Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007022.t1 | GAU21788.1 | 66.1 | 375 | 120 | 1 | 1 | 368 | 1 | 375 | 1.00E-134 | 490 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007022.t1 | A0A392M033 | 68.4 | 377 | 108 | 5 | 1 | 368 | 1 | 375 | 6.5e-136 | 493.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007022.t1 | MTR_0010s0370 | 34.694 | 147 | 95 | 1 | 35 | 180 | 34 | 180 | 3.29e-27 | 106 |
MS.gene007022.t1 | MTR_0010s0350 | 34.694 | 147 | 95 | 1 | 35 | 180 | 34 | 180 | 3.29e-27 | 106 |
MS.gene007022.t1 | MTR_6g045237 | 26.163 | 172 | 126 | 1 | 44 | 214 | 93 | 264 | 8.54e-14 | 72.8 |
MS.gene007022.t1 | MTR_6g033215 | 23.699 | 173 | 126 | 3 | 29 | 197 | 123 | 293 | 8.93e-14 | 71.6 |
MS.gene007022.t1 | MTR_0008s0180 | 35.135 | 111 | 37 | 2 | 74 | 184 | 19 | 94 | 2.00e-12 | 64.7 |
MS.gene007022.t1 | MTR_0008s0210 | 35.135 | 111 | 37 | 2 | 74 | 184 | 38 | 113 | 2.43e-12 | 64.7 |
MS.gene007022.t1 | MTR_2g061500 | 25.000 | 112 | 84 | 0 | 17 | 128 | 18 | 129 | 1.88e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007022.t1 | AT3G31430 | 26.744 | 172 | 118 | 4 | 46 | 214 | 145 | 311 | 3.27e-17 | 82.0 |
MS.gene007022.t1 | AT2G01050 | 24.631 | 203 | 147 | 4 | 13 | 214 | 59 | 256 | 4.12e-17 | 83.2 |
Find 0 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGACTTGAAAGATATTAAT+CGG | - | 51720:23688-23707 | MS.gene007022:CDS | 20.0% |
! | AAAACAAGCAAGAAAAACAA+AGG | - | 51720:24254-24273 | MS.gene007022:CDS | 25.0% |
! | AAACAAGCAAGAAAAACAAA+GGG | - | 51720:24255-24274 | MS.gene007022:CDS | 25.0% |
! | TTGAAAGATATTAATCGGAT+GGG | - | 51720:23693-23712 | MS.gene007022:CDS | 25.0% |
ACTTCCAAGGAAAAGAAATT+TGG | - | 51720:23781-23800 | MS.gene007022:CDS | 30.0% | |
CTTCCAAGGAAAAGAAATTT+GGG | - | 51720:23782-23801 | MS.gene007022:CDS | 30.0% | |
CTTGAAAGATATTAATCGGA+TGG | - | 51720:23692-23711 | MS.gene007022:CDS | 30.0% | |
!! | TGACCTTTGCTATTATTAGA+GGG | + | 51720:24038-24057 | None:intergenic | 30.0% |
AGAAAAACAAAGGGAGACAA+TGG | - | 51720:24264-24283 | MS.gene007022:CDS | 35.0% | |
AGGTAGTTTGAAAAATGGTG+AGG | - | 51720:24124-24143 | MS.gene007022:CDS | 35.0% | |
GAAAAACAAAGGGAGACAAT+GGG | - | 51720:24265-24284 | MS.gene007022:CDS | 35.0% | |
GACAACAATTGGAAGTGATT+TGG | - | 51720:24328-24347 | MS.gene007022:CDS | 35.0% | |
GGTAGTTTGAAAAATGGTGA+GGG | - | 51720:24125-24144 | MS.gene007022:CDS | 35.0% | |
TCCTTCAGATCTGAGTTTAA+GGG | + | 51720:23625-23644 | None:intergenic | 35.0% | |
TGGTTTCATACGTCATCTTA+GGG | + | 51720:23971-23990 | None:intergenic | 35.0% | |
TTCCTTCAGATCTGAGTTTA+AGG | + | 51720:23626-23645 | None:intergenic | 35.0% | |
TTGAAGAAGCCACTCAAAAA+GGG | - | 51720:23747-23766 | MS.gene007022:CDS | 35.0% | |
TTGGTTTCATACGTCATCTT+AGG | + | 51720:23972-23991 | None:intergenic | 35.0% | |
TTTCAAACAGACAATTACCC+AGG | - | 51720:23383-23402 | MS.gene007022:CDS | 35.0% | |
TTTGAAGAAGCCACTCAAAA+AGG | - | 51720:23746-23765 | MS.gene007022:CDS | 35.0% | |
! | TTGAAAGCACGAATGTTGTA+GGG | + | 51720:23369-23388 | None:intergenic | 35.0% |
! | TTTGAAAGCACGAATGTTGT+AGG | + | 51720:23370-23389 | None:intergenic | 35.0% |
!! | AAGGAACCTTTGAGATTGAA+GGG | - | 51720:24171-24190 | MS.gene007022:CDS | 35.0% |
!! | ACCTTTGCTATTATTAGAGG+GGG | + | 51720:24036-24055 | None:intergenic | 35.0% |
!! | CTGACCTTTGCTATTATTAG+AGG | + | 51720:24039-24058 | None:intergenic | 35.0% |
!! | GACCTTTGCTATTATTAGAG+GGG | + | 51720:24037-24056 | None:intergenic | 35.0% |
AACTCAGATACCAGGAAAGA+AGG | - | 51720:24059-24078 | MS.gene007022:CDS | 40.0% | |
AAGGAATTGCTAAGAAGCTG+GGG | - | 51720:23640-23659 | MS.gene007022:CDS | 40.0% | |
AGACGAAATCTCAGAAGATG+AGG | - | 51720:23299-23318 | MS.gene007022:CDS | 40.0% | |
AGAGGATGATACAATCACAG+TGG | - | 51720:23272-23291 | MS.gene007022:CDS | 40.0% | |
AGGTTTCTGTCAAAACTCCA+AGG | + | 51720:23513-23532 | None:intergenic | 40.0% | |
ATCATAAACCCTAACCCAGA+AGG | + | 51720:23598-23617 | None:intergenic | 40.0% | |
CAACCAACAGAGACAACAAT+TGG | - | 51720:24317-24336 | MS.gene007022:CDS | 40.0% | |
CAATTGTTGTCTCTGTTGGT+TGG | + | 51720:24319-24338 | None:intergenic | 40.0% | |
CCAAGGAAAAGAAATTTGGG+TGG | - | 51720:23785-23804 | MS.gene007022:CDS | 40.0% | |
CCTTCAGATCTGAGTTTAAG+GGG | + | 51720:23624-23643 | None:intergenic | 40.0% | |
CTTCAAATTCGCAACCAAGA+AGG | - | 51720:23461-23480 | MS.gene007022:CDS | 40.0% | |
CTTCCAATTGTTGTCTCTGT+TGG | + | 51720:24323-24342 | None:intergenic | 40.0% | |
GAAGGAATTGCTAAGAAGCT+GGG | - | 51720:23639-23658 | MS.gene007022:CDS | 40.0% | |
GCTGGAGGTAGTTTGAAAAA+TGG | - | 51720:24119-24138 | MS.gene007022:CDS | 40.0% | |
GTATCATCCTCTTTCAGATC+TGG | + | 51720:23264-23283 | None:intergenic | 40.0% | |
TAAGCAACCAGATCTGAAAG+AGG | - | 51720:23254-23273 | MS.gene007022:CDS | 40.0% | |
TCAGATCTTGTATGTCGACA+GGG | + | 51720:23425-23444 | None:intergenic | 40.0% | |
TCATAAACCCTAACCCAGAA+GGG | + | 51720:23597-23616 | None:intergenic | 40.0% | |
TCCCCCTCTAATAATAGCAA+AGG | - | 51720:24032-24051 | MS.gene007022:CDS | 40.0% | |
TCTTGGTTGCGAATTTGAAG+AGG | + | 51720:23461-23480 | None:intergenic | 40.0% | |
TGAAGAAGCCACTCAAAAAG+GGG | - | 51720:23748-23767 | MS.gene007022:CDS | 40.0% | |
TGAAGGAATTGCTAAGAAGC+TGG | - | 51720:23638-23657 | MS.gene007022:CDS | 40.0% | |
TGACAGAAACCTTGTCATCT+TGG | - | 51720:23521-23540 | MS.gene007022:CDS | 40.0% | |
TGGGCAAATTTCTCAGAATC+CGG | - | 51720:23712-23731 | MS.gene007022:CDS | 40.0% | |
TTCAGATCTTGTATGTCGAC+AGG | + | 51720:23426-23445 | None:intergenic | 40.0% | |
! | CCACCCAAATTTCTTTTCCT+TGG | + | 51720:23788-23807 | None:intergenic | 40.0% |
! | TGAAAGCACGAATGTTGTAG+GGG | + | 51720:23368-23387 | None:intergenic | 40.0% |
!! | AGGAACCTTTGAGATTGAAG+GGG | - | 51720:24172-24191 | MS.gene007022:CDS | 40.0% |
!! | ATCTTTGACCCCTTTTTGAG+TGG | + | 51720:23759-23778 | None:intergenic | 40.0% |
!! | CAAGGAACCTTTGAGATTGA+AGG | - | 51720:24170-24189 | MS.gene007022:CDS | 40.0% |
AAGGTCAGAACTCAGATACC+AGG | - | 51720:24051-24070 | MS.gene007022:CDS | 45.0% | |
ACAATGGGTCCGACAAAAGA+GGG | - | 51720:24280-24299 | MS.gene007022:CDS | 45.0% | |
ACCAAGAGAGAAACAAGCTC+TGG | - | 51720:23987-24006 | MS.gene007022:CDS | 45.0% | |
AGATACCAGGAAAGAAGGAG+GGG | - | 51720:24064-24083 | MS.gene007022:CDS | 45.0% | |
ATACTCGGTCCAAGATGACA+AGG | + | 51720:23533-23552 | None:intergenic | 45.0% | |
CAAATTCGCAACCAAGAAGG+AGG | - | 51720:23464-23483 | MS.gene007022:CDS | 45.0% | |
CAACAACATGAACAAGCTGC+TGG | - | 51720:24101-24120 | MS.gene007022:CDS | 45.0% | |
CAGATACCAGGAAAGAAGGA+GGG | - | 51720:24063-24082 | MS.gene007022:CDS | 45.0% | |
CCAAGAGAGAAACAAGCTCT+GGG | - | 51720:23988-24007 | MS.gene007022:CDS | 45.0% | |
CCCAATTTCTGCTTTGCTTG+CGG | - | 51720:23828-23847 | MS.gene007022:CDS | 45.0% | |
CCCCTTAAACTCAGATCTGA+AGG | - | 51720:23621-23640 | MS.gene007022:CDS | 45.0% | |
CCGCAAGCAAAGCAGAAATT+GGG | + | 51720:23831-23850 | None:intergenic | 45.0% | |
CGCAAGCAAAGCAGAAATTG+GGG | + | 51720:23830-23849 | None:intergenic | 45.0% | |
CTACAGTGAACTTGAGGAGA+AGG | - | 51720:23908-23927 | MS.gene007022:CDS | 45.0% | |
CTGTGAGGAAATTGAAGACC+AGG | - | 51720:23875-23894 | MS.gene007022:CDS | 45.0% | |
CTTCTCCTCAAGTTCACTGT+AGG | + | 51720:23910-23929 | None:intergenic | 45.0% | |
GGATGATACAATCACAGTGG+AGG | - | 51720:23275-23294 | MS.gene007022:CDS | 45.0% | |
GGGCAAATTTCTCAGAATCC+GGG | - | 51720:23713-23732 | MS.gene007022:CDS | 45.0% | |
GGGTCAAAGATCAACTTCCA+AGG | - | 51720:23768-23787 | MS.gene007022:CDS | 45.0% | |
GTATTCTCGCGTACCTTAGT+CGG | - | 51720:23324-23343 | MS.gene007022:CDS | 45.0% | |
TATTCTCGCGTACCTTAGTC+GGG | - | 51720:23325-23344 | MS.gene007022:CDS | 45.0% | |
TCAGATACCAGGAAAGAAGG+AGG | - | 51720:24062-24081 | MS.gene007022:CDS | 45.0% | |
TCATACGTCATCTTAGGGAG+TGG | + | 51720:23966-23985 | None:intergenic | 45.0% | |
TCTTCAAATCAAGAGCGACC+CGG | + | 51720:23734-23753 | None:intergenic | 45.0% | |
TGATGCCTACAGTGAACTTG+AGG | - | 51720:23902-23921 | MS.gene007022:CDS | 45.0% | |
TGGTGTGTAGAAATGGACCT+TGG | - | 51720:23493-23512 | MS.gene007022:CDS | 45.0% | |
TTGTATGTCGACAGGGTTTC+TGG | + | 51720:23418-23437 | None:intergenic | 45.0% | |
!! | AACCTTTGAGATTGAAGGGG+TGG | - | 51720:24175-24194 | MS.gene007022:CDS | 45.0% |
AAAGGTTCCTTGTGCAGCCT+TGG | + | 51720:24162-24181 | None:intergenic | 50.0% | |
AACAGACAATTACCCAGGCC+TGG | - | 51720:23388-23407 | MS.gene007022:CDS | 50.0% | |
AAGAAGCTGGGGAACATCGT+GGG | - | 51720:23651-23670 | MS.gene007022:CDS | 50.0% | |
AAGGTTCCTTGTGCAGCCTT+GGG | + | 51720:24161-24180 | None:intergenic | 50.0% | |
AATGGGTCCGACAAAAGAGG+GGG | - | 51720:24282-24301 | MS.gene007022:CDS | 50.0% | |
ATTCGCAACCAAGAAGGAGG+CGG | - | 51720:23467-23486 | MS.gene007022:CDS | 50.0% | |
ATTTCTGCTTTGCTTGCGGC+AGG | - | 51720:23832-23851 | MS.gene007022:CDS | 50.0% | |
CAACATGAACAAGCTGCTGG+AGG | - | 51720:24104-24123 | MS.gene007022:CDS | 50.0% | |
CAATGGGTCCGACAAAAGAG+GGG | - | 51720:24281-24300 | MS.gene007022:CDS | 50.0% | |
CACTGTAGGCATCATTGTCC+TGG | + | 51720:23896-23915 | None:intergenic | 50.0% | |
CTTAGTCGGGAAGATCTGGA+CGG | - | 51720:23338-23357 | MS.gene007022:CDS | 50.0% | |
GACAATGGGTCCGACAAAAG+AGG | - | 51720:24279-24298 | MS.gene007022:CDS | 50.0% | |
GCCGCAAGCAAAGCAGAAAT+TGG | + | 51720:23832-23851 | None:intergenic | 50.0% | |
GCGGATCTGGTGTGTAGAAA+TGG | - | 51720:23486-23505 | MS.gene007022:CDS | 50.0% | |
GCTGCTCATTGCCTGATACT+CGG | + | 51720:23548-23567 | None:intergenic | 50.0% | |
GTACCTTAGTCGGGAAGATC+TGG | - | 51720:23334-23353 | MS.gene007022:CDS | 50.0% | |
GTCATCTTGGACCGAGTATC+AGG | - | 51720:23534-23553 | MS.gene007022:CDS | 50.0% | |
TAAGAAGCTGGGGAACATCG+TGG | - | 51720:23650-23669 | MS.gene007022:CDS | 50.0% | |
! | AGGACCAAGCTTTTGGACCT+TGG | - | 51720:23928-23947 | MS.gene007022:CDS | 50.0% |
! | CCCAGAGCTTGTTTCTCTCT+TGG | + | 51720:23991-24010 | None:intergenic | 50.0% |
! | GAGGAGAAGGACCAAGCTTT+TGG | - | 51720:23921-23940 | MS.gene007022:CDS | 50.0% |
AACCAAGAAGGAGGCGGATC+TGG | - | 51720:23473-23492 | MS.gene007022:CDS | 55.0% | |
ATCAGGCAATGAGCAGCCGT+CGG | - | 51720:23551-23570 | MS.gene007022:CDS | 55.0% | |
CAGGAAAGAAGGAGGGGAAG+AGG | - | 51720:24070-24089 | MS.gene007022:CDS | 55.0% | |
CGAGACTGCTCCCAACGATT+CGG | + | 51720:24201-24220 | None:intergenic | 55.0% | |
CGCTCTCAACCTCCTCAACA+GGG | - | 51720:24219-24238 | MS.gene007022:CDS | 55.0% | |
CGTCCAGATCTTCCCGACTA+AGG | + | 51720:23340-23359 | None:intergenic | 55.0% | |
CTCTTCCCCTCCTTCTTTCC+TGG | + | 51720:24072-24091 | None:intergenic | 55.0% | |
GAAAGAAGGAGGGGAAGAGG+TGG | - | 51720:24073-24092 | MS.gene007022:CDS | 55.0% | |
GCTCTCAACCTCCTCAACAG+GGG | - | 51720:24220-24239 | MS.gene007022:CDS | 55.0% | |
GGCCACCCCTTCAATCTCAA+AGG | + | 51720:24180-24199 | None:intergenic | 55.0% | |
TCCTCAACAGGGGTGAGCAA+AGG | - | 51720:24230-24249 | MS.gene007022:CDS | 55.0% | |
TCCTTTGCTCACCCCTGTTG+AGG | + | 51720:24234-24253 | None:intergenic | 55.0% | |
TCGCTCTCAACCTCCTCAAC+AGG | - | 51720:24218-24237 | MS.gene007022:CDS | 55.0% | |
TGAGGGAGAAGTAGCACCCA+AGG | - | 51720:24142-24161 | MS.gene007022:CDS | 55.0% | |
TGCTTTGCTTGCGGCAGGAT+TGG | - | 51720:23837-23856 | MS.gene007022:CDS | 55.0% | |
TTTCCTCACAGTCGCGCATC+TGG | + | 51720:23866-23885 | None:intergenic | 55.0% | |
TTTGCTCACCCCTGTTGAGG+AGG | + | 51720:24231-24250 | None:intergenic | 55.0% | |
! | GACAGGGTTTCTGGATCTCC+AGG | + | 51720:23409-23428 | None:intergenic | 55.0% |
! | GTCTCTGTTGGTTGGCTCCT+CGG | + | 51720:24311-24330 | None:intergenic | 55.0% |
! | GTTTCTGGATCTCCAGGCCT+GGG | + | 51720:23403-23422 | None:intergenic | 55.0% |
! | TTAGGGAGTGGTGATGCACG+CGG | + | 51720:23954-23973 | None:intergenic | 55.0% |
ACACAGCGCCCTTCTGGGTT+AGG | - | 51720:23586-23605 | MS.gene007022:CDS | 60.0% | |
ACACCAGATGCGCGACTGTG+AGG | - | 51720:23860-23879 | MS.gene007022:CDS | 60.0% | |
CAATGAGCAGCCGTCGGAGA+TGG | - | 51720:23557-23576 | MS.gene007022:CDS | 60.0% | |
CACAGCGCCCTTCTGGGTTA+GGG | - | 51720:23587-23606 | MS.gene007022:CDS | 60.0% | |
CACCAGATCCGCCTCCTTCT+TGG | + | 51720:23478-23497 | None:intergenic | 60.0% | |
GAAGGGGTGGCCGAATCGTT+GGG | - | 51720:24188-24207 | MS.gene007022:CDS | 60.0% | |
GATGGACACAGCGCCCTTCT+GGG | - | 51720:23581-23600 | MS.gene007022:CDS | 60.0% | |
GCGGCCAAGGTCCAAAAGCT+TGG | + | 51720:23935-23954 | None:intergenic | 60.0% | |
GTAGCACCCAAGGCTGCACA+AGG | - | 51720:24152-24171 | MS.gene007022:CDS | 60.0% | |
GTGTCCATCGCCATCTCCGA+CGG | + | 51720:23570-23589 | None:intergenic | 60.0% | |
TGAAGGGGTGGCCGAATCGT+TGG | - | 51720:24187-24206 | MS.gene007022:CDS | 60.0% | |
! | GGTTTCTGGATCTCCAGGCC+TGG | + | 51720:23404-23423 | None:intergenic | 60.0% |
! | TCGGCCTCCCCCTCTTTTGT+CGG | + | 51720:24292-24311 | None:intergenic | 60.0% |
CGATGGACACAGCGCCCTTC+TGG | - | 51720:23580-23599 | MS.gene007022:CDS | 65.0% | |
GACAAAAGAGGGGGAGGCCG+AGG | - | 51720:24291-24310 | MS.gene007022:CDS | 65.0% | |
GGGTCCGACAAAAGAGGGGG+AGG | - | 51720:24285-24304 | MS.gene007022:CDS | 65.0% | |
! | AGTGGTGATGCACGCGGCCA+AGG | + | 51720:23948-23967 | None:intergenic | 65.0% |
GCAGCCGTCGGAGATGGCGA+TGG | - | 51720:23563-23582 | MS.gene007022:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51720 | gene | 23237 | 24350 | 23237 | ID=MS.gene007022 |
51720 | mRNA | 23237 | 24350 | 23237 | ID=MS.gene007022.t1;Parent=MS.gene007022 |
51720 | exon | 23237 | 24350 | 23237 | ID=MS.gene007022.t1.exon1;Parent=MS.gene007022.t1 |
51720 | CDS | 23237 | 24350 | 23237 | ID=cds.MS.gene007022.t1;Parent=MS.gene007022.t1 |
Gene Sequence |
Protein sequence |