AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018745

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018745.t1 MTR_6g053230 74.368 554 59 3 113 666 1 471 0.0 726
MS.gene018745.t1 MTR_6g033215 35.780 218 137 2 113 330 80 294 8.57e-42 154
MS.gene018745.t1 MTR_3g024240 45.833 120 63 1 213 330 55 174 1.31e-29 116
MS.gene018745.t1 MTR_0010s0370 37.908 153 95 0 155 307 24 176 2.50e-29 115
MS.gene018745.t1 MTR_0010s0350 37.908 153 95 0 155 307 24 176 2.50e-29 115
MS.gene018745.t1 MTR_0015s0120 68.919 74 23 0 684 757 9 82 2.19e-26 112
MS.gene018745.t1 MTR_3g053920 30.137 146 87 1 159 304 30 160 8.28e-22 96.7
MS.gene018745.t1 MTR_2g061500 34.906 106 69 0 153 258 24 129 2.80e-20 88.2
MS.gene018745.t1 MTR_1g100687 36.283 113 72 0 647 759 115 227 9.57e-20 89.4
MS.gene018745.t1 MTR_8g463110 36.111 108 55 2 657 757 187 287 4.56e-16 82.8
MS.gene018745.t1 MTR_1g036720 40.000 70 42 0 163 232 32 101 6.37e-16 74.7
MS.gene018745.t1 MTR_1g051330 35.922 103 65 1 657 759 342 443 7.13e-15 79.0
MS.gene018745.t1 MTR_4g103530 30.075 133 80 3 184 316 1 120 1.07e-13 70.9
MS.gene018745.t1 MTR_0042s0130 32.787 122 82 0 636 757 205 326 1.43e-13 73.2
MS.gene018745.t1 MTR_6g034215 35.246 122 75 2 640 757 170 291 2.23e-13 72.4
MS.gene018745.t1 MTR_8g468010 46.774 62 33 0 246 307 1 62 1.84e-12 65.9
MS.gene018745.t1 MTR_4g020630 36.893 103 51 2 662 757 128 223 6.52e-12 69.3
MS.gene018745.t1 MTR_1g032270 40.278 72 43 0 229 300 1 72 1.23e-11 63.5
MS.gene018745.t1 MTR_7g011710 32.051 78 53 0 184 261 1 78 3.36e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018745.t1 AT5G25200 22.449 147 112 1 206 352 80 224 4.20e-13 72.0
MS.gene018745.t1 AT2G02103 22.449 147 112 1 206 352 80 224 1.17e-12 70.9
MS.gene018745.t1 AT2G17920 20.619 194 152 1 163 356 37 228 1.21e-12 70.1
MS.gene018745.t1 AT5G18636 22.222 144 110 1 206 349 80 221 1.66e-12 70.1
MS.gene018745.t1 AT3G57587 19.487 195 155 1 158 352 32 224 1.38e-11 67.4
MS.gene018745.t1 AT2G41590 20.000 195 154 1 158 352 32 224 3.13e-11 66.2

Find 197 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGAAGTCTCCTTGAAAT+TGG 0.133921 7.1:+11397656 None:intergenic
AGAAAATGTGAGAGCATTAA+AGG 0.188980 7.1:+11397615 None:intergenic
TATCCCATTGGTGGTAAAAT+TGG 0.223221 7.1:+11397166 None:intergenic
AGGCAACACTCTTCTGTTAT+TGG 0.228345 7.1:+11395041 None:intergenic
CTTTCAAAACTTTGGTGTTC+TGG 0.229037 7.1:-11397234 MS.gene018745:CDS
ACAGATATGACGTTGAAATT+TGG 0.229855 7.1:-11397683 MS.gene018745:CDS
AAAATCCCTCCAAATCTTCT+TGG 0.246895 7.1:+11397588 None:intergenic
TATGATATCAATAATTATTA+TGG 0.263716 7.1:-11396943 MS.gene018745:CDS
GTTGGGATTGCTCAGTCTTA+TGG 0.271802 7.1:-11397534 MS.gene018745:CDS
TTTGTATTGTTCAGATTAAA+AGG 0.277980 7.1:+11396403 None:intergenic
AGCTTTCAAGGTGGGAAATT+AGG 0.278854 7.1:-11397750 MS.gene018745:CDS
GGATGGCCCACGTGATTTAC+AGG 0.285518 7.1:-11396038 MS.gene018745:CDS
TTGCTTGAGCTGTGCGTTGT+TGG 0.290068 7.1:-11397306 MS.gene018745:CDS
CAAATAACTCTCATGCTAAC+AGG 0.291003 7.1:-11396271 MS.gene018745:CDS
TTTCTGAAACCAAGAAGATT+TGG 0.291807 7.1:-11397597 MS.gene018745:CDS
TGTGGATGGTGTGCAACTTT+GGG 0.299218 7.1:-11396722 MS.gene018745:CDS
AAAGTCTCTCCTGCATGAAT+TGG 0.311019 7.1:+11397253 None:intergenic
TTGCTATTGTTGTGGTATCT+TGG 0.318853 7.1:-11396788 MS.gene018745:CDS
ATTATCTGCCTGAGTTGTAC+TGG 0.319258 7.1:+11395931 None:intergenic
TCCTAGATGAGGTTGAAATA+TGG 0.321549 7.1:-11397050 MS.gene018745:CDS
AGGTTAGTCACAAGTGTTAT+TGG 0.332583 7.1:-11396457 MS.gene018745:CDS
CAGGTATTTAATATCCCCTT+TGG 0.335280 7.1:-11397024 MS.gene018745:CDS
ACAAGTGTTATTGGTCCTAA+TGG 0.336479 7.1:-11396448 MS.gene018745:CDS
CAAGTGTTATTGGTCCTAAT+GGG 0.337245 7.1:-11396447 MS.gene018745:CDS
TTGTGGATGGTGTGCAACTT+TGG 0.339267 7.1:-11396723 MS.gene018745:CDS
AAACCAGGTTCTAGTCTCTT+AGG 0.353365 7.1:+11396745 None:intergenic
CAACGACCTGATGCTTTATA+AGG 0.357238 7.1:-11397508 MS.gene018745:CDS
TGCTATTGTTGTGGTATCTT+GGG 0.360693 7.1:-11396787 MS.gene018745:CDS
ACTATCAGAAGGTTAGTTAA+TGG 0.366739 7.1:-11396364 MS.gene018745:CDS
TGCTTGAGCTGTGCGTTGTT+GGG 0.370896 7.1:-11397305 MS.gene018745:CDS
TCCAGCGAGCATGCCCTGTT+TGG 0.371005 7.1:-11396520 MS.gene018745:CDS
ACCATGTGTCTTGTCATTAC+CGG 0.377977 7.1:+11396082 None:intergenic
ACGTCCATGGCCCTTCTTGT+AGG 0.378660 7.1:+11397133 None:intergenic
GAAGGGCCATGGACGTTTGA+TGG 0.379966 7.1:-11397126 MS.gene018745:CDS
GGATTATGGGAGATAGGATC+TGG 0.398688 7.1:-11397788 None:intergenic
GATGGGAGTTTGAGATTGAT+TGG 0.398903 7.1:-11396220 MS.gene018745:CDS
GATATTAATGATTCACCAAA+TGG 0.401579 7.1:-11397366 MS.gene018745:CDS
TATTCCAACTTATCAACAAT+CGG 0.407833 7.1:+11394934 None:intergenic
CGAGTAATTGTTCTGTTGGC+GGG 0.408795 7.1:-11396684 MS.gene018745:CDS
TCCTTTCAATGTGGTGGTGA+TGG 0.410961 7.1:-11396548 MS.gene018745:CDS
GAATCTGCCAGCACCTTCTT+CGG 0.412434 7.1:-11395100 MS.gene018745:CDS
AGATTCTCAAGAACTGCATC+AGG 0.413071 7.1:+11395117 None:intergenic
TCCAAACAGGGCATGCTCGC+TGG 0.414109 7.1:+11396519 None:intergenic
GACGTTTGATGGCTTTCTGC+TGG 0.414361 7.1:-11397115 MS.gene018745:CDS
ATGGCTTTCTGCTGGTGCTT+AGG 0.416822 7.1:-11397107 MS.gene018745:CDS
TTTAATCTAAGAAGATTTGT+TGG 0.417701 7.1:-11397552 MS.gene018745:CDS
TGCTGGACCATTGGTGATAA+GGG 0.421410 7.1:-11396059 MS.gene018745:CDS
CAGCAGATCCCCATCAGTTA+TGG 0.422536 7.1:+11396168 None:intergenic
AATGAAGTCTCCTTGAAATT+GGG 0.423033 7.1:+11397657 None:intergenic
GCATGAGGACCTGACGTATC+TGG 0.425302 7.1:-11396995 MS.gene018745:CDS
TTGAAAGCTCTGTTTGACTT+TGG 0.426071 7.1:+11397764 None:intergenic
CATGGTGGTTGTACTTGAAC+AGG 0.427779 7.1:-11395903 MS.gene018745:CDS
ATAATAGGATTATGGGAGAT+AGG 0.429232 7.1:-11397794 None:intergenic
CCTAGATGAGGTTGAAATAT+GGG 0.432587 7.1:-11397049 MS.gene018745:CDS
AATAATTCAACAGGAAATGA+TGG 0.435562 7.1:-11396238 MS.gene018745:CDS
GGTCGTGGCGGCCGTAATGA+TGG 0.436930 7.1:-11396619 MS.gene018745:CDS
GGGGTGTAACTGTGAATAAA+TGG 0.438050 7.1:-11396663 MS.gene018745:CDS
ATGACAAGACACATGGTTGC+TGG 0.442661 7.1:-11396076 MS.gene018745:CDS
AATACAGGTAATAATTCAAC+AGG 0.444496 7.1:-11396247 MS.gene018745:CDS
AGGAGAGACTTTCAAAACTT+TGG 0.445124 7.1:-11397242 MS.gene018745:CDS
AAAGTCAAACAGAGCTTTCA+AGG 0.451118 7.1:-11397762 MS.gene018745:CDS
ACCATTCCTTATAAAGCATC+AGG 0.452812 7.1:+11397502 None:intergenic
TTAATCTAAGAAGATTTGTT+GGG 0.454784 7.1:-11397551 MS.gene018745:CDS
CTCATGCTAACAGGGAATAC+AGG 0.458584 7.1:-11396262 MS.gene018745:CDS
TACCTCTTCCTCCATCATTA+CGG 0.460920 7.1:+11396608 None:intergenic
TGAACAGGAAGCAAGTGATA+TGG 0.463030 7.1:-11395888 MS.gene018745:CDS
GTTCTCTTCCACCTGATCAA+TGG 0.465167 7.1:+11397200 None:intergenic
AGAGGTACTGGTAGTAGTAA+TGG 0.469577 7.1:-11396592 MS.gene018745:CDS
TTGCCCGATTGTTGATAAGT+TGG 0.471683 7.1:-11394938 MS.gene018745:CDS
ACTGATAAGTGGAGTTCCTA+TGG 0.473400 7.1:-11394964 MS.gene018745:CDS
GTAGTTTCGTCACTGATAAG+TGG 0.473839 7.1:-11394975 MS.gene018745:CDS
CCGAGTAATTGTTCTGTTGG+CGG 0.476801 7.1:-11396685 MS.gene018745:CDS
CCAAGGTGTTACCATTGATC+AGG 0.481589 7.1:-11397211 MS.gene018745:CDS
TATCTGGTTGGATGTCATAT+GGG 0.482617 7.1:-11396979 MS.gene018745:CDS
GTATCTGGTTGGATGTCATA+TGG 0.483917 7.1:-11396980 MS.gene018745:CDS
CTAACCTTCTGATAGTGACT+TGG 0.486538 7.1:+11396371 None:intergenic
CCCATATTTCAACCTCATCT+AGG 0.487659 7.1:+11397049 None:intergenic
TTGCTGGACCATTGGTGATA+AGG 0.487725 7.1:-11396060 MS.gene018745:CDS
AACAGGGCATGCTCGCTGGA+AGG 0.488239 7.1:+11396523 None:intergenic
AGAGTTATTTGCTGATGTGT+TGG 0.488380 7.1:+11396283 None:intergenic
TTCTTTCCATATCCCATTGG+TGG 0.489616 7.1:+11397157 None:intergenic
CTTTCTGCTGGTGCTTAGGA+AGG 0.490101 7.1:-11397103 MS.gene018745:CDS
TCCTCATGCATAAAACCAAA+GGG 0.491411 7.1:+11397009 None:intergenic
CTGAAACCAAGAAGATTTGG+AGG 0.491482 7.1:-11397594 MS.gene018745:CDS
AGTTAAAATCATACGTGGTA+GGG 0.493546 7.1:-11396494 MS.gene018745:CDS
GGATTCTTTCCATATCCCAT+TGG 0.495245 7.1:+11397154 None:intergenic
GGTAAAGCAAAAGAAGCATC+TGG 0.500747 7.1:-11395980 MS.gene018745:CDS
GGCCGTAATGATGGAGGAAG+AGG 0.501252 7.1:-11396610 MS.gene018745:CDS
GATCCAGCTGAGGATCCATT+TGG 0.501372 7.1:+11397351 None:intergenic
CTTGCGCACATCACCCGCCC+TGG 0.503993 7.1:+11396115 None:intergenic
GAGTTAAAATCATACGTGGT+AGG 0.506824 7.1:-11396495 MS.gene018745:CDS
GAGTTATTTGCTGATGTGTT+GGG 0.507288 7.1:+11396284 None:intergenic
CTGAATTCTCCATAACTGAT+GGG 0.508969 7.1:-11396177 MS.gene018745:CDS
AATCCGAGTAATTGTTCTGT+TGG 0.509128 7.1:-11396688 MS.gene018745:CDS
CCTTTCAATGTGGTGGTGAT+GGG 0.511010 7.1:-11396547 MS.gene018745:CDS
TCACCAAATGGATCCTCAGC+TGG 0.512682 7.1:-11397354 MS.gene018745:CDS
CTGCTGAATGAAGGAGATGT+TGG 0.512772 7.1:-11396151 MS.gene018745:CDS
AATTTGGCATCCCAATTTCA+AGG 0.513224 7.1:-11397667 MS.gene018745:CDS
AATGATGGAGGAAGAGGTAC+TGG 0.522470 7.1:-11396604 MS.gene018745:CDS
GTGCGCAAGTAAGAAGAAAC+CGG 0.524494 7.1:-11396101 MS.gene018745:CDS
GGTGGTAGAATGGCTGGTCG+TGG 0.524757 7.1:-11396634 MS.gene018745:CDS
AAACTTTGGTGTTCTGGCCA+AGG 0.525385 7.1:-11397228 MS.gene018745:CDS
TCTGAATTCTCCATAACTGA+TGG 0.525833 7.1:-11396178 MS.gene018745:CDS
ACCTGATGCTTTATAAGGAA+TGG 0.526263 7.1:-11397503 MS.gene018745:CDS
GGTTCAAATTTGAGAACGCC+TGG 0.526759 7.1:-11395017 MS.gene018745:CDS
ACAGGGCATGCTCGCTGGAA+GGG 0.527776 7.1:+11396524 None:intergenic
TGAGGTTGAAATATGGGCTC+AGG 0.527998 7.1:-11397043 MS.gene018745:CDS
CAGAAGGTTAGTTAATGGTA+TGG 0.529188 7.1:-11396359 MS.gene018745:CDS
ATTCCAACTTATCAACAATC+GGG 0.530661 7.1:+11394935 None:intergenic
TCATTTAAATACGAGAAACT+TGG 0.531812 7.1:-11396817 MS.gene018745:CDS
GTTAAAATCATACGTGGTAG+GGG 0.532566 7.1:-11396493 MS.gene018745:CDS
CCCATCACCACCACATTGAA+AGG 0.534754 7.1:+11396547 None:intergenic
GCCAGAAAATTGATAGAATG+AGG 0.544240 7.1:-11394840 MS.gene018745:CDS
GGAAGCAAGTGATATGGTGC+TGG 0.545419 7.1:-11395882 MS.gene018745:CDS
AGTGACGAAACTACTAAAGT+CGG 0.548068 7.1:+11394984 None:intergenic
ATCCTCTGATTTGTCACAAG+AGG 0.548440 7.1:-11397331 MS.gene018745:CDS
AAAGTCGGGATCAGCTAACC+AGG 0.551684 7.1:+11394999 None:intergenic
ACAAACTTCTGAACCAGGGC+GGG 0.552013 7.1:-11396128 MS.gene018745:CDS
GATGGGGATCTGCTGAATGA+AGG 0.554620 7.1:-11396160 MS.gene018745:CDS
TAGTGATCCGAAGAAGGTGC+TGG 0.554743 7.1:+11395093 None:intergenic
ACACAAAATACACAATATGA+AGG 0.556147 7.1:-11396007 MS.gene018745:CDS
GTGACGAAACTACTAAAGTC+GGG 0.557722 7.1:+11394985 None:intergenic
TTGCGTGGTGGTAGAATGGC+TGG 0.557858 7.1:-11396640 MS.gene018745:CDS
GTCCTCATGCATAAAACCAA+AGG 0.562425 7.1:+11397008 None:intergenic
AGTAATTGTTCTGTTGGCGG+GGG 0.562575 7.1:-11396682 MS.gene018745:CDS
AATACACAATATGAAGGTAA+AGG 0.562950 7.1:-11396001 MS.gene018745:CDS
GAATCCTACAAGAAGGGCCA+TGG 0.564204 7.1:-11397137 MS.gene018745:CDS
ACACATGGTTGCTGGACCAT+TGG 0.564785 7.1:-11396068 MS.gene018745:CDS
ATGGTTGCGTGGTGGTAGAA+TGG 0.566503 7.1:-11396644 MS.gene018745:CDS
ATGGAAAGAATCCTACAAGA+AGG 0.567132 7.1:-11397144 MS.gene018745:CDS
GAGTAATTGTTCTGTTGGCG+GGG 0.569786 7.1:-11396683 MS.gene018745:CDS
TCAAACAGAGCTTTCAAGGT+GGG 0.573440 7.1:-11397758 MS.gene018745:CDS
GCGTTTCTGATCTAACAGAC+TGG 0.574430 7.1:-11394909 MS.gene018745:CDS
GACATCCAACCAGATACGTC+AGG 0.576341 7.1:+11396986 None:intergenic
AAATAACTCTCATGCTAACA+GGG 0.576389 7.1:-11396270 MS.gene018745:CDS
TTATCTGCCTGAGTTGTACT+GGG 0.577157 7.1:+11395932 None:intergenic
ATAATTCAACAGGAAATGAT+GGG 0.577387 7.1:-11396237 MS.gene018745:CDS
GTGGATGGTGTGCAACTTTG+GGG 0.578412 7.1:-11396721 MS.gene018745:CDS
TGCACACCATCCACAAAACC+AGG 0.582135 7.1:+11396730 None:intergenic
ATAGCGTAGTGATCCGAAGA+AGG 0.589905 7.1:+11395087 None:intergenic
ATGGTGTTCGAGCAAGAAGA+TGG 0.591811 7.1:-11396856 MS.gene018745:CDS
TGGAAAGAATCCTACAAGAA+GGG 0.593481 7.1:-11397143 MS.gene018745:CDS
TGAAACCAAGAAGATTTGGA+GGG 0.594774 7.1:-11397593 MS.gene018745:CDS
AAGTGTTATTGGTCCTAATG+GGG 0.597553 7.1:-11396446 MS.gene018745:CDS
GGGCCATCCCTTATCACCAA+TGG 0.597570 7.1:+11396052 None:intergenic
GGTGCGGTTCCAATTCATGC+AGG 0.598898 7.1:-11397262 MS.gene018745:CDS
TGCATGAATTGGAACCGCAC+CGG 0.602172 7.1:+11397264 None:intergenic
CCGCCAACAGAACAATTACT+CGG 0.602315 7.1:+11396685 None:intergenic
GTTGGACAAACTTCTGAACC+AGG 0.604759 7.1:-11396133 MS.gene018745:CDS
AGAATTCAGAATTAGTCACT+TGG 0.604766 7.1:+11396191 None:intergenic
AGGTGTTACCATTGATCAGG+TGG 0.605058 7.1:-11397208 MS.gene018745:CDS
AGAAAGCCATCAAACGTCCA+TGG 0.608192 7.1:+11397120 None:intergenic
AACAATCGGGCAAACTCCAT+AGG 0.614031 7.1:+11394948 None:intergenic
TCAGGCAGATAATGTAAGCA+TGG 0.614467 7.1:-11395921 MS.gene018745:CDS
ATCTGGTTGGATGTCATATG+GGG 0.614751 7.1:-11396978 MS.gene018745:CDS
GATGTACATGCGTATTTGTG+TGG 0.616121 7.1:-11396911 MS.gene018745:CDS
ATGGCTGCTGCTAATGCTAG+AGG 0.618657 7.1:-11396340 MS.gene018745:CDS
CCTGATCAATGGTAACACCT+TGG 0.619987 7.1:+11397211 None:intergenic
AAAACCAAGTCACTATCAGA+AGG 0.622056 7.1:-11396375 MS.gene018745:CDS
TGAATTCTCCATAACTGATG+GGG 0.622992 7.1:-11396176 MS.gene018745:CDS
ATAACAGAAGAGTGTTGCCT+CGG 0.624082 7.1:-11395038 MS.gene018745:CDS
GGTGTTGCTGATGTTAATGA+AGG 0.624182 7.1:-11396571 MS.gene018745:CDS
AATTCGACCCAGTACAACTC+AGG 0.625472 7.1:-11395939 MS.gene018745:CDS
TGAAGGTCCTTTCAATGTGG+TGG 0.626039 7.1:-11396554 MS.gene018745:CDS
GATTATGGGAGATAGGATCT+GGG 0.626603 7.1:-11397787 None:intergenic
GGTAGAATGGCTGGTCGTGG+CGG 0.627579 7.1:-11396631 MS.gene018745:CDS
GTGCTGGACTATGTGAATGA+AGG 0.628206 7.1:-11395866 MS.gene018745:CDS
TGAGCTGCTGAAGACATGTA+TGG 0.632042 7.1:-11396875 MS.gene018745:CDS
GAAGCTGTTGACTGACAAGC+CGG 0.633439 7.1:-11397283 MS.gene018745:CDS
GGACCATTGGTGATAAGGGA+TGG 0.635357 7.1:-11396055 MS.gene018745:CDS
TGCACAACCTGTAAATCACG+TGG 0.636937 7.1:+11396031 None:intergenic
AATACGCATGTACATCCGCA+AGG 0.637261 7.1:+11396918 None:intergenic
CGTGGCGGCCGTAATGATGG+AGG 0.642826 7.1:-11396616 MS.gene018745:CDS
GAGGACCTGACGTATCTGGT+TGG 0.649747 7.1:-11396991 MS.gene018745:CDS
GTGCTTAGGAAGGTCAACAT+TGG 0.651292 7.1:-11397093 MS.gene018745:CDS
AGCCTCTTGTGACAAATCAG+AGG 0.651641 7.1:+11397329 None:intergenic
GCGTTCTCAAATTTGAACCG+AGG 0.653882 7.1:+11395021 None:intergenic
TGTCCTAAGAGACTAGAACC+TGG 0.654149 7.1:-11396748 MS.gene018745:CDS
ATAATTATTATGGACCCTTG+CGG 0.655046 7.1:-11396933 MS.gene018745:CDS
TGCTGACACAGTCCTAGATG+AGG 0.664295 7.1:-11397061 MS.gene018745:CDS
GATTCTCAAGAACTGCATCA+GGG 0.668008 7.1:+11395118 None:intergenic
CAAATCAGAGGATCCAGCTG+AGG 0.676637 7.1:+11397341 None:intergenic
GTGTTGTGTCACATTTACCA+TGG 0.676986 7.1:-11397403 MS.gene018745:CDS
TGTTGACTGACAAGCCGGTG+CGG 0.678517 7.1:-11397278 MS.gene018745:CDS
AGTGTTATTGGTCCTAATGG+GGG 0.680741 7.1:-11396445 MS.gene018745:CDS
ATACGCATGTACATCCGCAA+GGG 0.682603 7.1:+11396919 None:intergenic
GACAAACTTCTGAACCAGGG+CGG 0.683804 7.1:-11396129 MS.gene018745:CDS
GTCAAACAGAGCTTTCAAGG+TGG 0.683892 7.1:-11397759 MS.gene018745:CDS
ACCGGTAATGACAAGACACA+TGG 0.693059 7.1:-11396083 MS.gene018745:CDS
GTGAATAAATGGTTGCGTGG+TGG 0.701823 7.1:-11396652 MS.gene018745:CDS
TTGGACAAACTTCTGAACCA+GGG 0.708223 7.1:-11396132 MS.gene018745:CDS
GGCAGATAATGTAAGCATGG+TGG 0.710213 7.1:-11395918 MS.gene018745:CDS
GGAAGAGTTAAAATCATACG+TGG 0.712787 7.1:-11396499 MS.gene018745:CDS
ACTGTGAATAAATGGTTGCG+TGG 0.719427 7.1:-11396655 MS.gene018745:CDS
CCTCATGCATAAAACCAAAG+GGG 0.728043 7.1:+11397010 None:intergenic
GCACAACCTGTAAATCACGT+GGG 0.763972 7.1:+11396032 None:intergenic
TAATGAAGGTCCTTTCAATG+TGG 0.766457 7.1:-11396557 MS.gene018745:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATATCAATAATTATTA+TGG - chr7.1:11395396-11395415 MS.gene018745:intron 10.0%
!! AAATAATTAGTTGGAATTGT+AGG - chr7.1:11396599-11396618 MS.gene018745:CDS 20.0%
!! AATAATTAGTTGGAATTGTA+GGG - chr7.1:11396600-11396619 MS.gene018745:CDS 20.0%
!! ACAATTGTTTCAGTAAATAA+AGG + chr7.1:11396539-11396558 None:intergenic 20.0%
!! ATTTACTGAAACAATTGTAA+TGG - chr7.1:11396541-11396560 MS.gene018745:CDS 20.0%
!! CAATTGTTTCAGTAAATAAA+GGG + chr7.1:11396538-11396557 None:intergenic 20.0%
!! TTTAATCTAAGAAGATTTGT+TGG - chr7.1:11394787-11394806 MS.gene018745:intron 20.0%
!! TTTGTATTGTTCAGATTAAA+AGG + chr7.1:11395939-11395958 None:intergenic 20.0%
!!! ATTCCAACTAATTATTTTCA+TGG + chr7.1:11396596-11396615 None:intergenic 20.0%
!!! ATTTTAAACTAGGAATTGTA+CGG + chr7.1:11396639-11396658 None:intergenic 20.0%
!!! TTAATCTAAGAAGATTTGTT+GGG - chr7.1:11394788-11394807 MS.gene018745:intron 20.0%
!!! TTATTTTGTTGATTTGTTTC+AGG - chr7.1:11397773-11397792 MS.gene018745:CDS 20.0%
! AAAAGAAGGGTAATAATGAA+AGG - chr7.1:11397031-11397050 MS.gene018745:CDS 25.0%
! AAAGAAGGGTAATAATGAAA+GGG - chr7.1:11397032-11397051 MS.gene018745:CDS 25.0%
! AATAATTCAACAGGAAATGA+TGG - chr7.1:11396101-11396120 MS.gene018745:CDS 25.0%
! AATACACAATATGAAGGTAA+AGG - chr7.1:11396338-11396357 MS.gene018745:CDS 25.0%
! AATACAGGTAATAATTCAAC+AGG - chr7.1:11396092-11396111 MS.gene018745:CDS 25.0%
! ACACAAAATACACAATATGA+AGG - chr7.1:11396332-11396351 MS.gene018745:CDS 25.0%
! ATAATTAGTTGGAATTGTAG+GGG - chr7.1:11396601-11396620 MS.gene018745:CDS 25.0%
! ATAATTCAACAGGAAATGAT+GGG - chr7.1:11396102-11396121 MS.gene018745:CDS 25.0%
! GAGATAACAGATACTAATAA+AGG - chr7.1:11396865-11396884 MS.gene018745:CDS 25.0%
! GATATTAATGATTCACCAAA+TGG - chr7.1:11394973-11394992 MS.gene018745:CDS 25.0%
! TAACAAAATTCATTCGTTGT+TGG - chr7.1:11397695-11397714 MS.gene018745:CDS 25.0%
! TATACATGGTTTAAAAGTCT+TGG - chr7.1:11397132-11397151 MS.gene018745:CDS 25.0%
! TATTCCAACTTATCAACAAT+CGG + chr7.1:11397408-11397427 None:intergenic 25.0%
! TCATTTAAATACGAGAAACT+TGG - chr7.1:11395522-11395541 MS.gene018745:intron 25.0%
! TTCATCAGTTTAATGAATTG+AGG - chr7.1:11397544-11397563 MS.gene018745:CDS 25.0%
!! ATCAACATTGAAATTTTCCA+TGG + chr7.1:11394956-11394975 None:intergenic 25.0%
!! CGCAATTTTCAAATATTCAA+TGG - chr7.1:11394617-11394636 MS.gene018745:intron 25.0%
!! CTCTAAAAGTAATAAAACTG+AGG - chr7.1:11396708-11396727 MS.gene018745:CDS 25.0%
!! GACTTTTAAACCATGTATAA+AGG + chr7.1:11397131-11397150 None:intergenic 25.0%
!! TGTTTTACTGTGAATAAACA+AGG - chr7.1:11396760-11396779 MS.gene018745:CDS 25.0%
!! TTTTAAACTAGGAATTGTAC+GGG + chr7.1:11396638-11396657 None:intergenic 25.0%
!!! ATTGATTTTCATCAGTAATC+CGG + chr7.1:11397734-11397753 None:intergenic 25.0%
AAATAACTCTCATGCTAACA+GGG - chr7.1:11396069-11396088 MS.gene018745:CDS 30.0%
AATGAAGTCTCCTTGAAATT+GGG + chr7.1:11394685-11394704 None:intergenic 30.0%
AATTTACCGTGGTGTATAAT+AGG - chr7.1:11396979-11396998 MS.gene018745:CDS 30.0%
ACAGATATGACGTTGAAATT+TGG - chr7.1:11394656-11394675 MS.gene018745:intron 30.0%
AGAATTCAGAATTAGTCACT+TGG + chr7.1:11396151-11396170 None:intergenic 30.0%
AGATAGTTTCACAAAGATAG+AGG + chr7.1:11396690-11396709 None:intergenic 30.0%
AGTTAAAATCATACGTGGTA+GGG - chr7.1:11395845-11395864 MS.gene018745:CDS 30.0%
ATAATTATTATGGACCCTTG+CGG - chr7.1:11395406-11395425 MS.gene018745:intron 30.0%
ATTCCAACTTATCAACAATC+GGG + chr7.1:11397407-11397426 None:intergenic 30.0%
ATTTACCGTGGTGTATAATA+GGG - chr7.1:11396980-11396999 MS.gene018745:CDS 30.0%
CAAATGTTTCAAATTTACCG+TGG - chr7.1:11396968-11396987 MS.gene018745:CDS 30.0%
CAGATACTAATAAAGGTAAG+TGG - chr7.1:11396872-11396891 MS.gene018745:CDS 30.0%
CAGCCATGAAAATAATTAGT+TGG - chr7.1:11396590-11396609 MS.gene018745:CDS 30.0%
CATGGAAGAACTTAGTATTA+AGG + chr7.1:11397650-11397669 None:intergenic 30.0%
TAATGAAGTCTCCTTGAAAT+TGG + chr7.1:11394686-11394705 None:intergenic 30.0%
TAATTAGTTGGAATTGTAGG+GGG - chr7.1:11396602-11396621 MS.gene018745:CDS 30.0%
TACTGAAACAATTGTAATGG+CGG - chr7.1:11396544-11396563 MS.gene018745:CDS 30.0%
TCCCTAATAATAACAGAAGA+CGG - chr7.1:11396917-11396936 MS.gene018745:CDS 30.0%
TTTAAACTAGGAATTGTACG+GGG + chr7.1:11396637-11396656 None:intergenic 30.0%
! ACTATCAGAAGGTTAGTTAA+TGG - chr7.1:11395975-11395994 MS.gene018745:CDS 30.0%
! AGGAACTAAAGTATGTTTTG+GGG - chr7.1:11396728-11396747 MS.gene018745:CDS 30.0%
! ATTCCAATTTTACCACCAAT+GGG - chr7.1:11395170-11395189 MS.gene018745:intron 30.0%
! GAGGAACTAAAGTATGTTTT+GGG - chr7.1:11396727-11396746 MS.gene018745:CDS 30.0%
! TAATTCAAGAGGATGCTTTT+TGG - chr7.1:11397586-11397605 MS.gene018745:CDS 30.0%
! TATTCCAATTTTACCACCAA+TGG - chr7.1:11395169-11395188 MS.gene018745:intron 30.0%
! TCCTCATTCTATCAATTTTC+TGG + chr7.1:11397503-11397522 None:intergenic 30.0%
! TGAGGAACTAAAGTATGTTT+TGG - chr7.1:11396726-11396745 MS.gene018745:CDS 30.0%
! TGTTTTATACTGGAATTCGT+CGG - chr7.1:11396798-11396817 MS.gene018745:CDS 30.0%
! TTATTACCCTTCTTTTCATG+AGG + chr7.1:11397027-11397046 None:intergenic 30.0%
!! AGAAAATGTGAGAGCATTAA+AGG + chr7.1:11394727-11394746 None:intergenic 30.0%
!! CAGACAAGGTATTTTAAACT+AGG + chr7.1:11396649-11396668 None:intergenic 30.0%
!! TTTCTGAAACCAAGAAGATT+TGG - chr7.1:11394742-11394761 MS.gene018745:intron 30.0%
!!! GATTTTAACTCTTCCAAACA+GGG + chr7.1:11395835-11395854 None:intergenic 30.0%
!!! TGATTTTAACTCTTCCAAAC+AGG + chr7.1:11395836-11395855 None:intergenic 30.0%
AAAACCAAGTCACTATCAGA+AGG - chr7.1:11395964-11395983 MS.gene018745:CDS 35.0%
AAAATCCCTCCAAATCTTCT+TGG + chr7.1:11394754-11394773 None:intergenic 35.0%
AAAGTCAAACAGAGCTTTCA+AGG - chr7.1:11394577-11394596 MS.gene018745:intron 35.0%
AATCCGAGTAATTGTTCTGT+TGG - chr7.1:11395651-11395670 MS.gene018745:intron 35.0%
AATTGATAGAATGAGGAGTC+AGG - chr7.1:11397506-11397525 MS.gene018745:CDS 35.0%
AATTTGGCATCCCAATTTCA+AGG - chr7.1:11394672-11394691 MS.gene018745:intron 35.0%
ACCTGATGCTTTATAAGGAA+TGG - chr7.1:11394836-11394855 MS.gene018745:intron 35.0%
AGGAGAGACTTTCAAAACTT+TGG - chr7.1:11395097-11395116 MS.gene018745:CDS 35.0%
AGTGACGAAACTACTAAAGT+CGG + chr7.1:11397358-11397377 None:intergenic 35.0%
ATGGAAAGAATCCTACAAGA+AGG - chr7.1:11395195-11395214 MS.gene018745:intron 35.0%
CAAATAACTCTCATGCTAAC+AGG - chr7.1:11396068-11396087 MS.gene018745:CDS 35.0%
CAGAAGGTTACCTTTATACA+TGG - chr7.1:11397118-11397137 MS.gene018745:CDS 35.0%
CAGGTATTTAATATCCCCTT+TGG - chr7.1:11395315-11395334 MS.gene018745:intron 35.0%
CCCGTCTTCTGTTATTATTA+GGG + chr7.1:11396921-11396940 None:intergenic 35.0%
CCCTAATAATAACAGAAGAC+GGG - chr7.1:11396918-11396937 MS.gene018745:CDS 35.0%
CCTAGATGAGGTTGAAATAT+GGG - chr7.1:11395290-11395309 MS.gene018745:intron 35.0%
CCTTGTCTGTGTTTATAAAC+CGG - chr7.1:11396660-11396679 MS.gene018745:CDS 35.0%
CTGAATTCTCCATAACTGAT+GGG - chr7.1:11396162-11396181 MS.gene018745:CDS 35.0%
CTTTCTCCTCATGAAAAGAA+GGG - chr7.1:11397018-11397037 MS.gene018745:CDS 35.0%
GAGTTAAAATCATACGTGGT+AGG - chr7.1:11395844-11395863 MS.gene018745:CDS 35.0%
GCCAGAAAATTGATAGAATG+AGG - chr7.1:11397499-11397518 MS.gene018745:CDS 35.0%
GGAAGAGTTAAAATCATACG+TGG - chr7.1:11395840-11395859 MS.gene018745:intron 35.0%
GTAATAATGAAAGGGCGAAT+TGG - chr7.1:11397040-11397059 MS.gene018745:CDS 35.0%
GTTAAAATCATACGTGGTAG+GGG - chr7.1:11395846-11395865 MS.gene018745:CDS 35.0%
TAATAATAACAGAAGACGGG+AGG - chr7.1:11396921-11396940 MS.gene018745:CDS 35.0%
TAATGAAGGTCCTTTCAATG+TGG - chr7.1:11395782-11395801 MS.gene018745:intron 35.0%
TATCTGGTTGGATGTCATAT+GGG - chr7.1:11395360-11395379 MS.gene018745:intron 35.0%
TCACAAAGATAGAGGATATC+CGG + chr7.1:11396682-11396701 None:intergenic 35.0%
TCCCGTCTTCTGTTATTATT+AGG + chr7.1:11396922-11396941 None:intergenic 35.0%
TCCTAGATGAGGTTGAAATA+TGG - chr7.1:11395289-11395308 MS.gene018745:intron 35.0%
TCCTCATGCATAAAACCAAA+GGG + chr7.1:11395333-11395352 None:intergenic 35.0%
TCTGAATTCTCCATAACTGA+TGG - chr7.1:11396161-11396180 MS.gene018745:CDS 35.0%
TCTTTCTCCTCATGAAAAGA+AGG - chr7.1:11397017-11397036 MS.gene018745:CDS 35.0%
TGAAACCAAGAAGATTTGGA+GGG - chr7.1:11394746-11394765 MS.gene018745:intron 35.0%
TGAATTCTCCATAACTGATG+GGG - chr7.1:11396163-11396182 MS.gene018745:CDS 35.0%
TGCTATTGTTGTGGTATCTT+GGG - chr7.1:11395552-11395571 MS.gene018745:intron 35.0%
TGGAAAGAATCCTACAAGAA+GGG - chr7.1:11395196-11395215 MS.gene018745:intron 35.0%
TTTACCGTGGTGTATAATAG+GGG - chr7.1:11396981-11397000 MS.gene018745:CDS 35.0%
! AAGTGTTATTGGTCCTAATG+GGG - chr7.1:11395893-11395912 MS.gene018745:CDS 35.0%
! ACAAGTGTTATTGGTCCTAA+TGG - chr7.1:11395891-11395910 MS.gene018745:CDS 35.0%
! ACCATTCCTTATAAAGCATC+AGG + chr7.1:11394840-11394859 None:intergenic 35.0%
! AGAAATGCTGTTTGTGATTC+TGG - chr7.1:11397078-11397097 MS.gene018745:CDS 35.0%
! AGAGTTATTTGCTGATGTGT+TGG + chr7.1:11396059-11396078 None:intergenic 35.0%
! AGGTTAGTCACAAGTGTTAT+TGG - chr7.1:11395882-11395901 MS.gene018745:CDS 35.0%
! ATTTTACCACCAATGGGATA+TGG - chr7.1:11395176-11395195 MS.gene018745:intron 35.0%
! CAAGTGTTATTGGTCCTAAT+GGG - chr7.1:11395892-11395911 MS.gene018745:CDS 35.0%
! CAGAAGGTTAGTTAATGGTA+TGG - chr7.1:11395980-11395999 MS.gene018745:CDS 35.0%
! CTAATTATTTTCATGGCTGC+TGG + chr7.1:11396589-11396608 None:intergenic 35.0%
! GAGTTATTTGCTGATGTGTT+GGG + chr7.1:11396058-11396077 None:intergenic 35.0%
! TATCCCATTGGTGGTAAAAT+TGG + chr7.1:11395176-11395195 None:intergenic 35.0%
! TTGAAAGCTCTGTTTGACTT+TGG + chr7.1:11394578-11394597 None:intergenic 35.0%
! TTGCTATTGTTGTGGTATCT+TGG - chr7.1:11395551-11395570 MS.gene018745:intron 35.0%
!! CTTTCAAAACTTTGGTGTTC+TGG - chr7.1:11395105-11395124 MS.gene018745:CDS 35.0%
!! GAATTCTCTTTTTCACAGCA+GGG + chr7.1:11396385-11396404 None:intergenic 35.0%
!!! GGTGTATTTTGCTATTGTTG+TGG - chr7.1:11395543-11395562 MS.gene018745:intron 35.0%
AAAGTCTCTCCTGCATGAAT+TGG + chr7.1:11395089-11395108 None:intergenic 40.0%
AAGTCCCCTATTATACACCA+CGG + chr7.1:11396988-11397007 None:intergenic 40.0%
AATAAACAAGGTCAGAGTGG+TGG - chr7.1:11396772-11396791 MS.gene018745:CDS 40.0%
ACCATGTGTCTTGTCATTAC+CGG + chr7.1:11396260-11396279 None:intergenic 40.0%
ACTGATAAGTGGAGTTCCTA+TGG - chr7.1:11397375-11397394 MS.gene018745:CDS 40.0%
ACTGTGAATAAATGGTTGCG+TGG - chr7.1:11395684-11395703 MS.gene018745:intron 40.0%
AGATTCTCAAGAACTGCATC+AGG + chr7.1:11397225-11397244 None:intergenic 40.0%
AGCTTTCAAGGTGGGAAATT+AGG - chr7.1:11394589-11394608 MS.gene018745:intron 40.0%
AGGCAACACTCTTCTGTTAT+TGG + chr7.1:11397301-11397320 None:intergenic 40.0%
ATCTGGTTGGATGTCATATG+GGG - chr7.1:11395361-11395380 MS.gene018745:intron 40.0%
ATTATCTGCCTGAGTTGTAC+TGG + chr7.1:11396411-11396430 None:intergenic 40.0%
CAACGACCTGATGCTTTATA+AGG - chr7.1:11394831-11394850 MS.gene018745:intron 40.0%
CCCATATTTCAACCTCATCT+AGG + chr7.1:11395293-11395312 None:intergenic 40.0%
CCGGTTTATAAACACAGACA+AGG + chr7.1:11396663-11396682 None:intergenic 40.0%
CCTCATGCATAAAACCAAAG+GGG + chr7.1:11395332-11395351 None:intergenic 40.0%
CTGAAACCAAGAAGATTTGG+AGG - chr7.1:11394745-11394764 MS.gene018745:intron 40.0%
GACTCAGCTGTTAATTCAAG+AGG - chr7.1:11397575-11397594 MS.gene018745:CDS 40.0%
GATGTACATGCGTATTTGTG+TGG - chr7.1:11395428-11395447 MS.gene018745:intron 40.0%
GATTCTCAAGAACTGCATCA+GGG + chr7.1:11397224-11397243 None:intergenic 40.0%
GGATTCTTTCCATATCCCAT+TGG + chr7.1:11395188-11395207 None:intergenic 40.0%
GGGGTGTAACTGTGAATAAA+TGG - chr7.1:11395676-11395695 MS.gene018745:intron 40.0%
GTAGTTTCGTCACTGATAAG+TGG - chr7.1:11397364-11397383 MS.gene018745:CDS 40.0%
GTATCTGGTTGGATGTCATA+TGG - chr7.1:11395359-11395378 MS.gene018745:intron 40.0%
GTCCTCATGCATAAAACCAA+AGG + chr7.1:11395334-11395353 None:intergenic 40.0%
GTGAATAAACAAGGTCAGAG+TGG - chr7.1:11396769-11396788 MS.gene018745:CDS 40.0%
GTGACGAAACTACTAAAGTC+GGG + chr7.1:11397357-11397376 None:intergenic 40.0%
GTGTTGTGTCACATTTACCA+TGG - chr7.1:11394936-11394955 MS.gene018745:CDS 40.0%
TACCTCTTCCTCCATCATTA+CGG + chr7.1:11395734-11395753 None:intergenic 40.0%
TACTAAGTTCTTCCATGCTG+CGG - chr7.1:11397653-11397672 MS.gene018745:CDS 40.0%
TCAAACAGAGCTTTCAAGGT+GGG - chr7.1:11394581-11394600 MS.gene018745:intron 40.0%
TCAGGCAGATAATGTAAGCA+TGG - chr7.1:11396418-11396437 MS.gene018745:CDS 40.0%
TCAGTAATCCGGTTGTTATC+TGG + chr7.1:11397723-11397742 None:intergenic 40.0%
TGAAACAATTGTAATGGCGG+AGG - chr7.1:11396547-11396566 MS.gene018745:CDS 40.0%
TGAACAGGAAGCAAGTGATA+TGG - chr7.1:11396451-11396470 MS.gene018745:CDS 40.0%
TGGCGTCTTACTGGATATTA+TGG - chr7.1:11396892-11396911 MS.gene018745:CDS 40.0%
TGTTGGATCCAGATAACAAC+CGG - chr7.1:11397712-11397731 MS.gene018745:CDS 40.0%
TTATCTGCCTGAGTTGTACT+GGG + chr7.1:11396410-11396429 None:intergenic 40.0%
TTCTTTCCATATCCCATTGG+TGG + chr7.1:11395185-11395204 None:intergenic 40.0%
TTGGACAAACTTCTGAACCA+GGG - chr7.1:11396207-11396226 MS.gene018745:CDS 40.0%
! AAACCAGGTTCTAGTCTCTT+AGG + chr7.1:11395597-11395616 None:intergenic 40.0%
! AGTGTTATTGGTCCTAATGG+GGG - chr7.1:11395894-11395913 MS.gene018745:CDS 40.0%
! ATCCTCTGATTTGTCACAAG+AGG - chr7.1:11395008-11395027 MS.gene018745:CDS 40.0%
! CTAACCTTCTGATAGTGACT+TGG + chr7.1:11395971-11395990 None:intergenic 40.0%
! GATGGGAGTTTGAGATTGAT+TGG - chr7.1:11396119-11396138 MS.gene018745:CDS 40.0%
! TTGCCCGATTGTTGATAAGT+TGG - chr7.1:11397401-11397420 MS.gene018745:CDS 40.0%
!! AGAGGTACTGGTAGTAGTAA+TGG - chr7.1:11395747-11395766 MS.gene018745:intron 40.0%
!! ATAACAGAAGAGTGTTGCCT+CGG - chr7.1:11397301-11397320 MS.gene018745:CDS 40.0%
!! CGAATTCTCTTTTTCACAGC+AGG + chr7.1:11396386-11396405 None:intergenic 40.0%
!! GGTAAAGCAAAAGAAGCATC+TGG - chr7.1:11396359-11396378 MS.gene018745:CDS 40.0%
!! GGTGTTGCTGATGTTAATGA+AGG - chr7.1:11395768-11395787 MS.gene018745:intron 40.0%
!!! GTGGTGGTCTTGTTTTATAC+TGG - chr7.1:11396788-11396807 MS.gene018745:CDS 40.0%
AAAGGTAAGTGGCGTCTTAC+TGG - chr7.1:11396883-11396902 MS.gene018745:CDS 45.0%
AACAATCGGGCAAACTCCAT+AGG + chr7.1:11397394-11397413 None:intergenic 45.0%
AATACGCATGTACATCCGCA+AGG + chr7.1:11395424-11395443 None:intergenic 45.0%
AATTCGACCCAGTACAACTC+AGG - chr7.1:11396400-11396419 MS.gene018745:CDS 45.0%
ACCGGTAATGACAAGACACA+TGG - chr7.1:11396256-11396275 MS.gene018745:CDS 45.0%
AGAAAGCCATCAAACGTCCA+TGG + chr7.1:11395222-11395241 None:intergenic 45.0%
AGCCTCTTGTGACAAATCAG+AGG + chr7.1:11395013-11395032 None:intergenic 45.0%
AGTAATTGTTCTGTTGGCGG+GGG - chr7.1:11395657-11395676 MS.gene018745:intron 45.0%
AGTTGGAATTGTAGGGGGTT+GGG - chr7.1:11396607-11396626 MS.gene018745:CDS 45.0%
ATACGCATGTACATCCGCAA+GGG + chr7.1:11395423-11395442 None:intergenic 45.0%
ATAGCGTAGTGATCCGAAGA+AGG + chr7.1:11397255-11397274 None:intergenic 45.0%
ATGACAAGACACATGGTTGC+TGG - chr7.1:11396263-11396282 MS.gene018745:CDS 45.0%
ATGGTGTTCGAGCAAGAAGA+TGG - chr7.1:11395483-11395502 MS.gene018745:intron 45.0%
CATGGTGGTTGTACTTGAAC+AGG - chr7.1:11396436-11396455 MS.gene018745:CDS 45.0%
CCGAGTAATTGTTCTGTTGG+CGG - chr7.1:11395654-11395673 MS.gene018745:intron 45.0%
CCGCCAACAGAACAATTACT+CGG + chr7.1:11395657-11395676 None:intergenic 45.0%
CCTGATCAATGGTAACACCT+TGG + chr7.1:11395131-11395150 None:intergenic 45.0%
CGAGTAATTGTTCTGTTGGC+GGG - chr7.1:11395655-11395674 MS.gene018745:intron 45.0%
CTCATGCTAACAGGGAATAC+AGG - chr7.1:11396077-11396096 MS.gene018745:CDS 45.0%
CTGCTGAATGAAGGAGATGT+TGG - chr7.1:11396188-11396207 MS.gene018745:CDS 45.0%
GAGTAATTGTTCTGTTGGCG+GGG - chr7.1:11395656-11395675 MS.gene018745:intron 45.0%
GCACAACCTGTAAATCACGT+GGG + chr7.1:11396310-11396329 None:intergenic 45.0%
GCGTTCTCAAATTTGAACCG+AGG + chr7.1:11397321-11397340 None:intergenic 45.0%
GCGTTTCTGATCTAACAGAC+TGG - chr7.1:11397430-11397449 MS.gene018745:CDS 45.0%
GGCAGATAATGTAAGCATGG+TGG - chr7.1:11396421-11396440 MS.gene018745:CDS 45.0%
GGTTCAAATTTGAGAACGCC+TGG - chr7.1:11397322-11397341 MS.gene018745:CDS 45.0%
GTCAAACAGAGCTTTCAAGG+TGG - chr7.1:11394580-11394599 MS.gene018745:intron 45.0%
GTGAATAAATGGTTGCGTGG+TGG - chr7.1:11395687-11395706 MS.gene018745:intron 45.0%
GTGCGCAAGTAAGAAGAAAC+CGG - chr7.1:11396238-11396257 MS.gene018745:CDS 45.0%
GTGCTGGACTATGTGAATGA+AGG - chr7.1:11396473-11396492 MS.gene018745:CDS 45.0%
GTGCTTAGGAAGGTCAACAT+TGG - chr7.1:11395246-11395265 MS.gene018745:intron 45.0%
GTTCTCTTCCACCTGATCAA+TGG + chr7.1:11395142-11395161 None:intergenic 45.0%
GTTGGACAAACTTCTGAACC+AGG - chr7.1:11396206-11396225 MS.gene018745:CDS 45.0%
GTTGGGATTGCTCAGTCTTA+TGG - chr7.1:11394805-11394824 MS.gene018745:intron 45.0%
TAGTTGGAATTGTAGGGGGT+TGG - chr7.1:11396606-11396625 MS.gene018745:CDS 45.0%
TGAAGGTCCTTTCAATGTGG+TGG - chr7.1:11395785-11395804 MS.gene018745:intron 45.0%
TGAGCTGCTGAAGACATGTA+TGG - chr7.1:11395464-11395483 MS.gene018745:intron 45.0%
TGAGGTTGAAATATGGGCTC+AGG - chr7.1:11395296-11395315 MS.gene018745:intron 45.0%
TGATAGAATGAGGAGTCAGG+TGG - chr7.1:11397509-11397528 MS.gene018745:CDS 45.0%
TGCACAACCTGTAAATCACG+TGG + chr7.1:11396311-11396330 None:intergenic 45.0%
TGTCCTAAGAGACTAGAACC+TGG - chr7.1:11395591-11395610 MS.gene018745:intron 45.0%
TGTGGATGGTGTGCAACTTT+GGG - chr7.1:11395617-11395636 MS.gene018745:intron 45.0%
TTGTGGATGGTGTGCAACTT+TGG - chr7.1:11395616-11395635 MS.gene018745:intron 45.0%
! AATGATGGAGGAAGAGGTAC+TGG - chr7.1:11395735-11395754 MS.gene018745:intron 45.0%
! AGGGCGAATTGGCTTATCAA+TGG - chr7.1:11397051-11397070 MS.gene018745:CDS 45.0%
! AGGTGTTACCATTGATCAGG+TGG - chr7.1:11395131-11395150 MS.gene018745:intron 45.0%
! CCAAGGTGTTACCATTGATC+AGG - chr7.1:11395128-11395147 MS.gene018745:CDS 45.0%
! CCTTTCAATGTGGTGGTGAT+GGG - chr7.1:11395792-11395811 MS.gene018745:intron 45.0%
! TATTTTCATGGCTGCTGGCA+GGG + chr7.1:11396584-11396603 None:intergenic 45.0%
! TCCTTTCAATGTGGTGGTGA+TGG - chr7.1:11395791-11395810 MS.gene018745:intron 45.0%
! TGCTGGACCATTGGTGATAA+GGG - chr7.1:11396280-11396299 MS.gene018745:CDS 45.0%
! TGCTGTTTGTGATTCTGGAC+TGG - chr7.1:11397083-11397102 MS.gene018745:CDS 45.0%
! TTATTTTCATGGCTGCTGGC+AGG + chr7.1:11396585-11396604 None:intergenic 45.0%
! TTGCTGGACCATTGGTGATA+AGG - chr7.1:11396279-11396298 MS.gene018745:CDS 45.0%
!! AAACTTTGGTGTTCTGGCCA+AGG - chr7.1:11395111-11395130 MS.gene018745:CDS 45.0%
!! GTAGGGGCTTTACTTTTCAC+AGG - chr7.1:11395862-11395881 MS.gene018745:CDS 45.0%
!!! CCCCTTTGGTTTTATGCATG+AGG - chr7.1:11395329-11395348 MS.gene018745:intron 45.0%
!!! CTAGAACCTGGTTTTGTGGA+TGG - chr7.1:11395603-11395622 MS.gene018745:intron 45.0%
!!! GAGACTAGAACCTGGTTTTG+TGG - chr7.1:11395599-11395618 MS.gene018745:intron 45.0%
AAAGTCGGGATCAGCTAACC+AGG + chr7.1:11397343-11397362 None:intergenic 50.0%
AAGCCGTTCTTCAACAGCTC+TGG + chr7.1:11397163-11397182 None:intergenic 50.0%
ACAAACTTCTGAACCAGGGC+GGG - chr7.1:11396211-11396230 MS.gene018745:CDS 50.0%
ACACATGGTTGCTGGACCAT+TGG - chr7.1:11396271-11396290 MS.gene018745:CDS 50.0%
ATAACAGAAGACGGGAGGCA+TGG - chr7.1:11396926-11396945 MS.gene018745:CDS 50.0%
ATGCTGCGGCTTCTTCAAGA+CGG - chr7.1:11397667-11397686 MS.gene018745:CDS 50.0%
ATGGCTGCTGCTAATGCTAG+AGG - chr7.1:11395999-11396018 MS.gene018745:CDS 50.0%
ATGGCTTTCTGCTGGTGCTT+AGG - chr7.1:11395232-11395251 MS.gene018745:intron 50.0%
ATGGTTGCGTGGTGGTAGAA+TGG - chr7.1:11395695-11395714 MS.gene018745:intron 50.0%
CAAATCAGAGGATCCAGCTG+AGG + chr7.1:11395001-11395020 None:intergenic 50.0%
CAGCAGATCCCCATCAGTTA+TGG + chr7.1:11396174-11396193 None:intergenic 50.0%
CCACCAGAGCTGTTGAAGAA+CGG - chr7.1:11397157-11397176 MS.gene018745:CDS 50.0%
CCCATCACCACCACATTGAA+AGG + chr7.1:11395795-11395814 None:intergenic 50.0%
CTGGCTGAGGTACATACAGA+AGG - chr7.1:11397102-11397121 MS.gene018745:CDS 50.0%
CTTTCTGCTGGTGCTTAGGA+AGG - chr7.1:11395236-11395255 MS.gene018745:intron 50.0%
GAATCCTACAAGAAGGGCCA+TGG - chr7.1:11395202-11395221 MS.gene018745:intron 50.0%
GAATCTGCCAGCACCTTCTT+CGG - chr7.1:11397239-11397258 MS.gene018745:CDS 50.0%
GACAAACTTCTGAACCAGGG+CGG - chr7.1:11396210-11396229 MS.gene018745:CDS 50.0%
GACATCCAACCAGATACGTC+AGG + chr7.1:11395356-11395375 None:intergenic 50.0%
GATCCAGCTGAGGATCCATT+TGG + chr7.1:11394991-11395010 None:intergenic 50.0%
GATGGGGATCTGCTGAATGA+AGG - chr7.1:11396179-11396198 MS.gene018745:CDS 50.0%
GCGCTCTTGCTACTGAAAAC+TGG - chr7.1:11397187-11397206 MS.gene018745:CDS 50.0%
GGAAGCAAGTGATATGGTGC+TGG - chr7.1:11396457-11396476 MS.gene018745:CDS 50.0%
GTCAAAGAGCGAAGACTCAC+TGG - chr7.1:11397610-11397629 MS.gene018745:CDS 50.0%
GTGGATGGTGTGCAACTTTG+GGG - chr7.1:11395618-11395637 MS.gene018745:intron 50.0%
GTTATTGGTCCTAATGGGGG+AGG - chr7.1:11395897-11395916 MS.gene018745:CDS 50.0%
TCACCAAATGGATCCTCAGC+TGG - chr7.1:11394985-11395004 MS.gene018745:CDS 50.0%
TGCACACCATCCACAAAACC+AGG + chr7.1:11395612-11395631 None:intergenic 50.0%
TGCATGAATTGGAACCGCAC+CGG + chr7.1:11395078-11395097 None:intergenic 50.0%
TGCTGACACAGTCCTAGATG+AGG - chr7.1:11395278-11395297 MS.gene018745:intron 50.0%
TGCTTGAGCTGTGCGTTGTT+GGG - chr7.1:11395034-11395053 MS.gene018745:CDS 50.0%
TTGCTTGAGCTGTGCGTTGT+TGG - chr7.1:11395033-11395052 MS.gene018745:CDS 50.0%
! AAGACTCACTGGTTACGGGA+TGG - chr7.1:11397621-11397640 MS.gene018745:CDS 50.0%
! AGCGAAGACTCACTGGTTAC+GGG - chr7.1:11397617-11397636 MS.gene018745:CDS 50.0%
! GAAGCTGTTGACTGACAAGC+CGG - chr7.1:11395056-11395075 MS.gene018745:CDS 50.0%
! GACGTTTGATGGCTTTCTGC+TGG - chr7.1:11395224-11395243 MS.gene018745:intron 50.0%
! GAGCGAAGACTCACTGGTTA+CGG - chr7.1:11397616-11397635 MS.gene018745:CDS 50.0%
! GGACCATTGGTGATAAGGGA+TGG - chr7.1:11396284-11396303 MS.gene018745:CDS 50.0%
! TAGTGATCCGAAGAAGGTGC+TGG + chr7.1:11397249-11397268 None:intergenic 50.0%
!! TTGTGATTCTGGACTGGCTG+AGG - chr7.1:11397089-11397108 MS.gene018745:CDS 50.0%
ACGTCCATGGCCCTTCTTGT+AGG + chr7.1:11395209-11395228 None:intergenic 55.0%
GAAGGGCCATGGACGTTTGA+TGG - chr7.1:11395213-11395232 MS.gene018745:intron 55.0%
GAGGACCTGACGTATCTGGT+TGG - chr7.1:11395348-11395367 MS.gene018745:intron 55.0%
GCATGAGGACCTGACGTATC+TGG - chr7.1:11395344-11395363 MS.gene018745:intron 55.0%
GGATGGCCCACGTGATTTAC+AGG - chr7.1:11396301-11396320 MS.gene018745:CDS 55.0%
GGGCCATCCCTTATCACCAA+TGG + chr7.1:11396290-11396309 None:intergenic 55.0%
GGTGCGGTTCCAATTCATGC+AGG - chr7.1:11395077-11395096 MS.gene018745:CDS 55.0%
GTCTTGAAGAAGCCGCAGCA+TGG + chr7.1:11397668-11397687 None:intergenic 55.0%
TGACCTTCACCTCCCCCATT+AGG + chr7.1:11395909-11395928 None:intergenic 55.0%
TTGCGTGGTGGTAGAATGGC+TGG - chr7.1:11395699-11395718 MS.gene018745:intron 55.0%
! CCGTTCTTCAACAGCTCTGG+TGG + chr7.1:11397160-11397179 None:intergenic 55.0%
! GGCCGTAATGATGGAGGAAG+AGG - chr7.1:11395729-11395748 MS.gene018745:intron 55.0%
! TGTTGACTGACAAGCCGGTG+CGG - chr7.1:11395061-11395080 MS.gene018745:CDS 55.0%
AACAGGGCATGCTCGCTGGA+AGG + chr7.1:11395819-11395838 None:intergenic 60.0%
ACAGGGCATGCTCGCTGGAA+GGG + chr7.1:11395818-11395837 None:intergenic 60.0%
ATGGGGGAGGTGAAGGTCAG+TGG - chr7.1:11395910-11395929 MS.gene018745:CDS 60.0%
GGTCCTAATGGGGGAGGTGA+AGG - chr7.1:11395903-11395922 MS.gene018745:CDS 60.0%
TCCAAACAGGGCATGCTCGC+TGG + chr7.1:11395823-11395842 None:intergenic 60.0%
TCCAGCGAGCATGCCCTGTT+TGG - chr7.1:11395819-11395838 MS.gene018745:intron 60.0%
TGGGGGAGGTGAAGGTCAGT+GGG - chr7.1:11395911-11395930 MS.gene018745:CDS 60.0%
! GGTAGAATGGCTGGTCGTGG+CGG - chr7.1:11395708-11395727 MS.gene018745:intron 60.0%
! GGTGGTAGAATGGCTGGTCG+TGG - chr7.1:11395705-11395724 MS.gene018745:intron 60.0%
CGTGGCGGCCGTAATGATGG+AGG - chr7.1:11395723-11395742 MS.gene018745:intron 65.0%
GGTCGTGGCGGCCGTAATGA+TGG - chr7.1:11395720-11395739 MS.gene018745:intron 65.0%
CTTGCGCACATCACCCGCCC+TGG + chr7.1:11396227-11396246 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 11394556 11397805 11394556 ID=MS.gene018745
chr7.1 mRNA 11394556 11397805 11394556 ID=MS.gene018745.t1;Parent=MS.gene018745
chr7.1 exon 11395844 11397805 11395844 ID=MS.gene018745.t1.exon1;Parent=MS.gene018745.t1
chr7.1 CDS 11395844 11397805 11395844 ID=cds.MS.gene018745.t1;Parent=MS.gene018745.t1
chr7.1 exon 11394839 11395148 11394839 ID=MS.gene018745.t1.exon2;Parent=MS.gene018745.t1
chr7.1 CDS 11394839 11395148 11394839 ID=cds.MS.gene018745.t1;Parent=MS.gene018745.t1
chr7.1 exon 11394556 11394566 11394556 ID=MS.gene018745.t1.exon3;Parent=MS.gene018745.t1
chr7.1 CDS 11394556 11394566 11394556 ID=cds.MS.gene018745.t1;Parent=MS.gene018745.t1
Gene Sequence

>MS.gene018745

ATGGGAGATAGGATCTGGGCCAAAGTCAAACAGAGCTTTCAAGGTGGGAAATTAGGCATCACGCAATTTTCAAATATTCAATGGTACATGATTCATTACAACAGATATGACGTTGAAATTTGGCATCCCAATTTCAAGGAGACTTCATTAGAATCAGAGTATTACTCTCCTTTAATGCTCTCACATTTTCTGAAACCAAGAAGATTTGGAGGGATTTTTCAATGCTGTAAGTTTAATCTAAGAAGATTTGTTGGGATTGCTCAGTCTTATGGAGTCAACGACCTGATGCTTTATAAGGAATGGTCTTCACAATTCAGAGAATATCACTTTCAACTCATGCAATCAACTCTCATACAACTTCTGTTCACTGTTGTTTGTGTGTGTTGTGTCACATTTACCATGGAAAATTTCAATGTTGATATTAATGATTCACCAAATGGATCCTCAGCTGGATCCTCTGATTTGTCACAAGAGGCTTTGCTTGAGCTGTGCGTTGTTGGGAAGCTGTTGACTGACAAGCCGGTGCGGTTCCAATTCATGCAGGAGAGACTTTCAAAACTTTGGTGTTCTGGCCAAGGTGTTACCATTGATCAGGTGGAAGAGAACAAGTTCATATTCCAATTTTACCACCAATGGGATATGGAAAGAATCCTACAAGAAGGGCCATGGACGTTTGATGGCTTTCTGCTGGTGCTTAGGAAGGTCAACATTGGTGAAGCTATTGCTGACACAGTCCTAGATGAGGTTGAAATATGGGCTCAGGTATTTAATATCCCCTTTGGTTTTATGCATGAGGACCTGACGTATCTGGTTGGATGTCATATGGGGCGCTATGTCTCATATGATATCAATAATTATTATGGACCCTTGCGGATGTACATGCGTATTTGTGTGGCTCTGAATGTCAATGAGCTGCTGAAGACATGTATGGTGTTCGAGCAAGAAGATGGTAATGCTGTCAATCTGTCATTTAAATACGAGAAACTTGGTGTATTTTGCTATTGTTGTGGTATCTTGGGACATACTGATCAATATTGTCCTAAGAGACTAGAACCTGGTTTTGTGGATGGTGTGCAACTTTGGGGCAAGTTCTTGAATCCGAGTAATTGTTCTGTTGGCGGGGGTGTAACTGTGAATAAATGGTTGCGTGGTGGTAGAATGGCTGGTCGTGGCGGCCGTAATGATGGAGGAAGAGGTACTGGTAGTAGTAATGGTGTTGCTGATGTTAATGAAGGTCCTTTCAATGTGGTGGTGATGGGCCCTTCCAGCGAGCATGCCCTGTTTGGAAGAGTTAAAATCATACGTGGTAGGGGCTTTACTTTTCACAGGTTAGTCACAAGTGTTATTGGTCCTAATGGGGGAGGTGAAGGTCAGTGGGTTCCTTTTAATCTGAACAATACAAACATTCAAAACCAAGTCACTATCAGAAGGTTAGTTAATGGTATGGCTGCTGCTAATGCTAGAGGTGTTTCTGCAAGTTCTCTGAATACTAATGCTAACCCAACACATCAGCAAATAACTCTCATGCTAACAGGGAATACAGGTAATAATTCAACAGGAAATGATGGGAGTTTGAGATTGATTGGTTGCAACCAAGTGACTAATTCTGAATTCTCCATAACTGATGGGGATCTGCTGAATGAAGGAGATGTTGGACAAACTTCTGAACCAGGGCGGGTGATGTGCGCAAGTAAGAAGAAACCGGTAATGACAAGACACATGGTTGCTGGACCATTGGTGATAAGGGATGGCCCACGTGATTTACAGGTTGTGCAGACACAAAATACACAATATGAAGGTAAAGGTAAAGCAAAAGAAGCATCTGGCCCTGCTGTGAAAAAGAGAATTCGACCCAGTACAACTCAGGCAGATAATGTAAGCATGGTGGTTGTACTTGAACAGGAAGCAAGTGATATGGTGCTGGACTATGTGAATGAAGGTAGTGCTGCTGAAGTGAACTCTGTAACTCTGCAAAACAACCCTTTATTTACTGAAACAATTGTAATGGCGGAGGCTGAAAATCAGCCCTGCCAGCAGCCATGAAAATAATTAGTTGGAATTGTAGGGGGTTGGGTAGTCCCCGTACAATTCCTAGTTTAAAATACCTTGTCTGTGTTTATAAACCGGATATCCTCTATCTTTGTGAAACTATCTCTAAAAGTAATAAAACTGAGGAACTAAAGTATGTTTTGGGGTTTGATTTCTGTTTTACTGTGAATAAACAAGGTCAGAGTGGTGGTCTTGTTTTATACTGGAATTCGTCGGTTAACTGCTCAATCTCTAATTACTCAAATAATCACATTGATGCTGAGATAACAGATACTAATAAAGGTAAGTGGCGTCTTACTGGATATTATGGTTTCCCTAATAATAACAGAAGACGGGAGGCATGGAATTTTTTTAGACAACTTGCAAATGTTTCAAATTTACCGTGGTGTATAATAGGGGACTTTAATGATATTCTTTCTCCTCATGAAAAGAAGGGTAATAATGAAAGGGCGAATTGGCTTATCAATGGTTTTAGAAATGCTGTTTGTGATTCTGGACTGGCTGAGGTACATACAGAAGGTTACCTTTATACATGGTTTAAAAGTCTTGGCACCACCAGAGCTGTTGAAGAACGGCTTGATCGCGCTCTTGCTACTGAAAACTGGAAGATTCAGTTCCCTGATGCAGTTCTTGAGAATCTGCCAGCACCTTCTTCGGATCACTACGCTATTTTGCTCTCATGTGAGTCGATATCCAATAACAGAAGAGTGTTGCCTCGGTTCAAATTTGAGAACGCCTGGTTAGCTGATCCCGACTTTAGTAGTTTCGTCACTGATAAGTGGAGTTCCTATGGAGTTTGCCCGATTGTTGATAAGTTGGAATATTGCGTTTCTGATCTAACAGACTGGAGCAGAAACAGTTTTCATAATTTGAAGCGTGAAATCAATACTTGTCGCCAGAAAATTGATAGAATGAGGAGTCAGGTGGATAGTGATAATATTCATCAGTTTAATGAATTGAGGAGTCGTATGACTCAGCTGTTAATTCAAGAGGATGCTTTTTGGCGTCAAAGAGCGAAGACTCACTGGTTACGGGATGGAGACCTTAATACTAAGTTCTTCCATGCTGCGGCTTCTTCAAGACGGAAAATTAACAAAATTCATTCGTTGTTGGATCCAGATAACAACCGGATTACTGATGAAAATCAATTGTGTGATGTTGCTCAAAATTATTTTGTTGATTTGTTTCAGGAACAGATTAG
Protein sequence

>MS.gene018745.t1

MGDRIWAKVKQSFQGGKLGITQFSNIQWYMIHYNRYDVEIWHPNFKETSLESEYYSPLMLSHFLKPRRFGGIFQCCKFNLRRFVGIAQSYGVNDLMLYKEWSSQFREYHFQLMQSTLIQLLFTVVCVCCVTFTMENFNVDINDSPNGSSAGSSDLSQEALLELCVVGKLLTDKPVRFQFMQERLSKLWCSGQGVTIDQVEENKFIFQFYHQWDMERILQEGPWTFDGFLLVLRKVNIGEAIADTVLDEVEIWAQVFNIPFGFMHEDLTYLVGCHMGRYVSYDINNYYGPLRMYMRICVALNVNELLKTCMVFEQEDGNAVNLSFKYEKLGVFCYCCGILGHTDQYCPKRLEPGFVDGVQLWGKFLNPSNCSVGGGVTVNKWLRGGRMAGRGGRNDGGRGTGSSNGVADVNEGPFNVVVMGPSSEHALFGRVKIIRGRGFTFHRLVTSVIGPNGGGEGQWVPFNLNNTNIQNQVTIRRLVNGMAAANARGVSASSLNTNANPTHQQITLMLTGNTGNNSTGNDGSLRLIGCNQVTNSEFSITDGDLLNEGDVGQTSEPGRVMCASKKKPVMTRHMVAGPLVIRDGPRDLQVVQTQNTQYEGKGKAKEASGPAVKKRIRPSTTQADNVSMVVVLEQEASDMVLDYVNEGSAAEVNSIQFPDAVLENLPAPSSDHYAILLSCESISNNRRVLPRFKFENAWLADPDFSSFVTDKWSSYGVCPIVDKLEYCVSDLTDWSRNSFHNLKREINTCRQKIDRMRRTD