Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35175.t1 | GAU41105.1 | 51.5 | 377 | 169 | 6 | 1 | 372 | 1 | 368 | 6.40E-97 | 364.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35175.t1 | A0A2Z6NYN8 | 51.5 | 377 | 169 | 6 | 1 | 372 | 1 | 368 | 4.6e-97 | 364.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35175.t1 | MTR_0010s0370 | 51.075 | 186 | 88 | 2 | 1 | 185 | 4 | 187 | 2.07e-57 | 186 |
| MS.gene35175.t1 | MTR_0010s0350 | 51.075 | 186 | 88 | 2 | 1 | 185 | 4 | 187 | 2.07e-57 | 186 |
| MS.gene35175.t1 | MTR_1g036720 | 44.037 | 109 | 59 | 1 | 1 | 109 | 4 | 110 | 1.68e-25 | 99.8 |
| MS.gene35175.t1 | MTR_3g053920 | 34.118 | 170 | 91 | 4 | 1 | 170 | 8 | 156 | 2.70e-23 | 98.6 |
| MS.gene35175.t1 | MTR_6g033215 | 28.313 | 166 | 118 | 1 | 33 | 197 | 129 | 294 | 2.15e-22 | 96.3 |
| MS.gene35175.t1 | MTR_7g089990 | 44.538 | 119 | 63 | 3 | 101 | 216 | 84 | 202 | 1.09e-21 | 92.8 |
| MS.gene35175.t1 | MTR_2g061500 | 36.000 | 125 | 75 | 2 | 3 | 124 | 5 | 127 | 4.51e-20 | 85.9 |
| MS.gene35175.t1 | MTR_1g036710 | 39.394 | 132 | 44 | 3 | 131 | 261 | 1 | 97 | 4.05e-17 | 81.3 |
| MS.gene35175.t1 | MTR_4g103530 | 40.909 | 88 | 52 | 0 | 57 | 144 | 6 | 93 | 7.60e-17 | 78.6 |
| MS.gene35175.t1 | MTR_7g106180 | 26.027 | 146 | 101 | 2 | 33 | 175 | 26 | 167 | 2.74e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35175.t1 | AT3G31430 | 24.766 | 214 | 154 | 4 | 11 | 223 | 112 | 319 | 3.02e-15 | 76.6 |
Find 92 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCAATCACATACCCTTC+TGG | 0.193758 | 4.4:+19106014 | MS.gene35175:CDS |
| GTGATTGAGAGGAACATATT+TGG | 0.258628 | 4.4:-19106002 | None:intergenic |
| AGAAATGGCAGTGGAAGTTT+TGG | 0.281624 | 4.4:+19106388 | MS.gene35175:CDS |
| CATATAAGAAGCAAGAAAAT+TGG | 0.300710 | 4.4:-19106140 | None:intergenic |
| TAATTTCGTTGGAGAATATA+TGG | 0.306578 | 4.4:+19106096 | MS.gene35175:CDS |
| CTGATGATGGCACGCGCCTT+TGG | 0.308556 | 4.4:+19106338 | MS.gene35175:CDS |
| TGTTTGTCAAATGTCTATTA+AGG | 0.315063 | 4.4:+19105850 | MS.gene35175:CDS |
| ATCCGGAGTTAAAATAGATT+TGG | 0.320429 | 4.4:-19106632 | None:intergenic |
| TTCAGATTTGTATCTACCTT+TGG | 0.331305 | 4.4:-19106736 | None:intergenic |
| GACGGACATCTTCTGGTTCT+AGG | 0.353514 | 4.4:+19105956 | MS.gene35175:CDS |
| CTTGGGGACGCATATCTCTA+TGG | 0.374934 | 4.4:+19106564 | MS.gene35175:CDS |
| TCCACTGCCATTTCTCTTCA+CGG | 0.379198 | 4.4:-19106380 | None:intergenic |
| CATTACTGCAGGTAAACAAT+TGG | 0.385387 | 4.4:+19106072 | MS.gene35175:CDS |
| TGTTATTTCTGTGGTTTGCT+TGG | 0.387501 | 4.4:+19106274 | MS.gene35175:CDS |
| CCACTGCCATTTCTCTTCAC+GGG | 0.388517 | 4.4:-19106379 | None:intergenic |
| TGATTGAGAGGAACATATTT+GGG | 0.396563 | 4.4:-19106001 | None:intergenic |
| CAAACAGGTCTCATGAATTC+CGG | 0.401117 | 4.4:-19105833 | None:intergenic |
| TTAATAGACATTTGACAAAC+AGG | 0.407165 | 4.4:-19105848 | None:intergenic |
| TCCGGTAGCAATTAATAACT+TGG | 0.407198 | 4.4:+19106546 | MS.gene35175:CDS |
| GAAGATTCCTATGTTCTAGT+TGG | 0.412757 | 4.4:+19105758 | MS.gene35175:CDS |
| ACAGTCTGACATGATCAATA+TGG | 0.418022 | 4.4:+19106762 | MS.gene35175:CDS |
| TAAACAACATTCAGATGTTC+CGG | 0.418804 | 4.4:+19106528 | MS.gene35175:CDS |
| TCTCAATCACATACCCTTCT+GGG | 0.419105 | 4.4:+19106015 | MS.gene35175:CDS |
| CAATTGTTTACCTGCAGTAA+TGG | 0.424201 | 4.4:-19106071 | None:intergenic |
| GAGAGGATGGTGGTCCGGTT+AGG | 0.424336 | 4.4:+19106425 | MS.gene35175:CDS |
| AAGATTCCTATGTTCTAGTT+GGG | 0.426792 | 4.4:+19105759 | MS.gene35175:CDS |
| AATTCAGTCTTGTTTACATC+CGG | 0.433001 | 4.4:-19106649 | None:intergenic |
| AAACAATTGGGTAATTTCGT+TGG | 0.439460 | 4.4:+19106085 | MS.gene35175:CDS |
| CTAGAACATAGGAATCTTCA+AGG | 0.443251 | 4.4:-19105754 | None:intergenic |
| TGTAAACAAGACTGAATTGA+TGG | 0.444069 | 4.4:+19106654 | MS.gene35175:CDS |
| TAGATTTGGTTGGCAAGGGA+TGG | 0.463335 | 4.4:-19106618 | None:intergenic |
| GAAAGAATTGAAAGAGGTAC+AGG | 0.476260 | 4.4:-19105886 | None:intergenic |
| TAAAATAGATTTGGTTGGCA+AGG | 0.480153 | 4.4:-19106623 | None:intergenic |
| CAAACCACAGAAATAACAAA+AGG | 0.482509 | 4.4:-19106269 | None:intergenic |
| AGAACGACAACTGTTATTGA+TGG | 0.482836 | 4.4:+19106499 | MS.gene35175:CDS |
| CACTGCCATTTCTCTTCACG+GGG | 0.483691 | 4.4:-19106378 | None:intergenic |
| TTCATCCTCTTCACCTGCGA+TGG | 0.489877 | 4.4:-19105690 | None:intergenic |
| CCGGTAGCAATTAATAACTT+GGG | 0.491044 | 4.4:+19106547 | MS.gene35175:CDS |
| ATTACTGCAGGTAAACAATT+GGG | 0.492640 | 4.4:+19106073 | MS.gene35175:CDS |
| AAAATAGATTTGGTTGGCAA+GGG | 0.494617 | 4.4:-19106622 | None:intergenic |
| GATGGTGCAACAGACCTAAC+CGG | 0.506790 | 4.4:-19106439 | None:intergenic |
| AAAACGCCCAACTAGAACAT+AGG | 0.508599 | 4.4:-19105765 | None:intergenic |
| CCCAAGTTATTAATTGCTAC+CGG | 0.508620 | 4.4:-19106547 | None:intergenic |
| TATGCGTATCCGTGTTATGC+TGG | 0.511346 | 4.4:+19106159 | MS.gene35175:CDS |
| ATTCTTTCACCCTCGTGACA+TGG | 0.518090 | 4.4:+19105901 | MS.gene35175:CDS |
| ACATGTCCTTCTTTATGTGA+TGG | 0.518989 | 4.4:-19106457 | None:intergenic |
| ATGGAGCACCTTTCCATCGC+AGG | 0.523638 | 4.4:+19105677 | MS.gene35175:CDS |
| CCTCTTCACCTGCGATGGAA+AGG | 0.523708 | 4.4:-19105685 | None:intergenic |
| TATGCTAATGCTACTGATGA+TGG | 0.526550 | 4.4:+19106325 | MS.gene35175:CDS |
| GGAGTTAAAATAGATTTGGT+TGG | 0.529948 | 4.4:-19106628 | None:intergenic |
| GTTTCAAATATGAGAGACTC+GGG | 0.540034 | 4.4:+19106245 | MS.gene35175:CDS |
| CCTTTCCATCGCAGGTGAAG+AGG | 0.544703 | 4.4:+19105685 | MS.gene35175:CDS |
| AAGGGATGGAATAAAGTAGC+AGG | 0.551431 | 4.4:-19106604 | None:intergenic |
| GCTGGATGTTCGAAAACCAC+TGG | 0.553986 | 4.4:+19106177 | MS.gene35175:CDS |
| TGTTTCAAATATGAGAGACT+CGG | 0.562317 | 4.4:+19106244 | MS.gene35175:CDS |
| TCATCGCATAGAATCGAATA+CGG | 0.566745 | 4.4:-19105799 | None:intergenic |
| GGTTGTATGTCCATTACTGC+AGG | 0.572619 | 4.4:+19106061 | MS.gene35175:CDS |
| GACGCATATCTCTATGGCTG+AGG | 0.573205 | 4.4:+19106570 | MS.gene35175:CDS |
| ATCATGGACTTGCACCCAGA+AGG | 0.573647 | 4.4:-19106029 | None:intergenic |
| GCTACGAGAGGATGGTGGTC+CGG | 0.574230 | 4.4:+19106420 | MS.gene35175:CDS |
| TACAACCGATCGGAACATCA+TGG | 0.574544 | 4.4:-19106045 | None:intergenic |
| TCATGGACTTGCACCCAGAA+GGG | 0.578778 | 4.4:-19106028 | None:intergenic |
| TGCGATGAAGGAGAAGATGC+CGG | 0.582608 | 4.4:+19105814 | MS.gene35175:CDS |
| TATTCGATTCTATGCGATGA+AGG | 0.583127 | 4.4:+19105802 | MS.gene35175:CDS |
| GTCGTTCTCTGAGATAAGCC+AGG | 0.583877 | 4.4:-19106484 | None:intergenic |
| TCAAAGCGGCTACGAGAGGA+TGG | 0.584521 | 4.4:+19106412 | MS.gene35175:CDS |
| TTGTCAAATGTCTATTAAGG+AGG | 0.588359 | 4.4:+19105853 | MS.gene35175:CDS |
| CACGTAGCTCAGAACTCCAA+AGG | 0.590717 | 4.4:-19106354 | None:intergenic |
| CGGTAGCAATTAATAACTTG+GGG | 0.591656 | 4.4:+19106548 | MS.gene35175:CDS |
| ATGGAGCGAGTACTCAAGAA+AGG | 0.593577 | 4.4:+19105920 | MS.gene35175:CDS |
| TGATTCTGAAACTGCACCAA+AGG | 0.596380 | 4.4:+19106720 | MS.gene35175:CDS |
| CAGAAGGGTATGTGATTGAG+AGG | 0.599442 | 4.4:-19106013 | None:intergenic |
| GTTGCACCATCACATAAAGA+AGG | 0.606710 | 4.4:+19106451 | MS.gene35175:CDS |
| CAAGTCCATGATGTTCCGAT+CGG | 0.609422 | 4.4:+19106040 | MS.gene35175:CDS |
| CCCGTGAAGAGAAATGGCAG+TGG | 0.610444 | 4.4:+19106379 | MS.gene35175:CDS |
| AGTACTCGCTCCATGTCACG+AGG | 0.611590 | 4.4:-19105911 | None:intergenic |
| TGGATCAAAGCGGCTACGAG+AGG | 0.620800 | 4.4:+19106408 | MS.gene35175:CDS |
| TTCGAACATCCAGCATAACA+CGG | 0.626483 | 4.4:-19106168 | None:intergenic |
| AAAGAAGGACATGTAATACC+TGG | 0.626658 | 4.4:+19106466 | MS.gene35175:CDS |
| TAGAACATAGGAATCTTCAA+GGG | 0.629536 | 4.4:-19105753 | None:intergenic |
| ATAGAATCGAATACGGCGGT+CGG | 0.636862 | 4.4:-19105792 | None:intergenic |
| ACGACAACTGTTATTGATGG+AGG | 0.641144 | 4.4:+19106502 | MS.gene35175:CDS |
| GAGGGTGAAAGAATTGAAAG+AGG | 0.647239 | 4.4:-19105892 | None:intergenic |
| TATGGAAGATGTGCAGCGTG+AGG | 0.660462 | 4.4:+19106780 | MS.gene35175:CDS |
| GTAATGGACATACAACCGAT+CGG | 0.680385 | 4.4:-19106055 | None:intergenic |
| GGAATCTTCAAGGGACTCAG+CGG | 0.693438 | 4.4:-19105744 | None:intergenic |
| GAGTACTCAAGAAAGGTCTG+TGG | 0.697972 | 4.4:+19105927 | MS.gene35175:CDS |
| AAGCGGCTACGAGAGGATGG+TGG | 0.701339 | 4.4:+19106415 | MS.gene35175:CDS |
| TGCTGCAGAATTCATCTGTG+TGG | 0.719271 | 4.4:-19106297 | None:intergenic |
| ACTGCCATTTCTCTTCACGG+GGG | 0.754655 | 4.4:-19106377 | None:intergenic |
| TCGCATAGAATCGAATACGG+CGG | 0.757451 | 4.4:-19105796 | None:intergenic |
| GTACTCGCTCCATGTCACGA+GGG | 0.761679 | 4.4:-19105910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATAAGGAAAAAAATATC+CGG | - | chr4.4:19106963-19106982 | None:intergenic | 20.0% |
| !! | TTGATGGAAGAAAAATTAAA+TGG | + | chr4.4:19106670-19106689 | MS.gene35175:CDS | 20.0% |
| !!! | GAATCAACAACATTTTTTAT+CGG | + | chr4.4:19106822-19106841 | MS.gene35175:intron | 20.0% |
| ! | AAAAAGATTAAGACTAAGAC+TGG | + | chr4.4:19106208-19106227 | MS.gene35175:CDS | 25.0% |
| ! | AACTTGCAGATTAATGAAAT+TGG | - | chr4.4:19107132-19107151 | None:intergenic | 25.0% |
| ! | CATATAAGAAGCAAGAAAAT+TGG | - | chr4.4:19106143-19106162 | None:intergenic | 25.0% |
| ! | TAATTTCGTTGGAGAATATA+TGG | + | chr4.4:19106096-19106115 | MS.gene35175:CDS | 25.0% |
| ! | TGTTTGTCAAATGTCTATTA+AGG | + | chr4.4:19105850-19105869 | MS.gene35175:CDS | 25.0% |
| ! | TTAATAGACATTTGACAAAC+AGG | - | chr4.4:19105851-19105870 | None:intergenic | 25.0% |
| !!! | AACCAAATCTATTTTAACTC+CGG | + | chr4.4:19106630-19106649 | MS.gene35175:CDS | 25.0% |
| AAACAATTGGGTAATTTCGT+TGG | + | chr4.4:19106085-19106104 | MS.gene35175:CDS | 30.0% | |
| AAACCATTATAAAGCCAAGT+CGG | - | chr4.4:19107338-19107357 | None:intergenic | 30.0% | |
| AAATATCCGGTTTATAGACA+CGG | - | chr4.4:19106950-19106969 | None:intergenic | 30.0% | |
| AAATCACCTATAATACACCA+AGG | - | chr4.4:19107269-19107288 | None:intergenic | 30.0% | |
| AATCACCTATAATACACCAA+GGG | - | chr4.4:19107268-19107287 | None:intergenic | 30.0% | |
| ACGAAATGAGTATCTTATGT+TGG | + | chr4.4:19106871-19106890 | MS.gene35175:intron | 30.0% | |
| AGTGAGACAAAGTTTCAATA+AGG | - | chr4.4:19106977-19106996 | None:intergenic | 30.0% | |
| ATCCGGAGTTAAAATAGATT+TGG | - | chr4.4:19106635-19106654 | None:intergenic | 30.0% | |
| ATTACTGCAGGTAAACAATT+GGG | + | chr4.4:19106073-19106092 | MS.gene35175:CDS | 30.0% | |
| CAAACCACAGAAATAACAAA+AGG | - | chr4.4:19106272-19106291 | None:intergenic | 30.0% | |
| TAAACAACATTCAGATGTTC+CGG | + | chr4.4:19106528-19106547 | MS.gene35175:CDS | 30.0% | |
| TAGAACATAGGAATCTTCAA+GGG | - | chr4.4:19105756-19105775 | None:intergenic | 30.0% | |
| TGATTGAGAGGAACATATTT+GGG | - | chr4.4:19106004-19106023 | None:intergenic | 30.0% | |
| TGTAAACAAGACTGAATTGA+TGG | + | chr4.4:19106654-19106673 | MS.gene35175:CDS | 30.0% | |
| TGTTTCAAATATGAGAGACT+CGG | + | chr4.4:19106244-19106263 | MS.gene35175:CDS | 30.0% | |
| TTCAGATTTGTATCTACCTT+TGG | - | chr4.4:19106739-19106758 | None:intergenic | 30.0% | |
| TTGTCAAATGTCTATTAAGG+AGG | + | chr4.4:19105853-19105872 | MS.gene35175:CDS | 30.0% | |
| ! | AAAATAGATTTGGTTGGCAA+GGG | - | chr4.4:19106625-19106644 | None:intergenic | 30.0% |
| ! | AAGATTCCTATGTTCTAGTT+GGG | + | chr4.4:19105759-19105778 | MS.gene35175:CDS | 30.0% |
| ! | ATCTTTTTAAATCGAACCAG+TGG | - | chr4.4:19106196-19106215 | None:intergenic | 30.0% |
| ! | GGAGTTAAAATAGATTTGGT+TGG | - | chr4.4:19106631-19106650 | None:intergenic | 30.0% |
| ! | TAAAATAGATTTGGTTGGCA+AGG | - | chr4.4:19106626-19106645 | None:intergenic | 30.0% |
| ! | TACTTTACTGTTGATAGAGA+AGG | + | chr4.4:19107041-19107060 | MS.gene35175:intron | 30.0% |
| !! | AATTCAGTCTTGTTTACATC+CGG | - | chr4.4:19106652-19106671 | None:intergenic | 30.0% |
| !! | AGAGATGTTTGTTATTTGCT+TGG | + | chr4.4:19107008-19107027 | MS.gene35175:intron | 30.0% |
| AAAGAAGGACATGTAATACC+TGG | + | chr4.4:19106466-19106485 | MS.gene35175:CDS | 35.0% | |
| ACAGTCTGACATGATCAATA+TGG | + | chr4.4:19106762-19106781 | MS.gene35175:CDS | 35.0% | |
| ACATGTCCTTCTTTATGTGA+TGG | - | chr4.4:19106460-19106479 | None:intergenic | 35.0% | |
| AGAACGACAACTGTTATTGA+TGG | + | chr4.4:19106499-19106518 | MS.gene35175:CDS | 35.0% | |
| AGGTAAATGGATATCCTTCT+AGG | - | chr4.4:19107400-19107419 | None:intergenic | 35.0% | |
| CAATTGTTTACCTGCAGTAA+TGG | - | chr4.4:19106074-19106093 | None:intergenic | 35.0% | |
| CATAAGATACTCATTTCGTC+CGG | - | chr4.4:19106870-19106889 | None:intergenic | 35.0% | |
| CATTACTGCAGGTAAACAAT+TGG | + | chr4.4:19106072-19106091 | MS.gene35175:CDS | 35.0% | |
| CCCAAGTTATTAATTGCTAC+CGG | - | chr4.4:19106550-19106569 | None:intergenic | 35.0% | |
| CCGGTAGCAATTAATAACTT+GGG | + | chr4.4:19106547-19106566 | MS.gene35175:CDS | 35.0% | |
| CGGTAGCAATTAATAACTTG+GGG | + | chr4.4:19106548-19106567 | MS.gene35175:CDS | 35.0% | |
| CTAGAACATAGGAATCTTCA+AGG | - | chr4.4:19105757-19105776 | None:intergenic | 35.0% | |
| GAAGATTCCTATGTTCTAGT+TGG | + | chr4.4:19105758-19105777 | MS.gene35175:CDS | 35.0% | |
| GGTAAATGGATATCCTTCTA+GGG | - | chr4.4:19107399-19107418 | None:intergenic | 35.0% | |
| GTAAATGGATATCCTTCTAG+GGG | - | chr4.4:19107398-19107417 | None:intergenic | 35.0% | |
| GTGATTGAGAGGAACATATT+TGG | - | chr4.4:19106005-19106024 | None:intergenic | 35.0% | |
| GTTTCAAATATGAGAGACTC+GGG | + | chr4.4:19106245-19106264 | MS.gene35175:CDS | 35.0% | |
| TAAATGGATATCCTTCTAGG+GGG | - | chr4.4:19107397-19107416 | None:intergenic | 35.0% | |
| TAGAAGGATATCCATTTACC+TGG | + | chr4.4:19107399-19107418 | MS.gene35175:intron | 35.0% | |
| TATGCTAATGCTACTGATGA+TGG | + | chr4.4:19106325-19106344 | MS.gene35175:CDS | 35.0% | |
| TATTCGATTCTATGCGATGA+AGG | + | chr4.4:19105802-19105821 | MS.gene35175:CDS | 35.0% | |
| TCATCGCATAGAATCGAATA+CGG | - | chr4.4:19105802-19105821 | None:intergenic | 35.0% | |
| TCCGGTAGCAATTAATAACT+TGG | + | chr4.4:19106546-19106565 | MS.gene35175:CDS | 35.0% | |
| TTACAAGTGATGACAAACGA+GGG | + | chr4.4:19107300-19107319 | MS.gene35175:intron | 35.0% | |
| TTTACCTGGTTCAAAAGTCT+TGG | + | chr4.4:19107413-19107432 | MS.gene35175:intron | 35.0% | |
| ! | AGACTTTTGAACCAGGTAAA+TGG | - | chr4.4:19107413-19107432 | None:intergenic | 35.0% |
| ! | ATGGCGACTAACTTCATTTT+GGG | + | chr4.4:19107172-19107191 | MS.gene35175:intron | 35.0% |
| ! | GAAAGAATTGAAAGAGGTAC+AGG | - | chr4.4:19105889-19105908 | None:intergenic | 35.0% |
| ! | TATGGCGACTAACTTCATTT+TGG | + | chr4.4:19107171-19107190 | MS.gene35175:intron | 35.0% |
| !! | TGTTATTTCTGTGGTTTGCT+TGG | + | chr4.4:19106274-19106293 | MS.gene35175:CDS | 35.0% |
| !!! | CATTTTTTATCGGTAGAGTC+TGG | + | chr4.4:19106832-19106851 | MS.gene35175:intron | 35.0% |
| AAAACGCCCAACTAGAACAT+AGG | - | chr4.4:19105768-19105787 | None:intergenic | 40.0% | |
| AAGGGATGGAATAAAGTAGC+AGG | - | chr4.4:19106607-19106626 | None:intergenic | 40.0% | |
| ACGACAACTGTTATTGATGG+AGG | + | chr4.4:19106502-19106521 | MS.gene35175:CDS | 40.0% | |
| CAAACAGGTCTCATGAATTC+CGG | - | chr4.4:19105836-19105855 | None:intergenic | 40.0% | |
| CAAGTTAATGACTCAGACAG+AGG | + | chr4.4:19107146-19107165 | MS.gene35175:intron | 40.0% | |
| CCTTATCCGTGTCTATAAAC+CGG | + | chr4.4:19106941-19106960 | MS.gene35175:intron | 40.0% | |
| CTTACAAGTGATGACAAACG+AGG | + | chr4.4:19107299-19107318 | MS.gene35175:intron | 40.0% | |
| GAGGGTGAAAGAATTGAAAG+AGG | - | chr4.4:19105895-19105914 | None:intergenic | 40.0% | |
| GTTGCACCATCACATAAAGA+AGG | + | chr4.4:19106451-19106470 | MS.gene35175:CDS | 40.0% | |
| TACAAGTGATGACAAACGAG+GGG | + | chr4.4:19107301-19107320 | MS.gene35175:intron | 40.0% | |
| TCTCAATCACATACCCTTCT+GGG | + | chr4.4:19106015-19106034 | MS.gene35175:CDS | 40.0% | |
| TTCGAACATCCAGCATAACA+CGG | - | chr4.4:19106171-19106190 | None:intergenic | 40.0% | |
| TTTAGACTAGGAACTGCCTT+AGG | - | chr4.4:19106918-19106937 | None:intergenic | 40.0% | |
| ! | AAAGGTCTGTGGTCTTTTGA+CGG | + | chr4.4:19105938-19105957 | MS.gene35175:CDS | 40.0% |
| ! | AGAAATGGCAGTGGAAGTTT+TGG | + | chr4.4:19106388-19106407 | MS.gene35175:CDS | 40.0% |
| ! | AGTTCCAAGACTTTTGAACC+AGG | - | chr4.4:19107420-19107439 | None:intergenic | 40.0% |
| ! | ATGACTCAGACAGAGGTATA+TGG | + | chr4.4:19107153-19107172 | MS.gene35175:intron | 40.0% |
| ! | CGGATAAGGTCTTTTAGACT+AGG | - | chr4.4:19106930-19106949 | None:intergenic | 40.0% |
| ! | TGGCGACTAACTTCATTTTG+GGG | + | chr4.4:19107173-19107192 | MS.gene35175:intron | 40.0% |
| !! | AGACCGACTTGGCTTTATAA+TGG | + | chr4.4:19107332-19107351 | MS.gene35175:intron | 40.0% |
| !! | GTAATGGACATACAACCGAT+CGG | - | chr4.4:19106058-19106077 | None:intergenic | 40.0% |
| !! | GTGTTGTAAAAAAGCGCTCA+AGG | + | chr4.4:19106692-19106711 | MS.gene35175:CDS | 40.0% |
| !! | TGATTCTGAAACTGCACCAA+AGG | + | chr4.4:19106720-19106739 | MS.gene35175:CDS | 40.0% |
| !!! | GGGTCCTTTTGTTATTTCTG+TGG | + | chr4.4:19106265-19106284 | MS.gene35175:CDS | 40.0% |
| !!! | GTGGAAGTTTTGGATCAAAG+CGG | + | chr4.4:19106398-19106417 | MS.gene35175:CDS | 40.0% |
| ACAAGTGATGACAAACGAGG+GGG | + | chr4.4:19107302-19107321 | MS.gene35175:intron | 45.0% | |
| ATAGAATCGAATACGGCGGT+CGG | - | chr4.4:19105795-19105814 | None:intergenic | 45.0% | |
| ATCTTATGTTGGAACTGCCG+AGG | + | chr4.4:19106882-19106901 | MS.gene35175:intron | 45.0% | |
| ATGCACAACGTCGACAATCT+TGG | + | chr4.4:19107207-19107226 | MS.gene35175:intron | 45.0% | |
| ATGGAGCGAGTACTCAAGAA+AGG | + | chr4.4:19105920-19105939 | MS.gene35175:CDS | 45.0% | |
| ATTCTTTCACCCTCGTGACA+TGG | + | chr4.4:19105901-19105920 | MS.gene35175:CDS | 45.0% | |
| CAAGTCCATGATGTTCCGAT+CGG | + | chr4.4:19106040-19106059 | MS.gene35175:CDS | 45.0% | |
| CCGGTTTATAGACACGGATA+AGG | - | chr4.4:19106944-19106963 | None:intergenic | 45.0% | |
| CTCTCAATCACATACCCTTC+TGG | + | chr4.4:19106014-19106033 | MS.gene35175:CDS | 45.0% | |
| GAGTACTCAAGAAAGGTCTG+TGG | + | chr4.4:19105927-19105946 | MS.gene35175:CDS | 45.0% | |
| GGTTGTATGTCCATTACTGC+AGG | + | chr4.4:19106061-19106080 | MS.gene35175:CDS | 45.0% | |
| GTGGTGGTCTAGCTGTTATT+TGG | + | chr4.4:19107069-19107088 | MS.gene35175:intron | 45.0% | |
| TACAACCGATCGGAACATCA+TGG | - | chr4.4:19106048-19106067 | None:intergenic | 45.0% | |
| TATAATACACCAAGGGTCCG+TGG | - | chr4.4:19107261-19107280 | None:intergenic | 45.0% | |
| TATGCGTATCCGTGTTATGC+TGG | + | chr4.4:19106159-19106178 | MS.gene35175:CDS | 45.0% | |
| TCGCATAGAATCGAATACGG+CGG | - | chr4.4:19105799-19105818 | None:intergenic | 45.0% | |
| TGCTGCAGAATTCATCTGTG+TGG | - | chr4.4:19106300-19106319 | None:intergenic | 45.0% | |
| ! | ACGGACCCTTGGTGTATTAT+AGG | + | chr4.4:19107260-19107279 | MS.gene35175:intron | 45.0% |
| ! | CAGAAGGGTATGTGATTGAG+AGG | - | chr4.4:19106016-19106035 | None:intergenic | 45.0% |
| ! | GTTGATAGAGAAGGTCGTAG+TGG | + | chr4.4:19107050-19107069 | MS.gene35175:intron | 45.0% |
| ! | TAGATTTGGTTGGCAAGGGA+TGG | - | chr4.4:19106621-19106640 | None:intergenic | 45.0% |
| ! | TCCACTGCCATTTCTCTTCA+CGG | - | chr4.4:19106383-19106402 | None:intergenic | 45.0% |
| !! | GTCTTTTGACGGACATCTTC+TGG | + | chr4.4:19105949-19105968 | MS.gene35175:CDS | 45.0% |
| !! | AATAATTTATAATATTACAT+TGG | - | chr4.4:19107106-19107125 | None:intergenic | 5.0% |
| ACATAGCAGCAAGGTCACGA+AGG | - | chr4.4:19107238-19107257 | None:intergenic | 50.0% | |
| AGATACTCATTTCGTCCGGC+AGG | - | chr4.4:19106866-19106885 | None:intergenic | 50.0% | |
| ATCATGGACTTGCACCCAGA+AGG | - | chr4.4:19106032-19106051 | None:intergenic | 50.0% | |
| ATCGGTAGAGTCTGGTTACC+AGG | + | chr4.4:19106840-19106859 | MS.gene35175:intron | 50.0% | |
| CAAGTGATGACAAACGAGGG+GGG | + | chr4.4:19107303-19107322 | MS.gene35175:intron | 50.0% | |
| CACGTAGCTCAGAACTCCAA+AGG | - | chr4.4:19106357-19106376 | None:intergenic | 50.0% | |
| CGGGAAAAGAGTAAGCCATG+AGG | - | chr4.4:19107486-19107505 | None:intergenic | 50.0% | |
| CTTGGGGACGCATATCTCTA+TGG | + | chr4.4:19106564-19106583 | MS.gene35175:CDS | 50.0% | |
| GACGCATATCTCTATGGCTG+AGG | + | chr4.4:19106570-19106589 | MS.gene35175:CDS | 50.0% | |
| GAGCGTTCTACACATCCTCA+TGG | + | chr4.4:19107468-19107487 | MS.gene35175:intron | 50.0% | |
| GATAGAGAAGGTCGTAGTGG+TGG | + | chr4.4:19107053-19107072 | MS.gene35175:intron | 50.0% | |
| GATGGTGCAACAGACCTAAC+CGG | - | chr4.4:19106442-19106461 | None:intergenic | 50.0% | |
| GCTGGATGTTCGAAAACCAC+TGG | + | chr4.4:19106177-19106196 | MS.gene35175:CDS | 50.0% | |
| GGAATCTTCAAGGGACTCAG+CGG | - | chr4.4:19105747-19105766 | None:intergenic | 50.0% | |
| TATGGAAGATGTGCAGCGTG+AGG | + | chr4.4:19106780-19106799 | MS.gene35175:CDS | 50.0% | |
| TCATGGACTTGCACCCAGAA+GGG | - | chr4.4:19106031-19106050 | None:intergenic | 50.0% | |
| TGACCTTGCTGCTATGTCCA+CGG | + | chr4.4:19107241-19107260 | MS.gene35175:intron | 50.0% | |
| TGCGATGAAGGAGAAGATGC+CGG | + | chr4.4:19105814-19105833 | MS.gene35175:CDS | 50.0% | |
| TTCATCCTCTTCACCTGCGA+TGG | - | chr4.4:19105693-19105712 | None:intergenic | 50.0% | |
| ! | ACTGCCATTTCTCTTCACGG+GGG | - | chr4.4:19106380-19106399 | None:intergenic | 50.0% |
| ! | ATGGATATCCTTCTAGGGGG+AGG | - | chr4.4:19107394-19107413 | None:intergenic | 50.0% |
| ! | CACTGCCATTTCTCTTCACG+GGG | - | chr4.4:19106381-19106400 | None:intergenic | 50.0% |
| ! | CCACTGCCATTTCTCTTCAC+GGG | - | chr4.4:19106382-19106401 | None:intergenic | 50.0% |
| !! | GACGGACATCTTCTGGTTCT+AGG | + | chr4.4:19105956-19105975 | MS.gene35175:CDS | 50.0% |
| !! | GTCGTTCTCTGAGATAAGCC+AGG | - | chr4.4:19106487-19106506 | None:intergenic | 50.0% |
| !!! | GTTCTAGGACTTTTGCAGCG+AGG | + | chr4.4:19105971-19105990 | MS.gene35175:CDS | 50.0% |
| AAGTCTTGGAACTCCTCGCG+CGG | + | chr4.4:19107427-19107446 | MS.gene35175:intron | 55.0% | |
| AGTACTCGCTCCATGTCACG+AGG | - | chr4.4:19105914-19105933 | None:intergenic | 55.0% | |
| AGTCTTTCTTCTACCGCGCG+AGG | - | chr4.4:19107443-19107462 | None:intergenic | 55.0% | |
| ATGTTGGAACTGCCGAGGTC+TGG | + | chr4.4:19106887-19106906 | MS.gene35175:intron | 55.0% | |
| CCCGTGAAGAGAAATGGCAG+TGG | + | chr4.4:19106379-19106398 | MS.gene35175:CDS | 55.0% | |
| CCTCTTCACCTGCGATGGAA+AGG | - | chr4.4:19105688-19105707 | None:intergenic | 55.0% | |
| CCTTAGGATGTCCCAGACCT+CGG | - | chr4.4:19106902-19106921 | None:intergenic | 55.0% | |
| CCTTTCCATCGCAGGTGAAG+AGG | + | chr4.4:19105685-19105704 | MS.gene35175:CDS | 55.0% | |
| GTACTCGCTCCATGTCACGA+GGG | - | chr4.4:19105913-19105932 | None:intergenic | 55.0% | |
| TCAAAGCGGCTACGAGAGGA+TGG | + | chr4.4:19106412-19106431 | MS.gene35175:CDS | 55.0% | |
| TGGATCAAAGCGGCTACGAG+AGG | + | chr4.4:19106408-19106427 | MS.gene35175:CDS | 55.0% | |
| TGTTGGAACTGCCGAGGTCT+GGG | + | chr4.4:19106888-19106907 | MS.gene35175:intron | 55.0% | |
| ! | ATGGAGCACCTTTCCATCGC+AGG | + | chr4.4:19105677-19105696 | MS.gene35175:CDS | 55.0% |
| AAGCGGCTACGAGAGGATGG+TGG | + | chr4.4:19106415-19106434 | MS.gene35175:CDS | 60.0% | |
| AGTCTGGTTACCAGGCCTGC+CGG | + | chr4.4:19106848-19106867 | MS.gene35175:intron | 60.0% | |
| CGTGCCCCCGTGAAGAGAAA+TGG | + | chr4.4:19106373-19106392 | MS.gene35175:CDS | 60.0% | |
| CTGCTATGTCCACGGACCCT+TGG | + | chr4.4:19107249-19107268 | MS.gene35175:intron | 60.0% | |
| GGTCCGTGGACATAGCAGCA+AGG | - | chr4.4:19107247-19107266 | None:intergenic | 60.0% | |
| TTGCACGACCTCCCCCTAGA+AGG | + | chr4.4:19107383-19107402 | MS.gene35175:intron | 60.0% | |
| ! | CCGAGGTCTGGGACATCCTA+AGG | + | chr4.4:19106899-19106918 | MS.gene35175:intron | 60.0% |
| ! | GAGAGGATGGTGGTCCGGTT+AGG | + | chr4.4:19106425-19106444 | MS.gene35175:CDS | 60.0% |
| ! | GCTACGAGAGGATGGTGGTC+CGG | + | chr4.4:19106420-19106439 | MS.gene35175:CDS | 60.0% |
| !! | CTGATGATGGCACGCGCCTT+TGG | + | chr4.4:19106338-19106357 | MS.gene35175:CDS | 60.0% |
| CTCATTTCGTCCGGCAGGCC+TGG | - | chr4.4:19106861-19106880 | None:intergenic | 65.0% | |
| GGGGGTCTGAGAGACCGACT+TGG | + | chr4.4:19107321-19107340 | MS.gene35175:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19105677 | 19107522 | 19105677 | ID=MS.gene35175 |
| chr4.4 | mRNA | 19105677 | 19107522 | 19105677 | ID=MS.gene35175.t1;Parent=MS.gene35175 |
| chr4.4 | exon | 19105677 | 19106801 | 19105677 | ID=MS.gene35175.t1.exon1;Parent=MS.gene35175.t1 |
| chr4.4 | CDS | 19105677 | 19106801 | 19105677 | ID=cds.MS.gene35175.t1;Parent=MS.gene35175.t1 |
| chr4.4 | exon | 19107514 | 19107522 | 19107514 | ID=MS.gene35175.t1.exon2;Parent=MS.gene35175.t1 |
| chr4.4 | CDS | 19107514 | 19107522 | 19107514 | ID=cds.MS.gene35175.t1;Parent=MS.gene35175.t1 |
| Gene Sequence |
| Protein sequence |
