Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010890.t1 | XP_024630605.1 | 61.2 | 273 | 83 | 4 | 2 | 261 | 48 | 310 | 5.20E-85 | 325.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010890.t1 | A0A392MNY6 | 41.4 | 203 | 100 | 3 | 1 | 185 | 161 | 362 | 2.5e-41 | 179.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010890.t1 | MTR_4g020630 | 55.118 | 127 | 57 | 0 | 323 | 449 | 165 | 291 | 1.42e-42 | 157 |
| MS.gene010890.t1 | MTR_8g463110 | 59.350 | 123 | 50 | 0 | 325 | 447 | 231 | 353 | 1.49e-42 | 159 |
| MS.gene010890.t1 | MTR_3g053920 | 35.833 | 240 | 97 | 5 | 1 | 239 | 83 | 266 | 3.08e-36 | 135 |
| MS.gene010890.t1 | MTR_7g063500 | 56.977 | 86 | 37 | 0 | 354 | 439 | 38 | 123 | 8.28e-31 | 115 |
| MS.gene010890.t1 | MTR_5g069440 | 46.957 | 115 | 57 | 2 | 336 | 449 | 33 | 144 | 2.27e-25 | 102 |
| MS.gene010890.t1 | MTR_6g034215 | 52.222 | 90 | 43 | 0 | 325 | 414 | 235 | 324 | 6.52e-24 | 102 |
| MS.gene010890.t1 | MTR_7g056813 | 53.488 | 86 | 38 | 1 | 354 | 439 | 8 | 91 | 3.11e-22 | 98.2 |
| MS.gene010890.t1 | MTR_3g044860 | 71.930 | 57 | 16 | 0 | 353 | 409 | 125 | 181 | 3.37e-19 | 88.2 |
| MS.gene010890.t1 | MTR_2g063055 | 33.036 | 112 | 75 | 0 | 332 | 443 | 68 | 179 | 2.02e-16 | 77.4 |
| MS.gene010890.t1 | MTR_7g015270 | 71.429 | 49 | 9 | 1 | 399 | 447 | 94 | 137 | 1.43e-14 | 73.6 |
| MS.gene010890.t1 | MTR_4g103530 | 47.692 | 65 | 22 | 1 | 1 | 53 | 29 | 93 | 8.75e-13 | 67.4 |
| MS.gene010890.t1 | MTR_2g061500 | 54.545 | 44 | 20 | 0 | 1 | 44 | 83 | 126 | 3.47e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 100 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGGTTCATAATGCTAATT+TGG | 0.150094 | 7.2:-53320404 | MS.gene010890:CDS |
| TCCTCATGCATTCCTATTGC+TGG | 0.230271 | 7.2:-53321549 | MS.gene010890:CDS |
| ACTTCTGACATGTCTAATTT+AGG | 0.242580 | 7.2:-53321705 | MS.gene010890:CDS |
| CCTGTTTGTGGCACAACATT+TGG | 0.246572 | 7.2:+53321780 | None:intergenic |
| TGCCACAAAACATGGAATTT+TGG | 0.252107 | 7.2:-53321649 | MS.gene010890:CDS |
| AGAAGTCGCTTTACCATTCT+TGG | 0.264082 | 7.2:+53321605 | None:intergenic |
| TTGTGGCACTTACCTCATTA+TGG | 0.265699 | 7.2:+53321664 | None:intergenic |
| CTTGATTGTCACATAGTTTC+CGG | 0.274077 | 7.2:+53321989 | None:intergenic |
| GAACTAACTTCTTCATTATT+AGG | 0.288586 | 7.2:+53321438 | None:intergenic |
| GGCTCTTTGTGCGGCTAATA+TGG | 0.304987 | 7.2:-53320368 | MS.gene010890:CDS |
| GTCCTAGTGTTCATCGCTTT+GGG | 0.312155 | 7.2:-53321839 | MS.gene010890:CDS |
| CGTCCTAGTGTTCATCGCTT+TGG | 0.321972 | 7.2:-53321840 | MS.gene010890:CDS |
| GCGTGAAAACCCACTGGTAT+AGG | 0.340240 | 7.2:-53320174 | MS.gene010890:CDS |
| GAAGAAAAGGAAGCGTATAT+TGG | 0.343656 | 7.2:-53321409 | MS.gene010890:CDS |
| CAAGTGATCGGCCAGTTTCT+TGG | 0.344978 | 7.2:-53322125 | MS.gene010890:CDS |
| CTTTCATTTCTCCAAGAAAC+TGG | 0.365674 | 7.2:+53322114 | None:intergenic |
| AACACACAACTTCATCTTGA+TGG | 0.373076 | 7.2:+53320251 | None:intergenic |
| GCGGCCACCCTTAGCATAAC+AGG | 0.375010 | 7.2:-53321489 | MS.gene010890:CDS |
| TGTGGCACAACATTTGGAAT+AGG | 0.375057 | 7.2:+53321786 | None:intergenic |
| TAATTTGGTAATTCTGAAAC+TGG | 0.380579 | 7.2:-53320389 | MS.gene010890:CDS |
| CGTGAAAACCCACTGGTATA+GGG | 0.383892 | 7.2:-53320173 | MS.gene010890:CDS |
| AGGCTCTTGATGATGGTCTA+TGG | 0.405717 | 7.2:-53322282 | MS.gene010890:CDS |
| CAAGTTTAAGTATGAAAGGC+TGG | 0.413998 | 7.2:-53321970 | MS.gene010890:CDS |
| CATCAGAATCTAACTCAAAC+AGG | 0.417926 | 7.2:+53321892 | None:intergenic |
| CCAAATGTTGTGCCACAAAC+AGG | 0.418467 | 7.2:-53321780 | MS.gene010890:CDS |
| AAAAGTTGCGACCCAGCAAT+AGG | 0.420128 | 7.2:+53321537 | None:intergenic |
| CTGCTGTTACCTCCTGTTTG+TGG | 0.420166 | 7.2:+53321768 | None:intergenic |
| TAGGACACACCTTGCCAGTA+TGG | 0.420524 | 7.2:+53321916 | None:intergenic |
| ACATCTCTTGAAGACAGTTC+AGG | 0.431086 | 7.2:-53320085 | MS.gene010890:intron |
| AAAGAAAACTCTGTATCATT+CGG | 0.452366 | 7.2:+53321360 | None:intergenic |
| TTCAAGAGATGTAATCTGAT+TGG | 0.453377 | 7.2:+53320096 | None:intergenic |
| ATGTTGCGCGGGACAGCACC+TGG | 0.458419 | 7.2:+53322220 | None:intergenic |
| GCATTCGGAACCAGGTTTCA+AGG | 0.458589 | 7.2:-53320446 | MS.gene010890:CDS |
| TTTGAGTTAGATTCTGATGA+TGG | 0.461818 | 7.2:-53321888 | MS.gene010890:CDS |
| GGACTGCTGCAACAATCAAA+TGG | 0.467113 | 7.2:-53321818 | MS.gene010890:CDS |
| ACTAGTGACTGATGCTTGGC+AGG | 0.470521 | 7.2:-53320422 | MS.gene010890:CDS |
| GCGGGAATACCTAACACAAT+AGG | 0.474429 | 7.2:+53321510 | None:intergenic |
| TGTCTCAAGATGATGCATAT+TGG | 0.478455 | 7.2:-53320204 | MS.gene010890:CDS |
| TTAGTTCCGATTTGAAGAAA+AGG | 0.488813 | 7.2:-53321422 | MS.gene010890:CDS |
| AACTTCTTCATTATTAGGCT+CGG | 0.490013 | 7.2:+53321443 | None:intergenic |
| GAATCTAACTCAAACAGGTT+AGG | 0.494572 | 7.2:+53321897 | None:intergenic |
| TGTGGTCTCCTCGACCATAC+TGG | 0.495052 | 7.2:-53321930 | MS.gene010890:CDS |
| CTTCAACACCTGTTATGCTA+AGG | 0.496554 | 7.2:+53321481 | None:intergenic |
| TGGTGTCTGTGAGTGGGGTG+TGG | 0.502793 | 7.2:-53321868 | MS.gene010890:CDS |
| TGGCAAATTCGCTCTAATAC+CGG | 0.505045 | 7.2:-53322008 | MS.gene010890:CDS |
| TGTTATGCTAAGGGTGGCCG+CGG | 0.509274 | 7.2:+53321491 | None:intergenic |
| TGATAAATTTCATATTGTCA+TGG | 0.511925 | 7.2:-53322254 | MS.gene010890:CDS |
| AATGCATAGCATTCGGAACC+AGG | 0.514127 | 7.2:-53320454 | MS.gene010890:intron |
| GCTTTCAGTAGAAATGTTTG+TGG | 0.514621 | 7.2:+53321728 | None:intergenic |
| TGTCCCGCGCAACATCAGTT+TGG | 0.517232 | 7.2:-53322212 | MS.gene010890:CDS |
| TGATGATGGTGTCTGTGAGT+GGG | 0.520019 | 7.2:-53321874 | MS.gene010890:CDS |
| ATTCTTTCACGCTTCAGCCA+CGG | 0.522579 | 7.2:-53320131 | MS.gene010890:CDS |
| GTTGCTAAGGCTCTTGATGA+TGG | 0.523174 | 7.2:-53322289 | MS.gene010890:CDS |
| CCTCATGCATTCCTATTGCT+GGG | 0.526767 | 7.2:-53321548 | MS.gene010890:CDS |
| CCACAAAATGGATGTTGCTA+AGG | 0.529999 | 7.2:-53322302 | None:intergenic |
| CTGATGATGGTGTCTGTGAG+TGG | 0.531578 | 7.2:-53321875 | MS.gene010890:CDS |
| TTTGGATCATCTTGATCTGT+GGG | 0.531829 | 7.2:-53322194 | MS.gene010890:intron |
| CAATCAAGTTTAAGTATGAA+AGG | 0.532262 | 7.2:-53321974 | MS.gene010890:CDS |
| AGGAACTAGTGACTGATGCT+TGG | 0.534609 | 7.2:-53320426 | MS.gene010890:CDS |
| TTCATTATTAGGCTCGGCAA+AGG | 0.542401 | 7.2:+53321449 | None:intergenic |
| GAGGTAAGTGCCACAAAACA+TGG | 0.543172 | 7.2:-53321657 | MS.gene010890:CDS |
| GTCACTAGTTCCTTGAAACC+TGG | 0.548057 | 7.2:+53320436 | None:intergenic |
| CAAAGGGTGGGACAAGTGAT+CGG | 0.553035 | 7.2:-53322137 | MS.gene010890:CDS |
| GCATTGTAACAAGCTTAAGA+TGG | 0.555985 | 7.2:-53320329 | MS.gene010890:CDS |
| GTCATGGAACGAATTGCTCC+AGG | 0.558491 | 7.2:-53322238 | MS.gene010890:CDS |
| GTTTGGATCATCTTGATCTG+TGG | 0.560002 | 7.2:-53322195 | MS.gene010890:CDS |
| GTGCGGCTAATATGGTGGCT+TGG | 0.563034 | 7.2:-53320360 | MS.gene010890:CDS |
| TGGTTTCATCCAGCAAAGGG+TGG | 0.567528 | 7.2:-53322150 | MS.gene010890:intron |
| TTCAACACCTGTTATGCTAA+GGG | 0.569952 | 7.2:+53321482 | None:intergenic |
| AACATCCGTTCGAATAGCAC+AGG | 0.570206 | 7.2:-53320277 | MS.gene010890:CDS |
| GATCCAAACTGATGTTGCGC+GGG | 0.575650 | 7.2:+53322209 | None:intergenic |
| ACATGTCTAATTTAGGTGGT+CGG | 0.576173 | 7.2:-53321698 | MS.gene010890:CDS |
| TCTGAAACTGGCTCTTTGTG+CGG | 0.579918 | 7.2:-53320377 | MS.gene010890:CDS |
| AGATGGATATTGAAGAGTGT+CGG | 0.581229 | 7.2:-53320312 | MS.gene010890:CDS |
| GGTTTCATCCAGCAAAGGGT+GGG | 0.583245 | 7.2:-53322149 | MS.gene010890:intron |
| AAGGAAAAGCATGATTAATG+TGG | 0.586179 | 7.2:+53321577 | None:intergenic |
| AAGTTTAAGTATGAAAGGCT+GGG | 0.587769 | 7.2:-53321969 | MS.gene010890:CDS |
| GTCCCAAAGCGATGAACACT+AGG | 0.592722 | 7.2:+53321837 | None:intergenic |
| GATGATGGTGTCTGTGAGTG+GGG | 0.604381 | 7.2:-53321873 | MS.gene010890:CDS |
| ACTGGTATAGGGATGGTGAT+CGG | 0.609754 | 7.2:-53320162 | MS.gene010890:CDS |
| GCTCACTGTTGTCCATAATG+AGG | 0.612656 | 7.2:-53321676 | MS.gene010890:CDS |
| GGAATGCATGAGGATGAAGA+AGG | 0.617878 | 7.2:+53321558 | None:intergenic |
| TCTTTGTGCGGCTAATATGG+TGG | 0.618881 | 7.2:-53320365 | MS.gene010890:CDS |
| GGTCTCCTGTGCTATTCGAA+CGG | 0.619367 | 7.2:+53320272 | None:intergenic |
| ACACCTTGCCAGTATGGTCG+AGG | 0.622302 | 7.2:+53321922 | None:intergenic |
| TCTGACATGTCTAATTTAGG+TGG | 0.623949 | 7.2:-53321702 | MS.gene010890:CDS |
| GAAAACTCTGTATCATTCGG+AGG | 0.627133 | 7.2:+53321363 | None:intergenic |
| TCTCCTCGACCATACTGGCA+AGG | 0.628043 | 7.2:-53321925 | MS.gene010890:CDS |
| TGATCCAAACTGATGTTGCG+CGG | 0.633705 | 7.2:+53322208 | None:intergenic |
| ATCACCATCCCTATACCAGT+GGG | 0.638879 | 7.2:+53320165 | None:intergenic |
| GTTATGCTAAGGGTGGCCGC+GGG | 0.643893 | 7.2:+53321492 | None:intergenic |
| AAAACCCACTGGTATAGGGA+TGG | 0.646708 | 7.2:-53320169 | MS.gene010890:CDS |
| GATCACCATCCCTATACCAG+TGG | 0.647975 | 7.2:+53320164 | None:intergenic |
| GTCAACGCGTGAAAACCCAC+TGG | 0.651633 | 7.2:-53320180 | MS.gene010890:CDS |
| AACACCTGTTATGCTAAGGG+TGG | 0.654874 | 7.2:+53321485 | None:intergenic |
| CCCAGCAATAGGAATGCATG+AGG | 0.662713 | 7.2:+53321548 | None:intergenic |
| CAAACAGGAGGTAACAGCAG+TGG | 0.663709 | 7.2:-53321765 | MS.gene010890:CDS |
| TTTAAGTATGAAAGGCTGGG+AGG | 0.666245 | 7.2:-53321966 | MS.gene010890:CDS |
| AATGTTGTGCCACAAACAGG+AGG | 0.685102 | 7.2:-53321777 | MS.gene010890:CDS |
| TATTGTGTTAGGTATTCCCG+CGG | 0.702010 | 7.2:-53321508 | MS.gene010890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGCTAAAAATTATTTTT+CGG | - | chr7.2:53322276-53322295 | MS.gene010890:CDS | 10.0% |
| !! | GTATGAAAATCAAAATGTAT+CGG | - | chr7.2:53321058-53321077 | MS.gene010890:intron | 20.0% |
| !! | TACAATATTACAATTAAACG+AGG | + | chr7.2:53321335-53321354 | None:intergenic | 20.0% |
| !! | TGATAAATTTCATATTGTCA+TGG | - | chr7.2:53320051-53320070 | MS.gene010890:intron | 20.0% |
| !! | TGTAAATTGATTAGAGTTAA+CGG | + | chr7.2:53321477-53321496 | None:intergenic | 20.0% |
| !!! | ACATTTTGATTTTCATACAA+AGG | + | chr7.2:53321056-53321075 | None:intergenic | 20.0% |
| ! | AAAGAAAACTCTGTATCATT+CGG | + | chr7.2:53320948-53320967 | None:intergenic | 25.0% |
| ! | CAATAACATCAACAAAAATG+TGG | + | chr7.2:53321372-53321391 | None:intergenic | 25.0% |
| ! | CAATCAAGTTTAAGTATGAA+AGG | - | chr7.2:53320331-53320350 | MS.gene010890:CDS | 25.0% |
| ! | GAACTAACTTCTTCATTATT+AGG | + | chr7.2:53320870-53320889 | None:intergenic | 25.0% |
| ! | GAATATTTACGTTATTAGCT+TGG | - | chr7.2:53321244-53321263 | MS.gene010890:intron | 25.0% |
| ! | GTTAACTCTAATCAATTTAC+AGG | - | chr7.2:53321476-53321495 | MS.gene010890:CDS | 25.0% |
| ! | TTATGAAAATGCATAGCATT+CGG | - | chr7.2:53321844-53321863 | MS.gene010890:CDS | 25.0% |
| ! | TTTGTTGATGTTATTGATAC+TGG | - | chr7.2:53321376-53321395 | MS.gene010890:CDS | 25.0% |
| !! | ATGGTTTAATCTTTTTCCTA+CGG | - | chr7.2:53321721-53321740 | MS.gene010890:CDS | 25.0% |
| !!! | TAATTTGGTAATTCTGAAAC+TGG | - | chr7.2:53321916-53321935 | MS.gene010890:CDS | 25.0% |
| !!! | TCACTTTAGAATAATAAGTC+CGG | + | chr7.2:53321199-53321218 | None:intergenic | 25.0% |
| !!! | TGGTGATTTTAATGATATCA+TGG | - | chr7.2:53321514-53321533 | MS.gene010890:CDS | 25.0% |
| AAACTTATGAACCACGTAAA+TGG | + | chr7.2:53321647-53321666 | None:intergenic | 30.0% | |
| AAATTGATTAGAGTTAACGG+AGG | + | chr7.2:53321474-53321493 | None:intergenic | 30.0% | |
| AACGAAAACTACGTTTATGA+AGG | + | chr7.2:53321826-53321845 | None:intergenic | 30.0% | |
| AACTTATGAACCACGTAAAT+GGG | + | chr7.2:53321646-53321665 | None:intergenic | 30.0% | |
| AACTTCTTCATTATTAGGCT+CGG | + | chr7.2:53320865-53320884 | None:intergenic | 30.0% | |
| AAGTTTAAGTATGAAAGGCT+GGG | - | chr7.2:53320336-53320355 | MS.gene010890:CDS | 30.0% | |
| ACTTCTGACATGTCTAATTT+AGG | - | chr7.2:53320600-53320619 | MS.gene010890:intron | 30.0% | |
| ATTTACGTGGTTCATAAGTT+TGG | - | chr7.2:53321646-53321665 | MS.gene010890:CDS | 30.0% | |
| CAGACTTAAAATACCTAGTT+CGG | - | chr7.2:53321164-53321183 | MS.gene010890:intron | 30.0% | |
| GACTTCTATTCAAGAGAATA+GGG | + | chr7.2:53321787-53321806 | None:intergenic | 30.0% | |
| TGAAAATCAAAATGTATCGG+CGG | - | chr7.2:53321061-53321080 | MS.gene010890:intron | 30.0% | |
| TTCAAGAGATGTAATCTGAT+TGG | + | chr7.2:53322212-53322231 | None:intergenic | 30.0% | |
| TTGTAGGTGAAAATGTTAGT+GGG | - | chr7.2:53320997-53321016 | MS.gene010890:intron | 30.0% | |
| TTTACGTGGTTCATAAGTTT+GGG | - | chr7.2:53321647-53321666 | MS.gene010890:CDS | 30.0% | |
| TTTGTAGGTGAAAATGTTAG+TGG | - | chr7.2:53320996-53321015 | MS.gene010890:intron | 30.0% | |
| ! | AAATCTGTTTTGTCCAAGAA+TGG | - | chr7.2:53320687-53320706 | MS.gene010890:intron | 30.0% |
| ! | AAGGAAAAGCATGATTAATG+TGG | + | chr7.2:53320731-53320750 | None:intergenic | 30.0% |
| ! | TTAGTTCCGATTTGAAGAAA+AGG | - | chr7.2:53320883-53320902 | MS.gene010890:intron | 30.0% |
| ! | TTTGAGTTAGATTCTGATGA+TGG | - | chr7.2:53320417-53320436 | MS.gene010890:CDS | 30.0% |
| !! | GTTAATGGGGATTATTTTGT+AGG | - | chr7.2:53320981-53321000 | MS.gene010890:intron | 30.0% |
| !!! | AATTTGCCACTGTTTTTTCA+AGG | + | chr7.2:53320286-53320305 | None:intergenic | 30.0% |
| !!! | ATTTGCCACTGTTTTTTCAA+GGG | + | chr7.2:53320285-53320304 | None:intergenic | 30.0% |
| AACAAGGTTTCTTCTAGTAC+TGG | - | chr7.2:53322244-53322263 | MS.gene010890:CDS | 35.0% | |
| AACACACAACTTCATCTTGA+TGG | + | chr7.2:53322057-53322076 | None:intergenic | 35.0% | |
| ACATGTCTAATTTAGGTGGT+CGG | - | chr7.2:53320607-53320626 | MS.gene010890:intron | 35.0% | |
| ATAGGGTAATGATCTGATGA+CGG | + | chr7.2:53321770-53321789 | None:intergenic | 35.0% | |
| ATCAACCCTTGAAAAAACAG+TGG | - | chr7.2:53320277-53320296 | MS.gene010890:CDS | 35.0% | |
| CAAGTTTAAGTATGAAAGGC+TGG | - | chr7.2:53320335-53320354 | MS.gene010890:CDS | 35.0% | |
| CATCAGAATCTAACTCAAAC+AGG | + | chr7.2:53320416-53320435 | None:intergenic | 35.0% | |
| CGGTTTATGAGAAACTTGAT+AGG | - | chr7.2:53321681-53321700 | MS.gene010890:CDS | 35.0% | |
| CGTTCGAATTGGTTAATCAA+TGG | - | chr7.2:53321566-53321585 | MS.gene010890:CDS | 35.0% | |
| CTAATCAATTTACAGGTCCA+TGG | - | chr7.2:53321483-53321502 | MS.gene010890:CDS | 35.0% | |
| CTTGATTGTCACATAGTTTC+CGG | + | chr7.2:53320319-53320338 | None:intergenic | 35.0% | |
| CTTTCATTTCTCCAAGAAAC+TGG | + | chr7.2:53320194-53320213 | None:intergenic | 35.0% | |
| GAATCTAACTCAAACAGGTT+AGG | + | chr7.2:53320411-53320430 | None:intergenic | 35.0% | |
| GATGTTATTGATACTGGTCA+TGG | - | chr7.2:53321382-53321401 | MS.gene010890:CDS | 35.0% | |
| GCAGGTTCATAATGCTAATT+TGG | - | chr7.2:53321901-53321920 | MS.gene010890:CDS | 35.0% | |
| GCATTGTAACAAGCTTAAGA+TGG | - | chr7.2:53321976-53321995 | MS.gene010890:CDS | 35.0% | |
| GCTTTCAGTAGAAATGTTTG+TGG | + | chr7.2:53320580-53320599 | None:intergenic | 35.0% | |
| GGACTTCTATTCAAGAGAAT+AGG | + | chr7.2:53321788-53321807 | None:intergenic | 35.0% | |
| GGATGTAATTGATGCGATTT+AGG | - | chr7.2:53321124-53321143 | MS.gene010890:intron | 35.0% | |
| TCTGACATGTCTAATTTAGG+TGG | - | chr7.2:53320603-53320622 | MS.gene010890:intron | 35.0% | |
| TGAAACCAAAAGGTAATCCA+TGG | + | chr7.2:53320143-53320162 | None:intergenic | 35.0% | |
| TGTAGGTGAAAATGTTAGTG+GGG | - | chr7.2:53320998-53321017 | MS.gene010890:intron | 35.0% | |
| TGTCTCAAGATGATGCATAT+TGG | - | chr7.2:53322101-53322120 | MS.gene010890:CDS | 35.0% | |
| TTCAACACCTGTTATGCTAA+GGG | + | chr7.2:53320826-53320845 | None:intergenic | 35.0% | |
| TTTGGATCATCTTGATCTGT+GGG | - | chr7.2:53320111-53320130 | MS.gene010890:CDS | 35.0% | |
| ! | ACGCTTCCTTTTCTTCAAAT+CGG | + | chr7.2:53320892-53320911 | None:intergenic | 35.0% |
| ! | AGATGGATATTGAAGAGTGT+CGG | - | chr7.2:53321993-53322012 | MS.gene010890:CDS | 35.0% |
| ! | CACAAAACATGGAATTTTGG+TGG | - | chr7.2:53320659-53320678 | MS.gene010890:intron | 35.0% |
| ! | CACCAAAATTCCATGTTTTG+TGG | + | chr7.2:53320661-53320680 | None:intergenic | 35.0% |
| ! | GAAAATCAAAATGTATCGGC+GGG | - | chr7.2:53321062-53321081 | MS.gene010890:intron | 35.0% |
| ! | GAAGAAAAGGAAGCGTATAT+TGG | - | chr7.2:53320896-53320915 | MS.gene010890:intron | 35.0% |
| ! | TGCCACAAAACATGGAATTT+TGG | - | chr7.2:53320656-53320675 | MS.gene010890:intron | 35.0% |
| !! | AATCAATGGCTTTAGACAAG+CGG | - | chr7.2:53321580-53321599 | MS.gene010890:CDS | 35.0% |
| !! | CGAACTAGGTATTTTAAGTC+TGG | + | chr7.2:53321166-53321185 | None:intergenic | 35.0% |
| !! | CTTTTCAAGCCTATTGTGTT+AGG | - | chr7.2:53320786-53320805 | MS.gene010890:intron | 35.0% |
| !! | GTAATCCATGGATTACCTTT+TGG | - | chr7.2:53320135-53320154 | MS.gene010890:CDS | 35.0% |
| !! | TGTTTTTCAGTTGATCCTAG+TGG | - | chr7.2:53321277-53321296 | MS.gene010890:intron | 35.0% |
| !!! | TTTTGGTTTCATCCAGCAAA+GGG | - | chr7.2:53320152-53320171 | MS.gene010890:CDS | 35.0% |
| AAACTACGTTTATGAAGGCG+AGG | + | chr7.2:53321821-53321840 | None:intergenic | 40.0% | |
| AAATCACCAAGAATGCACCA+TGG | + | chr7.2:53321503-53321522 | None:intergenic | 40.0% | |
| ACATCTCTTGAAGACAGTTC+AGG | - | chr7.2:53322220-53322239 | MS.gene010890:CDS | 40.0% | |
| CTTCAACACCTGTTATGCTA+AGG | + | chr7.2:53320827-53320846 | None:intergenic | 40.0% | |
| CTTTGCTGGATGAAACCAAA+AGG | + | chr7.2:53320153-53320172 | None:intergenic | 40.0% | |
| GAAAACTCTGTATCATTCGG+AGG | + | chr7.2:53320945-53320964 | None:intergenic | 40.0% | |
| GGACTCTTGCAAACAATGAA+TGG | - | chr7.2:53321702-53321721 | MS.gene010890:CDS | 40.0% | |
| GTAGGTGAAAATGTTAGTGG+GGG | - | chr7.2:53320999-53321018 | MS.gene010890:intron | 40.0% | |
| GTCAGAATCTTCGTTCGAAT+TGG | - | chr7.2:53321555-53321574 | MS.gene010890:CDS | 40.0% | |
| GTTTGGATCATCTTGATCTG+TGG | - | chr7.2:53320110-53320129 | MS.gene010890:CDS | 40.0% | |
| TAGGGTAATGATCTGATGAC+GGG | + | chr7.2:53321769-53321788 | None:intergenic | 40.0% | |
| TATTGTGTTAGGTATTCCCG+CGG | - | chr7.2:53320797-53320816 | MS.gene010890:intron | 40.0% | |
| TGAAGACAGTTCAGGTAACA+AGG | - | chr7.2:53322228-53322247 | MS.gene010890:CDS | 40.0% | |
| TGGCAAATTCGCTCTAATAC+CGG | - | chr7.2:53320297-53320316 | MS.gene010890:CDS | 40.0% | |
| TTCATTATTAGGCTCGGCAA+AGG | + | chr7.2:53320859-53320878 | None:intergenic | 40.0% | |
| TTGATACTGGTCATGGCTTA+TGG | - | chr7.2:53321389-53321408 | MS.gene010890:CDS | 40.0% | |
| TTGTGGCACTTACCTCATTA+TGG | + | chr7.2:53320644-53320663 | None:intergenic | 40.0% | |
| TTTAAGTATGAAAGGCTGGG+AGG | - | chr7.2:53320339-53320358 | MS.gene010890:CDS | 40.0% | |
| ! | AGAAGTCGCTTTACCATTCT+TGG | + | chr7.2:53320703-53320722 | None:intergenic | 40.0% |
| ! | AGAGTTTTCTTTTGCTGCTG+AGG | - | chr7.2:53320956-53320975 | MS.gene010890:intron | 40.0% |
| ! | AGTTTTCTTTTGCTGCTGAG+GGG | - | chr7.2:53320958-53320977 | MS.gene010890:intron | 40.0% |
| ! | GAGTTTTCTTTTGCTGCTGA+GGG | - | chr7.2:53320957-53320976 | MS.gene010890:intron | 40.0% |
| ! | TCTTTTTCCTACGGCTATCT+TGG | - | chr7.2:53321730-53321749 | MS.gene010890:CDS | 40.0% |
| ! | TGTGGCACAACATTTGGAAT+AGG | + | chr7.2:53320522-53320541 | None:intergenic | 40.0% |
| !! | TTTTAAGTCTGGAATTGCGC+CGG | + | chr7.2:53321155-53321174 | None:intergenic | 40.0% |
| !!! | CTTTTGGTTTCATCCAGCAA+AGG | - | chr7.2:53320151-53320170 | MS.gene010890:CDS | 40.0% |
| AAAACCCACTGGTATAGGGA+TGG | - | chr7.2:53322136-53322155 | MS.gene010890:CDS | 45.0% | |
| AAAAGTTGCGACCCAGCAAT+AGG | + | chr7.2:53320771-53320790 | None:intergenic | 45.0% | |
| AACACCTGTTATGCTAAGGG+TGG | + | chr7.2:53320823-53320842 | None:intergenic | 45.0% | |
| AACATCCGTTCGAATAGCAC+AGG | - | chr7.2:53322028-53322047 | MS.gene010890:CDS | 45.0% | |
| AATGCATAGCATTCGGAACC+AGG | - | chr7.2:53321851-53321870 | MS.gene010890:CDS | 45.0% | |
| AATGTTGTGCCACAAACAGG+AGG | - | chr7.2:53320528-53320547 | MS.gene010890:intron | 45.0% | |
| ACTGGTATAGGGATGGTGAT+CGG | - | chr7.2:53322143-53322162 | MS.gene010890:intron | 45.0% | |
| AGGAACTAGTGACTGATGCT+TGG | - | chr7.2:53321879-53321898 | MS.gene010890:CDS | 45.0% | |
| AGTTTCTCATAAACCGCTCG+AGG | + | chr7.2:53321677-53321696 | None:intergenic | 45.0% | |
| ATACTACGAGTACCCTGAAG+GGG | - | chr7.2:53321423-53321442 | MS.gene010890:CDS | 45.0% | |
| ATCACCATCCCTATACCAGT+GGG | + | chr7.2:53322143-53322162 | None:intergenic | 45.0% | |
| ATGGATGCGAGCGAGAAAAA+GGG | - | chr7.2:53321533-53321552 | MS.gene010890:CDS | 45.0% | |
| ATTCTTTCACGCTTCAGCCA+CGG | - | chr7.2:53322174-53322193 | MS.gene010890:intron | 45.0% | |
| CCAAATGTTGTGCCACAAAC+AGG | - | chr7.2:53320525-53320544 | MS.gene010890:intron | 45.0% | |
| CCTATCAGACTCATTTGACC+CGG | + | chr7.2:53321106-53321125 | None:intergenic | 45.0% | |
| CCTCATGCATTCCTATTGCT+GGG | - | chr7.2:53320757-53320776 | MS.gene010890:intron | 45.0% | |
| CCTGTTTGTGGCACAACATT+TGG | + | chr7.2:53320528-53320547 | None:intergenic | 45.0% | |
| CGTGAAAACCCACTGGTATA+GGG | - | chr7.2:53322132-53322151 | MS.gene010890:CDS | 45.0% | |
| GAGGTAAGTGCCACAAAACA+TGG | - | chr7.2:53320648-53320667 | MS.gene010890:intron | 45.0% | |
| GATACTACGAGTACCCTGAA+GGG | - | chr7.2:53321422-53321441 | MS.gene010890:CDS | 45.0% | |
| GCGGGAATACCTAACACAAT+AGG | + | chr7.2:53320798-53320817 | None:intergenic | 45.0% | |
| GCTCACTGTTGTCCATAATG+AGG | - | chr7.2:53320629-53320648 | MS.gene010890:intron | 45.0% | |
| GGAATGCATGAGGATGAAGA+AGG | + | chr7.2:53320750-53320769 | None:intergenic | 45.0% | |
| GGACTGCTGCAACAATCAAA+TGG | - | chr7.2:53320487-53320506 | MS.gene010890:intron | 45.0% | |
| GTAAATGGGTACCCATCCAT+CGG | + | chr7.2:53321632-53321651 | None:intergenic | 45.0% | |
| GTCACTAGTTCCTTGAAACC+TGG | + | chr7.2:53321872-53321891 | None:intergenic | 45.0% | |
| GTCCTAGTGTTCATCGCTTT+GGG | - | chr7.2:53320466-53320485 | MS.gene010890:intron | 45.0% | |
| GTTGCTAAGGCTCTTGATGA+TGG | - | chr7.2:53320016-53320035 | MS.gene010890:intron | 45.0% | |
| TAAATGGGTACCCATCCATC+GGG | + | chr7.2:53321631-53321650 | None:intergenic | 45.0% | |
| TCAGTTGATCCTAGTGGTAG+AGG | - | chr7.2:53321283-53321302 | MS.gene010890:intron | 45.0% | |
| TCCTCATGCATTCCTATTGC+TGG | - | chr7.2:53320756-53320775 | MS.gene010890:intron | 45.0% | |
| TCTTTGTGCGGCTAATATGG+TGG | - | chr7.2:53321940-53321959 | MS.gene010890:CDS | 45.0% | |
| TGATCCAAACTGATGTTGCG+CGG | + | chr7.2:53320100-53320119 | None:intergenic | 45.0% | |
| TGATCTGTGGGTGTAATCCA+TGG | - | chr7.2:53320123-53320142 | MS.gene010890:CDS | 45.0% | |
| TGATGCGATTTAGGTAGTCC+CGG | - | chr7.2:53321133-53321152 | MS.gene010890:intron | 45.0% | |
| ! | AGGGTAATGATCTGATGACG+GGG | + | chr7.2:53321768-53321787 | None:intergenic | 45.0% |
| ! | GTTTTCTTTTGCTGCTGAGG+GGG | - | chr7.2:53320959-53320978 | MS.gene010890:intron | 45.0% |
| ! | TCTGAAACTGGCTCTTTGTG+CGG | - | chr7.2:53321928-53321947 | MS.gene010890:CDS | 45.0% |
| ! | TTCAGGGTACTCGTAGTATC+CGG | + | chr7.2:53321422-53321441 | None:intergenic | 45.0% |
| ! | TTTAAGTCTGGAATTGCGCC+GGG | + | chr7.2:53321154-53321173 | None:intergenic | 45.0% |
| !! | AGGCTCTTGATGATGGTCTA+TGG | - | chr7.2:53320023-53320042 | MS.gene010890:intron | 45.0% |
| !! | TGATGATGGTGTCTGTGAGT+GGG | - | chr7.2:53320431-53320450 | MS.gene010890:CDS | 45.0% |
| !!! | GAGGCGGTCTTGCTTTATTT+TGG | - | chr7.2:53321305-53321324 | MS.gene010890:intron | 45.0% |
| !!! | GGAGGTTTTTTCTATCGGTG+TGG | - | chr7.2:53320357-53320376 | MS.gene010890:CDS | 45.0% |
| !!! | GGCTGGGAGGTTTTTTCTAT+CGG | - | chr7.2:53320352-53320371 | MS.gene010890:CDS | 45.0% |
| AAGTTTGGGTACTCCTCGAG+CGG | - | chr7.2:53321661-53321680 | MS.gene010890:CDS | 50.0% | |
| ACAGGTCCATGGTGCATTCT+TGG | - | chr7.2:53321494-53321513 | MS.gene010890:CDS | 50.0% | |
| ACTAGTGACTGATGCTTGGC+AGG | - | chr7.2:53321883-53321902 | MS.gene010890:CDS | 50.0% | |
| AGACAAGCGGTTCTTGAGTC+AGG | - | chr7.2:53321593-53321612 | MS.gene010890:CDS | 50.0% | |
| AGGTTCTCCAAGATAGCCGT+AGG | + | chr7.2:53321740-53321759 | None:intergenic | 50.0% | |
| CAAACAGGAGGTAACAGCAG+TGG | - | chr7.2:53320540-53320559 | MS.gene010890:intron | 50.0% | |
| CAAAGGGTGGGACAAGTGAT+CGG | - | chr7.2:53320168-53320187 | MS.gene010890:CDS | 50.0% | |
| CAAGTGATCGGCCAGTTTCT+TGG | - | chr7.2:53320180-53320199 | MS.gene010890:CDS | 50.0% | |
| CATGGATGCGAGCGAGAAAA+AGG | - | chr7.2:53321532-53321551 | MS.gene010890:CDS | 50.0% | |
| CATGGCTTATGGAGACTCAC+CGG | - | chr7.2:53321400-53321419 | MS.gene010890:CDS | 50.0% | |
| CCCAGCAATAGGAATGCATG+AGG | + | chr7.2:53320760-53320779 | None:intergenic | 50.0% | |
| CCGGGTCAAATGAGTCTGAT+AGG | - | chr7.2:53321103-53321122 | MS.gene010890:intron | 50.0% | |
| CCTAGTTCGGCACTTCAATC+CGG | - | chr7.2:53321177-53321196 | MS.gene010890:intron | 50.0% | |
| CGTCCTAGTGTTCATCGCTT+TGG | - | chr7.2:53320465-53320484 | MS.gene010890:intron | 50.0% | |
| CTGCTGTTACCTCCTGTTTG+TGG | + | chr7.2:53320540-53320559 | None:intergenic | 50.0% | |
| GATCACCATCCCTATACCAG+TGG | + | chr7.2:53322144-53322163 | None:intergenic | 50.0% | |
| GATCCAAACTGATGTTGCGC+GGG | + | chr7.2:53320099-53320118 | None:intergenic | 50.0% | |
| GCATTCGGAACCAGGTTTCA+AGG | - | chr7.2:53321859-53321878 | MS.gene010890:CDS | 50.0% | |
| GCGTGAAAACCCACTGGTAT+AGG | - | chr7.2:53322131-53322150 | MS.gene010890:CDS | 50.0% | |
| GGATACTACGAGTACCCTGA+AGG | - | chr7.2:53321421-53321440 | MS.gene010890:CDS | 50.0% | |
| GGCTCTTTGTGCGGCTAATA+TGG | - | chr7.2:53321937-53321956 | MS.gene010890:CDS | 50.0% | |
| GGTTCTTGAGTCAGGCTTAG+TGG | - | chr7.2:53321601-53321620 | MS.gene010890:CDS | 50.0% | |
| GGTTTCATCCAGCAAAGGGT+GGG | - | chr7.2:53320156-53320175 | MS.gene010890:CDS | 50.0% | |
| GTCATGGAACGAATTGCTCC+AGG | - | chr7.2:53320067-53320086 | MS.gene010890:intron | 50.0% | |
| GTCCCAAAGCGATGAACACT+AGG | + | chr7.2:53320471-53320490 | None:intergenic | 50.0% | |
| GTTGATCCTAGTGGTAGAGG+AGG | - | chr7.2:53321286-53321305 | MS.gene010890:intron | 50.0% | |
| TACTACGAGTACCCTGAAGG+GGG | - | chr7.2:53321424-53321443 | MS.gene010890:CDS | 50.0% | |
| TAGGACACACCTTGCCAGTA+TGG | + | chr7.2:53320392-53320411 | None:intergenic | 50.0% | |
| TCAGACTCATTTGACCCGGT+AGG | + | chr7.2:53321102-53321121 | None:intergenic | 50.0% | |
| TGGATGGGTACCCATTTACG+TGG | - | chr7.2:53321633-53321652 | MS.gene010890:CDS | 50.0% | |
| TGGTTTCATCCAGCAAAGGG+TGG | - | chr7.2:53320155-53320174 | MS.gene010890:CDS | 50.0% | |
| TTCAGCCACGGCGAGAAAAA+AGG | - | chr7.2:53322186-53322205 | MS.gene010890:intron | 50.0% | |
| TTGCTGCTGAGGGGGTTAAT+GGG | - | chr7.2:53320967-53320986 | MS.gene010890:intron | 50.0% | |
| TTTGCTGCTGAGGGGGTTAA+TGG | - | chr7.2:53320966-53320985 | MS.gene010890:intron | 50.0% | |
| ! | GATGATGGTGTCTGTGAGTG+GGG | - | chr7.2:53320432-53320451 | MS.gene010890:CDS | 50.0% |
| ! | GGTCTCCTGTGCTATTCGAA+CGG | + | chr7.2:53322036-53322055 | None:intergenic | 50.0% |
| ! | TAGTGGATGTCCCGATGGAT+GGG | - | chr7.2:53321618-53321637 | MS.gene010890:CDS | 50.0% |
| ! | TTAGTGGATGTCCCGATGGA+TGG | - | chr7.2:53321617-53321636 | MS.gene010890:CDS | 50.0% |
| !! | CTGATGATGGTGTCTGTGAG+TGG | - | chr7.2:53320430-53320449 | MS.gene010890:CDS | 50.0% |
| !!! | ATTGGCCTTTTTTCTCGCCG+TGG | + | chr7.2:53322194-53322213 | None:intergenic | 50.0% |
| ACACCTTGCCAGTATGGTCG+AGG | + | chr7.2:53320386-53320405 | None:intergenic | 55.0% | |
| CTCTGATGATCAGGCCTACC+GGG | - | chr7.2:53321085-53321104 | MS.gene010890:intron | 55.0% | |
| GATCCTAGTGGTAGAGGAGG+CGG | - | chr7.2:53321289-53321308 | MS.gene010890:intron | 55.0% | |
| GCTCTGATGATCAGGCCTAC+CGG | - | chr7.2:53321084-53321103 | MS.gene010890:intron | 55.0% | |
| GGGACGTAGACGTCTTACGT+GGG | - | chr7.2:53321444-53321463 | MS.gene010890:CDS | 55.0% | |
| GTCAACGCGTGAAAACCCAC+TGG | - | chr7.2:53322125-53322144 | MS.gene010890:CDS | 55.0% | |
| GTGCGGCTAATATGGTGGCT+TGG | - | chr7.2:53321945-53321964 | MS.gene010890:CDS | 55.0% | |
| TCACTTGTCCCACCCTTTGC+TGG | + | chr7.2:53320167-53320186 | None:intergenic | 55.0% | |
| TCTCCTCGACCATACTGGCA+AGG | - | chr7.2:53320380-53320399 | MS.gene010890:CDS | 55.0% | |
| TGAAGGCGAGGTCGTTGCTA+CGG | + | chr7.2:53321809-53321828 | None:intergenic | 55.0% | |
| TGCTGCTGAGGGGGTTAATG+GGG | - | chr7.2:53320968-53320987 | MS.gene010890:intron | 55.0% | |
| TGTCCCGCGCAACATCAGTT+TGG | - | chr7.2:53320093-53320112 | MS.gene010890:CDS | 55.0% | |
| TGTGGTCTCCTCGACCATAC+TGG | - | chr7.2:53320375-53320394 | MS.gene010890:CDS | 55.0% | |
| TGTTATGCTAAGGGTGGCCG+CGG | + | chr7.2:53320817-53320836 | None:intergenic | 55.0% | |
| ! | AGGCTTAGTGGATGTCCCGA+TGG | - | chr7.2:53321613-53321632 | MS.gene010890:CDS | 55.0% |
| !! | CCGGATTGAAGTGCCGAACT+AGG | + | chr7.2:53321180-53321199 | None:intergenic | 55.0% |
| AGACCGCCTCCTCTACCACT+AGG | + | chr7.2:53321295-53321314 | None:intergenic | 60.0% | |
| AGACGTCTACGTCCCCCTTC+AGG | + | chr7.2:53321439-53321458 | None:intergenic | 60.0% | |
| GACGTCTACGTCCCCCTTCA+GGG | + | chr7.2:53321438-53321457 | None:intergenic | 60.0% | |
| GCGGCCACCCTTAGCATAAC+AGG | - | chr7.2:53320816-53320835 | MS.gene010890:intron | 60.0% | |
| GGGGACGTAGACGTCTTACG+TGG | - | chr7.2:53321443-53321462 | MS.gene010890:CDS | 60.0% | |
| GTTATGCTAAGGGTGGCCGC+GGG | + | chr7.2:53320816-53320835 | None:intergenic | 60.0% | |
| TGGTGTCTGTGAGTGGGGTG+TGG | - | chr7.2:53320437-53320456 | MS.gene010890:CDS | 60.0% | |
| ! | ATCGGCGGGCTCTGATGATC+AGG | - | chr7.2:53321076-53321095 | MS.gene010890:intron | 60.0% |
| !! | GATCTGATGACGGGGCTGCA+AGG | + | chr7.2:53321760-53321779 | None:intergenic | 60.0% |
| ATGTTGCGCGGGACAGCACC+TGG | + | chr7.2:53320088-53320107 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 53320010 | 53322317 | 53320010 | ID=MS.gene010890 |
| chr7.2 | mRNA | 53320010 | 53322317 | 53320010 | ID=MS.gene010890.t1;Parent=MS.gene010890 |
| chr7.2 | exon | 53322195 | 53322317 | 53322195 | ID=MS.gene010890.t1.exon1;Parent=MS.gene010890.t1 |
| chr7.2 | CDS | 53322195 | 53322317 | 53322195 | ID=cds.MS.gene010890.t1;Parent=MS.gene010890.t1 |
| chr7.2 | exon | 53321317 | 53322159 | 53321317 | ID=MS.gene010890.t1.exon2;Parent=MS.gene010890.t1 |
| chr7.2 | CDS | 53321317 | 53322159 | 53321317 | ID=cds.MS.gene010890.t1;Parent=MS.gene010890.t1 |
| chr7.2 | exon | 53320086 | 53320467 | 53320086 | ID=MS.gene010890.t1.exon3;Parent=MS.gene010890.t1 |
| chr7.2 | CDS | 53320086 | 53320467 | 53320086 | ID=cds.MS.gene010890.t1;Parent=MS.gene010890.t1 |
| chr7.2 | exon | 53320010 | 53320014 | 53320010 | ID=MS.gene010890.t1.exon4;Parent=MS.gene010890.t1 |
| chr7.2 | CDS | 53320010 | 53320014 | 53320010 | ID=cds.MS.gene010890.t1;Parent=MS.gene010890.t1 |
| Gene Sequence |
| Protein sequence |
