AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053373

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053373.t1 MTR_6g053230 43.831 543 216 6 99 638 22 478 1.84e-121 370
MS.gene053373.t1 MTR_6g033215 37.824 193 119 1 103 295 103 294 9.80e-45 161
MS.gene053373.t1 MTR_3g024240 61.157 121 43 2 178 295 55 174 1.85e-44 157
MS.gene053373.t1 MTR_0010s0370 37.162 148 93 0 126 273 30 177 3.97e-28 112
MS.gene053373.t1 MTR_0010s0350 37.162 148 93 0 126 273 30 177 3.97e-28 112
MS.gene053373.t1 MTR_3g053920 34.286 140 82 1 94 233 10 139 1.60e-23 101
MS.gene053373.t1 MTR_4g020545 29.048 210 97 3 159 368 81 238 3.89e-21 94.7
MS.gene053373.t1 MTR_2g061500 33.333 132 78 1 94 225 10 131 1.88e-20 88.2
MS.gene053373.t1 MTR_8g468010 51.667 60 29 0 215 274 5 64 5.96e-17 78.6
MS.gene053373.t1 MTR_4g103530 38.202 89 55 0 153 241 5 93 6.08e-16 77.0
MS.gene053373.t1 MTR_6g053790 29.121 182 101 5 232 410 35 191 2.09e-14 75.1
MS.gene053373.t1 MTR_1g036720 41.429 70 41 0 128 197 32 101 1.62e-12 64.7
MS.gene053373.t1 MTR_1g032270 35.135 74 48 0 194 267 1 74 1.49e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053373.t1 AT3G57587 24.312 218 145 6 120 325 23 232 1.36e-13 73.2
MS.gene053373.t1 AT2G02103 25.161 155 114 1 171 325 80 232 3.43e-12 69.3
MS.gene053373.t1 AT5G25200 24.684 158 113 3 170 325 79 232 3.85e-12 68.9
MS.gene053373.t1 AT2G41590 26.752 157 109 3 171 325 80 232 4.90e-12 68.6
MS.gene053373.t1 AT2G17920 23.383 201 152 1 128 328 37 235 8.48e-12 67.0
MS.gene053373.t1 AT3G31430 30.120 166 106 6 149 311 153 311 1.88e-11 66.2

Find 179 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTGTTGCTCCTAGTATT+TGG 0.192181 1.4:-26948579 None:intergenic
TTTGCTCCTTACATTGATTC+TGG 0.242475 1.4:-26946959 None:intergenic
GATTGCACCCATTCAGCATT+TGG 0.251219 1.4:-26948713 None:intergenic
ATCAATTTGGCGACCTGGTC+AGG 0.261092 1.4:+26947690 MS.gene053373:CDS
ATTCATGATAGAACTGAAAA+TGG 0.268232 1.4:-26947747 None:intergenic
CCCTTACCTTTGTCATTACT+TGG 0.284571 1.4:-26948933 None:intergenic
TTGCTACATCTGTGGCATAA+TGG 0.300136 1.4:+26948131 MS.gene053373:CDS
AAGATAAAACTCTGCCTATA+AGG 0.300565 1.4:+26948838 MS.gene053373:CDS
ATGTAAGGAGCAAATGTTAA+TGG 0.303085 1.4:+26946968 MS.gene053373:CDS
GAGTTCTACAAAACGGTCTT+TGG 0.303204 1.4:+26947782 MS.gene053373:CDS
TATTGTTGCTCCTAGTATTT+GGG 0.305260 1.4:-26948578 None:intergenic
CCCTGCACCATAGGCCTTAT+AGG 0.317894 1.4:-26948852 None:intergenic
GCCTATCTGCTTCCAGTTCA+TGG 0.318880 1.4:+26947654 MS.gene053373:CDS
AGGAAAGATTACCATCAATT+TGG 0.319616 1.4:+26947677 MS.gene053373:CDS
TGCTACATCTGTGGCATAAT+GGG 0.319954 1.4:+26948132 MS.gene053373:CDS
TCATTACTTGGCAGTTCCTT+TGG 0.323988 1.4:-26948921 None:intergenic
ATCCTCCTCCGCGCAAAATT+CGG 0.326845 1.4:-26948419 None:intergenic
GCCTATAAGGCCTATGGTGC+AGG 0.327650 1.4:+26948851 MS.gene053373:CDS
ATTGCACCCATTCAGCATTT+GGG 0.340148 1.4:-26948712 None:intergenic
GGATCTTTAGCTTTCATGAT+TGG 0.343526 1.4:+26946877 MS.gene053373:CDS
TCACAATAATGTTGTTGTTA+TGG 0.347806 1.4:+26948362 MS.gene053373:CDS
TGTAAGGAGCAAATGTTAAT+GGG 0.351344 1.4:+26946969 MS.gene053373:CDS
GTCCTTCACCTCCTCCATTA+TGG 0.352594 1.4:-26948476 None:intergenic
CACACCAGCACCTTCATTCC+CGG 0.353640 1.4:-26949078 None:intergenic
TCACCAAATGGATCCTCAAC+TGG 0.358593 1.4:+26947565 MS.gene053373:CDS
ACTAATATCATTGGCCATAA+TGG 0.359443 1.4:+26948462 MS.gene053373:CDS
TGACAAAGGTAAGGGGAAAA+TGG 0.367901 1.4:+26948941 MS.gene053373:CDS
TCCCAACCTTTCGTATTTGA+AGG 0.371814 1.4:-26948103 None:intergenic
CTTGAACCAGGTTATGTTGA+TGG 0.376890 1.4:+26948183 MS.gene053373:CDS
GGAGATCCGGGTATAGCGTC+TGG 0.377283 1.4:+26947083 MS.gene053373:CDS
CTGCTTGAACTCTGTGTTGT+AGG 0.380766 1.4:+26947613 MS.gene053373:CDS
AGCAACAATAGCAACAATTC+AGG 0.395323 1.4:+26948591 MS.gene053373:CDS
TCTTCAATGAAGTTGAAGTC+TGG 0.398848 1.4:+26947869 MS.gene053373:CDS
GTGGAGGTCGTACGGGCGGT+AGG 0.422072 1.4:+26948304 MS.gene053373:CDS
TGTGGCTGACTTTGAAGATC+AGG 0.422593 1.4:+26947001 MS.gene053373:CDS
GTAATCTTTCCTCCATGAAC+TGG 0.423372 1.4:-26947666 None:intergenic
AATCTCAATGGTTCACCAAA+TGG 0.424442 1.4:+26947553 MS.gene053373:CDS
TGGAATCATGATGGGAGATC+CGG 0.429258 1.4:+26947070 MS.gene053373:CDS
GGTCGTACGGGCGGTAGGGC+AGG 0.429440 1.4:+26948309 MS.gene053373:CDS
CTTTCATGATTGGATTCTAA+AGG 0.432144 1.4:+26946887 MS.gene053373:CDS
CAGCAGATCCAAGGCTTTGA+GGG 0.438287 1.4:+26948687 MS.gene053373:CDS
AACACCATGCTTCGCTTCAA+CGG 0.441845 1.4:-26948048 None:intergenic
TTAGTAGCAGTTAATTCAAA+AGG 0.442093 1.4:-26948507 None:intergenic
TAACCTGGTTCAAGTCTCCT+TGG 0.445899 1.4:-26948174 None:intergenic
ATGATTGGATTCTAAAGGAC+TGG 0.450134 1.4:+26946892 MS.gene053373:CDS
TGACCAGGTCGCCAAATTGA+TGG 0.454031 1.4:-26947688 None:intergenic
GGCGAATGTATATGAGGATA+CGG 0.455417 1.4:+26948004 MS.gene053373:CDS
ATATGTGGCTCAAAGGGATC+TGG 0.461184 1.4:+26947050 MS.gene053373:CDS
TCACTCAAGCTGGCGAGAAC+CGG 0.461738 1.4:+26947722 MS.gene053373:CDS
CCACTTGTTATTAGAGAAAG+AGG 0.461777 1.4:+26948876 MS.gene053373:CDS
TTCTGGAATATCTTCAGAAA+AGG 0.463757 1.4:-26946942 None:intergenic
TCATGGGGTGTCATATTGGC+AGG 0.466283 1.4:+26947944 MS.gene053373:CDS
ATGCTCATGGGGTGTCATAT+TGG 0.467587 1.4:+26947940 MS.gene053373:CDS
GTTCTATCATGAATGGGACT+TGG 0.469626 1.4:+26947756 MS.gene053373:CDS
GGCGGCGCGTGGAGGTCGTA+CGG 0.472528 1.4:+26948296 MS.gene053373:CDS
AATTTCAATGTCAATCTCAA+TGG 0.474080 1.4:+26947541 MS.gene053373:CDS
GACCCAGTTGAGGATCCATT+TGG 0.474914 1.4:-26947568 None:intergenic
GCGGCGCGTGGAGGTCGTAC+GGG 0.477552 1.4:+26948297 MS.gene053373:CDS
ACAGTGAACAAGTGGCTTAG+AGG 0.478508 1.4:+26948264 MS.gene053373:CDS
AACTCTGCCTATAAGGCCTA+TGG 0.480544 1.4:+26948845 MS.gene053373:CDS
GCAGCAGATCCAAGGCTTTG+AGG 0.480866 1.4:+26948686 MS.gene053373:CDS
GGCGGTAGGGCAGGTTCTGA+TGG 0.483310 1.4:+26948318 MS.gene053373:CDS
TTTAATAATAATAACATGAT+GGG 0.483665 1.4:+26948774 MS.gene053373:CDS
TTTGGGTCCCCTCAAAGCCT+TGG 0.484855 1.4:-26948695 None:intergenic
AGAATGGTTACTAATATCAT+TGG 0.485905 1.4:+26948453 MS.gene053373:CDS
GTATGGGAGTCCCAAATACT+AGG 0.486836 1.4:+26948568 MS.gene053373:CDS
AATGGGTGCAATCAAGAGAC+AGG 0.487255 1.4:+26948723 MS.gene053373:CDS
AACAAGGTCTAATGTTGTGC+AGG 0.487621 1.4:+26948995 MS.gene053373:CDS
TGTGGGATATGTGGCTCAAA+GGG 0.488670 1.4:+26947044 MS.gene053373:CDS
TGATGGCATTAATGATCCTC+AGG 0.491838 1.4:+26948335 MS.gene053373:CDS
TCCTTCAAATACGAAAGGTT+GGG 0.492877 1.4:+26948102 MS.gene053373:CDS
GTGCGTATGAATATTGATAC+CGG 0.494637 1.4:+26949059 MS.gene053373:CDS
GATAGAACTGAAAATGGAAC+CGG 0.494769 1.4:-26947741 None:intergenic
GATATTCCAGAATCAATGTA+AGG 0.495829 1.4:+26946953 MS.gene053373:CDS
TCCATGAACTGGAAGCAGAT+AGG 0.499174 1.4:-26947655 None:intergenic
CTTCAATGAAGTTGAAGTCT+GGG 0.501007 1.4:+26947870 MS.gene053373:CDS
TCAATTTGGCGACCTGGTCA+GGG 0.502279 1.4:+26947691 MS.gene053373:CDS
TGAAGTTGAAGTCTGGGCTC+AGG 0.504456 1.4:+26947876 MS.gene053373:CDS
GTCCTTGGCGAATGTATATG+AGG 0.506337 1.4:+26947998 MS.gene053373:CDS
CTCCTTCAAATACGAAAGGT+TGG 0.506466 1.4:+26948101 MS.gene053373:CDS
GCCAAGTAATGACAAAGGTA+AGG 0.506568 1.4:+26948932 MS.gene053373:CDS
CTAGTTCCATCAACATAACC+TGG 0.509907 1.4:-26948189 None:intergenic
AACCTGGTTCAAGTCTCCTT+GGG 0.511666 1.4:-26948173 None:intergenic
ACAAGTGGACCCTGCACCAT+AGG 0.512247 1.4:-26948861 None:intergenic
TATGCAGTTAGTCAATGGTA+TGG 0.512472 1.4:+26948551 MS.gene053373:CDS
TTGTGGGATATGTGGCTCAA+AGG 0.516632 1.4:+26947043 MS.gene053373:CDS
TGGAGGTCGTACGGGCGGTA+GGG 0.518346 1.4:+26948305 MS.gene053373:CDS
ACTATTATGCAGTTAGTCAA+TGG 0.518810 1.4:+26948546 MS.gene053373:CDS
ATGTTGATGGAACTAGAGGA+TGG 0.520215 1.4:+26948196 MS.gene053373:CDS
GATTCTAAAGGACTGGAGAC+AGG 0.520868 1.4:+26946899 MS.gene053373:CDS
AGGGGACCCAAATGCTGAAT+GGG 0.523030 1.4:+26948706 MS.gene053373:CDS
GTCTTTAAGAAGCTAGAGAT+AGG 0.525612 1.4:+26947826 MS.gene053373:CDS
GGAGGAAGAGTGGCGGCGCG+TGG 0.527888 1.4:+26948285 MS.gene053373:CDS
AATATTGATACCGGGAATGA+AGG 0.528790 1.4:+26949068 MS.gene053373:CDS
TGTTGATGGAACTAGAGGAT+GGG 0.531602 1.4:+26948197 MS.gene053373:CDS
ATTGACCCAGACGCTATACC+CGG 0.534262 1.4:-26947089 None:intergenic
GGAATCATGATGGGAGATCC+GGG 0.534924 1.4:+26947071 MS.gene053373:CDS
AATGAGTTGCAGCAGATCCA+AGG 0.534984 1.4:+26948678 MS.gene053373:CDS
GGCCATAATGGAGGAGGTGA+AGG 0.535818 1.4:+26948474 MS.gene053373:CDS
AAGCATGGTGTTCGAGAAAG+AGG 0.536490 1.4:+26948059 MS.gene053373:CDS
CGAGTATGTTGGTATGCTCA+TGG 0.536633 1.4:+26947927 MS.gene053373:CDS
GAGGGGACCCAAATGCTGAA+TGG 0.538608 1.4:+26948705 MS.gene053373:CDS
TTACCATCAATTTGGCGACC+TGG 0.542386 1.4:+26947685 MS.gene053373:CDS
AAAGGGATCTGGAATCATGA+TGG 0.543360 1.4:+26947061 MS.gene053373:CDS
CGGGAATGAAGGTGCTGGTG+TGG 0.548161 1.4:+26949079 MS.gene053373:CDS
TCGTAAATAAAACTTCCTCA+TGG 0.550457 1.4:-26946838 None:intergenic
CCTCTTTCTCTAATAACAAG+TGG 0.553527 1.4:-26948876 None:intergenic
CACCAAATGGATCCTCAACT+GGG 0.554114 1.4:+26947566 MS.gene053373:CDS
GAGTATGTTGGTATGCTCAT+GGG 0.560183 1.4:+26947928 MS.gene053373:CDS
CCAAGTAATGACAAAGGTAA+GGG 0.563122 1.4:+26948933 MS.gene053373:CDS
ACTGCGGGAGGAATAATAGC+TGG 0.565575 1.4:+26948624 MS.gene053373:CDS
ATCATTGGCCATAATGGAGG+AGG 0.567978 1.4:+26948468 MS.gene053373:CDS
ACACCGATGCTTTCTGCCCA+AGG 0.571909 1.4:+26948157 MS.gene053373:CDS
AAAGGACTGGAGACAGGAAG+AGG 0.574832 1.4:+26946905 MS.gene053373:CDS
CATACTCGTTCATGTAACCA+TGG 0.575372 1.4:-26947912 None:intergenic
CAATTTGGCGACCTGGTCAG+GGG 0.575886 1.4:+26947692 MS.gene053373:CDS
ATGCAGTTAGTCAATGGTAT+GGG 0.576080 1.4:+26948552 MS.gene053373:CDS
GCGAATGTATATGAGGATAC+GGG 0.576922 1.4:+26948005 MS.gene053373:CDS
GACTTCAGAGGTGGGACGTG+TGG 0.578671 1.4:+26948800 MS.gene053373:CDS
TTGGAAAGAGTTCTACAAAA+CGG 0.579627 1.4:+26947775 MS.gene053373:CDS
GTTGATGGAACTAGAGGATG+GGG 0.583044 1.4:+26948198 MS.gene053373:CDS
GTTGCTAGTAACAATGTTGG+AGG 0.584267 1.4:+26949017 MS.gene053373:CDS
CCTATAAGGCCTATGGTGCA+GGG 0.584543 1.4:+26948852 MS.gene053373:CDS
ATGTCTCCTTCAAATACGAA+AGG 0.591107 1.4:+26948097 MS.gene053373:CDS
ATACTCGTTCATGTAACCAT+GGG 0.591871 1.4:-26947911 None:intergenic
TGGAGGAGGTGAAGGACAGT+GGG 0.596064 1.4:+26948482 MS.gene053373:CDS
CAGGTTGCTAGTAACAATGT+TGG 0.597625 1.4:+26949014 MS.gene053373:CDS
AAGGGATCTGGAATCATGAT+GGG 0.600065 1.4:+26947062 MS.gene053373:CDS
TCTCCTTGGGCAGAAAGCAT+CGG 0.601920 1.4:-26948160 None:intergenic
GTTCGAGAAAGAGGATGGTA+CGG 0.602893 1.4:+26948068 MS.gene053373:CDS
GTGGCTTAGAGGAGGAAGAG+TGG 0.602950 1.4:+26948275 MS.gene053373:CDS
GTTGGAGGAGCAGCTGAACA+AGG 0.603670 1.4:+26949032 MS.gene053373:CDS
GGGGTTACTATCACTCAAGC+TGG 0.603702 1.4:+26947712 MS.gene053373:CDS
TACGAAGTGTATTGTGTGTG+TGG 0.604717 1.4:+26946856 MS.gene053373:CDS
TGCCCAAGGAGACTTGAACC+AGG 0.606980 1.4:+26948171 MS.gene053373:CDS
TATTTCAGAGGACCCAGTTG+AGG 0.610000 1.4:-26947578 None:intergenic
TGGGTCAAGGAGAATCAACT+TGG 0.611990 1.4:+26946814 MS.gene053373:CDS
TGCTTCATGTGATATTTCAG+AGG 0.614016 1.4:-26947590 None:intergenic
GGTAAGGGGAAAATGGAAGA+TGG 0.615565 1.4:+26948948 MS.gene053373:CDS
GCGCGTGGAGGTCGTACGGG+CGG 0.616691 1.4:+26948300 MS.gene053373:CDS
GAGATCCGGGTATAGCGTCT+GGG 0.617273 1.4:+26947084 MS.gene053373:CDS
AATATCATTGGCCATAATGG+AGG 0.617996 1.4:+26948465 MS.gene053373:CDS
TCAGGCGTGACAGTTACTGC+GGG 0.618529 1.4:+26948609 MS.gene053373:CDS
AGCAGATCCAAGGCTTTGAG+GGG 0.620452 1.4:+26948688 MS.gene053373:CDS
GGGAATGAAGGTGCTGGTGT+GGG 0.621287 1.4:+26949080 MS.gene053373:CDS
ATGGAGGAGGTGAAGGACAG+TGG 0.621770 1.4:+26948481 MS.gene053373:CDS
GGAAGAGTGGCGGCGCGTGG+AGG 0.623952 1.4:+26948288 MS.gene053373:CDS
GGTTATGTTGATGGAACTAG+AGG 0.624826 1.4:+26948192 MS.gene053373:CDS
ATGGGTGAGACTTCAGAGGT+GGG 0.626426 1.4:+26948792 MS.gene053373:CDS
GTGAACAAGTGGCTTAGAGG+AGG 0.627698 1.4:+26948267 MS.gene053373:CDS
ATGGTGTTCGAGAAAGAGGA+TGG 0.629171 1.4:+26948063 MS.gene053373:CDS
TGCTATTACTGACAAACCAA+AGG 0.629685 1.4:+26948905 MS.gene053373:CDS
GATGGGTGAGACTTCAGAGG+TGG 0.633042 1.4:+26948791 MS.gene053373:CDS
GGCGTGACAGTTACTGCGGG+AGG 0.633748 1.4:+26948612 MS.gene053373:CDS
CATGATGGGTGAGACTTCAG+AGG 0.635082 1.4:+26948788 MS.gene053373:CDS
ATAATAGCTGGAAGTCAACA+AGG 0.635798 1.4:+26948636 MS.gene053373:CDS
TGCGTATGAATATTGATACC+GGG 0.636022 1.4:+26949060 MS.gene053373:CDS
ACATTATTGTGATGTTCCTG+AGG 0.636401 1.4:-26948351 None:intergenic
TTCAGGCGTGACAGTTACTG+CGG 0.637691 1.4:+26948608 MS.gene053373:CDS
CAAGTAATGACAAAGGTAAG+GGG 0.639778 1.4:+26948934 MS.gene053373:CDS
GTAAGGAGCAAATGTTAATG+GGG 0.642617 1.4:+26946970 MS.gene053373:CDS
AATGGGATAACAATGGGTCA+AGG 0.643226 1.4:+26946801 None:intergenic
GGTTACATGAACGAGTATGT+TGG 0.643295 1.4:+26947916 MS.gene053373:CDS
GATACCGGGAATGAAGGTGC+TGG 0.650994 1.4:+26949074 MS.gene053373:CDS
GTAATGTTACAGTGAACAAG+TGG 0.652984 1.4:+26948256 MS.gene053373:CDS
ATCCTCATATACATTCGCCA+AGG 0.654983 1.4:-26948000 None:intergenic
AGGCGAGGCTATCTCTGAGG+TGG 0.655236 1.4:+26947846 MS.gene053373:CDS
GAGAATCAACTTGGTCCATG+AGG 0.669104 1.4:+26946823 MS.gene053373:CDS
AATTTGGCGACCTGGTCAGG+GGG 0.672524 1.4:+26947693 MS.gene053373:CDS
GCTTAGAGGAGGAAGAGTGG+CGG 0.677022 1.4:+26948278 MS.gene053373:CDS
AGTATGTTGGTATGCTCATG+GGG 0.677827 1.4:+26947929 MS.gene053373:CDS
ATGGGTGCAATCAAGAGACA+GGG 0.687518 1.4:+26948724 MS.gene053373:CDS
AATGTATATGAGGATACGGG+TGG 0.688504 1.4:+26948008 MS.gene053373:CDS
GAACTGCCAAGTAATGACAA+AGG 0.690199 1.4:+26948927 MS.gene053373:CDS
TGAACCGTTGAAGCGAAGCA+TGG 0.703453 1.4:+26948044 MS.gene053373:CDS
TAAGAAGCTAGAGATAGGCG+AGG 0.711724 1.4:+26947831 MS.gene053373:CDS
GATAGGCGAGGCTATCTCTG+AGG 0.715135 1.4:+26947843 MS.gene053373:CDS
TACTCGTTCATGTAACCATG+GGG 0.727613 1.4:-26947910 None:intergenic
TATCTGCTTCCAGTTCATGG+AGG 0.762134 1.4:+26947657 MS.gene053373:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATAATAATAACATGAT+GGG + chr1.4:26948774-26948793 MS.gene053373:CDS 10.0%
!!! TTTTAATAATAATAACATGA+TGG + chr1.4:26948773-26948792 MS.gene053373:CDS 10.0%
!! TATATCTAATGCTAATAAAA+CGG + chr1.4:26949300-26949319 MS.gene053373:intron 15.0%
!! ATCAGGAGAATTATATAATT+AGG - chr1.4:26947482-26947501 None:intergenic 20.0%
!!! AAGACTTTTGTTAATCTTAA+TGG + chr1.4:26947343-26947362 MS.gene053373:intron 20.0%
!!! ACAACATTTTCAGAAAATAA+AGG - chr1.4:26949134-26949153 None:intergenic 20.0%
!!! ATTTTCTGAAAATGTTGTAA+TGG + chr1.4:26949136-26949155 MS.gene053373:intron 20.0%
!!! GTTTTTAATAATCAAACCAA+AGG + chr1.4:26947272-26947291 MS.gene053373:intron 20.0%
!!! TTAATCTTAATGGTAATGAA+GGG + chr1.4:26947353-26947372 MS.gene053373:intron 20.0%
!!! TTCAAATAATCACATTGATT+TGG + chr1.4:26949438-26949457 MS.gene053373:intron 20.0%
!!! TTTGATGAAAGCAATTTTTA+TGG + chr1.4:26947976-26947995 MS.gene053373:CDS 20.0%
!!! TTTTTTCCTTTCTTTTCATT+AGG - chr1.4:26949622-26949641 None:intergenic 20.0%
! AAAAAAATGAAAGAGCGAAT+TGG + chr1.4:26949636-26949655 MS.gene053373:intron 25.0%
! AATTTCAATGTCAATCTCAA+TGG + chr1.4:26947541-26947560 MS.gene053373:CDS 25.0%
! AGAATGGTTACTAATATCAT+TGG + chr1.4:26948453-26948472 MS.gene053373:CDS 25.0%
! ATTCATGATAGAACTGAAAA+TGG - chr1.4:26947750-26947769 None:intergenic 25.0%
! CAAAAATGAAGAAAAGAACA+AGG + chr1.4:26948979-26948998 MS.gene053373:CDS 25.0%
! CAATTCGGATAAATTATTTG+TGG + chr1.4:26947108-26947127 MS.gene053373:intron 25.0%
! GAAGTTATAGATGATAACAA+AGG + chr1.4:26949460-26949479 MS.gene053373:intron 25.0%
! GTAGTTCTTTATCTCATTTA+TGG + chr1.4:26947143-26947162 MS.gene053373:intron 25.0%
! TTAGTAGCAGTTAATTCAAA+AGG - chr1.4:26948510-26948529 None:intergenic 25.0%
! TTCTTTATCTCATTTATGGA+AGG + chr1.4:26947147-26947166 MS.gene053373:intron 25.0%
!! ACAACAAAATCTTTTCTTGT+GGG + chr1.4:26947027-26947046 MS.gene053373:CDS 25.0%
!! ATTCCAACTAATCATTTTCA+TGG - chr1.4:26949191-26949210 None:intergenic 25.0%
!! ATTTTCAGTTCTATCATGAA+TGG + chr1.4:26947749-26947768 MS.gene053373:CDS 25.0%
!! GAATTTTGTTACTAACAGTA+TGG + chr1.4:26947516-26947535 MS.gene053373:intron 25.0%
!! GTTAATCTTAATGGTAATGA+AGG + chr1.4:26947352-26947371 MS.gene053373:intron 25.0%
!! TCACAATAATGTTGTTGTTA+TGG + chr1.4:26948362-26948381 MS.gene053373:CDS 25.0%
!! TTTTCAGTTCTATCATGAAT+GGG + chr1.4:26947750-26947769 MS.gene053373:CDS 25.0%
AAGATAAAACTCTGCCTATA+AGG + chr1.4:26948838-26948857 MS.gene053373:CDS 30.0%
ACTAATATCATTGGCCATAA+TGG + chr1.4:26948462-26948481 MS.gene053373:CDS 30.0%
ACTATTATGCAGTTAGTCAA+TGG + chr1.4:26948546-26948565 MS.gene053373:CDS 30.0%
AGAGCGAATTGGTTAATAAA+TGG + chr1.4:26949647-26949666 MS.gene053373:intron 30.0%
AGGAAAGATTACCATCAATT+TGG + chr1.4:26947677-26947696 MS.gene053373:CDS 30.0%
ATACCTTGTACAATACTGAT+TGG + chr1.4:26947393-26947412 MS.gene053373:intron 30.0%
ATATAGTCTCACAAAGAAAG+AGG - chr1.4:26949285-26949304 None:intergenic 30.0%
ATCTAATGCTAATAAAACGG+AGG + chr1.4:26949303-26949322 MS.gene053373:intron 30.0%
ATGTAAGGAGCAAATGTTAA+TGG + chr1.4:26946968-26946987 MS.gene053373:CDS 30.0%
CAAACTCATCAAATTTACCT+TGG + chr1.4:26949563-26949582 MS.gene053373:intron 30.0%
CATAGTATTTAAAGGGAGTA+TGG + chr1.4:26947421-26947440 MS.gene053373:intron 30.0%
CATATCAGAAGGATTTATTG+TGG + chr1.4:26947296-26947315 MS.gene053373:intron 30.0%
CTGAAGGTTATTTGTATACT+TGG + chr1.4:26949714-26949733 MS.gene053373:intron 30.0%
CTTTCATGATTGGATTCTAA+AGG + chr1.4:26946887-26946906 MS.gene053373:CDS 30.0%
GATAAAGAACTACTATCAGA+AGG - chr1.4:26947136-26947155 None:intergenic 30.0%
GATATTCCAGAATCAATGTA+AGG + chr1.4:26946953-26946972 MS.gene053373:CDS 30.0%
GGGGAAACATAGTATTTAAA+GGG + chr1.4:26947414-26947433 MS.gene053373:intron 30.0%
GTATATCATTAAAGTCACCA+AGG - chr1.4:26949594-26949613 None:intergenic 30.0%
TAGATGATAACAAAGGAAAG+TGG + chr1.4:26949467-26949486 MS.gene053373:intron 30.0%
TATACTTGGTTCAAATGTCT+TGG + chr1.4:26949728-26949747 MS.gene053373:intron 30.0%
TATTGTTGCTCCTAGTATTT+GGG - chr1.4:26948581-26948600 None:intergenic 30.0%
TCGTAAATAAAACTTCCTCA+TGG - chr1.4:26946841-26946860 None:intergenic 30.0%
TGGGGAAACATAGTATTTAA+AGG + chr1.4:26947413-26947432 MS.gene053373:intron 30.0%
TGTAAGGAGCAAATGTTAAT+GGG + chr1.4:26946969-26946988 MS.gene053373:CDS 30.0%
TTAAACTAGGAATTGTACGA+GGG - chr1.4:26949231-26949250 None:intergenic 30.0%
TTGGAAAGAGTTCTACAAAA+CGG + chr1.4:26947775-26947794 MS.gene053373:CDS 30.0%
TTTAAACTAGGAATTGTACG+AGG - chr1.4:26949232-26949251 None:intergenic 30.0%
! AAAGCAATTTTTATGGTCCT+TGG + chr1.4:26947983-26948002 MS.gene053373:CDS 30.0%
! ATGATTAGTTGGAATTGTAG+AGG + chr1.4:26949196-26949215 MS.gene053373:intron 30.0%
! GACAACAAAATCTTTTCTTG+TGG + chr1.4:26947026-26947045 MS.gene053373:CDS 30.0%
! TACCTTGTACAATACTGATT+GGG + chr1.4:26947394-26947413 MS.gene053373:intron 30.0%
! TATAATTAGGTTGCATGAGT+TGG - chr1.4:26947469-26947488 None:intergenic 30.0%
! TGGTACGTACATGTTATTTA+AGG + chr1.4:26947223-26947242 MS.gene053373:intron 30.0%
! TTCTGAAAATGTTGTAATGG+CGG + chr1.4:26949139-26949158 MS.gene053373:intron 30.0%
!! AATCATGTTACTTTGTGAAC+CGG + chr1.4:26949868-26949887 MS.gene053373:intron 30.0%
!! AGGATTTACTTTTCACAGAA+TGG + chr1.4:26948437-26948456 MS.gene053373:CDS 30.0%
!! CTTTTCTTCATTTTTGTAGC+TGG - chr1.4:26948975-26948994 None:intergenic 30.0%
!! TGGATGAGGTATTTTAAACT+AGG - chr1.4:26949244-26949263 None:intergenic 30.0%
!! TTCTGGAATATCTTCAGAAA+AGG - chr1.4:26946945-26946964 None:intergenic 30.0%
AAACCAAAGGACATATCAGA+AGG + chr1.4:26947285-26947304 MS.gene053373:intron 35.0%
AATATCATTGGCCATAATGG+AGG + chr1.4:26948465-26948484 MS.gene053373:CDS 35.0%
AATATTGATACCGGGAATGA+AGG + chr1.4:26949068-26949087 MS.gene053373:CDS 35.0%
AATCCTTCTGATATGTCCTT+TGG - chr1.4:26947291-26947310 None:intergenic 35.0%
AATCTCAATGGTTCACCAAA+TGG + chr1.4:26947553-26947572 MS.gene053373:CDS 35.0%
ACATTATTGTGATGTTCCTG+AGG - chr1.4:26948354-26948373 None:intergenic 35.0%
AGCAACAATAGCAACAATTC+AGG + chr1.4:26948591-26948610 MS.gene053373:CDS 35.0%
AGTTGGAATTGTAGAGGTTT+AGG + chr1.4:26949202-26949221 MS.gene053373:intron 35.0%
ATAATAGCTGGAAGTCAACA+AGG + chr1.4:26948636-26948655 MS.gene053373:CDS 35.0%
ATACTCGTTCATGTAACCAT+GGG - chr1.4:26947914-26947933 None:intergenic 35.0%
ATGCAGTTAGTCAATGGTAT+GGG + chr1.4:26948552-26948571 MS.gene053373:CDS 35.0%
ATGTCTCCTTCAAATACGAA+AGG + chr1.4:26948097-26948116 MS.gene053373:CDS 35.0%
CAAGTAATGACAAAGGTAAG+GGG + chr1.4:26948934-26948953 MS.gene053373:CDS 35.0%
CCAAGTAATGACAAAGGTAA+GGG + chr1.4:26948933-26948952 MS.gene053373:CDS 35.0%
CCTCATCCAAGTTTATAAAC+CGG + chr1.4:26949255-26949274 MS.gene053373:intron 35.0%
CCTCTTTCTCTAATAACAAG+TGG - chr1.4:26948879-26948898 None:intergenic 35.0%
CTATTGTTGCTCCTAGTATT+TGG - chr1.4:26948582-26948601 None:intergenic 35.0%
CTTCAATGAAGTTGAAGTCT+GGG + chr1.4:26947870-26947889 MS.gene053373:CDS 35.0%
CTTTCGCCTAATGAAAAGAA+AGG + chr1.4:26949613-26949632 MS.gene053373:intron 35.0%
GAAGGATTTATTGTGGAATC+TGG + chr1.4:26947303-26947322 MS.gene053373:intron 35.0%
GAGCCATGAAAATGATTAGT+TGG + chr1.4:26949185-26949204 MS.gene053373:intron 35.0%
GAGTGTAGATATTGTTATGC+AGG + chr1.4:26947245-26947264 MS.gene053373:intron 35.0%
GATAGAACTGAAAATGGAAC+CGG - chr1.4:26947744-26947763 None:intergenic 35.0%
GGAGGAATTAAAATATGTGC+TGG + chr1.4:26949321-26949340 MS.gene053373:intron 35.0%
GGTTCACAAAGTAACATGAT+TGG - chr1.4:26949869-26949888 None:intergenic 35.0%
GTAAGGAGCAAATGTTAATG+GGG + chr1.4:26946970-26946989 MS.gene053373:CDS 35.0%
GTAATGTTACAGTGAACAAG+TGG + chr1.4:26948256-26948275 MS.gene053373:CDS 35.0%
GTGCGTATGAATATTGATAC+CGG + chr1.4:26949059-26949078 MS.gene053373:CDS 35.0%
TATGCAGTTAGTCAATGGTA+TGG + chr1.4:26948551-26948570 MS.gene053373:CDS 35.0%
TCAACCAAAAAATCCCTCTT+TGG + chr1.4:26947198-26947217 MS.gene053373:intron 35.0%
TCCTTCAAATACGAAAGGTT+GGG + chr1.4:26948102-26948121 MS.gene053373:CDS 35.0%
TCTTCAATGAAGTTGAAGTC+TGG + chr1.4:26947869-26947888 MS.gene053373:CDS 35.0%
TGATGGAAAACCATAGTAAC+CGG - chr1.4:26949500-26949519 None:intergenic 35.0%
TGCGTATGAATATTGATACC+GGG + chr1.4:26949060-26949079 MS.gene053373:CDS 35.0%
TGCTATTACTGACAAACCAA+AGG + chr1.4:26948905-26948924 MS.gene053373:CDS 35.0%
TGCTTCATGTGATATTTCAG+AGG - chr1.4:26947593-26947612 None:intergenic 35.0%
TTATCAGATGTTCACACTGA+AGG + chr1.4:26949698-26949717 MS.gene053373:intron 35.0%
TTCAGACAGACACAAATATC+AGG - chr1.4:26947499-26947518 None:intergenic 35.0%
! AAATTTTCCAACACTGCATC+TGG - chr1.4:26949821-26949840 None:intergenic 35.0%
! ACCTTGTACAATACTGATTG+GGG + chr1.4:26947395-26947414 MS.gene053373:intron 35.0%
! ACTATGGTTTTCCATCACAT+GGG + chr1.4:26949503-26949522 MS.gene053373:intron 35.0%
! AGTATTTAAAGGGAGTATGG+AGG + chr1.4:26947424-26947443 MS.gene053373:intron 35.0%
! ATCTTTTCTTGTGGGATATG+TGG + chr1.4:26947035-26947054 MS.gene053373:CDS 35.0%
! ATGATTGGATTCTAAAGGAC+TGG + chr1.4:26946892-26946911 MS.gene053373:CDS 35.0%
! CTAATCATTTTCATGGCTCT+TGG - chr1.4:26949184-26949203 None:intergenic 35.0%
! GTCTTTAAGAAGCTAGAGAT+AGG + chr1.4:26947826-26947845 MS.gene053373:CDS 35.0%
! GTTAATGGGGTTGAATTTTG+TGG + chr1.4:26946983-26947002 MS.gene053373:CDS 35.0%
! TACTATGGTTTTCCATCACA+TGG + chr1.4:26949502-26949521 MS.gene053373:intron 35.0%
! TCTTAATGGTAATGAAGGGA+AGG + chr1.4:26947357-26947376 MS.gene053373:intron 35.0%
!! ATCATGTTACTTTGTGAACC+GGG + chr1.4:26949869-26949888 MS.gene053373:intron 35.0%
!! CCACTTGTTATTAGAGAAAG+AGG + chr1.4:26948876-26948895 MS.gene053373:CDS 35.0%
!! GGATCTTTAGCTTTCATGAT+TGG + chr1.4:26946877-26946896 MS.gene053373:CDS 35.0%
!! TTTGCTCCTTACATTGATTC+TGG - chr1.4:26946962-26946981 None:intergenic 35.0%
!!! GACTTTTGATGGATTTTTGC+TGG + chr1.4:26947804-26947823 MS.gene053373:CDS 35.0%
AACAAGGTCTAATGTTGTGC+AGG + chr1.4:26948995-26949014 MS.gene053373:CDS 40.0%
AACATCTGATAAACCCGCAT+CGG - chr1.4:26949690-26949709 None:intergenic 40.0%
AATGTATATGAGGATACGGG+TGG + chr1.4:26948008-26948027 MS.gene053373:CDS 40.0%
ACAATTTCCAGATGCAGTGT+TGG + chr1.4:26949811-26949830 MS.gene053373:intron 40.0%
AGTATGTTGGTATGCTCATG+GGG + chr1.4:26947929-26947948 MS.gene053373:CDS 40.0%
ATCCTCATATACATTCGCCA+AGG - chr1.4:26948003-26948022 None:intergenic 40.0%
ATGAAGGGAAGGATTATGGA+TGG + chr1.4:26947368-26947387 MS.gene053373:intron 40.0%
ATTGCACCCATTCAGCATTT+GGG - chr1.4:26948715-26948734 None:intergenic 40.0%
ATTGGATAGTGATCAGAGGA+AGG - chr1.4:26949851-26949870 None:intergenic 40.0%
CAAAAAATCCCTCTTTGGTG+TGG + chr1.4:26947203-26947222 MS.gene053373:intron 40.0%
CAGGTTGCTAGTAACAATGT+TGG + chr1.4:26949014-26949033 MS.gene053373:CDS 40.0%
CATACTCGTTCATGTAACCA+TGG - chr1.4:26947915-26947934 None:intergenic 40.0%
CATGATTGGATAGTGATCAG+AGG - chr1.4:26949855-26949874 None:intergenic 40.0%
CCCTTACCTTTGTCATTACT+TGG - chr1.4:26948936-26948955 None:intergenic 40.0%
CCGGTTTATAAACTTGGATG+AGG - chr1.4:26949258-26949277 None:intergenic 40.0%
CTAGTTCCATCAACATAACC+TGG - chr1.4:26948192-26948211 None:intergenic 40.0%
CTCCTTCAAATACGAAAGGT+TGG + chr1.4:26948101-26948120 MS.gene053373:CDS 40.0%
CTTGAACCAGGTTATGTTGA+TGG + chr1.4:26948183-26948202 MS.gene053373:CDS 40.0%
GAACTGCCAAGTAATGACAA+AGG + chr1.4:26948927-26948946 MS.gene053373:CDS 40.0%
GAGATGCATGGAACTTTCTT+AGG + chr1.4:26949533-26949552 MS.gene053373:intron 40.0%
GAGTATGTTGGTATGCTCAT+GGG + chr1.4:26947928-26947947 MS.gene053373:CDS 40.0%
GAGTTCTACAAAACGGTCTT+TGG + chr1.4:26947782-26947801 MS.gene053373:CDS 40.0%
GCCAAGTAATGACAAAGGTA+AGG + chr1.4:26948932-26948951 MS.gene053373:CDS 40.0%
GCGAATGTATATGAGGATAC+GGG + chr1.4:26948005-26948024 MS.gene053373:CDS 40.0%
GGACATCCGGTTTATAAACT+TGG - chr1.4:26949264-26949283 None:intergenic 40.0%
GGCGAATGTATATGAGGATA+CGG + chr1.4:26948004-26948023 MS.gene053373:CDS 40.0%
GGTAATGAAGGGAAGGATTA+TGG + chr1.4:26947364-26947383 MS.gene053373:intron 40.0%
GGTTACATGAACGAGTATGT+TGG + chr1.4:26947916-26947935 MS.gene053373:CDS 40.0%
GTAATCTTTCCTCCATGAAC+TGG - chr1.4:26947669-26947688 None:intergenic 40.0%
GTTCTATCATGAATGGGACT+TGG + chr1.4:26947756-26947775 MS.gene053373:CDS 40.0%
GTTGCTAGTAACAATGTTGG+AGG + chr1.4:26949017-26949036 MS.gene053373:CDS 40.0%
TACGAAGTGTATTGTGTGTG+TGG + chr1.4:26946856-26946875 MS.gene053373:CDS 40.0%
TACTCGTTCATGTAACCATG+GGG - chr1.4:26947913-26947932 None:intergenic 40.0%
TCACAAAGAAAGAGGACATC+CGG - chr1.4:26949277-26949296 None:intergenic 40.0%
TCATTACTTGGCAGTTCCTT+TGG - chr1.4:26948924-26948943 None:intergenic 40.0%
TCCCAACCTTTCGTATTTGA+AGG - chr1.4:26948106-26948125 None:intergenic 40.0%
TCCCCAATCAGTATTGTACA+AGG - chr1.4:26947399-26947418 None:intergenic 40.0%
TGAAAATGTTGTAATGGCGG+AGG + chr1.4:26949142-26949161 MS.gene053373:intron 40.0%
TGACAAAGGTAAGGGGAAAA+TGG + chr1.4:26948941-26948960 MS.gene053373:CDS 40.0%
TGATGGCATTAATGATCCTC+AGG + chr1.4:26948335-26948354 MS.gene053373:CDS 40.0%
TGCTACATCTGTGGCATAAT+GGG + chr1.4:26948132-26948151 MS.gene053373:CDS 40.0%
TTGCTACATCTGTGGCATAA+TGG + chr1.4:26948131-26948150 MS.gene053373:CDS 40.0%
! AAAGGGATCTGGAATCATGA+TGG + chr1.4:26947061-26947080 MS.gene053373:CDS 40.0%
! AACGGTCTTTGGACTTTTGA+TGG + chr1.4:26947793-26947812 MS.gene053373:CDS 40.0%
! AAGGGATCTGGAATCATGAT+GGG + chr1.4:26947062-26947081 MS.gene053373:CDS 40.0%
! AATTTACCTTGGTGCATCCT+TGG + chr1.4:26949574-26949593 MS.gene053373:intron 40.0%
! ATCATTTTCATGGCTCTTGG+CGG - chr1.4:26949181-26949200 None:intergenic 40.0%
! ATGTTGATGGAACTAGAGGA+TGG + chr1.4:26948196-26948215 MS.gene053373:CDS 40.0%
! ATTTAAAGGGAGTATGGAGG+AGG + chr1.4:26947427-26947446 MS.gene053373:intron 40.0%
! CAGGTTTTTAATCTTCCCCA+TGG + chr1.4:26947895-26947914 MS.gene053373:CDS 40.0%
! GGTTATGTTGATGGAACTAG+AGG + chr1.4:26948192-26948211 MS.gene053373:CDS 40.0%
! TGTTGATGGAACTAGAGGAT+GGG + chr1.4:26948197-26948216 MS.gene053373:CDS 40.0%
! TGTTTTACTGTTGATCGCCA+AGG + chr1.4:26949355-26949374 MS.gene053373:intron 40.0%
!! GGAGTATTTTGCTACATCTG+TGG + chr1.4:26948123-26948142 MS.gene053373:CDS 40.0%
!! GTGGTGGTCTTGTTCTTTAT+TGG + chr1.4:26949383-26949402 MS.gene053373:intron 40.0%
!!! CACACCAAAGAGGGATTTTT+TGG - chr1.4:26947205-26947224 None:intergenic 40.0%
AACACCATGCTTCGCTTCAA+CGG - chr1.4:26948051-26948070 None:intergenic 45.0%
AACCTGGTTCAAGTCTCCTT+GGG - chr1.4:26948176-26948195 None:intergenic 45.0%
AACTCTGCCTATAAGGCCTA+TGG + chr1.4:26948845-26948864 MS.gene053373:CDS 45.0%
AAGCATGGTGTTCGAGAAAG+AGG + chr1.4:26948059-26948078 MS.gene053373:CDS 45.0%
AATGAGTTGCAGCAGATCCA+AGG + chr1.4:26948678-26948697 MS.gene053373:CDS 45.0%
AATGGGTGCAATCAAGAGAC+AGG + chr1.4:26948723-26948742 MS.gene053373:CDS 45.0%
ACAGTGAACAAGTGGCTTAG+AGG + chr1.4:26948264-26948283 MS.gene053373:CDS 45.0%
ATATGTGGCTCAAAGGGATC+TGG + chr1.4:26947050-26947069 MS.gene053373:CDS 45.0%
ATGGGTGCAATCAAGAGACA+GGG + chr1.4:26948724-26948743 MS.gene053373:CDS 45.0%
ATGGTGTTCGAGAAAGAGGA+TGG + chr1.4:26948063-26948082 MS.gene053373:CDS 45.0%
ATGTACGTACCACACCAAAG+AGG - chr1.4:26947215-26947234 None:intergenic 45.0%
CAAGTCTCTCTTCTACAGCT+CGG - chr1.4:26949760-26949779 None:intergenic 45.0%
CACCAAATGGATCCTCAACT+GGG + chr1.4:26947566-26947585 MS.gene053373:CDS 45.0%
CGAGTATGTTGGTATGCTCA+TGG + chr1.4:26947927-26947946 MS.gene053373:CDS 45.0%
CTGCTTGAACTCTGTGTTGT+AGG + chr1.4:26947613-26947632 MS.gene053373:CDS 45.0%
GAGAATCAACTTGGTCCATG+AGG + chr1.4:26946823-26946842 MS.gene053373:CDS 45.0%
GATTGCACCCATTCAGCATT+TGG - chr1.4:26948716-26948735 None:intergenic 45.0%
GGTAAGGGGAAAATGGAAGA+TGG + chr1.4:26948948-26948967 MS.gene053373:CDS 45.0%
GTATAGCGTCTGGGTCAATT+CGG + chr1.4:26947093-26947112 MS.gene053373:intron 45.0%
GTATGGGAGTCCCAAATACT+AGG + chr1.4:26948568-26948587 MS.gene053373:CDS 45.0%
GTCCTTGGCGAATGTATATG+AGG + chr1.4:26947998-26948017 MS.gene053373:CDS 45.0%
GTTCGAGAAAGAGGATGGTA+CGG + chr1.4:26948068-26948087 MS.gene053373:CDS 45.0%
TAACCTGGTTCAAGTCTCCT+TGG - chr1.4:26948177-26948196 None:intergenic 45.0%
TAAGAAGCTAGAGATAGGCG+AGG + chr1.4:26947831-26947850 MS.gene053373:CDS 45.0%
TATCTGCTTCCAGTTCATGG+AGG + chr1.4:26947657-26947676 MS.gene053373:CDS 45.0%
TATTTCAGAGGACCCAGTTG+AGG - chr1.4:26947581-26947600 None:intergenic 45.0%
TCACCAAATGGATCCTCAAC+TGG + chr1.4:26947565-26947584 MS.gene053373:CDS 45.0%
TCCATGAACTGGAAGCAGAT+AGG - chr1.4:26947658-26947677 None:intergenic 45.0%
TGGGTCAAGGAGAATCAACT+TGG + chr1.4:26946814-26946833 MS.gene053373:CDS 45.0%
TGTACGTACCACACCAAAGA+GGG - chr1.4:26947214-26947233 None:intergenic 45.0%
TGTGGGATATGTGGCTCAAA+GGG + chr1.4:26947044-26947063 MS.gene053373:CDS 45.0%
TTACCATCAATTTGGCGACC+TGG + chr1.4:26947685-26947704 MS.gene053373:CDS 45.0%
TTACTGTTGATCGCCAAGGT+CGG + chr1.4:26949359-26949378 MS.gene053373:intron 45.0%
TTGCCATGCATCTGTTGCAA+GGG - chr1.4:26949789-26949808 None:intergenic 45.0%
TTGTGGGATATGTGGCTCAA+AGG + chr1.4:26947043-26947062 MS.gene053373:CDS 45.0%
TTTGCCATGCATCTGTTGCA+AGG - chr1.4:26949790-26949809 None:intergenic 45.0%
! ATCATTGGCCATAATGGAGG+AGG + chr1.4:26948468-26948487 MS.gene053373:CDS 45.0%
! ATGCTCATGGGGTGTCATAT+TGG + chr1.4:26947940-26947959 MS.gene053373:CDS 45.0%
! ATGGTTTTCCATCACATGGG+AGG + chr1.4:26949506-26949525 MS.gene053373:intron 45.0%
! GATTCTAAAGGACTGGAGAC+AGG + chr1.4:26946899-26946918 MS.gene053373:CDS 45.0%
! GTTGATGGAACTAGAGGATG+GGG + chr1.4:26948198-26948217 MS.gene053373:CDS 45.0%
! TCATTTTCATGGCTCTTGGC+GGG - chr1.4:26949180-26949199 None:intergenic 45.0%
! TGGAATCATGATGGGAGATC+CGG + chr1.4:26947070-26947089 MS.gene053373:CDS 45.0%
! TGTGGCTGACTTTGAAGATC+AGG + chr1.4:26947001-26947020 MS.gene053373:CDS 45.0%
!! GGGGTCATTTTCTGAATGCT+GGG + chr1.4:26948217-26948236 MS.gene053373:CDS 45.0%
!! GGGTCATTTTCTGAATGCTG+GGG + chr1.4:26948218-26948237 MS.gene053373:CDS 45.0%
!! GGTCATTTTCTGAATGCTGG+GGG + chr1.4:26948219-26948238 MS.gene053373:CDS 45.0%
!! TGGGGTCATTTTCTGAATGC+TGG + chr1.4:26948216-26948235 MS.gene053373:CDS 45.0%
AAAGGAAAGTGGCGAGCTAC+CGG + chr1.4:26949478-26949497 MS.gene053373:intron 50.0%
AAAGGACTGGAGACAGGAAG+AGG + chr1.4:26946905-26946924 MS.gene053373:CDS 50.0%
AAGTCACCAAGGATGCACCA+AGG - chr1.4:26949583-26949602 None:intergenic 50.0%
ACTGCGGGAGGAATAATAGC+TGG + chr1.4:26948624-26948643 MS.gene053373:CDS 50.0%
AGGGGACCCAAATGCTGAAT+GGG + chr1.4:26948706-26948725 MS.gene053373:CDS 50.0%
ATCAATTTGGCGACCTGGTC+AGG + chr1.4:26947690-26947709 MS.gene053373:CDS 50.0%
ATCCTCCTCCGCGCAAAATT+CGG - chr1.4:26948422-26948441 None:intergenic 50.0%
ATGGGTGAGACTTCAGAGGT+GGG + chr1.4:26948792-26948811 MS.gene053373:CDS 50.0%
ATTGACCCAGACGCTATACC+CGG - chr1.4:26947092-26947111 None:intergenic 50.0%
CCTATAAGGCCTATGGTGCA+GGG + chr1.4:26948852-26948871 MS.gene053373:CDS 50.0%
GACCCAGTTGAGGATCCATT+TGG - chr1.4:26947571-26947590 None:intergenic 50.0%
GCCTATCTGCTTCCAGTTCA+TGG + chr1.4:26947654-26947673 MS.gene053373:CDS 50.0%
GGGGTTACTATCACTCAAGC+TGG + chr1.4:26947712-26947731 MS.gene053373:CDS 50.0%
GTCCTTCACCTCCTCCATTA+TGG - chr1.4:26948479-26948498 None:intergenic 50.0%
GTGAACAAGTGGCTTAGAGG+AGG + chr1.4:26948267-26948286 MS.gene053373:CDS 50.0%
TCAATTTGGCGACCTGGTCA+GGG + chr1.4:26947691-26947710 MS.gene053373:CDS 50.0%
TCGTAATGCAGTGACCGATG+CGG + chr1.4:26949673-26949692 MS.gene053373:intron 50.0%
TGAACCGTTGAAGCGAAGCA+TGG + chr1.4:26948044-26948063 MS.gene053373:CDS 50.0%
TGAAGTTGAAGTCTGGGCTC+AGG + chr1.4:26947876-26947895 MS.gene053373:CDS 50.0%
TGACCAGGTCGCCAAATTGA+TGG - chr1.4:26947691-26947710 None:intergenic 50.0%
TTCAGGCGTGACAGTTACTG+CGG + chr1.4:26948608-26948627 MS.gene053373:CDS 50.0%
! CAGCAGATCCAAGGCTTTGA+GGG + chr1.4:26948687-26948706 MS.gene053373:CDS 50.0%
! CATTTTCATGGCTCTTGGCG+GGG - chr1.4:26949179-26949198 None:intergenic 50.0%
! GGAATCATGATGGGAGATCC+GGG + chr1.4:26947071-26947090 MS.gene053373:CDS 50.0%
! TAGTGATCAGAGGAAGGTGC+TGG - chr1.4:26949845-26949864 None:intergenic 50.0%
! TCATGGGGTGTCATATTGGC+AGG + chr1.4:26947944-26947963 MS.gene053373:CDS 50.0%
! TCTCCTTGGGCAGAAAGCAT+CGG - chr1.4:26948163-26948182 None:intergenic 50.0%
!! AGCAGATCCAAGGCTTTGAG+GGG + chr1.4:26948688-26948707 MS.gene053373:CDS 50.0%
!! CATGATGGGTGAGACTTCAG+AGG + chr1.4:26948788-26948807 MS.gene053373:CDS 50.0%
AATGCTGGGGGTCGCAATGT+TGG + chr1.4:26948231-26948250 MS.gene053373:CDS 55.0%
AATTTGGCGACCTGGTCAGG+GGG + chr1.4:26947693-26947712 MS.gene053373:CDS 55.0%
ACAAGTGGACCCTGCACCAT+AGG - chr1.4:26948864-26948883 None:intergenic 55.0%
ACACCGATGCTTTCTGCCCA+AGG + chr1.4:26948157-26948176 MS.gene053373:CDS 55.0%
ATGGAGGAGGTGAAGGACAG+TGG + chr1.4:26948481-26948500 MS.gene053373:CDS 55.0%
ATGGGAGGCAGAGAGATGCA+TGG + chr1.4:26949521-26949540 MS.gene053373:intron 55.0%
CAATTTGGCGACCTGGTCAG+GGG + chr1.4:26947692-26947711 MS.gene053373:CDS 55.0%
CACACCAGCACCTTCATTCC+CGG - chr1.4:26949081-26949100 None:intergenic 55.0%
CGTAATGCAGTGACCGATGC+GGG + chr1.4:26949674-26949693 MS.gene053373:intron 55.0%
GAGATCCGGGTATAGCGTCT+GGG + chr1.4:26947084-26947103 MS.gene053373:CDS 55.0%
GAGGGGACCCAAATGCTGAA+TGG + chr1.4:26948705-26948724 MS.gene053373:CDS 55.0%
GATAGGCGAGGCTATCTCTG+AGG + chr1.4:26947843-26947862 MS.gene053373:CDS 55.0%
GATGGGTGAGACTTCAGAGG+TGG + chr1.4:26948791-26948810 MS.gene053373:CDS 55.0%
GCAGCAGATCCAAGGCTTTG+AGG + chr1.4:26948686-26948705 MS.gene053373:CDS 55.0%
GCCTATAAGGCCTATGGTGC+AGG + chr1.4:26948851-26948870 MS.gene053373:CDS 55.0%
GCTTAGAGGAGGAAGAGTGG+CGG + chr1.4:26948278-26948297 MS.gene053373:CDS 55.0%
GTGATAGTAACCCCCTGACC+AGG - chr1.4:26947706-26947725 None:intergenic 55.0%
GTGGCTTAGAGGAGGAAGAG+TGG + chr1.4:26948275-26948294 MS.gene053373:CDS 55.0%
GTTGGAGGAGCAGCTGAACA+AGG + chr1.4:26949032-26949051 MS.gene053373:CDS 55.0%
TACTTTGTGAACCGGGTCCG+AGG + chr1.4:26949876-26949895 MS.gene053373:intron 55.0%
TCACTCAAGCTGGCGAGAAC+CGG + chr1.4:26947722-26947741 MS.gene053373:CDS 55.0%
TCAGGCGTGACAGTTACTGC+GGG + chr1.4:26948609-26948628 MS.gene053373:CDS 55.0%
TCTCTCTGCCTCCCATGTGA+TGG - chr1.4:26949517-26949536 None:intergenic 55.0%
TGCCCAAGGAGACTTGAACC+AGG + chr1.4:26948171-26948190 MS.gene053373:CDS 55.0%
TGGAGGAGGTGAAGGACAGT+GGG + chr1.4:26948482-26948501 MS.gene053373:CDS 55.0%
TTACGTTTCTGCCTCGGACC+CGG - chr1.4:26949890-26949909 None:intergenic 55.0%
TTTGGGTCCCCTCAAAGCCT+TGG - chr1.4:26948698-26948717 None:intergenic 55.0%
! CCCTGCACCATAGGCCTTAT+AGG - chr1.4:26948855-26948874 None:intergenic 55.0%
! GAGCGTGTCCGAATTTTGCG+CGG + chr1.4:26948411-26948430 MS.gene053373:CDS 55.0%
! GATACCGGGAATGAAGGTGC+TGG + chr1.4:26949074-26949093 MS.gene053373:CDS 55.0%
! GGCCATAATGGAGGAGGTGA+AGG + chr1.4:26948474-26948493 MS.gene053373:CDS 55.0%
! TGGCGAGCTACCGGTTACTA+TGG + chr1.4:26949487-26949506 MS.gene053373:intron 55.0%
!! GGGAATGAAGGTGCTGGTGT+GGG + chr1.4:26949080-26949099 MS.gene053373:CDS 55.0%
CAAGACCACCACTCCGACCT+TGG - chr1.4:26949375-26949394 None:intergenic 60.0%
GACTTCAGAGGTGGGACGTG+TGG + chr1.4:26948800-26948819 MS.gene053373:CDS 60.0%
GCGCCCTTGCAACAGATGCA+TGG + chr1.4:26949783-26949802 MS.gene053373:intron 60.0%
GGAGATCCGGGTATAGCGTC+TGG + chr1.4:26947083-26947102 MS.gene053373:CDS 60.0%
GTTGATCGCCAAGGTCGGAG+TGG + chr1.4:26949364-26949383 MS.gene053373:intron 60.0%
! AGGCGAGGCTATCTCTGAGG+TGG + chr1.4:26947846-26947865 MS.gene053373:CDS 60.0%
! CGTGTCCGAATTTTGCGCGG+AGG + chr1.4:26948414-26948433 MS.gene053373:CDS 60.0%
! GTCCGAATTTTGCGCGGAGG+AGG + chr1.4:26948417-26948436 MS.gene053373:CDS 60.0%
!! CGGGAATGAAGGTGCTGGTG+TGG + chr1.4:26949079-26949098 MS.gene053373:CDS 60.0%
GATCGCCAAGGTCGGAGTGG+TGG + chr1.4:26949367-26949386 MS.gene053373:intron 65.0%
GCTGGGGGTCGCAATGTTGG+CGG + chr1.4:26948234-26948253 MS.gene053373:CDS 65.0%
GGCGTGACAGTTACTGCGGG+AGG + chr1.4:26948612-26948631 MS.gene053373:CDS 65.0%
TGGAGGTCGTACGGGCGGTA+GGG + chr1.4:26948305-26948324 MS.gene053373:CDS 65.0%
! GGCGGTAGGGCAGGTTCTGA+TGG + chr1.4:26948318-26948337 MS.gene053373:CDS 65.0%
GTGGAGGTCGTACGGGCGGT+AGG + chr1.4:26948304-26948323 MS.gene053373:CDS 70.0%
GCGCGTGGAGGTCGTACGGG+CGG + chr1.4:26948300-26948319 MS.gene053373:CDS 75.0%
GCGGCGCGTGGAGGTCGTAC+GGG + chr1.4:26948297-26948316 MS.gene053373:CDS 75.0%
GGAAGAGTGGCGGCGCGTGG+AGG + chr1.4:26948288-26948307 MS.gene053373:CDS 75.0%
GGAGGAAGAGTGGCGGCGCG+TGG + chr1.4:26948285-26948304 MS.gene053373:CDS 75.0%
GGCGGCGCGTGGAGGTCGTA+CGG + chr1.4:26948296-26948315 MS.gene053373:CDS 75.0%
GGTCGTACGGGCGGTAGGGC+AGG + chr1.4:26948309-26948328 MS.gene053373:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 26946813 26949909 26946813 ID=MS.gene053373
chr1.4 mRNA 26946813 26949909 26946813 ID=MS.gene053373.t1;Parent=MS.gene053373
chr1.4 exon 26946813 26947105 26946813 ID=MS.gene053373.t1.exon1;Parent=MS.gene053373.t1
chr1.4 CDS 26946813 26947105 26946813 ID=cds.MS.gene053373.t1;Parent=MS.gene053373.t1
chr1.4 exon 26947534 26949151 26947534 ID=MS.gene053373.t1.exon2;Parent=MS.gene053373.t1
chr1.4 CDS 26947534 26949151 26947534 ID=cds.MS.gene053373.t1;Parent=MS.gene053373.t1
chr1.4 exon 26949898 26949909 26949898 ID=MS.gene053373.t1.exon3;Parent=MS.gene053373.t1
chr1.4 CDS 26949898 26949909 26949898 ID=cds.MS.gene053373.t1;Parent=MS.gene053373.t1
Gene Sequence

>MS.gene053373

ATGGGTCAAGGAGAATCAACTTGGTCCATGAGGAAGTTTTATTTACGAAGTGTATTGTGTGTGTGGATCTTTAGCTTTCATGATTGGATTCTAAAGGACTGGAGACAGGAAGAGGTCAACACAGAGTTTCCTTTTCTGAAGATATTCCAGAATCAATGTAAGGAGCAAATGTTAATGGGGTTGAATTTTGTGGCTGACTTTGAAGATCAGGAAGACAACAAAATCTTTTCTTGTGGGATATGTGGCTCAAAGGGATCTGGAATCATGATGGGAGATCCGGGTATAGCGTCTGGGTCAATTCGGATAAATTATTTGTGGAACCTTCTGATAGTAGTTCTTTATCTCATTTATGGAAGGATACTGCAAGATCAGATTCAGAATGAAGTCAACCAAAAAATCCCTCTTTGGTGTGGTACGTACATGTTATTTAAGGAGTGTAGATATTGTTATGCAGGATTTGTTTTTAATAATCAAACCAAAGGACATATCAGAAGGATTTATTGTGGAATCTGGTCTCTGATACAGTGTAGAAGACTTTTGTTAATCTTAATGGTAATGAAGGGAAGGATTATGGATGGAGATACCTTGTACAATACTGATTGGGGAAACATAGTATTTAAAGGGAGTATGGAGGAGGCTTTTAGTCATCGTTTCCAACTCATGCAACCTAATTATATAATTCTCCTGATATTTGTGTCTGTCTGAATTTTGTTACTAACAGTATGGAAAATTTCAATGTCAATCTCAATGGTTCACCAAATGGATCCTCAACTGGGTCCTCTGAAATATCACATGAAGCACTGCTTGAACTCTGTGTTGTAGGCACAGTGCTCACTGACAAGCCTATCTGCTTCCAGTTCATGGAGGAAAGATTACCATCAATTTGGCGACCTGGTCAGGGGGTTACTATCACTCAAGCTGGCGAGAACCGGTTCCATTTTCAGTTCTATCATGAATGGGACTTGGAAAGAGTTCTACAAAACGGTCTTTGGACTTTTGATGGATTTTTGCTGGTCTTTAAGAAGCTAGAGATAGGCGAGGCTATCTCTGAGGTGGTCTTCAATGAAGTTGAAGTCTGGGCTCAGGTTTTTAATCTTCCCCATGGTTACATGAACGAGTATGTTGGTATGCTCATGGGGTGTCATATTGGCAGGTTTGTTCATTTTGATGAAAGCAATTTTTATGGTCCTTGGCGAATGTATATGAGGATACGGGTGGCTCTCAACATTGCTGAACCGTTGAAGCGAAGCATGGTGTTCGAGAAAGAGGATGGTACGGCTGTTCATGTCTCCTTCAAATACGAAAGGTTGGGAGTATTTTGCTACATCTGTGGCATAATGGGACACACCGATGCTTTCTGCCCAAGGAGACTTGAACCAGGTTATGTTGATGGAACTAGAGGATGGGGTCATTTTCTGAATGCTGGGGGTCGCAATGTTGGCGGTAATGTTACAGTGAACAAGTGGCTTAGAGGAGGAAGAGTGGCGGCGCGTGGAGGTCGTACGGGCGGTAGGGCAGGTTCTGATGGCATTAATGATCCTCAGGAACATCACAATAATGTTGTTGTTATGGCGCAATCAAGTGAGCATGCTTTGTTTGAGCGTGTCCGAATTTTGCGCGGAGGAGGATTTACTTTTCACAGAATGGTTACTAATATCATTGGCCATAATGGAGGAGGTGAAGGACAGTGGGTTCCTTTTGAATTAACTGCTACTAACATAGCTAATCAAATAACTATTATGCAGTTAGTCAATGGTATGGGAGTCCCAAATACTAGGAGCAACAATAGCAACAATTCAGGCGTGACAGTTACTGCGGGAGGAATAATAGCTGGAAGTCAACAAGGAGCAGCTGTTCTGACAGAGAATGAGTTGCAGCAGATCCAAGGCTTTGAGGGGACCCAAATGCTGAATGGGTGCAATCAAGAGACAGGGCAGATTCTAAGTATTTGTAGAGCAGATTTTAATAATAATAACATGATGGGTGAGACTTCAGAGGTGGGACGTGTGGCTTGTGCTAAAAAGAAAGATAAAACTCTGCCTATAAGGCCTATGGTGCAGGGTCCACTTGTTATTAGAGAAAGAGGTGTTGATGCTATTACTGACAAACCAAAGGAACTGCCAAGTAATGACAAAGGTAAGGGGAAAATGGAAGATGGTCCAGCTACAAAAATGAAGAAAAGAACAAGGTCTAATGTTGTGCAGGTTGCTAGTAACAATGTTGGAGGAGCAGCTGAACAAGGTTCTGTGCGTATGAATATTGATACCGGGAATGAAGGTGCTGGTGTGGGAAGCAATTCTGCTTCTGTTCATAACAATCCTTTATTTTCTGAAAATGTTGTAATGGCGGAGGATGAGAATCAGCCCCGCCAAGAGCCATGAAAATGATTAGTTGGAATTGTAGAGGTTTAGGTAGCCCTCGTACAATTCCTAGTTTAAAATACCTCATCCAAGTTTATAAACCGGATGTCCTCTTTCTTTGTGAGACTATATCTAATGCTAATAAAACGGAGGAATTAAAATATGTGCTGGATTTTGATTGTTGTTTTACTGTTGATCGCCAAGGTCGGAGTGGTGGTCTTGTTCTTTATTGGAAGTCATCTACTAAATGTTCAATATCAAGTTATTCAAATAATCACATTGATTTGGAAGTTATAGATGATAACAAAGGAAAGTGGCGAGCTACCGGTTACTATGGTTTTCCATCACATGGGAGGCAGAGAGATGCATGGAACTTTCTTAGGCAGCTTGCAAACTCATCAAATTTACCTTGGTGCATCCTTGGTGACTTTAATGATATACTTTCGCCTAATGAAAAGAAAGGAAAAAAATGAAAGAGCGAATTGGTTAATAAATGGTTTTCGTAATGCAGTGACCGATGCGGGTTTATCAGATGTTCACACTGAAGGTTATTTGTATACTTGGTTCAAATGTCTTGGAACTAGCCGAGCTGTAGAAGAGAGACTTGATCGCGCCCTTGCAACAGATGCATGGCAAAGACAATTTCCAGATGCAGTGTTGGAAAATTTACCAGCACCTTCCTCTGATCACTATCCAATCATGTTACTTTGTGAACCGGGTCCGAGGCAGAAACGTAA
Protein sequence

>MS.gene053373.t1

MGQGESTWSMRKFYLRSVLCVWIFSFHDWILKDWRQEEVNTEFPFLKIFQNQCKEQMLMGLNFVADFEDQEDNKIFSCGICGSKGSGIMMGDPGIASGMENFNVNLNGSPNGSSTGSSEISHEALLELCVVGTVLTDKPICFQFMEERLPSIWRPGQGVTITQAGENRFHFQFYHEWDLERVLQNGLWTFDGFLLVFKKLEIGEAISEVVFNEVEVWAQVFNLPHGYMNEYVGMLMGCHIGRFVHFDESNFYGPWRMYMRIRVALNIAEPLKRSMVFEKEDGTAVHVSFKYERLGVFCYICGIMGHTDAFCPRRLEPGYVDGTRGWGHFLNAGGRNVGGNVTVNKWLRGGRVAARGGRTGGRAGSDGINDPQEHHNNVVVMAQSSEHALFERVRILRGGGFTFHRMVTNIIGHNGGGEGQWVPFELTATNIANQITIMQLVNGMGVPNTRSNNSNNSGVTVTAGGIIAGSQQGAAVLTENELQQIQGFEGTQMLNGCNQETGQILSICRADFNNNNMMGETSEVGRVACAKKKDKTLPIRPMVQGPLVIRERGVDAITDKPKELPSNDKGKGKMEDGPATKMKKRTRSNVVQVASNNVGGAAEQGSVRMNIDTGNEGAGVGSNSASVHNNPLFSENVAET