AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81194

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81194.t1 MTR_3g053920 37.443 219 124 5 1 217 1 208 2.59e-38 140
MS.gene81194.t1 MTR_2g061500 50.000 92 46 0 1 92 1 92 5.09e-25 100
MS.gene81194.t1 MTR_8g463110 43.434 99 56 0 336 434 220 318 1.07e-21 98.2
MS.gene81194.t1 MTR_4g020630 45.455 99 54 0 336 434 156 254 2.08e-21 97.1
MS.gene81194.t1 MTR_6g034215 42.424 99 57 0 336 434 224 322 3.89e-20 91.3
MS.gene81194.t1 MTR_1g100687 45.946 74 40 0 336 409 158 231 2.66e-15 75.5
MS.gene81194.t1 MTR_3g044860 36.170 94 34 1 338 431 114 181 9.27e-11 63.2
MS.gene81194.t1 MTR_7g063500 41.667 60 35 0 375 434 37 96 9.49e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 107 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCTGCCACTCGTGTTTC+AGG 0.155042 6.1:-55804178 None:intergenic
AGAACCAAGATTTGATTATA+TGG 0.304906 6.1:+55805736 MS.gene81194:CDS
GGATGATGGGTCACGTGGTT+GGG 0.310299 6.1:+55804325 MS.gene81194:CDS
TGGCTCAGGATGATGCTTAT+TGG 0.318888 6.1:+55805972 MS.gene81194:CDS
GTTCAGCTTCAACCAATATA+TGG 0.332486 6.1:+55804381 MS.gene81194:CDS
TACTGCTGAAACACAAATTC+TGG 0.351179 6.1:+55803726 MS.gene81194:CDS
TTCAACCAATATATGGCTTC+AGG 0.358822 6.1:+55804388 MS.gene81194:CDS
TGCACATTATTTCCAGTCAT+TGG 0.358853 6.1:-55804666 None:intergenic
AGGTTTCAATGGCTTGCATA+TGG 0.362801 6.1:+55804457 MS.gene81194:CDS
CATGCACAGGTTGCTGGCTC+AGG 0.369810 6.1:+55805958 MS.gene81194:CDS
GATAAGGGAATGAGTCTCTT+AGG 0.371406 6.1:+55804885 MS.gene81194:CDS
CAAGCGCATGCACAGGTTGC+TGG 0.375452 6.1:+55805952 MS.gene81194:CDS
GTGCTCATGCCGGTTTGATA+TGG 0.389895 6.1:+55804298 MS.gene81194:CDS
CTTCACTGGACGCCAGATAT+AGG 0.392435 6.1:-55803818 None:intergenic
ATTCTGGACCACTTCCTGAT+TGG 0.396897 6.1:+55803742 MS.gene81194:CDS
TTTACCATATAATCAAATCT+TGG 0.397079 6.1:-55805740 None:intergenic
AGGATCCTGAAGCCATATAT+TGG 0.404648 6.1:-55804393 None:intergenic
GTCTAATGTAGATGGGGATA+AGG 0.405876 6.1:+55804869 MS.gene81194:CDS
GGTCACGTGGTTGGGGAGAA+TGG 0.408683 6.1:+55804333 MS.gene81194:CDS
CGGACAGAGTGAGGCCTTCA+AGG 0.412610 6.1:-55803672 None:intergenic
GTTCCAGCAGCAGGTTTCAA+TGG 0.412660 6.1:+55804446 MS.gene81194:CDS
ACCTCTGACCTTAACCTTGA+AGG 0.415403 6.1:+55803658 MS.gene81194:CDS
TATCTGCCACTCGTGTTTCA+GGG 0.420811 6.1:-55804177 None:intergenic
AGGAACGCATGGCCTATATC+TGG 0.424817 6.1:+55803806 MS.gene81194:CDS
AGGGTGCAGAGCTGAAGAAT+TGG 0.427081 6.1:+55804787 MS.gene81194:CDS
TGCTATTTGTGTGGCTGCCT+AGG 0.430802 6.1:+55804260 MS.gene81194:CDS
CATCCAGACAGTGATTGAAT+TGG 0.431370 6.1:-55803882 None:intergenic
GAGTGAGGCCTTCAAGGTTA+AGG 0.432136 6.1:-55803666 None:intergenic
ACTTCCGGTTTGAAAATGTA+TGG 0.436942 6.1:+55805708 MS.gene81194:CDS
GACCAGCAAGTTCCAGCAGC+AGG 0.437530 6.1:+55804437 MS.gene81194:CDS
TCTAATGTAGATGGGGATAA+GGG 0.438404 6.1:+55804870 MS.gene81194:CDS
GAACCCATGCATCTTATTAC+CGG 0.440837 6.1:-55804362 None:intergenic
AACCTGCTGCTGGAACTTGC+TGG 0.443524 6.1:-55804439 None:intergenic
GTTCCAATTCAATCACTGTC+TGG 0.447913 6.1:+55803879 MS.gene81194:CDS
TCAGGATCCTATTCCTTCAC+AGG 0.450247 6.1:+55804406 MS.gene81194:CDS
CAGTGAGCACACGTCCAATC+AGG 0.459668 6.1:-55803756 None:intergenic
TGAATTTGATTCCGAGGCAC+AGG 0.459988 6.1:+55804767 MS.gene81194:CDS
TGAAGGATTGACTCTCAATC+TGG 0.463556 6.1:+55803696 MS.gene81194:CDS
AACTGACTCTGGATTGTCTT+CGG 0.465718 6.1:-55804841 None:intergenic
AGGATGATGGGTCACGTGGT+TGG 0.473500 6.1:+55804324 MS.gene81194:CDS
GATGATGGGTCACGTGGTTG+GGG 0.474373 6.1:+55804326 MS.gene81194:CDS
AAAGCAAGGACAACTTGGTT+AGG 0.477425 6.1:-55804693 None:intergenic
CAAGCAAAGCAAGGACAACT+TGG 0.483223 6.1:-55804698 None:intergenic
TGCTGAACCTGTGAAGGAAT+AGG 0.484129 6.1:-55804413 None:intergenic
TTAGACTCTAAAACTGACTC+TGG 0.498368 6.1:-55804852 None:intergenic
ACGTGTGCTCACTGACAAAC+AGG 0.501707 6.1:+55803765 MS.gene81194:CDS
ACATCTTATCAGTATGTCCT+AGG 0.504777 6.1:-55804277 None:intergenic
GGTTTCAATGGCTTGCATAT+GGG 0.505285 6.1:+55804458 MS.gene81194:CDS
TGAAACACGAGTGGCAGATA+CGG 0.508378 6.1:+55804180 MS.gene81194:CDS
CAGCTCTGCACCCTGTGCCT+CGG 0.510368 6.1:-55804778 None:intergenic
ACTCTGAACTCGACATCGTC+CGG 0.512555 6.1:+55804482 MS.gene81194:CDS
ATTATATGGTAAATGAGTGT+TGG 0.520623 6.1:+55805750 MS.gene81194:CDS
GGCCTCACTCTGTCCGATGA+AGG 0.521273 6.1:+55803679 MS.gene81194:CDS
TCACATCTTCCACCAATGAC+TGG 0.524020 6.1:+55804654 MS.gene81194:CDS
CATCCTCCTCCATATCAAAC+CGG 0.529206 6.1:-55804307 None:intergenic
TTTGATATGGAGGAGGATGA+TGG 0.529877 6.1:+55804311 MS.gene81194:CDS
ATTTAACAAAGCGCAACTTC+CGG 0.535226 6.1:+55805693 MS.gene81194:intron
GAAGGTTATTAAAGAAGCTA+AGG 0.536894 6.1:+55803909 MS.gene81194:CDS
GCTATGGTAACCTTCTTCAC+TGG 0.537104 6.1:-55803832 None:intergenic
TTGGGGAGAATGGCTGCGAC+CGG 0.550590 6.1:+55804343 MS.gene81194:CDS
TATCTGGCGTCCAGTGAAGA+AGG 0.557336 6.1:+55803822 MS.gene81194:CDS
AGCTGCTGAATTTGATTCCG+AGG 0.557856 6.1:+55804761 MS.gene81194:CDS
CTGATAAGATGTGCTCATGC+CGG 0.558483 6.1:+55804288 MS.gene81194:CDS
AAGCCATTGAAACCTGCTGC+TGG 0.561305 6.1:-55804449 None:intergenic
GCTGTGTCAGATGAGAATAC+TGG 0.565666 6.1:+55804720 MS.gene81194:CDS
GCCTTCAAGGTTAAGGTCAG+AGG 0.568343 6.1:-55803659 None:intergenic
GAGGATATCATCTTCTGAAG+TGG 0.570466 6.1:-55805777 None:intergenic
GCGACCGGTAATAAGATGCA+TGG 0.571466 6.1:+55804358 MS.gene81194:CDS
GAAACACGAGTGGCAGATAC+GGG 0.573485 6.1:+55804181 MS.gene81194:CDS
GAAGAAGGTTACCATAGCAC+TGG 0.576236 6.1:+55803837 MS.gene81194:CDS
ACATTATTTCCAGTCATTGG+TGG 0.576448 6.1:-55804663 None:intergenic
TGGCAGATACGGGTAAATGA+TGG 0.577259 6.1:+55804191 MS.gene81194:CDS
CTTGCACGCAGTAGTCGCAC+TGG 0.583266 6.1:+55805899 MS.gene81194:CDS
TGGTCTTGCTGAACCTGTGA+AGG 0.587858 6.1:-55804419 None:intergenic
TTGATATGGAGGAGGATGAT+GGG 0.589044 6.1:+55804312 MS.gene81194:CDS
CTCATGCCGGTTTGATATGG+AGG 0.591381 6.1:+55804301 MS.gene81194:CDS
GATTGAATTGGAACAAGAAG+CGG 0.594860 6.1:-55803870 None:intergenic
ACAACGTTGTGCTGAGGAGA+TGG 0.595417 6.1:+55805808 MS.gene81194:CDS
ATTGAGAGTCAATCCTTCAT+CGG 0.597117 6.1:-55803692 None:intergenic
CTGATATTGCCTCTCCAAGT+GGG 0.597883 6.1:+55804619 MS.gene81194:CDS
ATCTGCCACTCGTGTTTCAG+GGG 0.598209 6.1:-55804176 None:intergenic
TAAGCTGAAAATTGAAACTG+AGG 0.599401 6.1:+55805856 MS.gene81194:CDS
GTATGTGTCAGCCAGTGCTA+TGG 0.600092 6.1:-55803848 None:intergenic
CGACCGGTAATAAGATGCAT+GGG 0.603494 6.1:+55804359 MS.gene81194:CDS
ATGCCGGTTTGATATGGAGG+AGG 0.606005 6.1:+55804304 MS.gene81194:CDS
ATTAAAGAAGCTAAGGATCG+TGG 0.609851 6.1:+55803916 MS.gene81194:CDS
GCACACGTCCAATCAGGAAG+TGG 0.609977 6.1:-55803750 None:intergenic
ATCCTTCATCGGACAGAGTG+AGG 0.611058 6.1:-55803681 None:intergenic
TCACTGTCTGGATGCTACGA+AGG 0.612442 6.1:+55803891 MS.gene81194:CDS
GAATTTGATTCCGAGGCACA+GGG 0.612643 6.1:+55804768 MS.gene81194:CDS
TCAGCACAACGTTGTTGACG+AGG 0.617525 6.1:-55805800 None:intergenic
TTTAGAGTCTAATGTAGATG+GGG 0.622394 6.1:+55804863 MS.gene81194:CDS
TCGTCAACAACGTTGTGCTG+AGG 0.637782 6.1:+55805802 MS.gene81194:CDS
TGTTACACAAGCGCATGCAC+AGG 0.641252 6.1:+55805945 MS.gene81194:CDS
ACTGATATTGCCTCTCCAAG+TGG 0.642808 6.1:+55804618 MS.gene81194:CDS
CACAACGTTGTTGACGAGGG+AGG 0.648230 6.1:-55805796 None:intergenic
CTGACACAGCAAGCAAAGCA+AGG 0.649849 6.1:-55804707 None:intergenic
GTTAAGGTCAGAGGTAGACA+TGG 0.664777 6.1:-55803650 None:intergenic
CAGCACAACGTTGTTGACGA+GGG 0.666833 6.1:-55805799 None:intergenic
GAGGAGGATGATGGGTCACG+TGG 0.677189 6.1:+55804320 MS.gene81194:CDS
GCTTTATGATAACTACAACA+TGG 0.687185 6.1:+55803938 MS.gene81194:CDS
GTGGTTGAACATATTGCACC+CGG 0.690564 6.1:+55803960 MS.gene81194:CDS
TTGCACCCCTGAAACACGAG+TGG 0.703718 6.1:+55804171 MS.gene81194:CDS
TTATGATAACTACAACATGG+TGG 0.709273 6.1:+55803941 MS.gene81194:CDS
ACGTTGTGCTGAGGAGATGG+TGG 0.716325 6.1:+55805811 MS.gene81194:CDS
GTGCTGAGGAGATGGTGGTG+TGG 0.721305 6.1:+55805816 MS.gene81194:CDS
GTGTCAGATGAGAATACTGG+TGG 0.751380 6.1:+55804723 MS.gene81194:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACCTATATTTTATTATTA+TGG - chr6.1:55805131-55805150 None:intergenic 10.0%
!! TTATTCAACTAATCATATTA+CGG + chr6.1:55805257-55805276 MS.gene81194:intron 15.0%
!!! TCTTTTTCTGTTAATAATAT+TGG + chr6.1:55805177-55805196 MS.gene81194:intron 15.0%
!! GGTCCATAATAATAAAATAT+AGG + chr6.1:55805125-55805144 MS.gene81194:intron 20.0%
!! TAATGAATTTAAACAATCCT+TGG + chr6.1:55804936-55804955 MS.gene81194:intron 20.0%
!! TGATATCATTAATCTCATTA+TGG - chr6.1:55804541-55804560 None:intergenic 20.0%
!! TTAGTAAGCTCAAAAAAATT+TGG + chr6.1:55804585-55804604 MS.gene81194:intron 20.0%
!! TTTACCATATAATCAAATCT+TGG - chr6.1:55805743-55805762 None:intergenic 20.0%
!!! TGGGAATTTTAATGATATTT+TGG + chr6.1:55805385-55805404 MS.gene81194:intron 20.0%
! AAACCATTAATCAACCAATT+AGG - chr6.1:55805443-55805462 None:intergenic 25.0%
! AGAACCAAGATTTGATTATA+TGG + chr6.1:55805736-55805755 MS.gene81194:CDS 25.0%
! ATTATATGGTAAATGAGTGT+TGG + chr6.1:55805750-55805769 MS.gene81194:CDS 25.0%
! CATTTATCTTCTCAATTTGT+AGG + chr6.1:55805347-55805366 MS.gene81194:intron 25.0%
! GTTAATAATATTGGACATAG+TGG + chr6.1:55805186-55805205 MS.gene81194:intron 25.0%
!!! TAATGATATTTTGGATGACA+GGG + chr6.1:55805394-55805413 MS.gene81194:intron 25.0%
!!! TTAATGATATTTTGGATGAC+AGG + chr6.1:55805393-55805412 MS.gene81194:intron 25.0%
!!! TTTTAGAGTCTAATGTAGAT+GGG + chr6.1:55804862-55804881 MS.gene81194:CDS 25.0%
AATAGCAGGACTTAAAGATT+AGG + chr6.1:55804976-55804995 MS.gene81194:intron 30.0%
ACTTGTACTATATGGACATT+TGG + chr6.1:55804003-55804022 MS.gene81194:intron 30.0%
AGAAAATGAGTCTGTTAAGT+TGG + chr6.1:55805007-55805026 MS.gene81194:intron 30.0%
CAGTTCTTATATAAGACTGA+AGG + chr6.1:55804133-55804152 MS.gene81194:intron 30.0%
CTTGTACTATATGGACATTT+GGG + chr6.1:55804004-55804023 MS.gene81194:intron 30.0%
GAAGGTTATTAAAGAAGCTA+AGG + chr6.1:55803909-55803928 MS.gene81194:CDS 30.0%
GCTTTATGATAACTACAACA+TGG + chr6.1:55803938-55803957 MS.gene81194:CDS 30.0%
TAAGCTGAAAATTGAAACTG+AGG + chr6.1:55805856-55805875 MS.gene81194:CDS 30.0%
TTATGATAACTACAACATGG+TGG + chr6.1:55803941-55803960 MS.gene81194:CDS 30.0%
! GTTTCCATACATTTTCAAAC+CGG - chr6.1:55805715-55805734 None:intergenic 30.0%
! TTTAGAGTCTAATGTAGATG+GGG + chr6.1:55804863-55804882 MS.gene81194:CDS 30.0%
!! TGTTTTAAGTGTGAGAAGTT+GGG + chr6.1:55804230-55804249 MS.gene81194:CDS 30.0%
!!! CAATTATTTTAAGGAACGCA+TGG + chr6.1:55803795-55803814 MS.gene81194:CDS 30.0%
!!! GTTTTAGAGTCTAATGTAGA+TGG + chr6.1:55804861-55804880 MS.gene81194:CDS 30.0%
!!! TTGTTTTAAGTGTGAGAAGT+TGG + chr6.1:55804229-55804248 MS.gene81194:CDS 30.0%
AAATTTAGTAGCTCCAGCTT+CGG + chr6.1:55805625-55805644 MS.gene81194:intron 35.0%
AAGACGCAAATCATGGTAAT+TGG + chr6.1:55805289-55805308 MS.gene81194:intron 35.0%
AAGCTCTTAAACCAAGTGTA+AGG - chr6.1:55805518-55805537 None:intergenic 35.0%
AATTAACCTAGAGTGGGAAA+CGG + chr6.1:55804056-55804075 MS.gene81194:intron 35.0%
ACATCTTATCAGTATGTCCT+AGG - chr6.1:55804280-55804299 None:intergenic 35.0%
ACATTATTTCCAGTCATTGG+TGG - chr6.1:55804666-55804685 None:intergenic 35.0%
ATTAAAGAAGCTAAGGATCG+TGG + chr6.1:55803916-55803935 MS.gene81194:CDS 35.0%
ATTGAGAGTCAATCCTTCAT+CGG - chr6.1:55803695-55803714 None:intergenic 35.0%
ATTTAACAAAGCGCAACTTC+CGG + chr6.1:55805693-55805712 MS.gene81194:intron 35.0%
CGTCCTAATTGGTTGATTAA+TGG + chr6.1:55805437-55805456 MS.gene81194:intron 35.0%
CTAGGTTAATTCATCCCAAA+TGG - chr6.1:55804047-55804066 None:intergenic 35.0%
GATTGAATTGGAACAAGAAG+CGG - chr6.1:55803873-55803892 None:intergenic 35.0%
GCTGAAAATGATGTAATAGC+AGG + chr6.1:55804962-55804981 MS.gene81194:intron 35.0%
GTTCAGCTTCAACCAATATA+TGG + chr6.1:55804381-55804400 MS.gene81194:CDS 35.0%
TACACTTGGTTTAAGAGCTT+AGG + chr6.1:55805518-55805537 MS.gene81194:intron 35.0%
TACTGCTGAAACACAAATTC+TGG + chr6.1:55803726-55803745 MS.gene81194:CDS 35.0%
TAGCGTGAACTTGTACTATA+TGG + chr6.1:55803995-55804014 MS.gene81194:intron 35.0%
TCTAATGTAGATGGGGATAA+GGG + chr6.1:55804870-55804889 MS.gene81194:CDS 35.0%
TGCACATTATTTCCAGTCAT+TGG - chr6.1:55804669-55804688 None:intergenic 35.0%
TTCAACCAATATATGGCTTC+AGG + chr6.1:55804388-55804407 MS.gene81194:CDS 35.0%
! AAGTTGCGCTTTGTTAAATG+AGG - chr6.1:55805692-55805711 None:intergenic 35.0%
! ACATCATTTTCAGCATACCA+AGG - chr6.1:55804956-55804975 None:intergenic 35.0%
! ACTTCCGGTTTGAAAATGTA+TGG + chr6.1:55805708-55805727 MS.gene81194:CDS 35.0%
! AGTTGCGCTTTGTTAAATGA+GGG - chr6.1:55805691-55805710 None:intergenic 35.0%
! CTTAACAGACTCATTTTCTG+TGG - chr6.1:55805006-55805025 None:intergenic 35.0%
! TAGGACTGTGGTGTATTTTT+GGG + chr6.1:55805366-55805385 MS.gene81194:intron 35.0%
!! AGACAAGTCGTTATTGATTC+AGG + chr6.1:55805464-55805483 MS.gene81194:intron 35.0%
!! GGCTTGGTTCTAATTATTTC+TGG + chr6.1:55805589-55805608 MS.gene81194:intron 35.0%
!! GGTGCGCTTCAATTATTTTA+AGG + chr6.1:55803786-55803805 MS.gene81194:CDS 35.0%
!! GTTTTAAGTGTGAGAAGTTG+GGG + chr6.1:55804231-55804250 MS.gene81194:CDS 35.0%
!! TTAGACTCTAAAACTGACTC+TGG - chr6.1:55804855-55804874 None:intergenic 35.0%
AAAGCAAGGACAACTTGGTT+AGG - chr6.1:55804696-55804715 None:intergenic 40.0%
AACGGAATCGGTAAGTATCT+TGG + chr6.1:55804074-55804093 MS.gene81194:intron 40.0%
ACGCAAATCATGGTAATTGG+AGG + chr6.1:55805292-55805311 MS.gene81194:intron 40.0%
AGACTGTGCTTTGGCAAATT+AGG + chr6.1:55805568-55805587 MS.gene81194:intron 40.0%
AGGATCCTGAAGCCATATAT+TGG - chr6.1:55804396-55804415 None:intergenic 40.0%
AGGTGCATCAACTACCATTT+GGG + chr6.1:55804030-55804049 MS.gene81194:intron 40.0%
ATGTTGCAAAAAATCGCACG+CGG - chr6.1:55805330-55805349 None:intergenic 40.0%
CATCCAGACAGTGATTGAAT+TGG - chr6.1:55803885-55803904 None:intergenic 40.0%
CATGGTAATTGGAGGCTTAT+AGG + chr6.1:55805300-55805319 MS.gene81194:intron 40.0%
CTTCTCAATTTGTAGGACTG+TGG + chr6.1:55805354-55805373 MS.gene81194:intron 40.0%
GAACCCATGCATCTTATTAC+CGG - chr6.1:55804365-55804384 None:intergenic 40.0%
GAGATACAAGACGCAAATCA+TGG + chr6.1:55805282-55805301 MS.gene81194:intron 40.0%
GATAAGGGAATGAGTCTCTT+AGG + chr6.1:55804885-55804904 MS.gene81194:CDS 40.0%
GGAAAGATTAGACTGTGCTT+TGG + chr6.1:55805559-55805578 MS.gene81194:intron 40.0%
GGGATGAATTAACCTAGAGT+GGG + chr6.1:55804050-55804069 MS.gene81194:intron 40.0%
GTCTAATGTAGATGGGGATA+AGG + chr6.1:55804869-55804888 MS.gene81194:CDS 40.0%
GTTCCAATTCAATCACTGTC+TGG + chr6.1:55803879-55803898 MS.gene81194:CDS 40.0%
GTTGAGCAAAACGTCCTAAT+TGG + chr6.1:55805426-55805445 MS.gene81194:intron 40.0%
TAATCTTTCCTCTACCGCAT+GGG - chr6.1:55805549-55805568 None:intergenic 40.0%
TATGGACCAAAGTCTCACTT+AGG - chr6.1:55805113-55805132 None:intergenic 40.0%
TCACTTAGGAAGAGGAATTC+CGG - chr6.1:55805099-55805118 None:intergenic 40.0%
TCCCTCTAGATAAGTCTTAC+CGG - chr6.1:55804504-55804523 None:intergenic 40.0%
TCCGGTAAGACTTATCTAGA+GGG + chr6.1:55804500-55804519 MS.gene81194:intron 40.0%
TGGGATGAATTAACCTAGAG+TGG + chr6.1:55804049-55804068 MS.gene81194:intron 40.0%
TTGAGGGATATCCTTACACT+TGG + chr6.1:55805504-55805523 MS.gene81194:intron 40.0%
TTGATATGGAGGAGGATGAT+GGG + chr6.1:55804312-55804331 MS.gene81194:CDS 40.0%
TTTGATATGGAGGAGGATGA+TGG + chr6.1:55804311-55804330 MS.gene81194:CDS 40.0%
! AACTGACTCTGGATTGTCTT+CGG - chr6.1:55804844-55804863 None:intergenic 40.0%
! ACTCTCGGATGTTCATTTTG+AGG + chr6.1:55805487-55805506 MS.gene81194:intron 40.0%
! AGGTTTCAATGGCTTGCATA+TGG + chr6.1:55804457-55804476 MS.gene81194:CDS 40.0%
! AGTTCCTGATCTGAAGTATC+TGG + chr6.1:55805059-55805078 MS.gene81194:intron 40.0%
! CTCTCGGATGTTCATTTTGA+GGG + chr6.1:55805488-55805507 MS.gene81194:intron 40.0%
! GAGGATATCATCTTCTGAAG+TGG - chr6.1:55805780-55805799 None:intergenic 40.0%
! GGTTTCAATGGCTTGCATAT+GGG + chr6.1:55804458-55804477 MS.gene81194:CDS 40.0%
! GTAGGACTGTGGTGTATTTT+TGG + chr6.1:55805365-55805384 MS.gene81194:intron 40.0%
! GTGGTAGTCTTGCTTTATTC+TGG + chr6.1:55805205-55805224 MS.gene81194:intron 40.0%
! TAGGTTTTGCGTTACGTTCT+TGG + chr6.1:55805144-55805163 MS.gene81194:intron 40.0%
! TGAAGGATTGACTCTCAATC+TGG + chr6.1:55803696-55803715 MS.gene81194:CDS 40.0%
!! CGTTATTGATTCAGGACTCT+CGG + chr6.1:55805472-55805491 MS.gene81194:intron 40.0%
!! TAGGTGCTGATGTTTGTACT+GGG + chr6.1:55804904-55804923 MS.gene81194:intron 40.0%
!! TTAGGTGCTGATGTTTGTAC+TGG + chr6.1:55804903-55804922 MS.gene81194:intron 40.0%
!!! GGGACTTTTTGCTATTTGTG+TGG + chr6.1:55804251-55804270 MS.gene81194:CDS 40.0%
AATCTTTCCTCTACCGCATG+GGG - chr6.1:55805548-55805567 None:intergenic 45.0%
ACCTCTGACCTTAACCTTGA+AGG + chr6.1:55803658-55803677 MS.gene81194:CDS 45.0%
ACTGATATTGCCTCTCCAAG+TGG + chr6.1:55804618-55804637 MS.gene81194:CDS 45.0%
AGCTGCTGAATTTGATTCCG+AGG + chr6.1:55804761-55804780 MS.gene81194:CDS 45.0%
AGTACAAGTTCACGCTAGCT+GGG - chr6.1:55803992-55804011 None:intergenic 45.0%
AGTTGGAACTGTCGAGGTTT+AGG + chr6.1:55805024-55805043 MS.gene81194:intron 45.0%
ATAGGATAGTGATCCGAAGC+TGG - chr6.1:55805641-55805660 None:intergenic 45.0%
ATTCTGGACCACTTCCTGAT+TGG + chr6.1:55803742-55803761 MS.gene81194:CDS 45.0%
CAAGCAAAGCAAGGACAACT+TGG - chr6.1:55804701-55804720 None:intergenic 45.0%
CAGGTGCATCAACTACCATT+TGG + chr6.1:55804029-55804048 MS.gene81194:intron 45.0%
CATCCTCCTCCATATCAAAC+CGG - chr6.1:55804310-55804329 None:intergenic 45.0%
CCAAAGTCTCACTTAGGAAG+AGG - chr6.1:55805107-55805126 None:intergenic 45.0%
CCTCTTCCTAAGTGAGACTT+TGG + chr6.1:55805104-55805123 MS.gene81194:intron 45.0%
CGACCGGTAATAAGATGCAT+GGG + chr6.1:55804359-55804378 MS.gene81194:CDS 45.0%
CTAATCTTTCCTCTACCGCA+TGG - chr6.1:55805550-55805569 None:intergenic 45.0%
CTATATGGACATTTGGGTCC+AGG + chr6.1:55804010-55804029 MS.gene81194:intron 45.0%
CTGATAAGATGTGCTCATGC+CGG + chr6.1:55804288-55804307 MS.gene81194:CDS 45.0%
CTGATATTGCCTCTCCAAGT+GGG + chr6.1:55804619-55804638 MS.gene81194:CDS 45.0%
GAAGAAGGTTACCATAGCAC+TGG + chr6.1:55803837-55803856 MS.gene81194:CDS 45.0%
GAATTTGATTCCGAGGCACA+GGG + chr6.1:55804768-55804787 MS.gene81194:CDS 45.0%
GCTATGGTAACCTTCTTCAC+TGG - chr6.1:55803835-55803854 None:intergenic 45.0%
GCTGTGTCAGATGAGAATAC+TGG + chr6.1:55804720-55804739 MS.gene81194:CDS 45.0%
GGAATTCCGGATTGTAGTGT+CGG - chr6.1:55805086-55805105 None:intergenic 45.0%
GGAGTACGGTTCAACAGAAT+AGG - chr6.1:55805659-55805678 None:intergenic 45.0%
GTCCGGTAAGACTTATCTAG+AGG + chr6.1:55804499-55804518 MS.gene81194:intron 45.0%
GTGCTTTGGCAAATTAGGCT+TGG + chr6.1:55805573-55805592 MS.gene81194:intron 45.0%
GTGGTTGAACATATTGCACC+CGG + chr6.1:55803960-55803979 MS.gene81194:CDS 45.0%
GTGTCAGATGAGAATACTGG+TGG + chr6.1:55804723-55804742 MS.gene81194:CDS 45.0%
TACTAAGCTAGACAGCCATG+AGG - chr6.1:55804571-55804590 None:intergenic 45.0%
TAGTACAAGTTCACGCTAGC+TGG - chr6.1:55803993-55804012 None:intergenic 45.0%
TATCTGCCACTCGTGTTTCA+GGG - chr6.1:55804180-55804199 None:intergenic 45.0%
TCACATCTTCCACCAATGAC+TGG + chr6.1:55804654-55804673 MS.gene81194:CDS 45.0%
TCAGGATCCTATTCCTTCAC+AGG + chr6.1:55804406-55804425 MS.gene81194:CDS 45.0%
TGAAACACGAGTGGCAGATA+CGG + chr6.1:55804180-55804199 MS.gene81194:CDS 45.0%
TGAATTTGATTCCGAGGCAC+AGG + chr6.1:55804767-55804786 MS.gene81194:CDS 45.0%
TGATATCAAGTCTCGCCTCA+TGG + chr6.1:55804553-55804572 MS.gene81194:intron 45.0%
TGCTGAACCTGTGAAGGAAT+AGG - chr6.1:55804416-55804435 None:intergenic 45.0%
TGGCAGATACGGGTAAATGA+TGG + chr6.1:55804191-55804210 MS.gene81194:CDS 45.0%
TGGCTCAGGATGATGCTTAT+TGG + chr6.1:55805972-55805991 MS.gene81194:CDS 45.0%
TTGGATGACAGGGAAAAGCA+TGG + chr6.1:55805404-55805423 MS.gene81194:intron 45.0%
! CAAATGGTAGTTGATGCACC+TGG - chr6.1:55804031-55804050 None:intergenic 45.0%
! GATGAAGCTTTTGTCCCACT+TGG - chr6.1:55804636-55804655 None:intergenic 45.0%
!! AGGTGCTGATGTTTGTACTG+GGG + chr6.1:55804905-55804924 MS.gene81194:intron 45.0%
!! CTGTTAAGTTGGAACTGTCG+AGG + chr6.1:55805018-55805037 MS.gene81194:intron 45.0%
AAGCCATTGAAACCTGCTGC+TGG - chr6.1:55804452-55804471 None:intergenic 50.0%
ACAACGTTGTGCTGAGGAGA+TGG + chr6.1:55805808-55805827 MS.gene81194:CDS 50.0%
ACGTGTGCTCACTGACAAAC+AGG + chr6.1:55803765-55803784 MS.gene81194:CDS 50.0%
ACTCTGAACTCGACATCGTC+CGG + chr6.1:55804482-55804501 MS.gene81194:CDS 50.0%
AGGAACGCATGGCCTATATC+TGG + chr6.1:55803806-55803825 MS.gene81194:CDS 50.0%
AGGGTGCAGAGCTGAAGAAT+TGG + chr6.1:55804787-55804806 MS.gene81194:CDS 50.0%
ATCCTTCATCGGACAGAGTG+AGG - chr6.1:55803684-55803703 None:intergenic 50.0%
ATCTGCCACTCGTGTTTCAG+GGG - chr6.1:55804179-55804198 None:intergenic 50.0%
CAGCACAACGTTGTTGACGA+GGG - chr6.1:55805802-55805821 None:intergenic 50.0%
CCTAGAGTGGGAAACGGAAT+CGG + chr6.1:55804062-55804081 MS.gene81194:intron 50.0%
CGGACCAGATACTTCAGATC+AGG - chr6.1:55805066-55805085 None:intergenic 50.0%
CTGACACAGCAAGCAAAGCA+AGG - chr6.1:55804710-55804729 None:intergenic 50.0%
CTTCACTGGACGCCAGATAT+AGG - chr6.1:55803821-55803840 None:intergenic 50.0%
GAAACACGAGTGGCAGATAC+GGG + chr6.1:55804181-55804200 MS.gene81194:CDS 50.0%
GAGTGAGGCCTTCAAGGTTA+AGG - chr6.1:55803669-55803688 None:intergenic 50.0%
GCCTTCAAGGTTAAGGTCAG+AGG - chr6.1:55803662-55803681 None:intergenic 50.0%
GCGACCGGTAATAAGATGCA+TGG + chr6.1:55804358-55804377 MS.gene81194:CDS 50.0%
GTATCTGCCACTCGTGTTTC+AGG - chr6.1:55804181-55804200 None:intergenic 50.0%
GTATGTGTCAGCCAGTGCTA+TGG - chr6.1:55803851-55803870 None:intergenic 50.0%
GTTCCAGCAGCAGGTTTCAA+TGG + chr6.1:55804446-55804465 MS.gene81194:CDS 50.0%
TATCTGGCGTCCAGTGAAGA+AGG + chr6.1:55803822-55803841 MS.gene81194:CDS 50.0%
TCACTGTCTGGATGCTACGA+AGG + chr6.1:55803891-55803910 MS.gene81194:CDS 50.0%
TCAGATCAGGAACTGCACTC+AGG - chr6.1:55805053-55805072 None:intergenic 50.0%
TCAGCACAACGTTGTTGACG+AGG - chr6.1:55805803-55805822 None:intergenic 50.0%
TCGTCAACAACGTTGTGCTG+AGG + chr6.1:55805802-55805821 MS.gene81194:CDS 50.0%
TCTGGTCCGACACTACAATC+CGG + chr6.1:55805077-55805096 MS.gene81194:intron 50.0%
TGTTACACAAGCGCATGCAC+AGG + chr6.1:55805945-55805964 MS.gene81194:CDS 50.0%
! AGCTTTTGTCCCACTTGGAG+AGG - chr6.1:55804631-55804650 None:intergenic 50.0%
! GTGCTGATGTTTGTACTGGG+GGG + chr6.1:55804907-55804926 MS.gene81194:intron 50.0%
! GTTAAATGAGGGCGCACAAC+AGG - chr6.1:55805680-55805699 None:intergenic 50.0%
! TGCTATTTGTGTGGCTGCCT+AGG + chr6.1:55804260-55804279 MS.gene81194:CDS 50.0%
! TGGTCTTGCTGAACCTGTGA+AGG - chr6.1:55804422-55804441 None:intergenic 50.0%
!! ATGCCGGTTTGATATGGAGG+AGG + chr6.1:55804304-55804323 MS.gene81194:CDS 50.0%
!! CTCATGCCGGTTTGATATGG+AGG + chr6.1:55804301-55804320 MS.gene81194:CDS 50.0%
!! GGTGCTGATGTTTGTACTGG+GGG + chr6.1:55804906-55804925 MS.gene81194:intron 50.0%
!! GTGCTCATGCCGGTTTGATA+TGG + chr6.1:55804298-55804317 MS.gene81194:CDS 50.0%
AACCTGCTGCTGGAACTTGC+TGG - chr6.1:55804442-55804461 None:intergenic 55.0%
ACGTTGTGCTGAGGAGATGG+TGG + chr6.1:55805811-55805830 MS.gene81194:CDS 55.0%
CACAACGTTGTTGACGAGGG+AGG - chr6.1:55805799-55805818 None:intergenic 55.0%
CAGTGAGCACACGTCCAATC+AGG - chr6.1:55803759-55803778 None:intergenic 55.0%
CCGATTCCGTTTCCCACTCT+AGG - chr6.1:55804065-55804084 None:intergenic 55.0%
GAGCTTAGGTACACCCCATG+CGG + chr6.1:55805532-55805551 MS.gene81194:intron 55.0%
GCACACGTCCAATCAGGAAG+TGG - chr6.1:55803753-55803772 None:intergenic 55.0%
TTGCACCCCTGAAACACGAG+TGG + chr6.1:55804171-55804190 MS.gene81194:CDS 55.0%
!! AGGATGATGGGTCACGTGGT+TGG + chr6.1:55804324-55804343 MS.gene81194:CDS 55.0%
!! GATGATGGGTCACGTGGTTG+GGG + chr6.1:55804326-55804345 MS.gene81194:CDS 55.0%
!! GGATGATGGGTCACGTGGTT+GGG + chr6.1:55804325-55804344 MS.gene81194:CDS 55.0%
AGGTACACCCCATGCGGTAG+AGG + chr6.1:55805538-55805557 MS.gene81194:intron 60.0%
CAAGCGCATGCACAGGTTGC+TGG + chr6.1:55805952-55805971 MS.gene81194:CDS 60.0%
CGGACAGAGTGAGGCCTTCA+AGG - chr6.1:55803675-55803694 None:intergenic 60.0%
CTTGCACGCAGTAGTCGCAC+TGG + chr6.1:55805899-55805918 MS.gene81194:CDS 60.0%
GACCAGCAAGTTCCAGCAGC+AGG + chr6.1:55804437-55804456 MS.gene81194:CDS 60.0%
GGCCTCACTCTGTCCGATGA+AGG + chr6.1:55803679-55803698 MS.gene81194:CDS 60.0%
GGTCACGTGGTTGGGGAGAA+TGG + chr6.1:55804333-55804352 MS.gene81194:CDS 60.0%
TTGGGGAGAATGGCTGCGAC+CGG + chr6.1:55804343-55804362 MS.gene81194:CDS 60.0%
! GAGGGCGCACAACAGGAGTA+CGG - chr6.1:55805673-55805692 None:intergenic 60.0%
! GTGCTGAGGAGATGGTGGTG+TGG + chr6.1:55805816-55805835 MS.gene81194:CDS 60.0%
!! CATGCACAGGTTGCTGGCTC+AGG + chr6.1:55805958-55805977 MS.gene81194:CDS 60.0%
!! GAGGAGGATGATGGGTCACG+TGG + chr6.1:55804320-55804339 MS.gene81194:CDS 60.0%
ACGCTAGCTGGGACGACACC+GGG - chr6.1:55803981-55804000 None:intergenic 65.0%
CACGCTAGCTGGGACGACAC+CGG - chr6.1:55803982-55804001 None:intergenic 65.0%
CAGCTCTGCACCCTGTGCCT+CGG - chr6.1:55804781-55804800 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 55803652 55806003 55803652 ID=MS.gene81194
chr6.1 mRNA 55803652 55806003 55803652 ID=MS.gene81194.t1;Parent=MS.gene81194
chr6.1 exon 55803652 55803981 55803652 ID=MS.gene81194.t1.exon1;Parent=MS.gene81194.t1
chr6.1 CDS 55803652 55803981 55803652 ID=cds.MS.gene81194.t1;Parent=MS.gene81194.t1
chr6.1 exon 55804155 55804503 55804155 ID=MS.gene81194.t1.exon2;Parent=MS.gene81194.t1
chr6.1 CDS 55804155 55804503 55804155 ID=cds.MS.gene81194.t1;Parent=MS.gene81194.t1
chr6.1 exon 55804589 55804914 55804589 ID=MS.gene81194.t1.exon3;Parent=MS.gene81194.t1
chr6.1 CDS 55804589 55804914 55804589 ID=cds.MS.gene81194.t1;Parent=MS.gene81194.t1
chr6.1 exon 55805704 55806003 55805704 ID=MS.gene81194.t1.exon4;Parent=MS.gene81194.t1
chr6.1 CDS 55805704 55806003 55805704 ID=cds.MS.gene81194.t1;Parent=MS.gene81194.t1
Gene Sequence

>MS.gene81194

ATGTCTACCTCTGACCTTAACCTTGAAGGCCTCACTCTGTCCGATGAAGGATTGACTCTCAATCTGGATGTCGTTACTGCTGAAACACAAATTCTGGACCACTTCCTGATTGGACGTGTGCTCACTGACAAACAGGTGCGCTTCAATTATTTTAAGGAACGCATGGCCTATATCTGGCGTCCAGTGAAGAAGGTTACCATAGCACTGGCTGACACATACCGCTTCTTGTTCCAATTCAATCACTGTCTGGATGCTACGAAGGTTATTAAAGAAGCTAAGGATCGTGGCTTTATGATAACTACAACATGGTGGTTGAACATATTGCACCCGGTGTCGTCCCAGCTAGCGTGAACTTGTACTATATGGACATTTGGGTCCAGGTGCATCAACTACCATTTGGGATGAATTAACCTAGAGTGGGAAACGGAATCGGTAAGTATCTTGGACACTTAATTGAATTTCATGCTCGCAATACTATTCACAGTTCTTATATAAGACTGAAGGTTCAGATTGATGTTATTGCACCCCTGAAACACGAGTGGCAGATACGGGTAAATGATGGTTCTTATGCAATAATTTGTTTTAAGTGTGAGAAGTTGGGGACTTTTTGCTATTTGTGTGGCTGCCTAGGACATACTGATAAGATGTGCTCATGCCGGTTTGATATGGAGGAGGATGATGGGTCACGTGGTTGGGGAGAATGGCTGCGACCGGTAATAAGATGCATGGGTTCAGCTTCAACCAATATATGGCTTCAGGATCCTATTCCTTCACAGGTTCAGCAAGACCAGCAAGTTCCAGCAGCAGGTTTCAATGGCTTGCATATGGGAACTCTGAACTCGACATCGTCCGGTAAGACTTATCTAGAGGGACGTATTAGTGTTGTCCATAATGAGATTAATGATATCAAGTCTCGCCTCATGGCTGTCTAGCTTAGTAAGCTCAAAAAAATTTGGCATCTCTTTGACTGATATTGCCTCTCCAAGTGGGACAAAAGCTTCATCACATCTTCCACCAATGACTGGAAATAATGTGCAGCAACCTAACCAAGTTGTCCTTGCTTTGCTTGCTGTGTCAGATGAGAATACTGGTGGTAATAATTATTTTGCAGCTGCTGAATTTGATTCCGAGGCACAGGGTGCAGAGCTGAAGAATTGGAAATGTGCACAAACTGTTGAAGACAAAAGAGCCGAAGACAATCCAGAGTCAGTTTTAGAGTCTAATGTAGATGGGGATAAGGGAATGAGTCTCTTAGGTGCTGATGTTTGTACTGGGGGGATGTTGTAATGAATTTAAACAATCCTTGGTATGCTGAAAATGATGTAATAGCAGGACTTAAAGATTAGGTGTGCCACAGAAAATGAGTCTGTTAAGTTGGAACTGTCGAGGTTTAGGTAGCCTGAGTGCAGTTCCTGATCTGAAGTATCTGGTCCGACACTACAATCCGGAATTCCTCTTCCTAAGTGAGACTTTGGTCCATAATAATAAAATATAGGTTTTGCGTTACGTTCTTGGTTATGATTCTTCTTTTTCTGTTAATAATATTGGACATAGTGGTAGTCTTGCTTTATTCTGGCGTGCATCTTTTAATTGTCAAATTATTAATTATTCAACTAATCATATTACGGTAGAGATACAAGACGCAAATCATGGTAATTGGAGGCTTATAGGTGTGCCGCGTGCGATTTTTTGCAACATTTATCTTCTCAATTTGTAGGACTGTGGTGTATTTTTGGGAATTTTAATGATATTTTGGATGACAGGGAAAAGCATGGTTGAGCAAAACGTCCTAATTGGTTGATTAATGGTTTCAGACAAGTCGTTATTGATTCAGGACTCTCGGATGTTCATTTTGAGGGATATCCTTACACTTGGTTTAAGAGCTTAGGTACACCCCATGCGGTAGAGGAAAGATTAGACTGTGCTTTGGCAAATTAGGCTTGGTTCTAATTATTTCTGGAAGCATCATTAGAAAATTTAGTAGCTCCAGCTTCGGATCACTATCCTATTCTGTTGAACCGTACTCCTGTTGTGCGCCCTCATTTAACAAAGCGCAACTTCCGGTTTGAAAATGTATGGAAACTAGAACCAAGATTTGATTATATGGTAAATGAGTGTTGGCAAACCACTTCAGAAGATGATATCCTCCCTCGTCAACAACGTTGTGCTGAGGAGATGGTGGTGTGGAGTAGAAATCATTGTAATAAGCTGAAAATTGAAACTGAGGAATGTCGTCATGAATTGAATCTTGCACGCAGTAGTCGCACTGGTGATGAGAAAAAACAGTTAGCACTGTTACACAAGCGCATGCACAGGTTGCTGGCTCAGGATGATGCTTATTGGAGACAATGA
Protein sequence

>MS.gene81194.t1

MSTSDLNLEGLTLSDEGLTLNLDVVTAETQILDHFLIGRVLTDKQVRFNYFKERMAYIWRPVKKVTIALADTYRFLFQFNHCLDATKVIKEAKDRGFMITTTWWLNILHPVQIDVIAPLKHEWQIRVNDGSYAIICFKCEKLGTFCYLCGCLGHTDKMCSCRFDMEEDDGSRGWGEWLRPVIRCMGSASTNIWLQDPIPSQVQQDQQVPAAGFNGLHMGTLNSTSSVSSKKFGISLTDIASPSGTKASSHLPPMTGNNVQQPNQVVLALLAVSDENTGGNNYFAAAEFDSEAQGAELKNWKCAQTVEDKRAEDNPESVLESNVDGDKGMSLLGADRNFRFENVWKLEPRFDYMVNECWQTTSEDDILPRQQRCAEEMVVWSRNHCNKLKIETEECRHELNLARSSRTGDEKKQLALLHKRMHRLLAQDDAYWRQ