AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45083

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45083.t1 MTR_3g053920 58.092 346 79 3 1 346 1 280 1.37e-132 382
MS.gene45083.t1 MTR_2g061500 86.822 129 17 0 1 129 1 129 1.66e-79 241
MS.gene45083.t1 MTR_4g103530 79.000 100 19 1 55 154 1 98 3.55e-53 175
MS.gene45083.t1 MTR_4g103530 46.875 64 34 0 251 314 119 182 1.57e-11 63.5
MS.gene45083.t1 MTR_7g011710 68.235 85 27 0 55 139 1 85 2.19e-36 130
MS.gene45083.t1 MTR_6g033215 36.994 173 107 1 29 199 122 294 4.23e-35 131
MS.gene45083.t1 MTR_0010s0370 36.158 177 103 3 8 177 4 177 4.29e-32 120
MS.gene45083.t1 MTR_0010s0350 36.158 177 103 3 8 177 4 177 4.29e-32 120
MS.gene45083.t1 MTR_8g463110 55.455 110 47 1 289 396 1 110 1.56e-23 103
MS.gene45083.t1 MTR_1g036720 31.481 108 72 1 7 112 3 110 4.04e-13 65.9
MS.gene45083.t1 MTR_7g089990 34.259 108 67 2 106 209 86 193 3.50e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45083.t1 AT2G17920 28.037 214 146 5 8 216 9 219 1.21e-20 92.0
MS.gene45083.t1 AT3G57587 29.730 185 122 4 36 216 39 219 1.69e-18 86.7
MS.gene45083.t1 AT5G36228 27.869 183 128 2 36 216 39 219 1.04e-17 84.3
MS.gene45083.t1 AT2G41590 30.986 142 94 2 77 216 80 219 1.64e-17 84.0
MS.gene45083.t1 AT2G13450 27.322 183 127 4 36 215 39 218 4.59e-16 79.7
MS.gene45083.t1 AT5G25200 27.064 218 143 6 8 216 9 219 7.22e-16 79.0
MS.gene45083.t1 AT5G18636 27.064 218 143 6 8 216 9 219 7.36e-16 79.0
MS.gene45083.t1 AT2G02103 28.108 185 125 4 36 216 39 219 9.27e-16 79.0
MS.gene45083.t1 AT3G47920 30.282 142 95 2 77 216 9 148 1.12e-15 77.4
MS.gene45083.t1 AT3G31430 28.261 184 122 5 36 215 134 311 2.26e-15 77.0
MS.gene45083.t1 AT4G02000 28.676 136 93 2 83 216 6 139 9.27e-14 72.0

Find 112 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGAACCATATTGATTTC+TGG 0.095893 5.3:-23941871 MS.gene45083:CDS
TTCTAGCTAACACTGCATTT+TGG 0.177584 5.3:+23941300 None:intergenic
CGGTTTCAGGTTCGGAATTC+AGG 0.206430 5.3:+23942155 None:intergenic
GTCCTTGATCATTGCTTAAT+TGG 0.209171 5.3:-23942127 MS.gene45083:CDS
ATTTGCTGCTGAAGGGGATA+TGG 0.237024 5.3:-23941066 MS.gene45083:CDS
TCAAGGACAGCAGCGGTTTC+AGG 0.252945 5.3:+23942142 None:intergenic
AGACATACGCTCGCTGAAAT+AGG 0.266771 5.3:+23942072 None:intergenic
CCTATGCCTTGACCTACTTT+TGG 0.279092 5.3:+23941812 None:intergenic
GCTCGCTGAAATAGGCAAAT+TGG 0.281041 5.3:+23942080 None:intergenic
CTGATGATGGTGTTCGCAAC+TGG 0.302291 5.3:-23941550 MS.gene45083:CDS
TGCCACTAACCGTTGGTTAC+AGG 0.307139 5.3:-23941486 MS.gene45083:CDS
CTCCGCTTCTAGCATGTTTA+CGG 0.317910 5.3:-23941216 MS.gene45083:CDS
ATAGTTCCTATATGAGGGTT+AGG 0.324605 5.3:-23941742 MS.gene45083:CDS
CAGGTTCGGAATTCAGGTTT+AGG 0.328112 5.3:+23942161 None:intergenic
AGGTTCGGAATTCAGGTTTA+GGG 0.351150 5.3:+23942162 None:intergenic
TGCGGCTTGGTTGCAGGAAT+AGG 0.354145 5.3:+23941461 None:intergenic
GCGGCTTGGTTGCAGGAATA+GGG 0.357026 5.3:+23941462 None:intergenic
GTATGTTGCGGCTTGGTTGC+AGG 0.370665 5.3:+23941455 None:intergenic
GACAGCAGCGGTTTCAGGTT+CGG 0.394529 5.3:+23942147 None:intergenic
TCCGCTTCTAGCATGTTTAC+GGG 0.395423 5.3:-23941215 MS.gene45083:CDS
CAACTCAGGACACACTTTAT+CGG 0.407301 5.3:+23941586 None:intergenic
TGGCGTGTCCGTGCTACTAA+TGG 0.411255 5.3:-23941683 MS.gene45083:CDS
CTTGGATCCAGAAATCAATA+TGG 0.417474 5.3:+23941864 None:intergenic
CAAGTCCATGGTCTACCTTT+CGG 0.422363 5.3:-23941845 MS.gene45083:CDS
CCATTCATAGTTCCTATATG+AGG 0.434601 5.3:-23941748 MS.gene45083:CDS
ACGAAAGTAGGGACAACACC+GGG 0.435142 5.3:+23941896 None:intergenic
GTTCCAATCCGATGTACAAC+TGG 0.438690 5.3:+23941512 None:intergenic
TGTCACAGGTGTGGTTTGAT+TGG 0.440586 5.3:-23941614 MS.gene45083:CDS
CTGTTATCTTCTTCTTCCAC+AGG 0.453028 5.3:-23941242 MS.gene45083:CDS
TAGTTCCTATATGAGGGTTA+GGG 0.460136 5.3:-23941741 MS.gene45083:CDS
TCAGACCCTCTAGGTTAAGA+TGG 0.460647 5.3:+23942206 None:intergenic
ACGGGGCGTCAAACGGTGCT+TGG 0.464938 5.3:-23941197 MS.gene45083:CDS
AAACCAGTTGTACATCGGAT+TGG 0.465918 5.3:-23941515 MS.gene45083:CDS
GTAACCGTTACCTTCTTGCC+TGG 0.476617 5.3:+23942037 None:intergenic
TTTGCTGCTGAAGGGGATAT+GGG 0.478487 5.3:-23941065 MS.gene45083:CDS
CAATGGTAGCAGCACCTGCT+TGG 0.483726 5.3:+23941429 None:intergenic
TTTGAACTTGATGCTGATGA+TGG 0.484059 5.3:-23941563 MS.gene45083:CDS
CAAGCAGGTGCTGCTACCAT+TGG 0.499378 5.3:-23941428 MS.gene45083:CDS
GACATAGCTGCTGAAGGCAC+TGG 0.500374 5.3:-23941401 MS.gene45083:CDS
GTCCTGTAACCAACGGTTAG+TGG 0.500457 5.3:+23941484 None:intergenic
GGAGAAACATTTGCTGCTGA+AGG 0.501019 5.3:-23941074 MS.gene45083:CDS
TGGTTCAGAGGAACGAAAGT+AGG 0.503984 5.3:+23941884 None:intergenic
CCTCATATAGGAACTATGAA+TGG 0.506570 5.3:+23941748 None:intergenic
CGAAAGGTAGACCATGGACT+TGG 0.507690 5.3:+23941846 None:intergenic
TGGTAGCAGCACCTGCTTGG+TGG 0.508317 5.3:+23941432 None:intergenic
AGCAGCTATGTCACGGCCAA+TGG 0.511991 5.3:+23941412 None:intergenic
AATGCAGTGTTAGCTAGAAA+AGG 0.514285 5.3:-23941296 MS.gene45083:CDS
AGGAACTATGAATGGAGTTA+CGG 0.517846 5.3:+23941756 None:intergenic
CATGTTTACGGGGCGTCAAA+CGG 0.519715 5.3:-23941204 MS.gene45083:CDS
ATGTCTCGTGCATGGAAGCC+AGG 0.520191 5.3:-23942055 MS.gene45083:CDS
TCATAGCAGTAAGTTGAGAC+TGG 0.522678 5.3:+23941342 None:intergenic
TGATGATGGTGTTCGCAACT+GGG 0.534002 5.3:-23941549 MS.gene45083:CDS
AGCAACCCTAACCCTCATAT+AGG 0.534207 5.3:+23941736 None:intergenic
AAATTTATATATGAGAAACT+TGG 0.536891 5.3:-23941644 MS.gene45083:CDS
AGATGATGAACAAAATGTAA+TGG 0.536894 5.3:-23940973 None:intergenic
CCCTCTAGGTTAAGATGGGA+AGG 0.537518 5.3:+23942211 None:intergenic
GGCTTTATCCAACCAAAAGT+AGG 0.537710 5.3:-23941824 MS.gene45083:CDS
TTCCACTGCTGACATATATG+AGG 0.542902 5.3:-23941147 MS.gene45083:CDS
TTGGTGGGTATGTTGCGGCT+TGG 0.543829 5.3:+23941448 None:intergenic
GAGAAACATTTGCTGCTGAA+GGG 0.548982 5.3:-23941073 MS.gene45083:CDS
GGGTCTGACTTTGTCTGAAG+AGG 0.555640 5.3:-23942191 MS.gene45083:CDS
CAGACAAAGTCAGACCCTCT+AGG 0.556434 5.3:+23942197 None:intergenic
GGTTCAGAGGAACGAAAGTA+GGG 0.556972 5.3:+23941885 None:intergenic
CCGCAACATACCCACCAAGC+AGG 0.557074 5.3:-23941443 MS.gene45083:CDS
TGCCTTCAGCAGCTATGTCA+CGG 0.557138 5.3:+23941405 None:intergenic
AGTATGCTGCCTCTTCAGAA+TGG 0.558138 5.3:-23941095 MS.gene45083:CDS
GGTAGCAGCACCTGCTTGGT+GGG 0.559802 5.3:+23941433 None:intergenic
CATTCATAGTTCCTATATGA+GGG 0.563726 5.3:-23941747 MS.gene45083:CDS
GAGACTGGAGAACAAGCATT+CGG 0.563805 5.3:+23941357 None:intergenic
CAGACCCTCTAGGTTAAGAT+GGG 0.569160 5.3:+23942207 None:intergenic
AATGTTTCTCCATTCTGAAG+AGG 0.571792 5.3:+23941086 None:intergenic
CATATATGAGGAGAATGGCT+CGG 0.579792 5.3:-23941135 MS.gene45083:CDS
ATCCAACCAAAAGTAGGTCA+AGG 0.581878 5.3:-23941818 MS.gene45083:CDS
GCATTCTTGATGAAGGTCCA+TGG 0.587477 5.3:-23941958 MS.gene45083:CDS
GGTCTGACTTTGTCTGAAGA+GGG 0.587782 5.3:-23942190 MS.gene45083:CDS
GACCAATTAAGCAATGATCA+AGG 0.587937 5.3:+23942125 None:intergenic
GATTTCTGGATCCAAGTCCA+TGG 0.588200 5.3:-23941857 MS.gene45083:CDS
GCTGACATATATGAGGAGAA+TGG 0.589878 5.3:-23941140 MS.gene45083:CDS
TGCATGGAAGCCAGGCAAGA+AGG 0.592817 5.3:-23942047 MS.gene45083:CDS
GAACAGCTGCCACTAACCGT+TGG 0.593106 5.3:-23941493 MS.gene45083:CDS
GTGTTAGCTAGAAAAGGTAA+TGG 0.593233 5.3:-23941290 MS.gene45083:CDS
TGAAAATTGTCATACAACCA+TGG 0.596313 5.3:+23941941 None:intergenic
ATTTGAAACCAGTTGTACAT+CGG 0.601273 5.3:-23941520 MS.gene45083:CDS
CAGAAATCAATATGGTTCAG+AGG 0.604767 5.3:+23941872 None:intergenic
GCTGCACGCATTCTTGATGA+AGG 0.604903 5.3:-23941965 MS.gene45083:CDS
AGAAACATTTGCTGCTGAAG+GGG 0.608288 5.3:-23941072 MS.gene45083:CDS
CCTTCCCATCTTAACCTAGA+GGG 0.608486 5.3:-23942211 MS.gene45083:CDS
GCGAGCGTATGTCTCGTGCA+TGG 0.610479 5.3:-23942063 MS.gene45083:CDS
GAAGCCAGGCAAGAAGGTAA+CGG 0.615335 5.3:-23942041 MS.gene45083:CDS
GCTATGGACCGTATCTCCCC+CGG 0.619501 5.3:-23941914 MS.gene45083:CDS
GGCCGTGACATAGCTGCTGA+AGG 0.620040 5.3:-23941407 MS.gene45083:CDS
CCAAAAGTAGGTCAAGGCAT+AGG 0.620618 5.3:-23941812 MS.gene45083:CDS
GCTAGAAGCGGAGGTACCTG+TGG 0.620644 5.3:+23941226 None:intergenic
CCCCGTAAACATGCTAGAAG+CGG 0.623613 5.3:+23941214 None:intergenic
CTCCTCATATATGTCAGCAG+TGG 0.624189 5.3:+23941145 None:intergenic
TCCTTCCCATCTTAACCTAG+AGG 0.631158 5.3:-23942212 MS.gene45083:CDS
AACGGTGCTTGGTTTACCTG+CGG 0.634503 5.3:-23941186 MS.gene45083:CDS
ATTGGATTTCACGATCAGCA+AGG 0.635024 5.3:+23942098 None:intergenic
GAAAGTAGGGACAACACCGG+GGG 0.639635 5.3:+23941898 None:intergenic
AACGAAAGTAGGGACAACAC+CGG 0.639858 5.3:+23941895 None:intergenic
GCATCAAGTTCAAACAACTC+AGG 0.644756 5.3:+23941572 None:intergenic
CCTGCTTGGTGGGTATGTTG+CGG 0.644912 5.3:+23941443 None:intergenic
CGAAAGTAGGGACAACACCG+GGG 0.645629 5.3:+23941897 None:intergenic
CAAACTCTCCATTAGTAGCA+CGG 0.647404 5.3:+23941675 None:intergenic
TAAAGCCGAAAGGTAGACCA+TGG 0.647958 5.3:+23941840 None:intergenic
CCGCTTCTAGCATGTTTACG+GGG 0.659154 5.3:-23941214 MS.gene45083:CDS
TTTGGTTGGATAAAGCCGAA+AGG 0.666665 5.3:+23941830 None:intergenic
CGTAAACATGCTAGAAGCGG+AGG 0.670490 5.3:+23941217 None:intergenic
GAATAGGGTCCTGTAACCAA+CGG 0.675018 5.3:+23941477 None:intergenic
GTGCAGCATCAACTTTGTGA+TGG 0.679791 5.3:+23941981 None:intergenic
GATGATGGTGTTCGCAACTG+GGG 0.687202 5.3:-23941548 MS.gene45083:CDS
GCAATGATCAAGGACAGCAG+CGG 0.722288 5.3:+23942135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATATATGAGAAACT+TGG - chr5.3:23941549-23941568 MS.gene45083:CDS 15.0%
!! ACATTTTGTTCATCATCTAT+AGG + chr5.3:23942218-23942237 None:intergenic 25.0%
!! TGACAATTTTCATATTGCTA+TGG - chr5.3:23941263-23941282 MS.gene45083:CDS 25.0%
CATTCATAGTTCCTATATGA+GGG - chr5.3:23941446-23941465 MS.gene45083:CDS 30.0%
TGAAAATTGTCATACAACCA+TGG + chr5.3:23941255-23941274 None:intergenic 30.0%
! ATTTGAAACCAGTTGTACAT+CGG - chr5.3:23941673-23941692 MS.gene45083:CDS 30.0%
! GATATGGGCAATTTTGTAAT+AGG - chr5.3:23942143-23942162 MS.gene45083:CDS 30.0%
AATGCAGTGTTAGCTAGAAA+AGG - chr5.3:23941897-23941916 MS.gene45083:CDS 35.0%
AGGAACTATGAATGGAGTTA+CGG + chr5.3:23941440-23941459 None:intergenic 35.0%
ATAGGATCAAGTGTTAGTCA+TGG - chr5.3:23942161-23942180 MS.gene45083:CDS 35.0%
ATAGTTCCTATATGAGGGTT+AGG - chr5.3:23941451-23941470 MS.gene45083:CDS 35.0%
CAGAAATCAATATGGTTCAG+AGG + chr5.3:23941324-23941343 None:intergenic 35.0%
CCATTCATAGTTCCTATATG+AGG - chr5.3:23941445-23941464 MS.gene45083:CDS 35.0%
CCTCATATAGGAACTATGAA+TGG + chr5.3:23941448-23941467 None:intergenic 35.0%
CTTGGATCCAGAAATCAATA+TGG + chr5.3:23941332-23941351 None:intergenic 35.0%
GACCAATTAAGCAATGATCA+AGG + chr5.3:23941071-23941090 None:intergenic 35.0%
GCAGTGGAATCATTGAAAAA+AGG + chr5.3:23942035-23942054 None:intergenic 35.0%
GTCCTTGATCATTGCTTAAT+TGG - chr5.3:23941066-23941085 MS.gene45083:CDS 35.0%
GTGTTAGCTAGAAAAGGTAA+TGG - chr5.3:23941903-23941922 MS.gene45083:CDS 35.0%
TAGGATCAAGTGTTAGTCAT+GGG - chr5.3:23942162-23942181 MS.gene45083:CDS 35.0%
TAGTTCCTATATGAGGGTTA+GGG - chr5.3:23941452-23941471 MS.gene45083:CDS 35.0%
TTTGAACTTGATGCTGATGA+TGG - chr5.3:23941630-23941649 MS.gene45083:CDS 35.0%
! AATGTTTCTCCATTCTGAAG+AGG + chr5.3:23942110-23942129 None:intergenic 35.0%
! TCTAGCTAACACTGCATTTT+GGG + chr5.3:23941895-23941914 None:intergenic 35.0%
!! CTCTGAACCATATTGATTTC+TGG - chr5.3:23941322-23941341 MS.gene45083:CDS 35.0%
!! TTCTAGCTAACACTGCATTT+TGG + chr5.3:23941896-23941915 None:intergenic 35.0%
!!! AACTTGGTGTATTTTGTCAC+AGG - chr5.3:23941565-23941584 MS.gene45083:CDS 35.0%
!!! AAGTTTTTTAGGCACTCTCA+AGG - chr5.3:23941404-23941423 MS.gene45083:CDS 35.0%
!!! CAAGGCATAGGAAGTTTTTT+AGG - chr5.3:23941393-23941412 MS.gene45083:CDS 35.0%
AAACCAGTTGTACATCGGAT+TGG - chr5.3:23941678-23941697 MS.gene45083:CDS 40.0%
AGGATCAAGTGTTAGTCATG+GGG - chr5.3:23942163-23942182 MS.gene45083:CDS 40.0%
ATCCAACCAAAAGTAGGTCA+AGG - chr5.3:23941375-23941394 MS.gene45083:CDS 40.0%
ATTGGATTTCACGATCAGCA+AGG + chr5.3:23941098-23941117 None:intergenic 40.0%
CAAACTCTCCATTAGTAGCA+CGG + chr5.3:23941521-23941540 None:intergenic 40.0%
CAACTCAGGACACACTTTAT+CGG + chr5.3:23941610-23941629 None:intergenic 40.0%
CATATATGAGGAGAATGGCT+CGG - chr5.3:23942058-23942077 MS.gene45083:CDS 40.0%
CTGTTATCTTCTTCTTCCAC+AGG - chr5.3:23941951-23941970 MS.gene45083:CDS 40.0%
GCATCAAGTTCAAACAACTC+AGG + chr5.3:23941624-23941643 None:intergenic 40.0%
GCTGACATATATGAGGAGAA+TGG - chr5.3:23942053-23942072 MS.gene45083:CDS 40.0%
TTCCACTGCTGACATATATG+AGG - chr5.3:23942046-23942065 MS.gene45083:CDS 40.0%
TTTGGTTGGATAAAGCCGAA+AGG + chr5.3:23941366-23941385 None:intergenic 40.0%
! AGAAACATTTGCTGCTGAAG+GGG - chr5.3:23942121-23942140 MS.gene45083:CDS 40.0%
! AGGTTCGGAATTCAGGTTTA+GGG + chr5.3:23941034-23941053 None:intergenic 40.0%
! GAGAAACATTTGCTGCTGAA+GGG - chr5.3:23942120-23942139 MS.gene45083:CDS 40.0%
! GGCTTTATCCAACCAAAAGT+AGG - chr5.3:23941369-23941388 MS.gene45083:CDS 40.0%
! TCATAGCAGTAAGTTGAGAC+TGG + chr5.3:23941854-23941873 None:intergenic 40.0%
AACGAAAGTAGGGACAACAC+CGG + chr5.3:23941301-23941320 None:intergenic 45.0%
AGACATACGCTCGCTGAAAT+AGG + chr5.3:23941124-23941143 None:intergenic 45.0%
AGCAACCCTAACCCTCATAT+AGG + chr5.3:23941460-23941479 None:intergenic 45.0%
AGTATGCTGCCTCTTCAGAA+TGG - chr5.3:23942098-23942117 MS.gene45083:CDS 45.0%
ATCAAGTGTTAGTCATGGGG+GGG - chr5.3:23942166-23942185 MS.gene45083:CDS 45.0%
CAAGTCCATGGTCTACCTTT+CGG - chr5.3:23941348-23941367 MS.gene45083:CDS 45.0%
CAGACCCTCTAGGTTAAGAT+GGG + chr5.3:23940989-23941008 None:intergenic 45.0%
CCAAAAGTAGGTCAAGGCAT+AGG - chr5.3:23941381-23941400 MS.gene45083:CDS 45.0%
CCTTCCCATCTTAACCTAGA+GGG - chr5.3:23940982-23941001 MS.gene45083:intron 45.0%
CTCCGCTTCTAGCATGTTTA+CGG - chr5.3:23941977-23941996 MS.gene45083:CDS 45.0%
CTCCTCATATATGTCAGCAG+TGG + chr5.3:23942051-23942070 None:intergenic 45.0%
GAATAGGGTCCTGTAACCAA+CGG + chr5.3:23941719-23941738 None:intergenic 45.0%
GAGACTGGAGAACAAGCATT+CGG + chr5.3:23941839-23941858 None:intergenic 45.0%
GATCAAGTGTTAGTCATGGG+GGG - chr5.3:23942165-23942184 MS.gene45083:CDS 45.0%
GCATTCTTGATGAAGGTCCA+TGG - chr5.3:23941235-23941254 MS.gene45083:CDS 45.0%
GCTCGCTGAAATAGGCAAAT+TGG + chr5.3:23941116-23941135 None:intergenic 45.0%
GGATCAAGTGTTAGTCATGG+GGG - chr5.3:23942164-23942183 MS.gene45083:CDS 45.0%
GGTCTGACTTTGTCTGAAGA+GGG - chr5.3:23941003-23941022 MS.gene45083:intron 45.0%
GGTTCAGAGGAACGAAAGTA+GGG + chr5.3:23941311-23941330 None:intergenic 45.0%
GTGCAGCATCAACTTTGTGA+TGG + chr5.3:23941215-23941234 None:intergenic 45.0%
GTTCCAATCCGATGTACAAC+TGG + chr5.3:23941684-23941703 None:intergenic 45.0%
TAAAGCCGAAAGGTAGACCA+TGG + chr5.3:23941356-23941375 None:intergenic 45.0%
TCAGACCCTCTAGGTTAAGA+TGG + chr5.3:23940990-23941009 None:intergenic 45.0%
TCATTGAAAAAAGGAGCCGC+AGG + chr5.3:23942026-23942045 None:intergenic 45.0%
TCCGCTTCTAGCATGTTTAC+GGG - chr5.3:23941978-23941997 MS.gene45083:CDS 45.0%
TCCTTCCCATCTTAACCTAG+AGG - chr5.3:23940981-23941000 MS.gene45083:intron 45.0%
TGGTTCAGAGGAACGAAAGT+AGG + chr5.3:23941312-23941331 None:intergenic 45.0%
TGTCACAGGTGTGGTTTGAT+TGG - chr5.3:23941579-23941598 MS.gene45083:CDS 45.0%
TTTGCTGCTGAAGGGGATAT+GGG - chr5.3:23942128-23942147 MS.gene45083:CDS 45.0%
! ATTTGCTGCTGAAGGGGATA+TGG - chr5.3:23942127-23942146 MS.gene45083:CDS 45.0%
! CAGGTTCGGAATTCAGGTTT+AGG + chr5.3:23941035-23941054 None:intergenic 45.0%
! CCTATGCCTTGACCTACTTT+TGG + chr5.3:23941384-23941403 None:intergenic 45.0%
! GATTTCTGGATCCAAGTCCA+TGG - chr5.3:23941336-23941355 MS.gene45083:CDS 45.0%
! GGAGAAACATTTGCTGCTGA+AGG - chr5.3:23942119-23942138 MS.gene45083:CDS 45.0%
! GGTGTATTTTGTCACAGGTG+TGG - chr5.3:23941570-23941589 MS.gene45083:CDS 45.0%
!! TGATGATGGTGTTCGCAACT+GGG - chr5.3:23941644-23941663 MS.gene45083:CDS 45.0%
!! TGCCTTGACCTACTTTTGGT+TGG + chr5.3:23941380-23941399 None:intergenic 45.0%
!!! ACACGCCACTCTTTTTTCAG+CGG + chr5.3:23941498-23941517 None:intergenic 45.0%
AACGGTGCTTGGTTTACCTG+CGG - chr5.3:23942007-23942026 MS.gene45083:CDS 50.0%
ACGAAAGTAGGGACAACACC+GGG + chr5.3:23941300-23941319 None:intergenic 50.0%
CAGACAAAGTCAGACCCTCT+AGG + chr5.3:23940999-23941018 None:intergenic 50.0%
CCCCGTAAACATGCTAGAAG+CGG + chr5.3:23941982-23942001 None:intergenic 50.0%
CCCTCTAGGTTAAGATGGGA+AGG + chr5.3:23940985-23941004 None:intergenic 50.0%
CCGCTTCTAGCATGTTTACG+GGG - chr5.3:23941979-23941998 MS.gene45083:CDS 50.0%
CGAAAGGTAGACCATGGACT+TGG + chr5.3:23941350-23941369 None:intergenic 50.0%
CGTAAACATGCTAGAAGCGG+AGG + chr5.3:23941979-23941998 None:intergenic 50.0%
CTGCTCCGCTGAAAAAAGAG+TGG - chr5.3:23941490-23941509 MS.gene45083:CDS 50.0%
GAAGCCAGGCAAGAAGGTAA+CGG - chr5.3:23941152-23941171 MS.gene45083:CDS 50.0%
GCAATGATCAAGGACAGCAG+CGG + chr5.3:23941061-23941080 None:intergenic 50.0%
GCTGCACGCATTCTTGATGA+AGG - chr5.3:23941228-23941247 MS.gene45083:CDS 50.0%
GGGTCTGACTTTGTCTGAAG+AGG - chr5.3:23941002-23941021 MS.gene45083:intron 50.0%
GTAACCGTTACCTTCTTGCC+TGG + chr5.3:23941159-23941178 None:intergenic 50.0%
GTCCTGTAACCAACGGTTAG+TGG + chr5.3:23941712-23941731 None:intergenic 50.0%
TGCCTTCAGCAGCTATGTCA+CGG + chr5.3:23941791-23941810 None:intergenic 50.0%
! CATGTTTACGGGGCGTCAAA+CGG - chr5.3:23941989-23942008 MS.gene45083:CDS 50.0%
! GATGATGGTGTTCGCAACTG+GGG - chr5.3:23941645-23941664 MS.gene45083:CDS 50.0%
! TGCCACTAACCGTTGGTTAC+AGG - chr5.3:23941707-23941726 MS.gene45083:CDS 50.0%
!! CGGTTTCAGGTTCGGAATTC+AGG + chr5.3:23941041-23941060 None:intergenic 50.0%
!! CTGATGATGGTGTTCGCAAC+TGG - chr5.3:23941643-23941662 MS.gene45083:CDS 50.0%
AGCAGCTATGTCACGGCCAA+TGG + chr5.3:23941784-23941803 None:intergenic 55.0%
ATGTCTCGTGCATGGAAGCC+AGG - chr5.3:23941138-23941157 MS.gene45083:CDS 55.0%
CAATGGTAGCAGCACCTGCT+TGG + chr5.3:23941767-23941786 None:intergenic 55.0%
CGAAAGTAGGGACAACACCG+GGG + chr5.3:23941299-23941318 None:intergenic 55.0%
GAAAGTAGGGACAACACCGG+GGG + chr5.3:23941298-23941317 None:intergenic 55.0%
GAACAGCTGCCACTAACCGT+TGG - chr5.3:23941700-23941719 MS.gene45083:CDS 55.0%
TCAAGGACAGCAGCGGTTTC+AGG + chr5.3:23941054-23941073 None:intergenic 55.0%
TGCATGGAAGCCAGGCAAGA+AGG - chr5.3:23941146-23941165 MS.gene45083:CDS 55.0%
! CCTGCTTGGTGGGTATGTTG+CGG + chr5.3:23941753-23941772 None:intergenic 55.0%
! GACATAGCTGCTGAAGGCAC+TGG - chr5.3:23941792-23941811 MS.gene45083:CDS 55.0%
! TGGCGTGTCCGTGCTACTAA+TGG - chr5.3:23941510-23941529 MS.gene45083:CDS 55.0%
! TTGGTGGGTATGTTGCGGCT+TGG + chr5.3:23941748-23941767 None:intergenic 55.0%
!! CAAGCAGGTGCTGCTACCAT+TGG - chr5.3:23941765-23941784 MS.gene45083:CDS 55.0%
!! GACAGCAGCGGTTTCAGGTT+CGG + chr5.3:23941049-23941068 None:intergenic 55.0%
!! GCGGCTTGGTTGCAGGAATA+GGG + chr5.3:23941734-23941753 None:intergenic 55.0%
!! GTATGTTGCGGCTTGGTTGC+AGG + chr5.3:23941741-23941760 None:intergenic 55.0%
!! TGCGGCTTGGTTGCAGGAAT+AGG + chr5.3:23941735-23941754 None:intergenic 55.0%
CCGCAACATACCCACCAAGC+AGG - chr5.3:23941750-23941769 MS.gene45083:CDS 60.0%
GCGAGCGTATGTCTCGTGCA+TGG - chr5.3:23941130-23941149 MS.gene45083:CDS 60.0%
GCTATGGACCGTATCTCCCC+CGG - chr5.3:23941279-23941298 MS.gene45083:CDS 60.0%
GGACAACACCGGGGGAGATA+CGG + chr5.3:23941290-23941309 None:intergenic 60.0%
GGCCGTGACATAGCTGCTGA+AGG - chr5.3:23941786-23941805 MS.gene45083:CDS 60.0%
GGTAGCAGCACCTGCTTGGT+GGG + chr5.3:23941763-23941782 None:intergenic 60.0%
TGGTAGCAGCACCTGCTTGG+TGG + chr5.3:23941764-23941783 None:intergenic 60.0%
!! GCTAGAAGCGGAGGTACCTG+TGG + chr5.3:23941970-23941989 None:intergenic 60.0%
! ACGGGGCGTCAAACGGTGCT+TGG - chr5.3:23941996-23942015 MS.gene45083:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 23940976 23942239 23940976 ID=MS.gene45083
chr5.3 mRNA 23940976 23942239 23940976 ID=MS.gene45083.t1;Parent=MS.gene45083
chr5.3 exon 23941058 23942239 23941058 ID=MS.gene45083.t1.exon1;Parent=MS.gene45083.t1
chr5.3 CDS 23941058 23942239 23941058 ID=cds.MS.gene45083.t1;Parent=MS.gene45083.t1
chr5.3 exon 23940976 23940993 23940976 ID=MS.gene45083.t1.exon2;Parent=MS.gene45083.t1
chr5.3 CDS 23940976 23940993 23940976 ID=cds.MS.gene45083.t1;Parent=MS.gene45083.t1
Gene Sequence

>MS.gene45083

ATGGATCCTTCCCATCTTAACCTAGAGGGTCTGACTTTGTCTGAAGAGGGTCTAACCCTAAACCTGAATTCCGAACCTGAAACCGCTGCTGTCCTTGATCATTGCTTAATTGGTCGAGTCCTTGCTGATCGTGAAATCCAATTTGCCTATTTCAGCGAGCGTATGTCTCGTGCATGGAAGCCAGGCAAGAAGGTAACGGTTACTAAGTCTGTGTCTGACTGTTACTTGTTTCAATTCCATCACAAAGTTGATGCTGCACGCATTCTTGATGAAGGTCCATGGTTGTATGACAATTTTCATATTGCTATGGACCGTATCTCCCCCGGTGTTGTCCCTACTTTCGTTCCTCTGAACCATATTGATTTCTGGATCCAAGTCCATGGTCTACCTTTCGGCTTTATCCAACCAAAAGTAGGTCAAGGCATAGGAAGTTTTTTAGGCACTCTCAAGGCTTATGATGACCGTAACTCCATTCATAGTTCCTATATGAGGGTTAGGGTTGCTATTGATGTCACTGCTCCGCTGAAAAAAGAGTGGCGTGTCCGTGCTACTAATGGAGAGTTTGTTACTGTCAAATTTATATATGAGAAACTTGGTGTATTTTGTCACAGGTGTGGTTTGATTGGACATACCGATAAAGTGTGTCCTGAGTTGTTTGAACTTGATGCTGATGATGGTGTTCGCAACTGGGGTGCTGATTTGAAACCAGTTGTACATCGGATTGGAACAGCTGCCACTAACCGTTGGTTACAGGACCCTATTCCTGCAACCAAGCCGCAACATACCCACCAAGCAGGTGCTGCTACCATTGGCCGTGACATAGCTGCTGAAGGCACTGGAAATTCTGTTAATTTCAATGACCGAATGCTTGTTCTCCAGTCTCAACTTACTGCTATGAAACATGATGTGCTTGCTGCCCAAAATGCAGTGTTAGCTAGAAAAGGTAATGGTGTGAATTCTGTTTGCAAAGTGCAGCTGTTATCTTCTTCTTCCACAGGTACCTCCGCTTCTAGCATGTTTACGGGGCGTCAAACGGTGCTTGGTTTACCTGCGGCTCCTTTTTTCAATGATTCCACTGCTGACATATATGAGGAGAATGGCTCGGCTTTGAAGAAAAGAAAGAGTATGCTGCCTCTTCAGAATGGAGAAACATTTGCTGCTGAAGGGGATATGGGCAATTTTGTAATAGGATCAAGTGTTAGTCATGGGGGGGATTCTGATATTAATGTAATTGCTGAACCTATAGATGATGAACAAAATGTAA
Protein sequence

>MS.gene45083.t1

MDPSHLNLEGLTLSEEGLTLNLNSEPETAAVLDHCLIGRVLADREIQFAYFSERMSRAWKPGKKVTVTKSVSDCYLFQFHHKVDAARILDEGPWLYDNFHIAMDRISPGVVPTFVPLNHIDFWIQVHGLPFGFIQPKVGQGIGSFLGTLKAYDDRNSIHSSYMRVRVAIDVTAPLKKEWRVRATNGEFVTVKFIYEKLGVFCHRCGLIGHTDKVCPELFELDADDGVRNWGADLKPVVHRIGTAATNRWLQDPIPATKPQHTHQAGAATIGRDIAAEGTGNSVNFNDRMLVLQSQLTAMKHDVLAAQNAVLARKGNGVNSVCKVQLLSSSSTGTSASSMFTGRQTVLGLPAAPFFNDSTADIYEENGSALKKRKSMLPLQNGETFAAEGDMGNFMMNKM