AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83979

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83979.t1 MTR_3g053920 45.076 264 76 4 1 261 83 280 3.25e-59 191
MS.gene83979.t1 MTR_8g463110 66.102 118 37 1 207 321 1 118 1.09e-34 134
MS.gene83979.t1 MTR_7g011710 85.965 57 8 0 1 57 29 85 2.34e-29 110
MS.gene83979.t1 MTR_4g103530 71.233 73 20 1 1 73 29 100 2.92e-29 111
MS.gene83979.t1 MTR_6g033215 38.136 118 71 1 2 117 177 294 1.06e-21 93.6
MS.gene83979.t1 MTR_2g061500 78.723 47 10 0 1 47 83 129 2.19e-19 83.2
MS.gene83979.t1 MTR_0010s0370 38.144 97 58 1 1 95 81 177 7.32e-17 77.8
MS.gene83979.t1 MTR_0010s0350 38.144 97 58 1 1 95 81 177 7.32e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83979.t1 AT2G17920 27.941 136 94 2 1 134 86 219 1.18e-16 79.7
MS.gene83979.t1 AT5G36228 29.286 140 95 2 7 144 92 229 1.21e-15 77.0
MS.gene83979.t1 AT3G57587 27.941 136 94 2 1 134 86 219 1.77e-15 76.6
MS.gene83979.t1 AT2G41590 27.941 136 94 2 1 134 86 219 2.35e-15 76.3
MS.gene83979.t1 AT2G02103 27.941 136 94 2 1 134 86 219 8.95e-15 75.1
MS.gene83979.t1 AT5G25200 27.941 136 94 2 1 134 86 219 1.03e-14 74.3
MS.gene83979.t1 AT5G18636 27.941 136 94 2 1 134 86 219 1.06e-14 74.3
MS.gene83979.t1 AT3G31430 27.692 130 88 3 6 133 186 311 1.94e-13 70.5
MS.gene83979.t1 AT3G47920 27.200 125 87 2 12 134 26 148 2.37e-13 70.1

Find 96 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTCCTCAGAGTTGATATT+TGG 0.207509 6.1:+30821802 None:intergenic
CTCTGTCAATTTGAACCATT+TGG 0.238540 6.1:-30822517 MS.gene83979:CDS
CGCGGTACAACAGCTGGAAT+TGG 0.308417 6.1:+30822099 None:intergenic
ATTTGAACCATTTGGACATC+TGG 0.315021 6.1:-30822509 MS.gene83979:CDS
CAGGTTCACGGTCTCCCTTT+TGG 0.322465 6.1:-30822483 MS.gene83979:CDS
GAACCAACACGGGCAGTAAT+AGG 0.344999 6.1:+30822150 None:intergenic
CTGATGACGGTGTACGCAAT+TGG 0.375940 6.1:-30822188 MS.gene83979:CDS
CCGAATGTTGGTCAAGGTAT+AGG 0.382070 6.1:-30822450 MS.gene83979:CDS
GACTCCAATTCGAACAAATC+CGG 0.396340 6.1:+30822210 None:intergenic
TCGGCTTCAAACTTGATTGC+TGG 0.399955 6.1:-30821862 MS.gene83979:CDS
TTGCCCGGATTTGTTCGAAT+TGG 0.407169 6.1:-30822214 MS.gene83979:CDS
GCTGGCCGCCCCATTGTCCT+TGG 0.412393 6.1:-30821844 MS.gene83979:CDS
TGATGACGGTGTACGCAATT+GGG 0.412713 6.1:-30822187 MS.gene83979:CDS
GACATCTGGGTCCAGGTTCA+CGG 0.413519 6.1:-30822495 MS.gene83979:CDS
CCATCAGTAGGGACACCATC+AGG 0.421684 6.1:+30822066 None:intergenic
CATGTTTGAGTGCAGAAATC+TGG 0.427184 6.1:+30821974 None:intergenic
AAGTGTATCTGACAAGCATT+CGG 0.428186 6.1:+30821910 None:intergenic
ACGGACCGTCCTCGAGAATA+CGG 0.433215 6.1:+30822598 None:intergenic
GCGGGTAAACCAAGGACAAT+GGG 0.434404 6.1:+30821835 None:intergenic
AGTGTATCTGACAAGCATTC+GGG 0.437145 6.1:+30821911 None:intergenic
CGATAATTTCCATATTGTAA+TGG 0.443254 6.1:-30822568 MS.gene83979:CDS
AAATTTAAATATGAGAAACT+TGG 0.446273 6.1:-30822282 MS.gene83979:CDS
TGTTTCAGGTGCGGATTGCT+TGG 0.449390 6.1:-30822252 MS.gene83979:CDS
GGATACGGTCCATTACAATA+TGG 0.451225 6.1:+30822559 None:intergenic
TGGTTCAAATTGACAGAGAC+AGG 0.455180 6.1:+30822522 None:intergenic
TTGTTACCCTCTTCTTCTAC+AGG 0.456951 6.1:-30821889 MS.gene83979:CDS
TTCGGTTGAATGCAGCCAAA+AGG 0.459459 6.1:+30822468 None:intergenic
CAAAAGGGAGACCGTGAACC+TGG 0.468154 6.1:+30822484 None:intergenic
AATAGAGTTACGGACATCAT+AGG 0.469134 6.1:+30822404 None:intergenic
TGTTGGCGCGGTACAACAGC+TGG 0.469888 6.1:+30822093 None:intergenic
ATTGTCCTTGGTTTACCCGC+TGG 0.471620 6.1:-30821832 MS.gene83979:CDS
AATTCAGAACCCGTATCGTC+TGG 0.471935 6.1:+30821778 None:intergenic
GCGGACTTTCAGACGCATAT+AGG 0.475542 6.1:+30822374 None:intergenic
CCTATACCTTGACCAACATT+CGG 0.476916 6.1:+30822450 None:intergenic
GCGGTACAACAGCTGGAATT+GGG 0.484847 6.1:+30822100 None:intergenic
TGAGGAGTCTCCAGACGATA+CGG 0.485799 6.1:-30821788 MS.gene83979:CDS
CTGAATTGAAGAAGAGAAAG+AGG 0.490319 6.1:-30821762 MS.gene83979:CDS
CCATTTGGACATCTGGGTCC+AGG 0.493863 6.1:-30822502 MS.gene83979:CDS
CTCTTCTTCTACAGGTAACT+CGG 0.496005 6.1:-30821881 MS.gene83979:CDS
TTTGAACCATTTGGACATCT+GGG 0.500920 6.1:-30822508 MS.gene83979:CDS
CATAGGATTTGAGCTCTCCT+AGG 0.503764 6.1:+30822421 None:intergenic
CAAGGTATAGGTAGTTTCCT+AGG 0.509370 6.1:-30822438 MS.gene83979:CDS
TAGGAACAAATGTTAGTCAT+GGG 0.515296 6.1:-30821672 MS.gene83979:CDS
CCTGGACCCAGATGTCCAAA+TGG 0.518153 6.1:+30822502 None:intergenic
ATGTGATTTCACCATTCTGA+AGG 0.518187 6.1:+30821731 None:intergenic
GCAGTAATAGGCTTCAAGTC+AGG 0.519143 6.1:+30822162 None:intergenic
TCGGTTGAATGCAGCCAAAA+GGG 0.527729 6.1:+30822469 None:intergenic
GTTCTGCTGCTCATAACAAA+TGG 0.532591 6.1:-30822131 MS.gene83979:CDS
ACTCCAATTCGAACAAATCC+GGG 0.534125 6.1:+30822211 None:intergenic
CGAGTTACCTGTAGAAGAAG+AGG 0.536274 6.1:+30821882 None:intergenic
ACACACTGACAAAGTTTGCC+CGG 0.538567 6.1:-30822229 MS.gene83979:CDS
ATAGGAACAAATGTTAGTCA+TGG 0.541273 6.1:-30821673 MS.gene83979:CDS
AGGTACTGTGAATAGAGTTA+CGG 0.543594 6.1:+30822394 None:intergenic
GAGGAGTCTCCAGACGATAC+GGG 0.544300 6.1:-30821787 MS.gene83979:CDS
GGCTGCATTCAACCGAATGT+TGG 0.550237 6.1:-30822462 MS.gene83979:CDS
CCTGATGGTGTCCCTACTGA+TGG 0.557692 6.1:-30822066 MS.gene83979:CDS
GGACAACACCAGGTTGGATA+CGG 0.557706 6.1:+30822544 None:intergenic
ATATTTGGAAGCGGTCCAGC+GGG 0.559040 6.1:+30821817 None:intergenic
TTTGCTGCTGATGGGGATGA+GGG 0.559997 6.1:-30821706 MS.gene83979:CDS
AAGCCTATTACTGCCCGTGT+TGG 0.566677 6.1:-30822153 MS.gene83979:CDS
AGCGGGTAAACCAAGGACAA+TGG 0.569865 6.1:+30821834 None:intergenic
AAAAGTTTCGGCCATCAGTA+GGG 0.577523 6.1:+30822055 None:intergenic
AACAAATGTTAGTCATGGGG+GGG 0.581782 6.1:-30821668 MS.gene83979:CDS
ACAGAGACAGGGACAACACC+AGG 0.589318 6.1:+30822534 None:intergenic
CGGACCGTCCTCGAGAATAC+GGG 0.589550 6.1:+30822599 None:intergenic
GATGACGGTGTACGCAATTG+GGG 0.592989 6.1:-30822186 MS.gene83979:CDS
TTCGAATTGGAGTCTGATGA+CGG 0.600410 6.1:-30822201 MS.gene83979:CDS
TGTGATTTCACCATTCTGAA+GGG 0.601839 6.1:+30821732 None:intergenic
AGGATGTTGTCCCTTCAGAA+TGG 0.604313 6.1:-30821742 MS.gene83979:CDS
GGACACCATCAGGGACATGT+TGG 0.610675 6.1:+30822076 None:intergenic
TCAGAGTTGATATTTGGAAG+CGG 0.611255 6.1:+30821808 None:intergenic
CATCAGTAGGGACACCATCA+GGG 0.618313 6.1:+30822067 None:intergenic
GAGTTACCTGTAGAAGAAGA+GGG 0.619291 6.1:+30821883 None:intergenic
AGACAGGGACAACACCAGGT+TGG 0.622978 6.1:+30822538 None:intergenic
CCGCGCCAACATGTCCCTGA+TGG 0.624504 6.1:-30822081 MS.gene83979:CDS
TGGAAAGTACGTGTCAGTAA+CGG 0.636011 6.1:-30822321 MS.gene83979:CDS
AGGAACAAATGTTAGTCATG+GGG 0.636254 6.1:-30821671 MS.gene83979:CDS
GTATTCTCGAGGACGGTCCG+TGG 0.642027 6.1:-30822596 MS.gene83979:CDS
GGATGCTGCCCGTATTCTCG+AGG 0.643363 6.1:-30822607 MS.gene83979:CDS
GCGGTCCAGCGGGTAAACCA+AGG 0.644397 6.1:+30821827 None:intergenic
GTAATGGACCGTATCCAACC+TGG 0.644730 6.1:-30822552 MS.gene83979:CDS
ATTCAACCGAATGTTGGTCA+AGG 0.645233 6.1:-30822456 MS.gene83979:CDS
AATCTTGTCAAAACAAAACA+TGG 0.645721 6.1:-30821934 MS.gene83979:CDS
GATATTTGGAAGCGGTCCAG+CGG 0.646529 6.1:+30821816 None:intergenic
GGAACAAATGTTAGTCATGG+GGG 0.649440 6.1:-30821670 MS.gene83979:CDS
ATGAGCAGCAGAACCAACAC+GGG 0.650049 6.1:+30822140 None:intergenic
TATGAGCAGCAGAACCAACA+CGG 0.654019 6.1:+30822139 None:intergenic
CGGGTAAACCAAGGACAATG+GGG 0.655910 6.1:+30821836 None:intergenic
GAACAAATGTTAGTCATGGG+GGG 0.658931 6.1:-30821669 MS.gene83979:CDS
GCTGCCCGTATTCTCGAGGA+CGG 0.659894 6.1:-30822603 MS.gene83979:CDS
TGGAAATTATCGTACAGCCA+CGG 0.685964 6.1:+30822579 None:intergenic
GTAAACCAAGGACAATGGGG+CGG 0.691054 6.1:+30821839 None:intergenic
CCATCAGGGACATGTTGGCG+CGG 0.695790 6.1:+30822081 None:intergenic
AGGGAGCGGTGACATTAATG+CGG 0.713444 6.1:+30822355 None:intergenic
GCTTCCAAATATCAACTCTG+AGG 0.722304 6.1:-30821806 MS.gene83979:CDS
GGTTCAAATTGACAGAGACA+GGG 0.724898 6.1:+30822523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAAATATGAGAAACT+TGG - chr6.1:30821987-30822006 MS.gene83979:CDS 15.0%
!!! TTTAAATTTTACTGTAACAT+AGG + chr6.1:30821976-30821995 None:intergenic 15.0%
!!! TTTTGTTTTGACAAGATTTT+GGG + chr6.1:30822333-30822352 None:intergenic 20.0%
! AATCTTGTCAAAACAAAACA+TGG - chr6.1:30822335-30822354 MS.gene83979:CDS 25.0%
! CGATAATTTCCATATTGTAA+TGG - chr6.1:30821701-30821720 MS.gene83979:CDS 25.0%
!!! ACTTTCCATTCTTTTTTCAA+GGG + chr6.1:30821936-30821955 None:intergenic 25.0%
!!! GTTTTGTTTTGACAAGATTT+TGG + chr6.1:30822334-30822353 None:intergenic 25.0%
!!! TACTTTCCATTCTTTTTTCA+AGG + chr6.1:30821937-30821956 None:intergenic 25.0%
ATAGGAACAAATGTTAGTCA+TGG - chr6.1:30822596-30822615 MS.gene83979:CDS 30.0%
TAGGAACAAATGTTAGTCAT+GGG - chr6.1:30822597-30822616 MS.gene83979:CDS 30.0%
! GATGAGGGAAATTTTGTAAT+AGG - chr6.1:30822578-30822597 MS.gene83979:CDS 30.0%
!!! AACTTGGAGTTTTTTGTTTC+AGG - chr6.1:30822003-30822022 MS.gene83979:CDS 30.0%
AAGTGTATCTGACAAGCATT+CGG + chr6.1:30822362-30822381 None:intergenic 35.0%
AATAGAGTTACGGACATCAT+AGG + chr6.1:30821868-30821887 None:intergenic 35.0%
AGGAACAAATGTTAGTCATG+GGG - chr6.1:30822598-30822617 MS.gene83979:CDS 35.0%
ATGTGATTTCACCATTCTGA+AGG + chr6.1:30822541-30822560 None:intergenic 35.0%
ATTTGAACCATTTGGACATC+TGG - chr6.1:30821760-30821779 MS.gene83979:CDS 35.0%
CACCACTAGCAAAAAAGTTT+CGG + chr6.1:30822229-30822248 None:intergenic 35.0%
CTCTGTCAATTTGAACCATT+TGG - chr6.1:30821752-30821771 MS.gene83979:CDS 35.0%
CTGAATTGAAGAAGAGAAAG+AGG - chr6.1:30822507-30822526 MS.gene83979:CDS 35.0%
TGTGATTTCACCATTCTGAA+GGG + chr6.1:30822540-30822559 None:intergenic 35.0%
TTTGAACCATTTGGACATCT+GGG - chr6.1:30821761-30821780 MS.gene83979:CDS 35.0%
! AGGTACTGTGAATAGAGTTA+CGG + chr6.1:30821878-30821897 None:intergenic 35.0%
!! TCAGAGTTGATATTTGGAAG+CGG + chr6.1:30822464-30822483 None:intergenic 35.0%
AAAAAGTTTCGGCCATCAGT+AGG + chr6.1:30822218-30822237 None:intergenic 40.0%
AAAAGTTTCGGCCATCAGTA+GGG + chr6.1:30822217-30822236 None:intergenic 40.0%
AACAAATGTTAGTCATGGGG+GGG - chr6.1:30822601-30822620 MS.gene83979:CDS 40.0%
ACTCCAATTCGAACAAATCC+GGG + chr6.1:30822061-30822080 None:intergenic 40.0%
AGTGTATCTGACAAGCATTC+GGG + chr6.1:30822361-30822380 None:intergenic 40.0%
ATTCAACCGAATGTTGGTCA+AGG - chr6.1:30821813-30821832 MS.gene83979:CDS 40.0%
CAAGGTATAGGTAGTTTCCT+AGG - chr6.1:30821831-30821850 MS.gene83979:CDS 40.0%
CATGTTTGAGTGCAGAAATC+TGG + chr6.1:30822298-30822317 None:intergenic 40.0%
CCTATACCTTGACCAACATT+CGG + chr6.1:30821822-30821841 None:intergenic 40.0%
CTCTTCTTCTACAGGTAACT+CGG - chr6.1:30822388-30822407 MS.gene83979:CDS 40.0%
GAACAAATGTTAGTCATGGG+GGG - chr6.1:30822600-30822619 MS.gene83979:CDS 40.0%
GACTCCAATTCGAACAAATC+CGG + chr6.1:30822062-30822081 None:intergenic 40.0%
GAGTTACCTGTAGAAGAAGA+GGG + chr6.1:30822389-30822408 None:intergenic 40.0%
GCTTCCAAATATCAACTCTG+AGG - chr6.1:30822463-30822482 MS.gene83979:CDS 40.0%
GGAACAAATGTTAGTCATGG+GGG - chr6.1:30822599-30822618 MS.gene83979:CDS 40.0%
GGATACGGTCCATTACAATA+TGG + chr6.1:30821713-30821732 None:intergenic 40.0%
GGTTCAAATTGACAGAGACA+GGG + chr6.1:30821749-30821768 None:intergenic 40.0%
GTTCTGCTGCTCATAACAAA+TGG - chr6.1:30822138-30822157 MS.gene83979:CDS 40.0%
TGGAAATTATCGTACAGCCA+CGG + chr6.1:30821693-30821712 None:intergenic 40.0%
TGGTTCAAATTGACAGAGAC+AGG + chr6.1:30821750-30821769 None:intergenic 40.0%
TTCGAATTGGAGTCTGATGA+CGG - chr6.1:30822068-30822087 MS.gene83979:CDS 40.0%
TTGTTACCCTCTTCTTCTAC+AGG - chr6.1:30822380-30822399 MS.gene83979:CDS 40.0%
! ATCACATCTTTTGCTGCTGA+TGG - chr6.1:30822554-30822573 MS.gene83979:CDS 40.0%
! TCACATCTTTTGCTGCTGAT+GGG - chr6.1:30822555-30822574 MS.gene83979:CDS 40.0%
! TGGAAAGTACGTGTCAGTAA+CGG - chr6.1:30821948-30821967 MS.gene83979:CDS 40.0%
!! GACTCCTCAGAGTTGATATT+TGG + chr6.1:30822470-30822489 None:intergenic 40.0%
!!! CCATTCTTTTTTCAAGGGAG+CGG + chr6.1:30821931-30821950 None:intergenic 40.0%
!!! GGAGTTTTTTGTTTCAGGTG+CGG - chr6.1:30822008-30822027 MS.gene83979:CDS 40.0%
AATTCAGAACCCGTATCGTC+TGG + chr6.1:30822494-30822513 None:intergenic 45.0%
ACAAATGTTAGTCATGGGGG+GGG - chr6.1:30822602-30822621 MS.gene83979:CDS 45.0%
ACACACTGACAAAGTTTGCC+CGG - chr6.1:30822040-30822059 MS.gene83979:CDS 45.0%
AGGATGTTGTCCCTTCAGAA+TGG - chr6.1:30822527-30822546 MS.gene83979:CDS 45.0%
CATAGGATTTGAGCTCTCCT+AGG + chr6.1:30821851-30821870 None:intergenic 45.0%
CCGAATGTTGGTCAAGGTAT+AGG - chr6.1:30821819-30821838 MS.gene83979:CDS 45.0%
CCGCTCCCTTGAAAAAAGAA+TGG - chr6.1:30821928-30821947 MS.gene83979:CDS 45.0%
CGAGTTACCTGTAGAAGAAG+AGG + chr6.1:30822390-30822409 None:intergenic 45.0%
GCAGTAATAGGCTTCAAGTC+AGG + chr6.1:30822110-30822129 None:intergenic 45.0%
TATGAGCAGCAGAACCAACA+CGG + chr6.1:30822133-30822152 None:intergenic 45.0%
TCGGCTTCAAACTTGATTGC+TGG - chr6.1:30822407-30822426 MS.gene83979:CDS 45.0%
TCGGTTGAATGCAGCCAAAA+GGG + chr6.1:30821803-30821822 None:intergenic 45.0%
TTCGGTTGAATGCAGCCAAA+AGG + chr6.1:30821804-30821823 None:intergenic 45.0%
! CAAGATTTTGGGCAGCAAGT+AGG + chr6.1:30822322-30822341 None:intergenic 45.0%
! CACATCTTTTGCTGCTGATG+GGG - chr6.1:30822556-30822575 MS.gene83979:CDS 45.0%
! TTGCCCGGATTTGTTCGAAT+TGG - chr6.1:30822055-30822074 MS.gene83979:CDS 45.0%
!! TGATGACGGTGTACGCAATT+GGG - chr6.1:30822082-30822101 MS.gene83979:CDS 45.0%
!!! GGCCGAAACTTTTTTGCTAG+TGG - chr6.1:30822224-30822243 MS.gene83979:CDS 45.0%
!!! TTTTTTGCTAGTGGTGCTGC+TGG - chr6.1:30822233-30822252 MS.gene83979:CDS 45.0%
AAGCCTATTACTGCCCGTGT+TGG - chr6.1:30822116-30822135 MS.gene83979:CDS 50.0%
AGCGGGTAAACCAAGGACAA+TGG + chr6.1:30822438-30822457 None:intergenic 50.0%
AGGGAGCGGTGACATTAATG+CGG + chr6.1:30821917-30821936 None:intergenic 50.0%
ATATTTGGAAGCGGTCCAGC+GGG + chr6.1:30822455-30822474 None:intergenic 50.0%
ATGAGCAGCAGAACCAACAC+GGG + chr6.1:30822132-30822151 None:intergenic 50.0%
ATTGTCCTTGGTTTACCCGC+TGG - chr6.1:30822437-30822456 MS.gene83979:CDS 50.0%
CATCAGTAGGGACACCATCA+GGG + chr6.1:30822205-30822224 None:intergenic 50.0%
CGGGTAAACCAAGGACAATG+GGG + chr6.1:30822436-30822455 None:intergenic 50.0%
GAACCAACACGGGCAGTAAT+AGG + chr6.1:30822122-30822141 None:intergenic 50.0%
GATATTTGGAAGCGGTCCAG+CGG + chr6.1:30822456-30822475 None:intergenic 50.0%
GCGGACTTTCAGACGCATAT+AGG + chr6.1:30821898-30821917 None:intergenic 50.0%
GCGGGTAAACCAAGGACAAT+GGG + chr6.1:30822437-30822456 None:intergenic 50.0%
GCGGTACAACAGCTGGAATT+GGG + chr6.1:30822172-30822191 None:intergenic 50.0%
GGCTGCATTCAACCGAATGT+TGG - chr6.1:30821807-30821826 MS.gene83979:CDS 50.0%
GTAAACCAAGGACAATGGGG+CGG + chr6.1:30822433-30822452 None:intergenic 50.0%
TGAGGAGTCTCCAGACGATA+CGG - chr6.1:30822481-30822500 MS.gene83979:CDS 50.0%
TTTGCTGCTGATGGGGATGA+GGG - chr6.1:30822563-30822582 MS.gene83979:CDS 50.0%
! GATGACGGTGTACGCAATTG+GGG - chr6.1:30822083-30822102 MS.gene83979:CDS 50.0%
! GGACAACACCAGGTTGGATA+CGG + chr6.1:30821728-30821747 None:intergenic 50.0%
! TGTTTCAGGTGCGGATTGCT+TGG - chr6.1:30822017-30822036 MS.gene83979:CDS 50.0%
! TTTTGCTGCTGATGGGGATG+AGG - chr6.1:30822562-30822581 MS.gene83979:CDS 50.0%
!! CTGATGACGGTGTACGCAAT+TGG - chr6.1:30822081-30822100 MS.gene83979:CDS 50.0%
!! GTAATGGACCGTATCCAACC+TGG - chr6.1:30821717-30821736 MS.gene83979:CDS 50.0%
ACAGAGACAGGGACAACACC+AGG + chr6.1:30821738-30821757 None:intergenic 55.0%
ACGGACCGTCCTCGAGAATA+CGG + chr6.1:30821674-30821693 None:intergenic 55.0%
AGACAGGGACAACACCAGGT+TGG + chr6.1:30821734-30821753 None:intergenic 55.0%
CAAAAGGGAGACCGTGAACC+TGG + chr6.1:30821788-30821807 None:intergenic 55.0%
CCATCAGTAGGGACACCATC+AGG + chr6.1:30822206-30822225 None:intergenic 55.0%
CCATTTGGACATCTGGGTCC+AGG - chr6.1:30821767-30821786 MS.gene83979:CDS 55.0%
CCTGGACCCAGATGTCCAAA+TGG + chr6.1:30821770-30821789 None:intergenic 55.0%
CGCGGTACAACAGCTGGAAT+TGG + chr6.1:30822173-30822192 None:intergenic 55.0%
GACATCTGGGTCCAGGTTCA+CGG - chr6.1:30821774-30821793 MS.gene83979:CDS 55.0%
GAGGAGTCTCCAGACGATAC+GGG - chr6.1:30822482-30822501 MS.gene83979:CDS 55.0%
GGACACCATCAGGGACATGT+TGG + chr6.1:30822196-30822215 None:intergenic 55.0%
! CAGGTTCACGGTCTCCCTTT+TGG - chr6.1:30821786-30821805 MS.gene83979:CDS 55.0%
! CCTGATGGTGTCCCTACTGA+TGG - chr6.1:30822203-30822222 MS.gene83979:CDS 55.0%
CCATCAGGGACATGTTGGCG+CGG + chr6.1:30822191-30822210 None:intergenic 60.0%
CGGACCGTCCTCGAGAATAC+GGG + chr6.1:30821673-30821692 None:intergenic 60.0%
GCTGCCCGTATTCTCGAGGA+CGG - chr6.1:30821666-30821685 MS.gene83979:CDS 60.0%
GGATGCTGCCCGTATTCTCG+AGG - chr6.1:30821662-30821681 MS.gene83979:CDS 60.0%
GTATTCTCGAGGACGGTCCG+TGG - chr6.1:30821673-30821692 MS.gene83979:CDS 60.0%
TGTTGGCGCGGTACAACAGC+TGG + chr6.1:30822179-30822198 None:intergenic 60.0%
CCGCGCCAACATGTCCCTGA+TGG - chr6.1:30822188-30822207 MS.gene83979:CDS 65.0%
GCGGTCCAGCGGGTAAACCA+AGG + chr6.1:30822445-30822464 None:intergenic 65.0%
GCTGGCCGCCCCATTGTCCT+TGG - chr6.1:30822425-30822444 MS.gene83979:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 30821660 30822631 30821660 ID=MS.gene83979
chr6.1 mRNA 30821660 30822631 30821660 ID=MS.gene83979.t1;Parent=MS.gene83979
chr6.1 exon 30821660 30822631 30821660 ID=MS.gene83979.t1.exon1;Parent=MS.gene83979.t1
chr6.1 CDS 30821660 30822631 30821660 ID=cds.MS.gene83979.t1;Parent=MS.gene83979.t1
Gene Sequence

>MS.gene83979

ATGGATGCTGCCCGTATTCTCGAGGACGGTCCGTGGCTGTACGATAATTTCCATATTGTAATGGACCGTATCCAACCTGGTGTTGTCCCTGTCTCTGTCAATTTGAACCATTTGGACATCTGGGTCCAGGTTCACGGTCTCCCTTTTGGCTGCATTCAACCGAATGTTGGTCAAGGTATAGGTAGTTTCCTAGGAGAGCTCAAATCCTATGATGTCCGTAACTCTATTCACAGTACCTATATGCGTCTGAAAGTCCGCATTAATGTCACCGCTCCCTTGAAAAAAGAATGGAAAGTACGTGTCAGTAACGGTGCCTATGTTACAGTAAAATTTAAATATGAGAAACTTGGAGTTTTTTGTTTCAGGTGCGGATTGCTTGGACACACTGACAAAGTTTGCCCGGATTTGTTCGAATTGGAGTCTGATGACGGTGTACGCAATTGGGGTCCTGACTTGAAGCCTATTACTGCCCGTGTTGGTTCTGCTGCTCATAACAAATGGTTGCAAGACCCAATTCCAGCTGTTGTACCGCGCCAACATGTCCCTGATGGTGTCCCTACTGATGGCCGAAACTTTTTTGCTAGTGGTGCTGCTGGTGCTGCAACTTTTAGTGATCGAATGCTTGCTGTTGACAACCAGATTTCTGCACTCAAACATGACCTACTTGCTGCCCAAAATCTTGTCAAAACAAAACATGGCCCGAATGCTTGTCAGATACACTTGTTACCCTCTTCTTCTACAGGTAACTCGGCTTCAAACTTGATTGCTGGCCGCCCCATTGTCCTTGGTTTACCCGCTGGACCGCTTCCAAATATCAACTCTGAGGAGTCTCCAGACGATACGGGTTCTGAATTGAAGAAGAGAAAGAGGATGTTGTCCCTTCAGAATGGTGAAATCACATCTTTTGCTGCTGATGGGGATGAGGGAAATTTTGTAATAGGAACAAATGTTAGTCATGGGGGGGGATGCTGA
Protein sequence

>MS.gene83979.t1

MDAARILEDGPWLYDNFHIVMDRIQPGVVPVSVNLNHLDIWVQVHGLPFGCIQPNVGQGIGSFLGELKSYDVRNSIHSTYMRLKVRINVTAPLKKEWKVRVSNGAYVTVKFKYEKLGVFCFRCGLLGHTDKVCPDLFELESDDGVRNWGPDLKPITARVGSAAHNKWLQDPIPAVVPRQHVPDGVPTDGRNFFASGAAGAATFSDRMLAVDNQISALKHDLLAAQNLVKTKHGPNACQIHLLPSSSTGNSASNLIAGRPIVLGLPAGPLPNINSEESPDDTGSELKKRKRMLSLQNGEITSFAADGDEGNFVIGTNVSHGGGC