1766287-1766306 | None:intergenic | 40.0% |
! | CTATGTCAGGTGTTTCTACA+GGG | - | chr7.2:1766957-1766976 | MS.gene024522:CDS | 40.0% |
! | GAATAGGTTTGAAATGGAGG+AGG | - | chr7.2:1766544-1766563 | MS.gene024522:CDS | 40.0% |
! | TAAGAAGCGCAAGCGTATAA+AGG | - | chr7.2:1767042-1767061 | MS.gene024522:CDS | 40.0% |
! | TATGTCAGGTGTTTCTACAG+GGG | - | chr7.2:1766958-1766977 | MS.gene024522:CDS | 40.0% |
! | TGAAGGATTGACTCTCAATC+TGG | - | chr7.2:1765941-1765960 | MS.gene024522:CDS | 40.0% |
!! | CTGTACCTCTGAAACAAGAA+TGG | - | chr7.2:1766411-1766430 | MS.gene024522:CDS | 40.0% |
!! | GGTACTGATGTTAGTAATGG+AGG | - | chr7.2:1767148-1767167 | MS.gene024522:CDS | 40.0% |
AATGGCTGAAACCAGTGGTA+AGG | - | chr7.2:1766591-1766610 | MS.gene024522:CDS | 45.0% | |
ACAACGATATACGTGGATGG+GGG | - | chr7.2:1766567-1766586 | MS.gene024522:CDS | 45.0% | |
ACTGCTGACCTTAACCTTCA+AGG | - | chr7.2:1765903-1765922 | MS.gene024522:CDS | 45.0% | |
AGGACAACGATATACGTGGA+TGG | - | chr7.2:1766564-1766583 | MS.gene024522:CDS | 45.0% | |
CAGGTGCATCAACTACCATT+TGG | - | chr7.2:1766269-1766288 | MS.gene024522:intron | 45.0% | |
CATTTCAAACCTATTCGGGC+AGG | + | chr7.2:1766540-1766559 | None:intergenic | 45.0% | |
CGTTGTAGTCTTTGTGGGAT+AGG | + | chr7.2:1766656-1766675 | None:intergenic | 45.0% | |
CTGCCCGAATAGGTTTGAAA+TGG | - | chr7.2:1766538-1766557 | MS.gene024522:CDS | 45.0% | |
CTGTTATCTGTGTGGTCTGT+TGG | - | chr7.2:1766499-1766518 | MS.gene024522:CDS | 45.0% | |
GACAACGATATACGTGGATG+GGG | - | chr7.2:1766566-1766585 | MS.gene024522:CDS | 45.0% | |
GGACAACGATATACGTGGAT+GGG | - | chr7.2:1766565-1766584 | MS.gene024522:CDS | 45.0% | |
GGTTTGAATCAACCTCGTGT+GGG | - | chr7.2:1766290-1766309 | MS.gene024522:intron | 45.0% | |
GTAGAAACACCTGACATAGC+TGG | + | chr7.2:1766956-1766975 | None:intergenic | 45.0% | |
TAACTCTTCTGCTACTGCTG+TGG | - | chr7.2:1766985-1767004 | MS.gene024522:CDS | 45.0% | |
TGGCAGATTCGAGTGAATGA+CGG | - | chr7.2:1766431-1766450 | MS.gene024522:CDS | 45.0% | |
TGGTTTGAATCAACCTCGTG+TGG | - | chr7.2:1766289-1766308 | MS.gene024522:intron | 45.0% | |
! | AAACCAGTGGTAAGGCGTTT+AGG | - | chr7.2:1766599-1766618 | MS.gene024522:CDS | 45.0% |
! | AGTGGTAAGGCGTTTAGGTA+CGG | - | chr7.2:1766604-1766623 | MS.gene024522:CDS | 45.0% |
! | ATGTCAGGTGTTTCTACAGG+GGG | - | chr7.2:1766959-1766978 | MS.gene024522:CDS | 45.0% |
! | CCCGAATAGGTTTGAAATGG+AGG | - | chr7.2:1766541-1766560 | MS.gene024522:CDS | 45.0% |
! | GATGTAGTGTCAAGTGTTGC+TGG | - | chr7.2:1767103-1767122 | MS.gene024522:CDS | 45.0% |
! | GCTATGTCAGGTGTTTCTAC+AGG | - | chr7.2:1766956-1766975 | MS.gene024522:CDS | 45.0% |
! | TCAAGTGTTGCTGGGGATAT+GGG | - | chr7.2:1767112-1767131 | MS.gene024522:CDS | 45.0% |
! | TGTAGTGTCAAGTGTTGCTG+GGG | - | chr7.2:1767105-1767124 | MS.gene024522:CDS | 45.0% |
!! | AGAGTTTGGTTTGTTCCGCT+TGG | + | chr7.2:1766875-1766894 | None:intergenic | 45.0% |
!! | GACAATTCGGTGCAGGAAAT+GGG | - | chr7.2:1766677-1766696 | MS.gene024522:CDS | 45.0% |
!! | TGACAATTCGGTGCAGGAAA+TGG | - | chr7.2:1766676-1766695 | MS.gene024522:CDS | 45.0% |
AACGTATGGGGCACATTTGG+AGG | - | chr7.2:1766054-1766073 | MS.gene024522:CDS | 50.0% | |
AATCAACCTCGTGTGGGCAA+TGG | - | chr7.2:1766296-1766315 | MS.gene024522:intron | 50.0% | |
ACAGATGTGGCTTCACCAAG+CGG | - | chr7.2:1766857-1766876 | MS.gene024522:CDS | 50.0% | |
AGGAACGTATGGGGCACATT+TGG | - | chr7.2:1766051-1766070 | MS.gene024522:CDS | 50.0% | |
AGGTGAGGCCTTGAAGGTTA+AGG | + | chr7.2:1765914-1765933 | None:intergenic | 50.0% | |
ATATACGTGGATGGGGGGAA+TGG | - | chr7.2:1766573-1766592 | MS.gene024522:CDS | 50.0% | |
ATCAGGTTCAGCTTGGGTGA+TGG | + | chr7.2:1766096-1766115 | None:intergenic | 50.0% | |
CAACGATATACGTGGATGGG+GGG | - | chr7.2:1766568-1766587 | MS.gene024522:CDS | 50.0% | |
CGACAATGAGGATGTCACTG+TGG | - | chr7.2:1767009-1767028 | MS.gene024522:CDS | 50.0% | |
CTGCTGGAAACTTAGCTGCT+GGG | - | chr7.2:1766714-1766733 | MS.gene024522:CDS | 50.0% | |
CTGTTAAGGTGAGGCCTTGA+AGG | + | chr7.2:1765920-1765939 | None:intergenic | 50.0% | |
GAGGAGGACAACGATATACG+TGG | - | chr7.2:1766560-1766579 | MS.gene024522:CDS | 50.0% | |
GGCCTCACCTTAACAGATGA+AGG | - | chr7.2:1765924-1765943 | MS.gene024522:CDS | 50.0% | |
GTACCTAAACGCCTTACCAC+TGG | + | chr7.2:1766605-1766624 | None:intergenic | 50.0% | |
GTACGGCTGCTACAAACATC+TGG | - | chr7.2:1766621-1766640 | MS.gene024522:CDS | 50.0% | |
GTGATGGTAACACGTTTCCC+TGG | + | chr7.2:1766080-1766099 | None:intergenic | 50.0% | |
TACTGCTGTGGACGACAATG+AGG | - | chr7.2:1766997-1767016 | MS.gene024522:CDS | 50.0% | |
TCATCTGGACATATGGGTGC+AGG | - | chr7.2:1766250-1766269 | MS.gene024522:intron | 50.0% | |
TGAGTCTCCATAGTGAGTCG+CGG | + | chr7.2:1766905-1766924 | None:intergenic | 50.0% | |
TGCTACAAACATCTGGCTGC+AGG | - | chr7.2:1766628-1766647 | MS.gene024522:CDS | 50.0% | |
TGCTGGGCCATCAGAAAAGT+GGG | - | chr7.2:1766730-1766749 | MS.gene024522:CDS | 50.0% | |
! | AGCGCAAGAACGAGTGGATT+AGG | + | chr7.2:1766932-1766951 | None:intergenic | 50.0% |
! | GGGGTGTTCTGTTATCTGTG+TGG | - | chr7.2:1766491-1766510 | MS.gene024522:CDS | 50.0% |
! | GGTCAACATGTTTCTGCTGC+TGG | - | chr7.2:1766698-1766717 | MS.gene024522:CDS | 50.0% |
! | GTCAAGTGTTGCTGGGGATA+TGG | - | chr7.2:1767111-1767130 | MS.gene024522:CDS | 50.0% |
!! | ACAACGTGACAATTCGGTGC+AGG | - | chr7.2:1766670-1766689 | MS.gene024522:CDS | 50.0% |
CCTCGTGTGGGCAATGGAAT+CGG | - | chr7.2:1766302-1766321 | MS.gene024522:intron | 55.0% | |
CTGACAAGACCTGCCCGAAT+AGG | - | chr7.2:1766528-1766547 | MS.gene024522:CDS | 55.0% | |
CTGCTGGGCCATCAGAAAAG+TGG | - | chr7.2:1766729-1766748 | MS.gene024522:CDS | 55.0% | |
CTTGCGCTACCAGCTATGTC+AGG | - | chr7.2:1766944-1766963 | MS.gene024522:CDS | 55.0% | |
GCTGCTGGAAACTTAGCTGC+TGG | - | chr7.2:1766713-1766732 | MS.gene024522:CDS | 55.0% | |
! | ACGCTTGCTGGAACAACTCC+AGG | + | chr7.2:1766221-1766240 | None:intergenic | 55.0% |
! | GTGGTGGAACGTATTGCTCC+TGG | - | chr7.2:1766200-1766219 | MS.gene024522:CDS | 55.0% |
!! | CGTCAAGCCGGTGATGGAAT+TGG | + | chr7.2:1766130-1766149 | None:intergenic | 55.0% |
ATGGGGCACATTTGGAGGCC+AGG | - | chr7.2:1766059-1766078 | MS.gene024522:CDS | 60.0% | |
CCGATTCCATTGCCCACACG+AGG | + | chr7.2:1766305-1766324 | None:intergenic | 60.0% | |
CTGCAAAGGTCCTGGAGGAG+GGG | - | chr7.2:1766150-1766169 | MS.gene024522:CDS | 60.0% | |
GCCATCAGAAAAGTGGGCGC+TGG | - | chr7.2:1766736-1766755 | MS.gene024522:CDS | 60.0% | |
GCTGCAAAGGTCCTGGAGGA+GGG | - | chr7.2:1766149-1766168 | MS.gene024522:CDS | 60.0% | |
GCTTGACGCTGCAAAGGTCC+TGG | - | chr7.2:1766142-1766161 | MS.gene024522:CDS | 60.0% | |
GGACCTTTGCAGCGTCAAGC+CGG | + | chr7.2:1766142-1766161 | None:intergenic | 60.0% | |
GGGGGAATGGCTGAAACCAG+TGG | - | chr7.2:1766586-1766605 | MS.gene024522:CDS | 60.0% | |
GTCGCGGCAGAGACAGAGTT+TGG | + | chr7.2:1766889-1766908 | None:intergenic | 60.0% | |
GTCTCTGCCGCGACTCACTA+TGG | - | chr7.2:1766895-1766914 | MS.gene024522:CDS | 60.0% | |
TGACGCTGCAAAGGTCCTGG+AGG | - | chr7.2:1766145-1766164 | MS.gene024522:CDS | 60.0% | |
TGGGGCACATTTGGAGGCCA+GGG | - | chr7.2:1766060-1766079 | MS.gene024522:CDS | 60.0% | |
TTGCAGCGTCAAGCCGGTGA+TGG | + | chr7.2:1766136-1766155 | None:intergenic | 60.0% | |
! | GCTGGTAGCGCAAGAACGAG+TGG | + | chr7.2:1766938-1766957 | None:intergenic | 60.0% |
!! | GCCAGCGCCCACTTTTCTGA+TGG | + | chr7.2:1766740-1766759 | None:intergenic | 60.0% |
!! | TCACCGGCTTGACGCTGCAA+AGG | - | chr7.2:1766136-1766155 | MS.gene024522:CDS | 60.0% |
!! | TCAGAAAAGTGGGCGCTGGC+AGG | - | chr7.2:1766740-1766759 | MS.gene024522:CDS | 60.0% |
CGCTGCAAAGGTCCTGGAGG+AGG | - | chr7.2:1766148-1766167 | MS.gene024522:CDS | 65.0% | |
AGAGCCACGGCCCCTCCTCC+AGG | + | chr7.2:1766163-1766182 | None:intergenic | 75.0% | |
AGGTCCTGGAGGAGGGGCCG+TGG | - | chr7.2:1766156-1766175 | MS.gene024522:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 1765897 | 1767183 | 1765897 | ID=MS.gene024522 |
chr7.2 | mRNA | 1765897 | 1767183 | 1765897 | ID=MS.gene024522.t1;Parent=MS.gene024522 |
chr7.2 | exon | 1766319 | 1767183 | 1766319 | ID=MS.gene024522.t1.exon1;Parent=MS.gene024522.t1 |
chr7.2 | CDS | 1766319 | 1767183 | 1766319 | ID=cds.MS.gene024522.t1;Parent=MS.gene024522.t1 |
chr7.2 | exon | 1765897 | 1766219 | 1765897 | ID=MS.gene024522.t1.exon2;Parent=MS.gene024522.t1 |
chr7.2 | CDS | 1765897 | 1766219 | 1765897 | ID=cds.MS.gene024522.t1;Parent=MS.gene024522.t1 |
Gene Sequence |
Protein sequence |