AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44083

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44083.t1 MTR_3g053920 51.899 316 90 7 99 388 1 280 2.21e-82 255
MS.gene44083.t1 MTR_4g103530 45.701 221 74 5 136 356 8 182 7.10e-53 176
MS.gene44083.t1 MTR_2g061500 67.442 129 18 1 99 203 1 129 2.36e-51 170
MS.gene44083.t1 MTR_7g011710 66.234 77 26 0 137 213 9 85 2.04e-30 115
MS.gene44083.t1 MTR_6g033215 34.884 129 82 1 146 272 165 293 1.53e-22 97.8
MS.gene44083.t1 MTR_0010s0370 40.000 105 61 1 149 251 73 177 7.62e-22 92.8
MS.gene44083.t1 MTR_0010s0350 40.000 105 61 1 149 251 73 177 7.62e-22 92.8
MS.gene44083.t1 MTR_8g463110 57.955 88 37 0 331 418 1 88 7.69e-18 86.7
MS.gene44083.t1 MTR_7g089990 36.111 108 65 2 180 283 86 193 7.47e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44083.t1 AT2G17920 26.923 182 128 3 143 321 71 250 2.47e-19 88.6
MS.gene44083.t1 AT5G36228 29.775 178 116 4 143 317 71 242 7.37e-17 82.0
MS.gene44083.t1 AT3G57587 30.282 142 95 2 151 290 80 219 3.19e-16 80.5
MS.gene44083.t1 AT2G41590 29.577 142 96 2 151 290 80 219 2.05e-15 77.8
MS.gene44083.t1 AT3G31430 28.302 159 102 4 134 289 162 311 1.24e-14 75.1
MS.gene44083.t1 AT3G47920 28.873 142 97 2 151 290 9 148 2.68e-14 73.9
MS.gene44083.t1 AT5G25200 27.152 151 105 3 143 290 71 219 4.30e-13 70.9
MS.gene44083.t1 AT5G18636 27.152 151 105 3 143 290 71 219 5.54e-13 70.5
MS.gene44083.t1 AT2G02103 27.815 151 104 3 143 290 71 219 5.54e-13 70.9
MS.gene44083.t1 AT2G13450 27.660 141 98 2 151 289 80 218 7.91e-13 70.1
MS.gene44083.t1 AT4G02000 27.941 136 94 2 157 290 6 139 2.72e-12 67.8

Find 140 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCAGCATCATGTTGATTT+TGG 0.134036 1.3:-58321184 None:intergenic
TCCAAAACGGCAGCGGTTTC+AGG 0.211234 1.3:-58320500 None:intergenic
ACCTGAAACCGCTGCCGTTT+TGG 0.217365 1.3:+58320499 MS.gene44083:CDS
TTTGGGCTGCTGCCGCATCT+TGG 0.238682 1.3:+58320190 MS.gene44083:CDS
TTTCTAGTGCCACCCTCCTT+TGG 0.277016 1.3:+58320172 MS.gene44083:CDS
TTCTAGTGCCACCCTCCTTT+GGG 0.277962 1.3:+58320173 MS.gene44083:CDS
CCGCCGACAGTTCTTGCATT+TGG 0.285178 1.3:-58318553 None:intergenic
TCTCTTCCAGTTTCACTATA+AGG 0.289552 1.3:+58320648 MS.gene44083:CDS
TTGGGCTGCTGCCGCATCTT+GGG 0.315762 1.3:+58320191 MS.gene44083:CDS
TGGCTCGGAGCTGAGGAAAA+TGG 0.325324 1.3:+58321502 MS.gene44083:CDS
TGATTCTCATATAGGAACTA+TGG 0.325620 1.3:-58320897 None:intergenic
CATCTACCTTATAGTGAAAC+TGG 0.329724 1.3:-58320654 None:intergenic
CAGGTTCATGGGCTACCTTT+TGG 0.336188 1.3:+58320796 MS.gene44083:CDS
ATTTGATGCTGATGGGGCTT+TGG 0.344122 1.3:+58321576 MS.gene44083:CDS
CAGGTTCGGATGCTAGGTTT+AGG 0.344831 1.3:-58320481 None:intergenic
TGCTTGCAAAGTGCACCTTC+TGG 0.349033 1.3:+58321364 MS.gene44083:CDS
TGACACTTTGATTCTCATAT+AGG 0.351145 1.3:-58320905 None:intergenic
AGGTTCGGATGCTAGGTTTA+GGG 0.352638 1.3:-58320480 None:intergenic
GCATCTGTAGCTCGGCCAGC+AGG 0.352925 1.3:-58321209 None:intergenic
TCATGGCAGTGAGTTGGTTC+TGG 0.357011 1.3:-58321280 None:intergenic
GATGAAGTGTACGAGGAAAA+TGG 0.359029 1.3:+58321482 MS.gene44083:CDS
TGTCACATGTGTGGAGTTAT+CGG 0.359505 1.3:+58321027 MS.gene44083:CDS
CCTAACGTCGGTCAAGGTAT+AGG 0.366982 1.3:+58320829 MS.gene44083:CDS
GCTGCTGCCGCATCTTGGGC+TGG 0.383629 1.3:+58320195 MS.gene44083:CDS
TTTGATGCTGATGGGGCTTT+GGG 0.385396 1.3:+58321577 MS.gene44083:CDS
GCAGGGAAGCCGAGCACTAA+AGG 0.390412 1.3:-58321434 None:intergenic
AACGGCAGCGGTTTCAGGTT+CGG 0.392436 1.3:-58320495 None:intergenic
ATATCGATCATCCACAGATT+TGG 0.394768 1.3:-58320626 None:intergenic
TGAGGAAAATGGCTCGGATC+TGG 0.401645 1.3:+58321513 MS.gene44083:CDS
AGCAAGGACATCTTGTTTCA+TGG 0.401955 1.3:-58321297 None:intergenic
CCCACACACCTAAGTCTTGA+TGG 0.407648 1.3:+58320431 MS.gene44083:CDS
CCTAGGGTTTCCACCTCCTA+AGG 0.407857 1.3:+58320149 MS.gene44083:intron
CCAAGCGGGGTTGTGTTTGT+TGG 0.414645 1.3:+58318796 MS.gene44083:CDS
CAACAAACACAACCCCGCTT+GGG 0.419518 1.3:-58318795 None:intergenic
AACCCCGCTTGGGGTTTCAA+TGG 0.419821 1.3:-58318785 None:intergenic
CGGTTTCAGGTTCGGATGCT+AGG 0.422535 1.3:-58320487 None:intergenic
AGATACGGTCCATGACAATA+TGG 0.424155 1.3:-58320720 None:intergenic
GCTACAGATGCTGCTGATAC+AGG 0.426527 1.3:+58321221 MS.gene44083:CDS
TCGGAAACGTGTTGGTGGGT+GGG 0.428224 1.3:+58318601 MS.gene44083:CDS
CTGCTGTTTCACCGATTCCA+TGG 0.429205 1.3:+58320406 MS.gene44083:CDS
ACAAAAGACGCGACAGTACC+AGG 0.435415 1.3:-58320745 None:intergenic
CATGATGCTGCTGTCCCTGC+TGG 0.442048 1.3:+58321194 MS.gene44083:CDS
CCATCTTCGCGCCTGTGTTA+CGG 0.443611 1.3:+58318632 MS.gene44083:CDS
CCGACAGTTCTTGCATTTGG+AGG 0.445715 1.3:-58318550 None:intergenic
CAGGGAAGCCGAGCACTAAA+GGG 0.448125 1.3:-58321433 None:intergenic
TTAGTGCTCGGCTTCCCTGC+TGG 0.450841 1.3:+58321437 MS.gene44083:CDS
CCAGGTCGCCCTTTAGTGCT+CGG 0.453384 1.3:+58321425 MS.gene44083:CDS
TTCGGAAACGTGTTGGTGGG+TGG 0.460616 1.3:+58318600 MS.gene44083:CDS
AGGAACTATGGATAGAATTA+CGG 0.463173 1.3:-58320885 None:intergenic
ACACGCCACTCTTTCTTAAG+TGG 0.469272 1.3:-58320943 None:intergenic
CTTGTTTCATGGCAGTGAGT+TGG 0.470847 1.3:-58321286 None:intergenic
CCAACAAACACAACCCCGCT+TGG 0.478483 1.3:-58318796 None:intergenic
CTTATGCTTGCCCTTCAGAA+TGG 0.483019 1.3:+58321547 MS.gene44083:CDS
TGCATGGAAGCCAGACAAAC+GGG 0.483976 1.3:+58320594 MS.gene44083:intron
TCAGTCACAAACGGACCAGC+AGG 0.487166 1.3:-58321452 None:intergenic
GGCCGAAGTTCCTGTGGAGG+AGG 0.489482 1.3:-58321390 None:intergenic
TCGGCCTCTAGCTTGCTGCC+AGG 0.493541 1.3:+58321407 MS.gene44083:CDS
AACTGTCGGCGGCTTTCCGA+TGG 0.496320 1.3:+58318564 MS.gene44083:CDS
ATCGAGCCTAACGTCGGTCA+AGG 0.498663 1.3:+58320823 MS.gene44083:CDS
ACAGTTCTTGCATTTGGAGG+TGG 0.507323 1.3:-58318547 None:intergenic
TGGTTTCGGAAACGTGTTGG+TGG 0.509300 1.3:+58318596 MS.gene44083:CDS
CGACAATTTCCATATTGTCA+TGG 0.510596 1.3:+58320711 MS.gene44083:CDS
TCTTGCATTTGGAGGTGGTA+CGG 0.510729 1.3:-58318542 None:intergenic
ATGCGGCAGCAGCCCAAAGG+AGG 0.512313 1.3:-58320185 None:intergenic
CCGAGCACTAAAGGGCGACC+TGG 0.514417 1.3:-58321425 None:intergenic
GGAGAACCATTTGATGCTGA+TGG 0.514601 1.3:+58321568 MS.gene44083:CDS
ACTTAGGTGTGTGGGATCCA+TGG 0.514712 1.3:-58320423 None:intergenic
TGGTCTTACCTTGTCAGAGG+AGG 0.519285 1.3:+58320451 MS.gene44083:CDS
CATGGAATCGGTGAAACAGC+AGG 0.523003 1.3:-58320405 None:intergenic
AAGATGCGGCAGCAGCCCAA+AGG 0.524383 1.3:-58320188 None:intergenic
GTGCATGGAAGCCAGACAAA+CGG 0.524977 1.3:+58320593 MS.gene44083:intron
ATGGCTCGGATCTGGAGAAA+AGG 0.533743 1.3:+58321521 MS.gene44083:CDS
CCGTAACACAGGCGCGAAGA+TGG 0.534498 1.3:-58318632 None:intergenic
GATTCTAACTCGAACAGCTC+CGG 0.534821 1.3:-58321069 None:intergenic
ACTGTCGATGCCCAGGCGTG+TGG 0.535206 1.3:+58318744 MS.gene44083:intron
TGGAAATTGTCGTAAAGCCA+TGG 0.540044 1.3:-58320700 None:intergenic
CTTCTGGCTTCCTCCTCCAC+AGG 0.542644 1.3:+58321380 MS.gene44083:CDS
AAAGCCCCATCAGCATCAAA+TGG 0.543152 1.3:-58321574 None:intergenic
GTGAAACAGCAGGGAAAACA+AGG 0.544811 1.3:-58320395 None:intergenic
TTCCTCCTCCACAGGAACTT+CGG 0.544846 1.3:+58321388 MS.gene44083:CDS
CAAATGGTTCTCCATTCTGA+AGG 0.545420 1.3:-58321558 None:intergenic
CATCTGTAGCTCGGCCAGCA+GGG 0.545795 1.3:-58321208 None:intergenic
GTTCCATTGAAACCCCAAGC+GGG 0.547931 1.3:+58318782 MS.gene44083:CDS
ACATACCGACAAAGTGTGTC+CGG 0.552011 1.3:+58321050 MS.gene44083:CDS
CGACAGTACCAGGGGAGATA+CGG 0.553321 1.3:-58320735 None:intergenic
CAAAAGACGCGACAGTACCA+GGG 0.553329 1.3:-58320744 None:intergenic
AGGAAAATGGCTCGGAGCTG+AGG 0.556829 1.3:+58321495 MS.gene44083:CDS
AGGTAAGACCATCAAGACTT+AGG 0.558306 1.3:-58320439 None:intergenic
GCACTAGAAACCTTAGGAGG+TGG 0.559243 1.3:-58320159 None:intergenic
CACGCCACTCTTTCTTAAGT+GGG 0.561128 1.3:-58320942 None:intergenic
CCTATACCTTGACCGACGTT+AGG 0.561749 1.3:-58320829 None:intergenic
CGGAGCTGAGGAAAATGGCT+CGG 0.561908 1.3:+58321507 MS.gene44083:CDS
TGATGGTCTTACCTTGTCAG+AGG 0.562010 1.3:+58320448 MS.gene44083:CDS
CAGCTCCGGACACACTTTGT+CGG 0.563584 1.3:-58321055 None:intergenic
GGTTTCGGAAACGTGTTGGT+GGG 0.564677 1.3:+58318597 MS.gene44083:CDS
GTCATGGACCGTATCTCCCC+TGG 0.565924 1.3:+58320727 MS.gene44083:CDS
AATCAGACAGTGTTCCAAAA+CGG 0.566213 1.3:-58320513 None:intergenic
GGTCTTACCTTGTCAGAGGA+GGG 0.570914 1.3:+58320452 MS.gene44083:CDS
GCGACCTGGCAGCAAGCTAG+AGG 0.573751 1.3:-58321411 None:intergenic
GTATGGTTTCGGAAACGTGT+TGG 0.578706 1.3:+58318593 MS.gene44083:CDS
TTAGGCTCGATAAAACCAAA+AGG 0.579046 1.3:-58320811 None:intergenic
AACAAACACAACCCCGCTTG+GGG 0.579072 1.3:-58318794 None:intergenic
GAGAACCATTTGATGCTGAT+GGG 0.580461 1.3:+58321569 MS.gene44083:CDS
CCATCAAGACTTAGGTGTGT+GGG 0.586050 1.3:-58320431 None:intergenic
AGCAGGGAAAACAAGGGGAA+TGG 0.589003 1.3:-58320388 None:intergenic
AGGGTGGCACTAGAAACCTT+AGG 0.593818 1.3:-58320165 None:intergenic
GTGTGTGGGATCCATGGAAT+CGG 0.595489 1.3:-58320417 None:intergenic
ACAGTGTTCCAAAACGGCAG+CGG 0.595940 1.3:-58320507 None:intergenic
TTCGAGTTAGAATCAGATGA+TGG 0.601513 1.3:+58321078 MS.gene44083:CDS
GGTTCTGGAAAGCAAGCATA+CGG 0.604437 1.3:-58321265 None:intergenic
GAAACCATACGCAAAACCAT+CGG 0.604472 1.3:-58318580 None:intergenic
TGCGGCAGCAGCCCAAAGGA+GGG 0.605312 1.3:-58320184 None:intergenic
AGAGGCCGAAGTTCCTGTGG+AGG 0.608452 1.3:-58321393 None:intergenic
TATCAGCAGCATCTGTAGCT+CGG 0.610243 1.3:-58321217 None:intergenic
CTGTCCCACTTAAGAAAGAG+TGG 0.611280 1.3:+58320938 MS.gene44083:CDS
CCTCCAAATGCAAGAACTGT+CGG 0.613230 1.3:+58318550 MS.gene44083:CDS
GCTAGAGGCCGAAGTTCCTG+TGG 0.616439 1.3:-58321396 None:intergenic
GGCAGCAGCCCAAAGGAGGG+TGG 0.618484 1.3:-58320181 None:intergenic
TTCCATTGAAACCCCAAGCG+GGG 0.625593 1.3:+58318783 MS.gene44083:CDS
GAAAATACTCACCGTAACAC+AGG 0.627358 1.3:-58318643 None:intergenic
ACCATCAAGACTTAGGTGTG+TGG 0.628252 1.3:-58320432 None:intergenic
TGGCGTGTTCGTGCTAGTAA+TGG 0.629117 1.3:+58320958 MS.gene44083:CDS
ATGGAATCGGTGAAACAGCA+GGG 0.632068 1.3:-58320404 None:intergenic
AAAAGACGCGACAGTACCAG+GGG 0.634056 1.3:-58320743 None:intergenic
AGTGTACGAGGAAAATGGCT+CGG 0.634209 1.3:+58321487 MS.gene44083:CDS
GGTTATGATCACCAAATCTG+TGG 0.636824 1.3:+58320615 MS.gene44083:CDS
GGTTAGACCCTCCTCTGACA+AGG 0.637786 1.3:-58320459 None:intergenic
AAATGGTTCTCCATTCTGAA+GGG 0.638265 1.3:-58321557 None:intergenic
CTGTGGAGGAGGAAGCCAGA+AGG 0.646790 1.3:-58321379 None:intergenic
AGAACCATTTGATGCTGATG+GGG 0.651003 1.3:+58321570 MS.gene44083:CDS
CAGTCACAAACGGACCAGCA+GGG 0.653798 1.3:-58321451 None:intergenic
TGCATTTGGAGGTGGTACGG+AGG 0.654512 1.3:-58318539 None:intergenic
GGAAGATCCAGCCCAAGATG+CGG 0.654826 1.3:-58320202 None:intergenic
TAACACAGGCGCGAAGATGG+TGG 0.660136 1.3:-58318629 None:intergenic
GAAACAGCAGGGAAAACAAG+GGG 0.683285 1.3:-58320393 None:intergenic
TGAAACAGCAGGGAAAACAA+GGG 0.693279 1.3:-58320394 None:intergenic
AAACAATGATGAAGTGTACG+AGG 0.699658 1.3:+58321475 MS.gene44083:CDS
GTGGCACTAGAAACCTTAGG+AGG 0.721602 1.3:-58320162 None:intergenic
AGTTCCATTGAAACCCCAAG+CGG 0.729416 1.3:+58318781 MS.gene44083:CDS
CCAAATGCAAGAACTGTCGG+CGG 0.741388 1.3:+58318553 MS.gene44083:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTATTTTTTAATATGTA+TGG - chr1.3:58319559-58319578 None:intergenic 10.0%
!! ATAGAAAGAAAATATACAAA+TGG + chr1.3:58318948-58318967 MS.gene44083:intron 15.0%
!! TAATAATATATATGAGCAAT+TGG + chr1.3:58320071-58320090 MS.gene44083:intron 15.0%
!!! AAAATAAGTTTGATTTATTC+TGG + chr1.3:58319569-58319588 MS.gene44083:intron 15.0%
!!! ATTTTCAATTTTTGATTGAA+GGG - chr1.3:58319118-58319137 None:intergenic 15.0%
!!! GTTTAGTATTACTTTTATTT+TGG - chr1.3:58319258-58319277 None:intergenic 15.0%
!!! TATTTTCAATTTTTGATTGA+AGG - chr1.3:58319119-58319138 None:intergenic 15.0%
!!! TTTAATGTTAGATTTGTTTA+GGG + chr1.3:58319935-58319954 MS.gene44083:intron 15.0%
!! AAAAATTACATAAAAACTGG+GGG - chr1.3:58320043-58320062 None:intergenic 20.0%
!! AAAATAAAAAATCCACAAAG+TGG - chr1.3:58319967-58319986 None:intergenic 20.0%
!! AAACAAATTGTCTCTATATA+TGG + chr1.3:58320123-58320142 MS.gene44083:intron 20.0%
!! AATTCAAGAAAATTACACTT+AGG - chr1.3:58318872-58318891 None:intergenic 20.0%
!! AGGAAAAATTACATAAAAAC+TGG - chr1.3:58320046-58320065 None:intergenic 20.0%
!! CAAAAATCAATATGATTCAA+GGG - chr1.3:58320772-58320791 None:intergenic 20.0%
!! CACTAAAGAAAATAACATAT+TGG + chr1.3:58319296-58319315 MS.gene44083:intron 20.0%
!! GAAAAATTACATAAAAACTG+GGG - chr1.3:58320044-58320063 None:intergenic 20.0%
!! GGAAAAATTACATAAAAACT+GGG - chr1.3:58320045-58320064 None:intergenic 20.0%
!!! CTTGAATCATATTGATTTTT+GGG + chr1.3:58320771-58320790 MS.gene44083:CDS 20.0%
!!! GTTTAATGTTAGATTTGTTT+AGG + chr1.3:58319934-58319953 MS.gene44083:intron 20.0%
!!! TTTTCTTTCTATTCATAGTT+TGG - chr1.3:58318940-58318959 None:intergenic 20.0%
! AACAAATCTAACATTAAACG+CGG - chr1.3:58319933-58319952 None:intergenic 25.0%
! AATAAGGAACTAGAAAAACA+AGG + chr1.3:58319218-58319237 MS.gene44083:intron 25.0%
! CCAAAAATCAATATGATTCA+AGG - chr1.3:58320773-58320792 None:intergenic 25.0%
! TGAAAACCAGATGAATAAAT+AGG - chr1.3:58320280-58320299 None:intergenic 25.0%
! TGAATTGAGATAGAAAATGA+AGG + chr1.3:58318886-58318905 MS.gene44083:intron 25.0%
!! AAGTTTTCTAGGTACATTTT+GGG + chr1.3:58320852-58320871 MS.gene44083:CDS 25.0%
!! CAATCATGTTATCATTTTGA+AGG - chr1.3:58319159-58319178 None:intergenic 25.0%
!! TGTTATTTATACCTACTCAT+TGG + chr1.3:58319177-58319196 MS.gene44083:intron 25.0%
!!! CCTTGAATCATATTGATTTT+TGG + chr1.3:58320770-58320789 MS.gene44083:CDS 25.0%
!!! GAGACAATTTGTTTTTATGT+TGG - chr1.3:58320117-58320136 None:intergenic 25.0%
!!! TGTTTTTCTAGTTCCTTATT+TGG - chr1.3:58319218-58319237 None:intergenic 25.0%
AAATGGAATTAGATGAGAAG+TGG + chr1.3:58318965-58318984 MS.gene44083:intron 30.0%
AATGGAATTAGATGAGAAGT+GGG + chr1.3:58318966-58318985 MS.gene44083:intron 30.0%
ACAAATCTAACATTAAACGC+GGG - chr1.3:58319932-58319951 None:intergenic 30.0%
AGAATAAGATGCTCTTGATA+AGG + chr1.3:58319045-58319064 MS.gene44083:intron 30.0%
AGGAACTATGGATAGAATTA+CGG - chr1.3:58320888-58320907 None:intergenic 30.0%
ATCACATATAAGGCCAAATA+AGG + chr1.3:58319202-58319221 MS.gene44083:intron 30.0%
ATCGATTGTCAACACAAAAT+CGG - chr1.3:58319890-58319909 None:intergenic 30.0%
ATGTCAATCAATAGATGGTT+GGG - chr1.3:58319797-58319816 None:intergenic 30.0%
CTTGATCTTTATCTCTAATC+AGG + chr1.3:58318690-58318709 MS.gene44083:intron 30.0%
GAATAGAAACATCTAGATCA+TGG - chr1.3:58320254-58320273 None:intergenic 30.0%
GAATTGCTCTTATAAGTTCT+TGG - chr1.3:58319088-58319107 None:intergenic 30.0%
GAATTTCATCATTTCACCAA+AGG - chr1.3:58319624-58319643 None:intergenic 30.0%
TCTTGATAAGGATCTAGATT+TGG + chr1.3:58319057-58319076 MS.gene44083:intron 30.0%
TGAAATTCAATCTTGTGTCT+CGG + chr1.3:58319636-58319655 MS.gene44083:intron 30.0%
TGACACTTTGATTCTCATAT+AGG - chr1.3:58320908-58320927 None:intergenic 30.0%
TGATTAAGCTTATGATCAGT+TGG + chr1.3:58319698-58319717 MS.gene44083:intron 30.0%
TGATTCTCATATAGGAACTA+TGG - chr1.3:58320900-58320919 None:intergenic 30.0%
! ATGTTAGATTTGTTTAGGGT+TGG + chr1.3:58319939-58319958 MS.gene44083:intron 30.0%
! GAAGTTTTCTAGGTACATTT+TGG + chr1.3:58320851-58320870 MS.gene44083:CDS 30.0%
! TCATTGTTTTCAGTCACAAA+CGG - chr1.3:58321464-58321483 None:intergenic 30.0%
!! TCATGTTATCATTTTGAAGG+AGG - chr1.3:58319156-58319175 None:intergenic 30.0%
!! TTATTTGGCCTTATATGTGA+TGG - chr1.3:58319203-58319222 None:intergenic 30.0%
!!! ATTTTTTGTTTTGCCCGTTT+GGG + chr1.3:58319992-58320011 MS.gene44083:intron 30.0%
!!! TATTTTTTGTTTTGCCCGTT+TGG + chr1.3:58319991-58320010 MS.gene44083:intron 30.0%
!!! TCATATTGATTTTTGGGTTC+AGG + chr1.3:58320777-58320796 MS.gene44083:CDS 30.0%
AAACAATGATGAAGTGTACG+AGG + chr1.3:58321475-58321494 MS.gene44083:CDS 35.0%
AAATGGTTCTCCATTCTGAA+GGG - chr1.3:58321560-58321579 None:intergenic 35.0%
AACCAGATGAATAAATAGGC+AGG - chr1.3:58320276-58320295 None:intergenic 35.0%
AATCAGACAGTGTTCCAAAA+CGG - chr1.3:58320516-58320535 None:intergenic 35.0%
AATGCAGTGCATGCTAAAAA+AGG + chr1.3:58321326-58321345 MS.gene44083:CDS 35.0%
ATATCGATCATCCACAGATT+TGG - chr1.3:58320629-58320648 None:intergenic 35.0%
CATCATTTCACCAAAGGAAA+AGG - chr1.3:58319618-58319637 None:intergenic 35.0%
CATCTACCTTATAGTGAAAC+TGG - chr1.3:58320657-58320676 None:intergenic 35.0%
CATGTCAATCAATAGATGGT+TGG - chr1.3:58319798-58319817 None:intergenic 35.0%
CCTAAAAACGAACAAACCAA+CGG - chr1.3:58319372-58319391 None:intergenic 35.0%
CGACAATTTCCATATTGTCA+TGG + chr1.3:58320711-58320730 MS.gene44083:CDS 35.0%
CTTATCGTTCATCTTGAATG+TGG - chr1.3:58319003-58319022 None:intergenic 35.0%
GGATATGCTAATTACTGTGT+TGG + chr1.3:58319728-58319747 MS.gene44083:intron 35.0%
GTCTCATGTCAATCAATAGA+TGG - chr1.3:58319802-58319821 None:intergenic 35.0%
GTGCATGCTAAAAAAGGTAA+CGG + chr1.3:58321332-58321351 MS.gene44083:CDS 35.0%
TATGCTAATTACTGTGTTGG+CGG + chr1.3:58319731-58319750 MS.gene44083:intron 35.0%
TCAAGAAATATTCCTTACCG+CGG - chr1.3:58318675-58318694 None:intergenic 35.0%
TCTCTATATATGGTCTCCTA+GGG + chr1.3:58320133-58320152 MS.gene44083:intron 35.0%
TCTCTTCCAGTTTCACTATA+AGG + chr1.3:58320648-58320667 MS.gene44083:CDS 35.0%
TGAACGATAAGATCGAATTG+CGG + chr1.3:58319012-58319031 MS.gene44083:intron 35.0%
TGTTGGTACACTACTCTAAT+CGG - chr1.3:58320100-58320119 None:intergenic 35.0%
TTAGGCTCGATAAAACCAAA+AGG - chr1.3:58320814-58320833 None:intergenic 35.0%
TTCCTGCCTATTTATTCATC+TGG + chr1.3:58320271-58320290 MS.gene44083:intron 35.0%
TTGATTGACATGAGACTGTA+TGG + chr1.3:58319806-58319825 MS.gene44083:intron 35.0%
! CAAGGTATAGGAAGTTTTCT+AGG + chr1.3:58320841-58320860 MS.gene44083:CDS 35.0%
! CTTTTACACACCTTTTCCTT+TGG + chr1.3:58319605-58319624 MS.gene44083:intron 35.0%
! TTATGATCAGTTGGTGTTTG+TGG + chr1.3:58319707-58319726 MS.gene44083:intron 35.0%
! TTCGAGTTAGAATCAGATGA+TGG + chr1.3:58321078-58321097 MS.gene44083:CDS 35.0%
! TTTAGCATGCACTGCATTTT+GGG - chr1.3:58321324-58321343 None:intergenic 35.0%
! TTTTAGCATGCACTGCATTT+TGG - chr1.3:58321325-58321344 None:intergenic 35.0%
!! GATTTATTCTGGCTTGTTTC+TGG + chr1.3:58319580-58319599 MS.gene44083:intron 35.0%
!! TCAAGAGCATCTTATTCTTG+TGG - chr1.3:58319043-58319062 None:intergenic 35.0%
!! TTGTATGATAGCTTGTTGTG+AGG + chr1.3:58319665-58319684 MS.gene44083:intron 35.0%
!!! AACCACGACGAGTTTTAAAA+CGG - chr1.3:58319397-58319416 None:intergenic 35.0%
!!! ATTTTTGGGTTCAGGTTCAT+GGG + chr1.3:58320785-58320804 MS.gene44083:CDS 35.0%
!!! GTTGTTTTTTGTCACATGTG+TGG + chr1.3:58321018-58321037 MS.gene44083:CDS 35.0%
AAAGCGGTTTACAGGAACTA+GGG - chr1.3:58320324-58320343 None:intergenic 40.0%
ACGGACAAATGCTTGAAAGT+AGG - chr1.3:58319768-58319787 None:intergenic 40.0%
ACTCACGATGGTGTACAAAA+AGG + chr1.3:58319345-58319364 MS.gene44083:intron 40.0%
AGAACCATTTGATGCTGATG+GGG + chr1.3:58321570-58321589 MS.gene44083:CDS 40.0%
AGACATTCGCTCACTGAAAT+AGG - chr1.3:58320572-58320591 None:intergenic 40.0%
AGATACGGTCCATGACAATA+TGG - chr1.3:58320723-58320742 None:intergenic 40.0%
AGCAGTACCAATGCATTGTT+GGG - chr1.3:58321136-58321155 None:intergenic 40.0%
AGGTAAGACCATCAAGACTT+AGG - chr1.3:58320442-58320461 None:intergenic 40.0%
ATAGATGGTTGGGATAACCA+CGG - chr1.3:58319787-58319806 None:intergenic 40.0%
ATATGTGATGGCCAATGAGT+AGG - chr1.3:58319191-58319210 None:intergenic 40.0%
ATGAGATGCAACTTCTCACA+AGG - chr1.3:58320226-58320245 None:intergenic 40.0%
CAAATGGTTCTCCATTCTGA+AGG - chr1.3:58321561-58321580 None:intergenic 40.0%
CAATAAGGATTCACCATGCA+AGG + chr1.3:58318838-58318857 MS.gene44083:intron 40.0%
CGGACAAATGCTTGAAAGTA+GGG - chr1.3:58319767-58319786 None:intergenic 40.0%
CTCATTGGCCATCACATATA+AGG + chr1.3:58319192-58319211 MS.gene44083:intron 40.0%
CTTGCATGGTGAATCCTTAT+TGG - chr1.3:58318840-58318859 None:intergenic 40.0%
GAAAATACTCACCGTAACAC+AGG - chr1.3:58318646-58318665 None:intergenic 40.0%
GAAACCATACGCAAAACCAT+CGG - chr1.3:58318583-58318602 None:intergenic 40.0%
GAGAACCATTTGATGCTGAT+GGG + chr1.3:58321569-58321588 MS.gene44083:CDS 40.0%
GATGAAGTGTACGAGGAAAA+TGG + chr1.3:58321482-58321501 MS.gene44083:CDS 40.0%
GATTTATCCAGGGGCTTATA+TGG + chr1.3:58319497-58319516 MS.gene44083:intron 40.0%
GGACAAATGCTTGAAAGTAG+GGG - chr1.3:58319766-58319785 None:intergenic 40.0%
GGTTATGATCACCAAATCTG+TGG + chr1.3:58320615-58320634 MS.gene44083:CDS 40.0%
GTCTCTATATATGGTCTCCT+AGG + chr1.3:58320132-58320151 MS.gene44083:intron 40.0%
TACTTTCAAGCATTTGTCCG+TGG + chr1.3:58319767-58319786 MS.gene44083:intron 40.0%
TCGATTCATTCGCCAAACTT+TGG + chr1.3:58319905-58319924 MS.gene44083:intron 40.0%
TGAAACAGCAGGGAAAACAA+GGG - chr1.3:58320397-58320416 None:intergenic 40.0%
TGGAAATTGTCGTAAAGCCA+TGG - chr1.3:58320703-58320722 None:intergenic 40.0%
TGTCACATGTGTGGAGTTAT+CGG + chr1.3:58321027-58321046 MS.gene44083:CDS 40.0%
TTAGGTCAAAGATCCTTGCA+TGG - chr1.3:58318854-58318873 None:intergenic 40.0%
! ACTGTCTGATTGGTAGGTTT+TGG + chr1.3:58320525-58320544 MS.gene44083:intron 40.0%
! AGAGCATCTTATTCTTGTGG+CGG - chr1.3:58319040-58319059 None:intergenic 40.0%
! AGATGATGGTATTCGCAACT+GGG + chr1.3:58321092-58321111 MS.gene44083:intron 40.0%
! AGCAAGGACATCTTGTTTCA+TGG - chr1.3:58321300-58321319 None:intergenic 40.0%
!! ATGCTTGCTGTGATTTATCC+AGG + chr1.3:58319486-58319505 MS.gene44083:intron 40.0%
!! GATGGTTTTGCGTATGGTTT+CGG + chr1.3:58318582-58318601 MS.gene44083:CDS 40.0%
!! TGCTTGCTGTGATTTATCCA+GGG + chr1.3:58319487-58319506 MS.gene44083:intron 40.0%
!!! CAGCAGCATCATGTTGATTT+TGG - chr1.3:58321187-58321206 None:intergenic 40.0%
!!! CCGTTGGTTTGTTCGTTTTT+AGG + chr1.3:58319369-58319388 MS.gene44083:intron 40.0%
!!! GATTTTTGGGTTCAGGTTCA+TGG + chr1.3:58320784-58320803 MS.gene44083:CDS 40.0%
!!! GTTTTGGAACACTGTCTGAT+TGG + chr1.3:58320515-58320534 MS.gene44083:CDS 40.0%
!!! TGTTGGGCAGGTTTTAGATA+CGG - chr1.3:58321120-58321139 None:intergenic 40.0%
!!! TTCCGTTTTAAAACTCGTCG+TGG + chr1.3:58319392-58319411 MS.gene44083:intron 40.0%
AAAACTCGTCGTGGTTTCAC+TGG + chr1.3:58319401-58319420 MS.gene44083:intron 45.0%
AAACCTGCCCAACAATGCAT+TGG + chr1.3:58321126-58321145 MS.gene44083:intron 45.0%
AAAGCCCCATCAGCATCAAA+TGG - chr1.3:58321577-58321596 None:intergenic 45.0%
AACATATTGGTCCTCGTCAG+CGG + chr1.3:58319309-58319328 MS.gene44083:intron 45.0%
AAGGGAAGAAAGCGGTTTAC+AGG - chr1.3:58320332-58320351 None:intergenic 45.0%
ACACGCCACTCTTTCTTAAG+TGG - chr1.3:58320946-58320965 None:intergenic 45.0%
ACAGTTCTTGCATTTGGAGG+TGG - chr1.3:58318550-58318569 None:intergenic 45.0%
ACATACCGACAAAGTGTGTC+CGG + chr1.3:58321050-58321069 MS.gene44083:CDS 45.0%
ACCATCAAGACTTAGGTGTG+TGG - chr1.3:58320435-58320454 None:intergenic 45.0%
AGAGACAGACGCAAGACTAA+GGG - chr1.3:58320350-58320369 None:intergenic 45.0%
AGATCCAGTAATGATTCGCG+TGG + chr1.3:58319436-58319455 MS.gene44083:intron 45.0%
AGGTTCGGATGCTAGGTTTA+GGG - chr1.3:58320483-58320502 None:intergenic 45.0%
AGTGTACGAGGAAAATGGCT+CGG + chr1.3:58321487-58321506 MS.gene44083:CDS 45.0%
AGTTCCATTGAAACCCCAAG+CGG + chr1.3:58318781-58318800 MS.gene44083:CDS 45.0%
ATCCAGTAATGATTCGCGTG+GGG + chr1.3:58319438-58319457 MS.gene44083:intron 45.0%
ATGCTAGTTGTCGTTGTTGC+AGG + chr1.3:58319846-58319865 MS.gene44083:intron 45.0%
ATGGAATCGGTGAAACAGCA+GGG - chr1.3:58320407-58320426 None:intergenic 45.0%
ATTTGATGCTGATGGGGCTT+TGG + chr1.3:58321576-58321595 MS.gene44083:CDS 45.0%
CAAATGCTTGAAAGTAGGGG+TGG - chr1.3:58319763-58319782 None:intergenic 45.0%
CACGCCACTCTTTCTTAAGT+GGG - chr1.3:58320945-58320964 None:intergenic 45.0%
CAGCAGTACCAATGCATTGT+TGG - chr1.3:58321137-58321156 None:intergenic 45.0%
CAGCTGATGTGGATCCAATA+AGG + chr1.3:58318823-58318842 MS.gene44083:intron 45.0%
CCATCAAGACTTAGGTGTGT+GGG - chr1.3:58320434-58320453 None:intergenic 45.0%
CCTCCAAATGCAAGAACTGT+CGG + chr1.3:58318550-58318569 MS.gene44083:CDS 45.0%
CTGTCCCACTTAAGAAAGAG+TGG + chr1.3:58320938-58320957 MS.gene44083:CDS 45.0%
CTTATGCTTGCCCTTCAGAA+TGG + chr1.3:58321547-58321566 MS.gene44083:CDS 45.0%
CTTGTTTCATGGCAGTGAGT+TGG - chr1.3:58321289-58321308 None:intergenic 45.0%
GAAACAGCAGGGAAAACAAG+GGG - chr1.3:58320396-58320415 None:intergenic 45.0%
GAAAGCGGTTTACAGGAACT+AGG - chr1.3:58320325-58320344 None:intergenic 45.0%
GATCCAGTAATGATTCGCGT+GGG + chr1.3:58319437-58319456 MS.gene44083:intron 45.0%
GATTCTAACTCGAACAGCTC+CGG - chr1.3:58321072-58321091 None:intergenic 45.0%
GCAAGACTAAGGGAAGAAAG+CGG - chr1.3:58320340-58320359 None:intergenic 45.0%
GCTCACTGAAATAGGCAATC+TGG - chr1.3:58320564-58320583 None:intergenic 45.0%
GGAGAACCATTTGATGCTGA+TGG + chr1.3:58321568-58321587 MS.gene44083:CDS 45.0%
GTATGGTTTCGGAAACGTGT+TGG + chr1.3:58318593-58318612 MS.gene44083:CDS 45.0%
GTGAAACAGCAGGGAAAACA+AGG - chr1.3:58320398-58320417 None:intergenic 45.0%
GTGATCATAACCCGTTTGTC+TGG - chr1.3:58320607-58320626 None:intergenic 45.0%
TATCAGCAGCATCTGTAGCT+CGG - chr1.3:58321220-58321239 None:intergenic 45.0%
TCTTGCATTTGGAGGTGGTA+CGG - chr1.3:58318545-58318564 None:intergenic 45.0%
TGCTAGTTGTCGTTGTTGCA+GGG + chr1.3:58319847-58319866 MS.gene44083:intron 45.0%
TGGAACACTGTCTGATTGGT+AGG + chr1.3:58320519-58320538 MS.gene44083:intron 45.0%
TGGTGTACAAAAAGGTCCGT+TGG + chr1.3:58319353-58319372 MS.gene44083:intron 45.0%
TGTATGAACTACCGCCATCA+CGG - chr1.3:58319536-58319555 None:intergenic 45.0%
TTAAACGCGGGTCCAAAGTT+TGG - chr1.3:58319920-58319939 None:intergenic 45.0%
TTACGAACCATATAAGCCCC+TGG - chr1.3:58319507-58319526 None:intergenic 45.0%
TTAGGGTTGGATCCACTTTG+TGG + chr1.3:58319952-58319971 MS.gene44083:intron 45.0%
TTTGATGCTGATGGGGCTTT+GGG + chr1.3:58321577-58321596 MS.gene44083:CDS 45.0%
! CAGATGATGGTATTCGCAAC+TGG + chr1.3:58321091-58321110 MS.gene44083:intron 45.0%
! GATGATGGTATTCGCAACTG+GGG + chr1.3:58321093-58321112 MS.gene44083:intron 45.0%
! GTTCGTAAGCTTTTCCGTGA+TGG + chr1.3:58319519-58319538 MS.gene44083:intron 45.0%
! TGATGGTCTTACCTTGTCAG+AGG + chr1.3:58320448-58320467 MS.gene44083:CDS 45.0%
!! AGATGCTGCTCGTGTTTTAG+AGG + chr1.3:58320672-58320691 MS.gene44083:CDS 45.0%
!! AGCTTGTTGTGAGGCAGAAA+TGG + chr1.3:58319674-58319693 MS.gene44083:intron 45.0%
!! CTTTCCGATGGTTTTGCGTA+TGG + chr1.3:58318576-58318595 MS.gene44083:CDS 45.0%
!! GCTTGCTGTGATTTATCCAG+GGG + chr1.3:58319488-58319507 MS.gene44083:intron 45.0%
!! GGTTCTGGAAAGCAAGCATA+CGG - chr1.3:58321268-58321287 None:intergenic 45.0%
!! GGTTTTATCGAGCCTAACGT+CGG + chr1.3:58320817-58320836 MS.gene44083:CDS 45.0%
!!! GCATCATGTTGATTTTGGCG+CGG - chr1.3:58321182-58321201 None:intergenic 45.0%
!!! GTGTTTTAGAGGAAGGTCCA+TGG + chr1.3:58320683-58320702 MS.gene44083:CDS 45.0%
!! TCATATATATTATTAAAAAA+AGG - chr1.3:58320066-58320085 None:intergenic 5.0%
AAAAGACGCGACAGTACCAG+GGG - chr1.3:58320746-58320765 None:intergenic 50.0%
AAATATTCCTTACCGCGGCG+CGG - chr1.3:58318670-58318689 None:intergenic 50.0%
AACAAACACAACCCCGCTTG+GGG - chr1.3:58318797-58318816 None:intergenic 50.0%
AACCCCACGCGAATCATTAC+TGG - chr1.3:58319443-58319462 None:intergenic 50.0%
ACAAAAGACGCGACAGTACC+AGG - chr1.3:58320748-58320767 None:intergenic 50.0%
ACAGTGTTCCAAAACGGCAG+CGG - chr1.3:58320510-58320529 None:intergenic 50.0%
ACCCAGTCAACAACCCAAAC+GGG - chr1.3:58320008-58320027 None:intergenic 50.0%
ACTTAGGTGTGTGGGATCCA+TGG - chr1.3:58320426-58320445 None:intergenic 50.0%
AGAACACAATCCACACGCCT+GGG - chr1.3:58318757-58318776 None:intergenic 50.0%
AGCAGGGAAAACAAGGGGAA+TGG - chr1.3:58320391-58320410 None:intergenic 50.0%
AGGGTGGCACTAGAAACCTT+AGG - chr1.3:58320168-58320187 None:intergenic 50.0%
CAAAAGACGCGACAGTACCA+GGG - chr1.3:58320747-58320766 None:intergenic 50.0%
CAACAAACACAACCCCGCTT+GGG - chr1.3:58318798-58318817 None:intergenic 50.0%
CAGAGACAGACGCAAGACTA+AGG - chr1.3:58320351-58320370 None:intergenic 50.0%
CAGGTTCGGATGCTAGGTTT+AGG - chr1.3:58320484-58320503 None:intergenic 50.0%
CATGGAATCGGTGAAACAGC+AGG - chr1.3:58320408-58320427 None:intergenic 50.0%
CCAAATGCAAGAACTGTCGG+CGG + chr1.3:58318553-58318572 MS.gene44083:CDS 50.0%
CCCACACACCTAAGTCTTGA+TGG + chr1.3:58320431-58320450 MS.gene44083:CDS 50.0%
CCGACAGTTCTTGCATTTGG+AGG - chr1.3:58318553-58318572 None:intergenic 50.0%
CCTAACGTCGGTCAAGGTAT+AGG + chr1.3:58320829-58320848 MS.gene44083:CDS 50.0%
CCTATACCTTGACCGACGTT+AGG - chr1.3:58320832-58320851 None:intergenic 50.0%
GAAAACAAGGGGAATGGCTG+TGG - chr1.3:58320385-58320404 None:intergenic 50.0%
GACCCAGTCAACAACCCAAA+CGG - chr1.3:58320009-58320028 None:intergenic 50.0%
GCACTAGAAACCTTAGGAGG+TGG - chr1.3:58320162-58320181 None:intergenic 50.0%
GCTACAGATGCTGCTGATAC+AGG + chr1.3:58321221-58321240 MS.gene44083:CDS 50.0%
GGTCTTACCTTGTCAGAGGA+GGG + chr1.3:58320452-58320471 MS.gene44083:CDS 50.0%
GTACCAATGCATTGTTGGGC+AGG - chr1.3:58321132-58321151 None:intergenic 50.0%
GTGCATGGAAGCCAGACAAA+CGG + chr1.3:58320593-58320612 MS.gene44083:intron 50.0%
GTGGCACTAGAAACCTTAGG+AGG - chr1.3:58320165-58320184 None:intergenic 50.0%
GTGTGTGGGATCCATGGAAT+CGG - chr1.3:58320420-58320439 None:intergenic 50.0%
GTTCCATTGAAACCCCAAGC+GGG + chr1.3:58318782-58318801 MS.gene44083:CDS 50.0%
TAAATCCACTGTCGATGCCC+AGG + chr1.3:58318737-58318756 MS.gene44083:intron 50.0%
TAGAACACAATCCACACGCC+TGG - chr1.3:58318758-58318777 None:intergenic 50.0%
TCGTTGTTGCAGGGAGTTGA+TGG + chr1.3:58319856-58319875 MS.gene44083:intron 50.0%
TGCATGGAAGCCAGACAAAC+GGG + chr1.3:58320594-58320613 MS.gene44083:intron 50.0%
TGCTTGCAAAGTGCACCTTC+TGG + chr1.3:58321364-58321383 MS.gene44083:CDS 50.0%
TGGCGTGTTCGTGCTAGTAA+TGG + chr1.3:58320958-58320977 MS.gene44083:CDS 50.0%
TGGTTTCGGAAACGTGTTGG+TGG + chr1.3:58318596-58318615 MS.gene44083:CDS 50.0%
TTCCATTGAAACCCCAAGCG+GGG + chr1.3:58318783-58318802 MS.gene44083:CDS 50.0%
TTCCTCCTCCACAGGAACTT+CGG + chr1.3:58321388-58321407 MS.gene44083:CDS 50.0%
TTCTAGTGCCACCCTCCTTT+GGG + chr1.3:58320173-58320192 MS.gene44083:CDS 50.0%
TTGTTGGTACGCAGCTGATG+TGG + chr1.3:58318812-58318831 MS.gene44083:intron 50.0%
! ATGGCTCGGATCTGGAGAAA+AGG + chr1.3:58321521-58321540 MS.gene44083:CDS 50.0%
! CGTAAGCTTTTCCGTGATGG+CGG + chr1.3:58319522-58319541 MS.gene44083:intron 50.0%
! GGTGTTGTCTTGACTCACGA+TGG + chr1.3:58319333-58319352 MS.gene44083:intron 50.0%
! GGTTTCGGAAACGTGTTGGT+GGG + chr1.3:58318597-58318616 MS.gene44083:CDS 50.0%
! TGAGGAAAATGGCTCGGATC+TGG + chr1.3:58321513-58321532 MS.gene44083:CDS 50.0%
! TGGTCTTACCTTGTCAGAGG+AGG + chr1.3:58320451-58320470 MS.gene44083:CDS 50.0%
! TTTCTAGTGCCACCCTCCTT+TGG + chr1.3:58320172-58320191 MS.gene44083:CDS 50.0%
!! CAGGTTCATGGGCTACCTTT+TGG + chr1.3:58320796-58320815 MS.gene44083:CDS 50.0%
!! CGTCGTGGTTTCACTGGTTT+CGG + chr1.3:58319407-58319426 MS.gene44083:intron 50.0%
!! CTGCTGTTTCACCGATTCCA+TGG + chr1.3:58320406-58320425 MS.gene44083:CDS 50.0%
!! CTTAGTCTTGCGTCTGTCTC+TGG + chr1.3:58320349-58320368 MS.gene44083:intron 50.0%
!! TCATGGCAGTGAGTTGGTTC+TGG - chr1.3:58321283-58321302 None:intergenic 50.0%
!! TTTGGGTTGTTGACTGGGTC+AGG + chr1.3:58320009-58320028 MS.gene44083:intron 50.0%
!!! GCTGCTCGTGTTTTAGAGGA+AGG + chr1.3:58320676-58320695 MS.gene44083:CDS 50.0%
AACCCCGCTTGGGGTTTCAA+TGG - chr1.3:58318788-58318807 None:intergenic 55.0%
ATATTGGTCCTCGTCAGCGG+CGG + chr1.3:58319312-58319331 MS.gene44083:intron 55.0%
ATCGAGCCTAACGTCGGTCA+AGG + chr1.3:58320823-58320842 MS.gene44083:CDS 55.0%
CAGCTCCGGACACACTTTGT+CGG - chr1.3:58321058-58321077 None:intergenic 55.0%
CAGGGAAGCCGAGCACTAAA+GGG - chr1.3:58321436-58321455 None:intergenic 55.0%
CAGTCACAAACGGACCAGCA+GGG - chr1.3:58321454-58321473 None:intergenic 55.0%
CCAACAAACACAACCCCGCT+TGG - chr1.3:58318799-58318818 None:intergenic 55.0%
CCAAGCGGGGTTGTGTTTGT+TGG + chr1.3:58318796-58318815 MS.gene44083:CDS 55.0%
CCATCTTCGCGCCTGTGTTA+CGG + chr1.3:58318632-58318651 MS.gene44083:CDS 55.0%
CCGCCGACAGTTCTTGCATT+TGG - chr1.3:58318556-58318575 None:intergenic 55.0%
CCTAGGGTTTCCACCTCCTA+AGG + chr1.3:58320149-58320168 MS.gene44083:intron 55.0%
CCTTAGGAGGTGGAAACCCT+AGG - chr1.3:58320152-58320171 None:intergenic 55.0%
CGACAGTACCAGGGGAGATA+CGG - chr1.3:58320738-58320757 None:intergenic 55.0%
CGGAGCTGAGGAAAATGGCT+CGG + chr1.3:58321507-58321526 MS.gene44083:CDS 55.0%
GGAAGATCCAGCCCAAGATG+CGG - chr1.3:58320205-58320224 None:intergenic 55.0%
GGGGAATGGCTGTGGAAACA+AGG - chr1.3:58320377-58320396 None:intergenic 55.0%
GGGGTTCGTTAGGCTCAAGA+GGG + chr1.3:58319457-58319476 MS.gene44083:intron 55.0%
GGTTAGACCCTCCTCTGACA+AGG - chr1.3:58320462-58320481 None:intergenic 55.0%
GTGAGCGAATGTCTCGTGCA+TGG + chr1.3:58320578-58320597 MS.gene44083:intron 55.0%
TAACACAGGCGCGAAGATGG+TGG - chr1.3:58318632-58318651 None:intergenic 55.0%
TCAGTCACAAACGGACCAGC+AGG - chr1.3:58321455-58321474 None:intergenic 55.0%
TCCAAAACGGCAGCGGTTTC+AGG - chr1.3:58320503-58320522 None:intergenic 55.0%
TGATTCGCGTGGGGTTCGTT+AGG + chr1.3:58319447-58319466 MS.gene44083:intron 55.0%
TGCATTTGGAGGTGGTACGG+AGG - chr1.3:58318542-58318561 None:intergenic 55.0%
TGGGGTTCGTTAGGCTCAAG+AGG + chr1.3:58319456-58319475 MS.gene44083:intron 55.0%
! AGGAAAATGGCTCGGAGCTG+AGG + chr1.3:58321495-58321514 MS.gene44083:CDS 55.0%
! GCACTGCATTTTGGGCAGCA+AGG - chr1.3:58321316-58321335 None:intergenic 55.0%
! TCGGAAACGTGTTGGTGGGT+GGG + chr1.3:58318601-58318620 MS.gene44083:CDS 55.0%
! TGAGTATTTTCACCGCGCCG+CGG + chr1.3:58318655-58318674 MS.gene44083:intron 55.0%
! TGGCTCGGAGCTGAGGAAAA+TGG + chr1.3:58321502-58321521 MS.gene44083:CDS 55.0%
! TTCGGAAACGTGTTGGTGGG+TGG + chr1.3:58318600-58318619 MS.gene44083:CDS 55.0%
!! AACGGCAGCGGTTTCAGGTT+CGG - chr1.3:58320498-58320517 None:intergenic 55.0%
!! ACCTGAAACCGCTGCCGTTT+TGG + chr1.3:58320499-58320518 MS.gene44083:CDS 55.0%
!! ATTTTGGCGCGGCACTGTTG+GGG - chr1.3:58321171-58321190 None:intergenic 55.0%
!! CGGTTTCAGGTTCGGATGCT+AGG - chr1.3:58320490-58320509 None:intergenic 55.0%
!! GATTTTGGCGCGGCACTGTT+GGG - chr1.3:58321172-58321191 None:intergenic 55.0%
!! GCCCGTTTGGGTTGTTGACT+GGG + chr1.3:58320004-58320023 MS.gene44083:intron 55.0%
!! TGATTTTGGCGCGGCACTGT+TGG - chr1.3:58321173-58321192 None:intergenic 55.0%
!! TGCCCGTTTGGGTTGTTGAC+TGG + chr1.3:58320003-58320022 MS.gene44083:intron 55.0%
AACTGTCGGCGGCTTTCCGA+TGG + chr1.3:58318564-58318583 MS.gene44083:CDS 60.0%
AAGATGCGGCAGCAGCCCAA+AGG - chr1.3:58320191-58320210 None:intergenic 60.0%
AGAGGCCGAAGTTCCTGTGG+AGG - chr1.3:58321396-58321415 None:intergenic 60.0%
CATCTGTAGCTCGGCCAGCA+GGG - chr1.3:58321211-58321230 None:intergenic 60.0%
CATGATGCTGCTGTCCCTGC+TGG + chr1.3:58321194-58321213 MS.gene44083:CDS 60.0%
CCAGGTCGCCCTTTAGTGCT+CGG + chr1.3:58321425-58321444 MS.gene44083:CDS 60.0%
CCGTAACACAGGCGCGAAGA+TGG - chr1.3:58318635-58318654 None:intergenic 60.0%
CTGTGGAGGAGGAAGCCAGA+AGG - chr1.3:58321382-58321401 None:intergenic 60.0%
GCAGGGAAGCCGAGCACTAA+AGG - chr1.3:58321437-58321456 None:intergenic 60.0%
GCGGCACTGTTGGGGGAATA+GGG - chr1.3:58321163-58321182 None:intergenic 60.0%
GCTAGAGGCCGAAGTTCCTG+TGG - chr1.3:58321399-58321418 None:intergenic 60.0%
GTCATGGACCGTATCTCCCC+TGG + chr1.3:58320727-58320746 MS.gene44083:CDS 60.0%
TTAGTGCTCGGCTTCCCTGC+TGG + chr1.3:58321437-58321456 MS.gene44083:CDS 60.0%
TTGGGCTGCTGCCGCATCTT+GGG + chr1.3:58320191-58320210 MS.gene44083:CDS 60.0%
TTTGGGCTGCTGCCGCATCT+TGG + chr1.3:58320190-58320209 MS.gene44083:CDS 60.0%
! ATTTTCACCGCGCCGCGGTA+AGG + chr1.3:58318660-58318679 MS.gene44083:intron 60.0%
! TTTTGGCGCGGCACTGTTGG+GGG - chr1.3:58321170-58321189 None:intergenic 60.0%
!! CTTCTGGCTTCCTCCTCCAC+AGG + chr1.3:58321380-58321399 MS.gene44083:CDS 60.0%
ACTGTCGATGCCCAGGCGTG+TGG + chr1.3:58318744-58318763 MS.gene44083:intron 65.0%
AGACAACACCGCCGCTGACG+AGG - chr1.3:58319323-58319342 None:intergenic 65.0%
ATGCGGCAGCAGCCCAAAGG+AGG - chr1.3:58320188-58320207 None:intergenic 65.0%
CCGAGCACTAAAGGGCGACC+TGG - chr1.3:58321428-58321447 None:intergenic 65.0%
CGCGGCACTGTTGGGGGAAT+AGG - chr1.3:58321164-58321183 None:intergenic 65.0%
GCATCTGTAGCTCGGCCAGC+AGG - chr1.3:58321212-58321231 None:intergenic 65.0%
GCGACCTGGCAGCAAGCTAG+AGG - chr1.3:58321414-58321433 None:intergenic 65.0%
GGCCGAAGTTCCTGTGGAGG+AGG - chr1.3:58321393-58321412 None:intergenic 65.0%
TGCGGCAGCAGCCCAAAGGA+GGG - chr1.3:58320187-58320206 None:intergenic 65.0%
!! ACACGCCTGGGCATCGACAG+TGG - chr1.3:58318745-58318764 None:intergenic 65.0%
!! TCGGCCTCTAGCTTGCTGCC+AGG + chr1.3:58321407-58321426 MS.gene44083:CDS 65.0%
GCTGCTGCCGCATCTTGGGC+TGG + chr1.3:58320195-58320214 MS.gene44083:CDS 70.0%
GGCAGCAGCCCAAAGGAGGG+TGG - chr1.3:58320184-58320203 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 58318529 58321610 58318529 ID=MS.gene44083
chr1.3 mRNA 58318529 58321610 58318529 ID=MS.gene44083.t1;Parent=MS.gene44083
chr1.3 exon 58318529 58318653 58318529 ID=MS.gene44083.t1.exon1;Parent=MS.gene44083.t1
chr1.3 CDS 58318529 58318653 58318529 ID=cds.MS.gene44083.t1;Parent=MS.gene44083.t1
chr1.3 exon 58318759 58318817 58318759 ID=MS.gene44083.t1.exon2;Parent=MS.gene44083.t1
chr1.3 CDS 58318759 58318817 58318759 ID=cds.MS.gene44083.t1;Parent=MS.gene44083.t1
chr1.3 exon 58320154 58320226 58320154 ID=MS.gene44083.t1.exon3;Parent=MS.gene44083.t1
chr1.3 CDS 58320154 58320226 58320154 ID=cds.MS.gene44083.t1;Parent=MS.gene44083.t1
chr1.3 exon 58320388 58320536 58320388 ID=MS.gene44083.t1.exon4;Parent=MS.gene44083.t1
chr1.3 CDS 58320388 58320536 58320388 ID=cds.MS.gene44083.t1;Parent=MS.gene44083.t1
chr1.3 exon 58320608 58321099 58320608 ID=MS.gene44083.t1.exon5;Parent=MS.gene44083.t1
chr1.3 CDS 58320608 58321099 58320608 ID=cds.MS.gene44083.t1;Parent=MS.gene44083.t1
chr1.3 exon 58321177 58321610 58321177 ID=MS.gene44083.t1.exon6;Parent=MS.gene44083.t1
chr1.3 CDS 58321177 58321610 58321177 ID=cds.MS.gene44083.t1;Parent=MS.gene44083.t1
Gene Sequence

>MS.gene44083

ATGAGTCTCTCCTCCGTACCACCTCCAAATGCAAGAACTGTCGGCGGCTTTCCGATGGTTTTGCGTATGGTTTCGGAAACGTGTTGGTGGGTGGGTTTAACCACCATCTTCGCGCCTGTGTTACGGTGAGTATTTTCACCGCGCCGCGGTAAGGAATATTTCTTGATCTTTATCTCTAATCAGGAACATATTTCTTGTTTCTTTTGATTAAATCCACTGTCGATGCCCAGGCGTGTGGATTGTGTTCTATCTAGTTCCATTGAAACCCCAAGCGGGGTTGTGTTTGTTGGTACGCAGCTGATGTGGATCCAATAAGGATTCACCATGCAAGGATCTTTGACCTAAGTGTAATTTTCTTGAATTGAGATAGAAAATGAAGGAAAATGATAGAAAATCTAAGAAAATTGACCAAACTATGAATAGAAAGAAAATATACAAATGGAATTAGATGAGAAGTGGGAAGAACGATCGCCACATTCAAGATGAACGATAAGATCGAATTGCGGATCCGCCACAAGAATAAGATGCTCTTGATAAGGATCTAGATTTGGTTCATCCAAGAACTTATAAGAGCAATTCTAACTCTCCCTTCAATCAAAAATTGAAAATATCAAATTGTATTCACCTCCTTCAAAATGATAACATGATTGTTATTTATACCTACTCATTGGCCATCACATATAAGGCCAAATAAGGAACTAGAAAAACAAGGAGCATTATACAACTCCAAAATAAAAGTAATACTAAACACTATTACAATTAAAATTCACTAAAGAAAATAACATATTGGTCCTCGTCAGCGGCGGTGTTGTCTTGACTCACGATGGTGTACAAAAAGGTCCGTTGGTTTGTTCGTTTTTAGGTTCCGTTTTAAAACTCGTCGTGGTTTCACTGGTTTCGGTTTTTCAGATCCAGTAATGATTCGCGTGGGGTTCGTTAGGCTCAAGAGGGCTTTTAATGCTTGCTGTGATTTATCCAGGGGCTTATATGGTTCGTAAGCTTTTCCGTGATGGCGGTAGTTCATACACCATACATATTAAAAAATAAGTTTGATTTATTCTGGCTTGTTTCTGGTTCTTTTACACACCTTTTCCTTTGGTGAAATGATGAAATTCAATCTTGTGTCTCGGCTGTGCTTGTATGATAGCTTGTTGTGAGGCAGAAATGGCTGATTAAGCTTATGATCAGTTGGTGTTTGTGGATATGCTAATTACTGTGTTGGCGGTCGAATCCACCCCTACTTTCAAGCATTTGTCCGTGGTTATCCCAACCATCTATTGATTGACATGAGACTGTATGGACTCAAAAGTGTCGTCAATGCTAGTTGTCGTTGTTGCAGGGAGTTGATGGTACGTGAACCGATTTTGTGTTGACAATCGATTCATTCGCCAAACTTTGGACCCGCGTTTAATGTTAGATTTGTTTAGGGTTGGATCCACTTTGTGGATTTTTTATTTTTATTTATTTTTTGTTTTGCCCGTTTGGGTTGTTGACTGGGTCAGGTTTTATGTCCCCCAGTTTTTATGTAATTTTTCCTTTTTTTAATAATATATATGAGCAATTGGCAACCGATTAGAGTAGTGTACCAACATAAAAACAAATTGTCTCTATATATGGTCTCCTAGGGTTTCCACCTCCTAAGGTTTCTAGTGCCACCCTCCTTTGGGCTGCTGCCGCATCTTGGGCTGGATCTTCCTTGTGAGAAGTTGCATCTCATCTGATCCATGATCTAGATGTTTCTATTCCTGCCTATTTATTCATCTGGTTTTCACATACTTGTGATTCATCAAAACCCTAGTTCCTGTAAACCGCTTTCTTCCCTTAGTCTTGCGTCTGTCTCTGGTTCCTTGTTTCCACAGCCATTCCCCTTGTTTTCCCTGCTGTTTCACCGATTCCATGGATCCCACACACCTAAGTCTTGATGGTCTTACCTTGTCAGAGGAGGGTCTAACCCTAAACCTAGCATCCGAACCTGAAACCGCTGCCGTTTTGGAACACTGTCTGATTGGTAGGTTTTGGCTGATCGTGAAATCCAGATTGCCTATTTCAGTGAGCGAATGTCTCGTGCATGGAAGCCAGACAAACGGGTTATGATCACCAAATCTGTGGATGATCGATATCTCTTCCAGTTTCACTATAAGGTAGATGCTGCTCGTGTTTTAGAGGAAGGTCCATGGCTTTACGACAATTTCCATATTGTCATGGACCGTATCTCCCCTGGTACTGTCGCGTCTTTTGTTCCCTTGAATCATATTGATTTTTGGGTTCAGGTTCATGGGCTACCTTTTGGTTTTATCGAGCCTAACGTCGGTCAAGGTATAGGAAGTTTTCTAGGTACATTTTGGGCTTATGATGTCCGTAATTCTATCCATAGTTCCTATATGAGAATCAAAGTGTCAATTGATGTTACTGTCCCACTTAAGAAAGAGTGGCGTGTTCGTGCTAGTAATGGTGAATTTGTGACTGTTAACTTTAAGTATGAAAAACTCGTTGTTTTTTGTCACATGTGTGGAGTTATCGGACATACCGACAAAGTGTGTCCGGAGCTGTTCGAGTTAGAATCAGATGATGGTATTCGCAACTGGGGACCGTATCTAAAACCTGCCCAACAATGCATTGGTACTGCTGCAACCCTATTCCCCCAACAGTGCCGCGCCAAAATCAACATGATGCTGCTGTCCCTGCTGGCCGAGCTACAGATGCTGCTGATACAGGAAAATTGACAACTTTTAATGACCGTATGCTTGCTTTCCAGAACCAACTCACTGCCATGAAACAAGATGTCCTTGCTGCCCAAAATGCAGTGCATGCTAAAAAAGGTAACGGTACTAATTCTGCTTGCAAAGTGCACCTTCTGGCTTCCTCCTCCACAGGAACTTCGGCCTCTAGCTTGCTGCCAGGTCGCCCTTTAGTGCTCGGCTTCCCTGCTGGTCCGTTTGTGACTGAAAACAATGATGAAGTGTACGAGGAAAATGGCTCGGAGCTGAGGAAAATGGCTCGGATCTGGAGAAAAGGAAGCTTATGCTTGCCCTTCAGAATGGAGAACCATTTGATGCTGATGGGGCTTTGGGAAACAATGTAA
Protein sequence

>MS.gene44083.t1

MSLSSVPPPNARTVGGFPMVLRMVSETCWWVGLTTIFAPVLRRVDCVLSSSIETPSGVVFVGFPPPKVSSATLLWAAAASWAGSSFHSPCFPCCFTDSMDPTHLSLDGLTLSEEGLTLNLASEPETAAVLEHCLIDKRVMITKSVDDRYLFQFHYKVDAARVLEEGPWLYDNFHIVMDRISPGTVASFVPLNHIDFWVQVHGLPFGFIEPNVGQGIGSFLGTFWAYDVRNSIHSSYMRIKVSIDVTVPLKKEWRVRASNGEFVTVNFKYEKLVVFCHMCGVIGHTDKVCPELFELESDDVPRQNQHDAAVPAGRATDAADTGKLTTFNDRMLAFQNQLTAMKQDVLAAQNAVHAKKGNGTNSACKVHLLASSSTGTSASSLLPGRPLVLGFPAGPFVTENNDEVYEENGSELRKMARIWRKGSLCLPFRMENHLMLMGLWETM