Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85538.t1 | AES70414.1 | 59 | 349 | 74 | 4 | 1 | 349 | 1 | 280 | 7.20E-102 | 381.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85538.t1 | O04244 | 28.7 | 136 | 93 | 2 | 83 | 216 | 6 | 139 | 6.5e-11 | 70.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85538.t1 | G7J017 | 59.0 | 349 | 74 | 4 | 1 | 349 | 1 | 280 | 5.2e-102 | 381.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85538.t1 | MTR_3g053920 | 58.453 | 349 | 76 | 4 | 1 | 349 | 1 | 280 | 7.78e-127 | 372 |
| MS.gene85538.t1 | MTR_2g061500 | 83.721 | 129 | 21 | 0 | 1 | 129 | 1 | 129 | 6.82e-74 | 231 |
| MS.gene85538.t1 | MTR_8g463110 | 66.412 | 131 | 44 | 0 | 403 | 533 | 194 | 324 | 3.28e-54 | 194 |
| MS.gene85538.t1 | MTR_4g103530 | 81.053 | 95 | 18 | 0 | 55 | 149 | 1 | 95 | 2.23e-50 | 171 |
| MS.gene85538.t1 | MTR_4g020630 | 47.368 | 190 | 85 | 4 | 346 | 533 | 84 | 260 | 2.96e-46 | 169 |
| MS.gene85538.t1 | MTR_6g034215 | 56.349 | 126 | 55 | 0 | 404 | 529 | 199 | 324 | 1.71e-44 | 160 |
| MS.gene85538.t1 | MTR_7g011710 | 70.588 | 85 | 25 | 0 | 55 | 139 | 1 | 85 | 6.32e-37 | 134 |
| MS.gene85538.t1 | MTR_6g033215 | 34.503 | 171 | 110 | 1 | 31 | 199 | 124 | 294 | 5.83e-32 | 125 |
| MS.gene85538.t1 | MTR_0010s0370 | 36.313 | 179 | 102 | 4 | 7 | 177 | 3 | 177 | 2.25e-30 | 117 |
| MS.gene85538.t1 | MTR_0010s0350 | 36.313 | 179 | 102 | 4 | 7 | 177 | 3 | 177 | 2.25e-30 | 117 |
| MS.gene85538.t1 | MTR_3g044860 | 42.149 | 121 | 44 | 1 | 404 | 524 | 87 | 181 | 1.70e-26 | 109 |
| MS.gene85538.t1 | MTR_1g100687 | 41.414 | 99 | 58 | 0 | 404 | 502 | 133 | 231 | 8.55e-24 | 100 |
| MS.gene85538.t1 | MTR_7g063500 | 50.769 | 65 | 32 | 0 | 469 | 533 | 38 | 102 | 1.66e-17 | 79.3 |
| MS.gene85538.t1 | MTR_0042s0130 | 35.052 | 97 | 63 | 0 | 404 | 500 | 234 | 330 | 6.80e-15 | 76.6 |
| MS.gene85538.t1 | MTR_1g051330 | 31.667 | 120 | 81 | 1 | 403 | 522 | 349 | 467 | 2.10e-14 | 76.6 |
| MS.gene85538.t1 | MTR_6g009010 | 44.776 | 67 | 37 | 0 | 399 | 465 | 197 | 263 | 3.27e-14 | 73.2 |
| MS.gene85538.t1 | MTR_1g036720 | 33.028 | 109 | 71 | 1 | 7 | 113 | 3 | 111 | 2.41e-13 | 67.0 |
| MS.gene85538.t1 | MTR_7g056813 | 50.769 | 65 | 30 | 1 | 469 | 533 | 8 | 70 | 3.52e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85538.t1 | AT2G17920 | 27.103 | 214 | 148 | 5 | 8 | 216 | 9 | 219 | 1.12e-18 | 87.4 |
| MS.gene85538.t1 | AT3G57587 | 30.282 | 142 | 95 | 2 | 77 | 216 | 80 | 219 | 1.02e-16 | 82.4 |
| MS.gene85538.t1 | AT2G41590 | 29.189 | 185 | 123 | 4 | 36 | 216 | 39 | 219 | 1.24e-16 | 82.0 |
| MS.gene85538.t1 | AT3G31430 | 28.230 | 209 | 142 | 4 | 11 | 215 | 107 | 311 | 5.19e-16 | 79.7 |
| MS.gene85538.t1 | AT2G13450 | 28.571 | 196 | 130 | 5 | 27 | 215 | 26 | 218 | 6.90e-16 | 80.1 |
| MS.gene85538.t1 | AT5G36228 | 27.468 | 233 | 125 | 5 | 8 | 227 | 32 | 233 | 1.57e-15 | 78.6 |
| MS.gene85538.t1 | AT5G25200 | 27.513 | 189 | 121 | 4 | 36 | 216 | 39 | 219 | 1.34e-14 | 75.9 |
| MS.gene85538.t1 | AT5G18636 | 27.513 | 189 | 121 | 4 | 36 | 216 | 39 | 219 | 1.50e-14 | 75.9 |
| MS.gene85538.t1 | AT3G47920 | 30.282 | 142 | 95 | 2 | 77 | 216 | 9 | 148 | 1.54e-14 | 75.1 |
| MS.gene85538.t1 | AT2G02103 | 28.042 | 189 | 120 | 4 | 36 | 216 | 39 | 219 | 1.75e-14 | 75.9 |
| MS.gene85538.t1 | AT4G02000 | 28.676 | 136 | 93 | 2 | 83 | 216 | 6 | 139 | 6.90e-13 | 70.1 |
Find 145 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTGTAATAAAATAAAA+AGG | 0.199288 | 3.4:+11450961 | MS.gene85538:CDS |
| TCCGCACATAAGGATAATTT+TGG | 0.231750 | 3.4:-11450915 | None:intergenic |
| CAGACTCGGTTTCAAGGTTT+AGG | 0.239735 | 3.4:-11448845 | None:intergenic |
| GCAACTTGAACCGGGGTTTA+AGG | 0.249027 | 3.4:+11450845 | MS.gene85538:CDS |
| CTGATGATGGTGTTAGAAAT+TGG | 0.263857 | 3.4:+11449456 | MS.gene85538:CDS |
| ATTTGCTGCTGATGGGGATA+TGG | 0.268644 | 3.4:+11449949 | MS.gene85538:CDS |
| TCCTATCCCTTGACCTACTT+TGG | 0.306186 | 3.4:-11449195 | None:intergenic |
| CGCCACCAGCAGCATTGGTT+TGG | 0.311726 | 3.4:-11449568 | None:intergenic |
| CGACATGCGTTCGCTGAAAT+AGG | 0.325418 | 3.4:-11448934 | None:intergenic |
| GATATGGGAAACAATGTAAT+AGG | 0.328449 | 3.4:+11449965 | MS.gene85538:CDS |
| TGCTTGCAAAGTGCAGCTTC+TGG | 0.331973 | 3.4:+11449757 | MS.gene85538:CDS |
| CAAGTCCATGGTCTTCCATT+TGG | 0.332640 | 3.4:+11449161 | MS.gene85538:CDS |
| AGACTCGGTTTCAAGGTTTA+GGG | 0.335047 | 3.4:-11448844 | None:intergenic |
| CCTATCCCTTGACCTACTTT+GGG | 0.336493 | 3.4:-11449194 | None:intergenic |
| GTGATTCAAGGACACAAAAC+TGG | 0.340541 | 3.4:-11449123 | None:intergenic |
| GACATTCGGCTGCATGTTAC+CGG | 0.343632 | 3.4:+11451014 | MS.gene85538:CDS |
| TCATAGCAGTGAGTTGGTTC+TGG | 0.357299 | 3.4:-11449673 | None:intergenic |
| CCCACAAATCTTAACCTTGC+TGG | 0.383915 | 3.4:+11448795 | MS.gene85538:CDS |
| TGGCCCAAGATGATGCTTAT+TGG | 0.388674 | 3.4:+11451087 | MS.gene85538:CDS |
| TGTCACAGGTGCGGCTTGCT+TGG | 0.388808 | 3.4:+11449392 | MS.gene85538:CDS |
| ATCCTTGAACACTGTTTGAT+AGG | 0.396654 | 3.4:+11448879 | MS.gene85538:CDS |
| CTCTTCCTCTACAGGTAATT+CGG | 0.397802 | 3.4:+11449781 | MS.gene85538:CDS |
| GACGCCAATAAGCATCATCT+TGG | 0.405314 | 3.4:-11451091 | None:intergenic |
| GAATGCGTGGCAACTTGAAC+CGG | 0.408709 | 3.4:+11450836 | MS.gene85538:CDS |
| GTTTGGCGTGGCACAGAGGC+AGG | 0.410640 | 3.4:-11449551 | None:intergenic |
| ACCAGCAAGGTTAAGATTTG+TGG | 0.415806 | 3.4:-11448796 | None:intergenic |
| TCCCTTGACCTACTTTGGGT+TGG | 0.416051 | 3.4:-11449190 | None:intergenic |
| CCAACTCACTGCTATGAAAC+AGG | 0.420169 | 3.4:+11449679 | MS.gene85538:CDS |
| TGATGATGGTGTTAGAAATT+GGG | 0.422542 | 3.4:+11449457 | MS.gene85538:CDS |
| CGTGGCACAGAGGCAGGGAT+GGG | 0.423260 | 3.4:-11449545 | None:intergenic |
| CCACATATCGTCCGCACATA+AGG | 0.431935 | 3.4:-11450925 | None:intergenic |
| GCGAACGCATGTCGCGTGCC+TGG | 0.435880 | 3.4:+11448943 | MS.gene85538:CDS |
| CCTTATGTGCGGACGATATG+TGG | 0.447450 | 3.4:+11450925 | MS.gene85538:CDS |
| CTTCTGGCCTCTTCCTCTAC+AGG | 0.449598 | 3.4:+11449773 | MS.gene85538:CDS |
| AAGCCGGTTTCACACAAGAT+TGG | 0.450238 | 3.4:+11449491 | MS.gene85538:CDS |
| GCGTGGCACAGAGGCAGGGA+TGG | 0.450671 | 3.4:-11449546 | None:intergenic |
| GTACCAATCTTGTGTGAAAC+CGG | 0.451896 | 3.4:-11449494 | None:intergenic |
| GACCTATCAAACAGTGTTCA+AGG | 0.452361 | 3.4:-11448881 | None:intergenic |
| CCAGACCGTCCTATAGTGCT+CGG | 0.452576 | 3.4:+11449818 | MS.gene85538:CDS |
| TCTTGTGTGAAACCGGCTTA+AGG | 0.455891 | 3.4:-11449487 | None:intergenic |
| GTGCCTGGAAGCCAGTCAAA+AGG | 0.461780 | 3.4:+11448958 | MS.gene85538:CDS |
| CCAGCAAGGTTAAGATTTGT+GGG | 0.465000 | 3.4:-11448795 | None:intergenic |
| GTTAAGATTTGTGGGATCCA+TGG | 0.466327 | 3.4:-11448787 | None:intergenic |
| GCAGGTAGCCCGAGCACTAT+AGG | 0.467447 | 3.4:-11449827 | None:intergenic |
| GTTCGCTGAAATAGGCAAAC+TGG | 0.470508 | 3.4:-11448926 | None:intergenic |
| CAAAGGAACCGTGACATCAA+TGG | 0.471896 | 3.4:-11449291 | None:intergenic |
| GCGTCTCGTGTCCTTGATGA+AGG | 0.476940 | 3.4:+11449041 | MS.gene85538:CDS |
| GTGGCACAGAGGCAGGGATG+GGG | 0.482798 | 3.4:-11449544 | None:intergenic |
| ATTGAAGGATGTCGGAGTTC+CGG | 0.483352 | 3.4:-11449633 | None:intergenic |
| GTGCGGCTTGCTTGGTCATA+CGG | 0.483738 | 3.4:+11449400 | MS.gene85538:CDS |
| GGAGAATCATTTGCTGCTGA+TGG | 0.485476 | 3.4:+11449941 | MS.gene85538:CDS |
| ACGATATGTGGGAGTGGAAG+AGG | 0.490240 | 3.4:+11450937 | MS.gene85538:CDS |
| TCAGTCTCAAATGGAACAGC+AGG | 0.490272 | 3.4:-11449845 | None:intergenic |
| GCAGGTATATCGCAGCCAAC+AGG | 0.490305 | 3.4:-11449602 | None:intergenic |
| ACAAAACTGGGAACCACACC+AGG | 0.492013 | 3.4:-11449110 | None:intergenic |
| GGAGTTCCGGTACCAGCAGC+AGG | 0.496414 | 3.4:-11449620 | None:intergenic |
| TTTGCTGCTGATGGGGATAT+GGG | 0.496695 | 3.4:+11449950 | MS.gene85538:CDS |
| TCATACGGACAAGGTGTGTC+CGG | 0.497073 | 3.4:+11449415 | MS.gene85538:CDS |
| TTGGGTTGGATGAAACCAAA+TGG | 0.500680 | 3.4:-11449176 | None:intergenic |
| TGGTCTGACTTTGTCTGAAG+AGG | 0.501622 | 3.4:+11448815 | MS.gene85538:CDS |
| GGCGCAAATGCTGTTCCTGT+TGG | 0.504615 | 3.4:+11449587 | MS.gene85538:CDS |
| GCAAGGAAATGCAAGACATT+CGG | 0.509824 | 3.4:+11451000 | MS.gene85538:CDS |
| CGTTTATGAACTTGAGGCCG+AGG | 0.515963 | 3.4:-11450798 | None:intergenic |
| GGTTTCATCCAACCCAAAGT+AGG | 0.516131 | 3.4:+11449182 | MS.gene85538:CDS |
| CGAATTACCTGTAGAGGAAG+AGG | 0.518893 | 3.4:-11449780 | None:intergenic |
| TTAAGATTTGTGGGATCCAT+GGG | 0.519569 | 3.4:-11448786 | None:intergenic |
| AAATAACGAAGAAGTGCATA+AGG | 0.520293 | 3.4:+11449868 | MS.gene85538:CDS |
| GTGTCCGGAGCTGTATGAAT+TGG | 0.521204 | 3.4:+11449430 | MS.gene85538:CDS |
| ATTTGCGCCACCAGCAGCAT+TGG | 0.521878 | 3.4:-11449573 | None:intergenic |
| GGGGTCTTGAAGCCAGCGAT+TGG | 0.526020 | 3.4:-11449525 | None:intergenic |
| GGCAAGCATACGATCATTGA+AGG | 0.529590 | 3.4:-11449648 | None:intergenic |
| TGAACTTGAGGCCGAGGTGT+AGG | 0.529993 | 3.4:-11450792 | None:intergenic |
| CGCCAAACCAATGCTGCTGG+TGG | 0.530854 | 3.4:+11449566 | MS.gene85538:CDS |
| CCTGTTTCATAGCAGTGAGT+TGG | 0.533573 | 3.4:-11449679 | None:intergenic |
| AGGAGCTAGTTACTAACTCA+TGG | 0.534186 | 3.4:+11450865 | MS.gene85538:CDS |
| CCGAGCACTATAGGACGGTC+TGG | 0.537267 | 3.4:-11449818 | None:intergenic |
| ACGCCAATAAGCATCATCTT+GGG | 0.537347 | 3.4:-11451090 | None:intergenic |
| ACGGTCTGGCAACATATTAG+AGG | 0.537727 | 3.4:-11449804 | None:intergenic |
| CCAGCAGCATTGGTTTGGCG+TGG | 0.541626 | 3.4:-11449563 | None:intergenic |
| GTACTGCTGCAACCAATCGC+TGG | 0.541819 | 3.4:+11449513 | MS.gene85538:CDS |
| CGCATGTTCAACCTTCAGAA+TGG | 0.543074 | 3.4:+11449920 | MS.gene85538:CDS |
| TATGAATTGGACTCTGATGA+TGG | 0.543306 | 3.4:+11449443 | MS.gene85538:CDS |
| GATATACCTGCTGCTGGTAC+CGG | 0.546434 | 3.4:+11449614 | MS.gene85538:CDS |
| AATGCGTGGCAACTTGAACC+GGG | 0.546767 | 3.4:+11450837 | MS.gene85538:CDS |
| ACATTCGGCTGCATGTTACC+GGG | 0.547523 | 3.4:+11451015 | MS.gene85538:CDS |
| GAGAATCATTTGCTGCTGAT+GGG | 0.548792 | 3.4:+11449942 | MS.gene85538:CDS |
| GTCAACGCGCTAAAACTCAT+TGG | 0.549620 | 3.4:+11451111 | MS.gene85538:CDS |
| TTGGGGAGCTGACCTTAAGC+CGG | 0.550680 | 3.4:+11449475 | MS.gene85538:CDS |
| GCATAAGAGTGCTTGCTGAA+TGG | 0.552056 | 3.4:-11450893 | None:intergenic |
| GGCCACTCTGAGACGCATAT+AGG | 0.552354 | 3.4:-11449270 | None:intergenic |
| GGTCTGACTTTGTCTGAAGA+GGG | 0.553936 | 3.4:+11448816 | MS.gene85538:CDS |
| CTTGTTTCAATTTCACCACA+AGG | 0.555217 | 3.4:+11449013 | MS.gene85538:CDS |
| CAAATGATTCTCCATTCTGA+AGG | 0.557019 | 3.4:-11449931 | None:intergenic |
| CCACGCCAAACCAATGCTGC+TGG | 0.559698 | 3.4:+11449563 | MS.gene85538:CDS |
| ATCCAACCCAAAGTAGGTCA+AGG | 0.560028 | 3.4:+11449188 | MS.gene85538:CDS |
| GGCGCAACACTGACAAGTAT+AGG | 0.563029 | 3.4:-11450771 | None:intergenic |
| TGCCTGGAAGCCAGTCAAAA+GGG | 0.564305 | 3.4:+11448959 | MS.gene85538:CDS |
| ATGCGTGGCAACTTGAACCG+GGG | 0.565359 | 3.4:+11450838 | MS.gene85538:CDS |
| GAGTCCAATTCATACAGCTC+CGG | 0.566714 | 3.4:-11449434 | None:intergenic |
| ATAGGATAATGATCAGAAGT+AGG | 0.567632 | 3.4:-11450753 | None:intergenic |
| GTAACTAGCTCCTTAAACCC+CGG | 0.569868 | 3.4:-11450855 | None:intergenic |
| TTTGGCGTGGCACAGAGGCA+GGG | 0.573611 | 3.4:-11449550 | None:intergenic |
| CAGAGTGGCCATTGATGTCA+CGG | 0.574064 | 3.4:+11449283 | MS.gene85538:CDS |
| CTTGCTTGGTCATACGGACA+AGG | 0.574893 | 3.4:+11449406 | MS.gene85538:CDS |
| GCCAAAATTATCCTTATGTG+CGG | 0.578805 | 3.4:+11450914 | MS.gene85538:CDS |
| AGAGGCCGAATTACCTGTAG+AGG | 0.588551 | 3.4:-11449786 | None:intergenic |
| CAGACCGTCCTATAGTGCTC+GGG | 0.589006 | 3.4:+11449819 | MS.gene85538:CDS |
| AGCAGTGAGTTGGTTCTGGA+AGG | 0.590387 | 3.4:-11449669 | None:intergenic |
| GCTAGTTACTAACTCATGGC+AGG | 0.590601 | 3.4:+11450869 | MS.gene85538:CDS |
| AAATGTCGTTTATGAACTTG+AGG | 0.592489 | 3.4:-11450804 | None:intergenic |
| CTTATGTGCGGACGATATGT+GGG | 0.594184 | 3.4:+11450926 | MS.gene85538:CDS |
| ATACGATCATTGAAGGATGT+CGG | 0.599217 | 3.4:-11449641 | None:intergenic |
| GGCTGCGATATACCTGCTGC+TGG | 0.599666 | 3.4:+11449608 | MS.gene85538:CDS |
| ACAACCACGGACCTTCATCA+AGG | 0.599966 | 3.4:-11449052 | None:intergenic |
| TGGCGTGTTCGTGCTAGTAA+CGG | 0.608633 | 3.4:+11449323 | MS.gene85538:CDS |
| GTTACGATCACAAAATCTGT+TGG | 0.611426 | 3.4:+11448981 | MS.gene85538:CDS |
| TTGGCTCGGATTTGAAGAAG+AGG | 0.612704 | 3.4:+11449894 | MS.gene85538:CDS |
| TCCAACCCAAAGTAGGTCAA+GGG | 0.615642 | 3.4:+11449189 | MS.gene85538:CDS |
| GAAGAAGTGCATAAGGACAT+TGG | 0.620210 | 3.4:+11449875 | MS.gene85538:CDS |
| TGATTCAAGGACACAAAACT+GGG | 0.621020 | 3.4:-11449122 | None:intergenic |
| AGTGCATAAGGACATTGGCT+CGG | 0.627151 | 3.4:+11449880 | MS.gene85538:CDS |
| GTGCGGACGATATGTGGGAG+TGG | 0.629111 | 3.4:+11450931 | MS.gene85538:CDS |
| CCCAAAGTAGGTCAAGGGAT+AGG | 0.631660 | 3.4:+11449194 | MS.gene85538:CDS |
| GGATCGAATCAACCCTGGTG+TGG | 0.631726 | 3.4:+11449097 | MS.gene85538:CDS |
| CACGAGACGCATCCACCTTG+TGG | 0.636445 | 3.4:-11449028 | None:intergenic |
| TGCTATTGTTGAGACTCTTG+TGG | 0.642175 | 3.4:+11450728 | MS.gene85538:intron |
| ATTGGTTTGGCGTGGCACAG+AGG | 0.649419 | 3.4:-11449555 | None:intergenic |
| TGAAACCAAATGGAAGACCA+TGG | 0.650045 | 3.4:-11449166 | None:intergenic |
| GATGATGGTGTTAGAAATTG+GGG | 0.652352 | 3.4:+11449458 | MS.gene85538:CDS |
| TCAGTGTTGCGCCTACACCT+CGG | 0.653724 | 3.4:+11450781 | MS.gene85538:CDS |
| AGAATCATTTGCTGCTGATG+GGG | 0.663812 | 3.4:+11449943 | MS.gene85538:CDS |
| GGATATCGAAGATTGTCGCA+AGG | 0.665379 | 3.4:+11450983 | MS.gene85538:CDS |
| CATTCGGCTGCATGTTACCG+GGG | 0.669836 | 3.4:+11451016 | MS.gene85538:CDS |
| ACTGGATTTCACGATCAGCA+AGG | 0.672093 | 3.4:-11448908 | None:intergenic |
| GCTATGGATCGAATCAACCC+TGG | 0.674227 | 3.4:+11449092 | MS.gene85538:CDS |
| TGAAAATTATCATACAACCA+CGG | 0.679439 | 3.4:-11449065 | None:intergenic |
| TGCCTATATGCGTCTCAGAG+TGG | 0.682455 | 3.4:+11449268 | MS.gene85538:CDS |
| GTTTCAATTTCACCACAAGG+TGG | 0.685119 | 3.4:+11449016 | MS.gene85538:CDS |
| CAGACAAAGTCAGACCAGCA+AGG | 0.687776 | 3.4:-11448809 | None:intergenic |
| TCGGCTGCATGTTACCGGGG+AGG | 0.698889 | 3.4:+11451019 | MS.gene85538:CDS |
| GTGTCCTTGATGAAGGTCCG+TGG | 0.705004 | 3.4:+11449048 | MS.gene85538:CDS |
| GTAGCCCGAGCACTATAGGA+CGG | 0.709360 | 3.4:-11449823 | None:intergenic |
| GGTACTCTTAAGGCATACGA+TGG | 0.724968 | 3.4:+11449227 | MS.gene85538:CDS |
| CAAAACTGGGAACCACACCA+GGG | 0.753147 | 3.4:-11449109 | None:intergenic |
| TGAGACGCATATAGGCACTG+TGG | 0.782941 | 3.4:-11449262 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATTGTAATAAAATAAAA+AGG | + | chr3.4:11450961-11450980 | MS.gene85538:CDS | 10.0% |
| !! | TCATTGTAATAAAATAAAAA+GGG | + | chr3.4:11450962-11450981 | MS.gene85538:CDS | 10.0% |
| !!! | AATTTTAAATATGAGAAATT+GGG | + | chr3.4:11449362-11449381 | MS.gene85538:CDS | 10.0% |
| !!! | TAATTTTAAATATGAGAAAT+TGG | + | chr3.4:11449361-11449380 | MS.gene85538:CDS | 10.0% |
| !! | AGTATTATTTACAAGTTCAA+CGG | - | chr3.4:11450364-11450383 | None:intergenic | 20.0% |
| !!! | TGATAATTTTCATATTGCTA+TGG | + | chr3.4:11449076-11449095 | MS.gene85538:CDS | 20.0% |
| ! | GAACTTGTAAATAATACTCT+TGG | + | chr3.4:11450366-11450385 | MS.gene85538:intron | 25.0% |
| ! | TATACTTGGTTTAAAAGTCT+TGG | + | chr3.4:11450633-11450652 | MS.gene85538:intron | 25.0% |
| ! | TGAAAATTATCATACAACCA+CGG | - | chr3.4:11449068-11449087 | None:intergenic | 25.0% |
| !! | AAGACTTTTAAACCAAGTAT+AGG | - | chr3.4:11450634-11450653 | None:intergenic | 25.0% |
| !! | AGACTTTTAAACCAAGTATA+GGG | - | chr3.4:11450633-11450652 | None:intergenic | 25.0% |
| !!! | TACAAAGTTTTTTCATGCTT+CGG | + | chr3.4:11451154-11451173 | MS.gene85538:intron | 25.0% |
| AAAACTCATTGGTACAAAGA+TGG | + | chr3.4:11451122-11451141 | MS.gene85538:intron | 30.0% | |
| AAATCACCAAATATACACCA+CGG | - | chr3.4:11450489-11450508 | None:intergenic | 30.0% | |
| AATGCAGCATATGCTAAAAA+AGG | + | chr3.4:11449719-11449738 | MS.gene85538:CDS | 30.0% | |
| ACATCTTGCTCATCAAAAAA+AGG | - | chr3.4:11450040-11450059 | None:intergenic | 30.0% | |
| ATAGGAACAAATGTTAGTCA+TGG | + | chr3.4:11449983-11450002 | MS.gene85538:intron | 30.0% | |
| ATAGGATAATGATCAGAAGT+AGG | - | chr3.4:11450756-11450775 | None:intergenic | 30.0% | |
| GATATGGGAAACAATGTAAT+AGG | + | chr3.4:11449965-11449984 | MS.gene85538:CDS | 30.0% | |
| GCATATGCTAAAAAAGGTAA+CGG | + | chr3.4:11449725-11449744 | MS.gene85538:CDS | 30.0% | |
| TAAATAATACTCTTGGCACT+TGG | + | chr3.4:11450373-11450392 | MS.gene85538:intron | 30.0% | |
| TAGGAACAAATGTTAGTCAT+GGG | + | chr3.4:11449984-11450003 | MS.gene85538:intron | 30.0% | |
| ! | AAATAACGAAGAAGTGCATA+AGG | + | chr3.4:11449868-11449887 | MS.gene85538:CDS | 30.0% |
| ! | AAATGTCGTTTATGAACTTG+AGG | - | chr3.4:11450807-11450826 | None:intergenic | 30.0% |
| ! | AAGTTTTCTAGGTACTCTTA+AGG | + | chr3.4:11449217-11449236 | MS.gene85538:CDS | 30.0% |
| ! | TTTAGCATATGCTGCATTTT+GGG | - | chr3.4:11449717-11449736 | None:intergenic | 30.0% |
| ! | TTTTAGCATATGCTGCATTT+TGG | - | chr3.4:11449718-11449737 | None:intergenic | 30.0% |
| ! | TTTTGATGAGCAAGATGTAA+TGG | + | chr3.4:11450042-11450061 | MS.gene85538:intron | 30.0% |
| !! | TCGTTATTTTCAGTCTCAAA+TGG | - | chr3.4:11449857-11449876 | None:intergenic | 30.0% |
| !! | TGATGATGGTGTTAGAAATT+GGG | + | chr3.4:11449457-11449476 | MS.gene85538:CDS | 30.0% |
| !!! | CTTGAATCACATCGATTTTT+GGG | + | chr3.4:11449136-11449155 | MS.gene85538:CDS | 30.0% |
| AGAGTCTCAACAATAGCATT+TGG | - | chr3.4:11450726-11450745 | None:intergenic | 35.0% | |
| AGCTTCGAAAAAGAATGCAA+CGG | + | chr3.4:11451060-11451079 | MS.gene85538:CDS | 35.0% | |
| AGGAACAAATGTTAGTCATG+GGG | + | chr3.4:11449985-11450004 | MS.gene85538:intron | 35.0% | |
| ATACGATCATTGAAGGATGT+CGG | - | chr3.4:11449644-11449663 | None:intergenic | 35.0% | |
| ATCCTTGAACACTGTTTGAT+AGG | + | chr3.4:11448879-11448898 | MS.gene85538:CDS | 35.0% | |
| ATTAGGATAGCCATAATAGC+CGG | - | chr3.4:11450406-11450425 | None:intergenic | 35.0% | |
| CAAATGATTCTCCATTCTGA+AGG | - | chr3.4:11449934-11449953 | None:intergenic | 35.0% | |
| CATCATCAAGAGAAGTTATG+CGG | - | chr3.4:11451202-11451221 | None:intergenic | 35.0% | |
| CCAAAAATCGATGTGATTCA+AGG | - | chr3.4:11449138-11449157 | None:intergenic | 35.0% | |
| CTTGTTTCAATTTCACCACA+AGG | + | chr3.4:11449013-11449032 | MS.gene85538:CDS | 35.0% | |
| GAAATTGAGTGGAAAGTTGT+CGG | - | chr3.4:11450461-11450480 | None:intergenic | 35.0% | |
| GAGTCTCACTAAGGAATAAA+AGG | - | chr3.4:11450188-11450207 | None:intergenic | 35.0% | |
| GCCAAAATTATCCTTATGTG+CGG | + | chr3.4:11450914-11450933 | MS.gene85538:CDS | 35.0% | |
| GTATAGGGATATCCTTCAAT+CGG | - | chr3.4:11450618-11450637 | None:intergenic | 35.0% | |
| GTTACGATCACAAAATCTGT+TGG | + | chr3.4:11448981-11449000 | MS.gene85538:CDS | 35.0% | |
| TATAGGGATATCCTTCAATC+GGG | - | chr3.4:11450617-11450636 | None:intergenic | 35.0% | |
| TATGAATTGGACTCTGATGA+TGG | + | chr3.4:11449443-11449462 | MS.gene85538:CDS | 35.0% | |
| TATTATGGCTATCCTAATGG+AGG | + | chr3.4:11450408-11450427 | MS.gene85538:intron | 35.0% | |
| TCACTAAGGAATAAAAGGTC+CGG | - | chr3.4:11450183-11450202 | None:intergenic | 35.0% | |
| TGATTCAAGGACACAAAACT+GGG | - | chr3.4:11449125-11449144 | None:intergenic | 35.0% | |
| TTGAAGGATATCCCTATACT+TGG | + | chr3.4:11450619-11450638 | MS.gene85538:intron | 35.0% | |
| ! | CGGTTCCTTTGAAAAAAGAA+TGG | + | chr3.4:11449303-11449322 | MS.gene85538:CDS | 35.0% |
| ! | GATAGCAGTATTTTCAGACT+CGG | - | chr3.4:11448862-11448881 | None:intergenic | 35.0% |
| ! | GATGATGGTGTTAGAAATTG+GGG | + | chr3.4:11449458-11449477 | MS.gene85538:CDS | 35.0% |
| ! | TCCGCACATAAGGATAATTT+TGG | - | chr3.4:11450918-11450937 | None:intergenic | 35.0% |
| ! | TTATGCGGTTTACCTTTTTC+CGG | - | chr3.4:11451187-11451206 | None:intergenic | 35.0% |
| !! | ACTTCTCTTGATGATGATGT+AGG | + | chr3.4:11451206-11451225 | MS.gene85538:intron | 35.0% |
| !! | CTGATGATGGTGTTAGAAAT+TGG | + | chr3.4:11449456-11449475 | MS.gene85538:CDS | 35.0% |
| !! | TATTTTCAGACTCGGTTTCA+AGG | - | chr3.4:11448854-11448873 | None:intergenic | 35.0% |
| !! | TGGTGATTTTAACGACATCT+TGG | + | chr3.4:11450500-11450519 | MS.gene85538:intron | 35.0% |
| !!! | AATTGGGTGTTTTTTGTCAC+AGG | + | chr3.4:11449378-11449397 | MS.gene85538:CDS | 35.0% |
| !!! | ACACGCCATTCTTTTTTCAA+AGG | - | chr3.4:11449311-11449330 | None:intergenic | 35.0% |
| !!! | CCTTGAATCACATCGATTTT+TGG | + | chr3.4:11449135-11449154 | MS.gene85538:CDS | 35.0% |
| AACAAATGTTAGTCATGGGG+GGG | + | chr3.4:11449988-11450007 | MS.gene85538:intron | 40.0% | |
| ACCAGCAAGGTTAAGATTTG+TGG | - | chr3.4:11448799-11448818 | None:intergenic | 40.0% | |
| ACGCCAATAAGCATCATCTT+GGG | - | chr3.4:11451093-11451112 | None:intergenic | 40.0% | |
| AGGAGCTAGTTACTAACTCA+TGG | + | chr3.4:11450865-11450884 | MS.gene85538:CDS | 40.0% | |
| CAACTTTCCACTCAATTTCC+AGG | + | chr3.4:11450462-11450481 | MS.gene85538:intron | 40.0% | |
| CAGACCTTAAGTACCTAGTT+CGG | + | chr3.4:11450148-11450167 | MS.gene85538:intron | 40.0% | |
| CCAAAATAAAGCTAAACCCC+CGG | - | chr3.4:11450292-11450311 | None:intergenic | 40.0% | |
| CCAGCAAGGTTAAGATTTGT+GGG | - | chr3.4:11448798-11448817 | None:intergenic | 40.0% | |
| CGAAATCCGTTTATAAGCCA+TGG | - | chr3.4:11450561-11450580 | None:intergenic | 40.0% | |
| CGTTCTCCATGGCTTATAAA+CGG | + | chr3.4:11450552-11450571 | MS.gene85538:intron | 40.0% | |
| CTCTTCCTCTACAGGTAATT+CGG | + | chr3.4:11449781-11449800 | MS.gene85538:CDS | 40.0% | |
| GAACAAATGTTAGTCATGGG+GGG | + | chr3.4:11449987-11450006 | MS.gene85538:intron | 40.0% | |
| GAAGAACTTCGTTGTTTGCT+TGG | + | chr3.4:11450228-11450247 | MS.gene85538:intron | 40.0% | |
| GACCTATCAAACAGTGTTCA+AGG | - | chr3.4:11448884-11448903 | None:intergenic | 40.0% | |
| GCAAGGAAATGCAAGACATT+CGG | + | chr3.4:11451000-11451019 | MS.gene85538:CDS | 40.0% | |
| GGAACAAATGTTAGTCATGG+GGG | + | chr3.4:11449986-11450005 | MS.gene85538:intron | 40.0% | |
| GGCTATTATGGCTATCCTAA+TGG | + | chr3.4:11450405-11450424 | MS.gene85538:intron | 40.0% | |
| GTACCAATCTTGTGTGAAAC+CGG | - | chr3.4:11449497-11449516 | None:intergenic | 40.0% | |
| GTGATTCAAGGACACAAAAC+TGG | - | chr3.4:11449126-11449145 | None:intergenic | 40.0% | |
| GTTTCAATTTCACCACAAGG+TGG | + | chr3.4:11449016-11449035 | MS.gene85538:CDS | 40.0% | |
| TGAAACCAAATGGAAGACCA+TGG | - | chr3.4:11449169-11449188 | None:intergenic | 40.0% | |
| TGCTATTGTTGAGACTCTTG+TGG | + | chr3.4:11450728-11450747 | MS.gene85538:intron | 40.0% | |
| TTGTCGGAGAAAATTCCAAG+CGG | - | chr3.4:11450445-11450464 | None:intergenic | 40.0% | |
| ! | AGAATCATTTGCTGCTGATG+GGG | + | chr3.4:11449943-11449962 | MS.gene85538:CDS | 40.0% |
| ! | AGACTCGGTTTCAAGGTTTA+GGG | - | chr3.4:11448847-11448866 | None:intergenic | 40.0% |
| ! | ATTTTCGCTATGAGAATGCG+TGG | + | chr3.4:11450823-11450842 | MS.gene85538:CDS | 40.0% |
| ! | CAAGGGATAGGAAGTTTTCT+AGG | + | chr3.4:11449206-11449225 | MS.gene85538:CDS | 40.0% |
| ! | GAAGAAGTGCATAAGGACAT+TGG | + | chr3.4:11449875-11449894 | MS.gene85538:CDS | 40.0% |
| ! | GAGAATCATTTGCTGCTGAT+GGG | + | chr3.4:11449942-11449961 | MS.gene85538:CDS | 40.0% |
| ! | GCGCACTTGCTAATGATTTA+TGG | + | chr3.4:11450688-11450707 | MS.gene85538:intron | 40.0% |
| ! | TATGCGGTTTACCTTTTTCC+GGG | - | chr3.4:11451186-11451205 | None:intergenic | 40.0% |
| ! | TTAAGGTCTGGAATTGCACT+CGG | - | chr3.4:11450138-11450157 | None:intergenic | 40.0% |
| !! | TTGGGTTGGATGAAACCAAA+TGG | - | chr3.4:11449179-11449198 | None:intergenic | 40.0% |
| AAAAAGAATGCAACGGCTGC+TGG | + | chr3.4:11451067-11451086 | MS.gene85538:CDS | 45.0% | |
| ACGGTCTGGCAACATATTAG+AGG | - | chr3.4:11449807-11449826 | None:intergenic | 45.0% | |
| ACTGGATTTCACGATCAGCA+AGG | - | chr3.4:11448911-11448930 | None:intergenic | 45.0% | |
| ATCCAACCCAAAGTAGGTCA+AGG | + | chr3.4:11449188-11449207 | MS.gene85538:CDS | 45.0% | |
| ATTGAAGGATGTCGGAGTTC+CGG | - | chr3.4:11449636-11449655 | None:intergenic | 45.0% | |
| CAAAGGAACCGTGACATCAA+TGG | - | chr3.4:11449294-11449313 | None:intergenic | 45.0% | |
| CAAGTCCATGGTCTTCCATT+TGG | + | chr3.4:11449161-11449180 | MS.gene85538:CDS | 45.0% | |
| CCAACTCACTGCTATGAAAC+AGG | + | chr3.4:11449679-11449698 | MS.gene85538:CDS | 45.0% | |
| CCCACAAATCTTAACCTTGC+TGG | + | chr3.4:11448795-11448814 | MS.gene85538:CDS | 45.0% | |
| CCTATCCCTTGACCTACTTT+GGG | - | chr3.4:11449197-11449216 | None:intergenic | 45.0% | |
| CCTGTTTCATAGCAGTGAGT+TGG | - | chr3.4:11449682-11449701 | None:intergenic | 45.0% | |
| CGAACTAGGTACTTAAGGTC+TGG | - | chr3.4:11450150-11450169 | None:intergenic | 45.0% | |
| CGAATTACCTGTAGAGGAAG+AGG | - | chr3.4:11449783-11449802 | None:intergenic | 45.0% | |
| CGCATGTTCAACCTTCAGAA+TGG | + | chr3.4:11449920-11449939 | MS.gene85538:CDS | 45.0% | |
| CTAAACTCATTTGCCTAGGC+AGG | - | chr3.4:11450086-11450105 | None:intergenic | 45.0% | |
| CTTATGTGCGGACGATATGT+GGG | + | chr3.4:11450926-11450945 | MS.gene85538:CDS | 45.0% | |
| CTTGGACACCAGTGAGAAAA+GGG | + | chr3.4:11450518-11450537 | MS.gene85538:intron | 45.0% | |
| GACGCCAATAAGCATCATCT+TGG | - | chr3.4:11451094-11451113 | None:intergenic | 45.0% | |
| GAGTCCAATTCATACAGCTC+CGG | - | chr3.4:11449437-11449456 | None:intergenic | 45.0% | |
| GATGAGCAAGATGTAATGGC+AGG | + | chr3.4:11450046-11450065 | MS.gene85538:intron | 45.0% | |
| GCCACTAAACTCATTTGCCT+AGG | - | chr3.4:11450090-11450109 | None:intergenic | 45.0% | |
| GCCTAGGCAAATGAGTTTAG+TGG | + | chr3.4:11450086-11450105 | MS.gene85538:intron | 45.0% | |
| GCTAGTTACTAACTCATGGC+AGG | + | chr3.4:11450869-11450888 | MS.gene85538:CDS | 45.0% | |
| GGATATCGAAGATTGTCGCA+AGG | + | chr3.4:11450983-11451002 | MS.gene85538:CDS | 45.0% | |
| GGCAAATGAGTTTAGTGGCA+TGG | + | chr3.4:11450091-11450110 | MS.gene85538:intron | 45.0% | |
| GGCAAGCATACGATCATTGA+AGG | - | chr3.4:11449651-11449670 | None:intergenic | 45.0% | |
| GGTACTCTTAAGGCATACGA+TGG | + | chr3.4:11449227-11449246 | MS.gene85538:CDS | 45.0% | |
| GGTCTGACTTTGTCTGAAGA+GGG | + | chr3.4:11448816-11448835 | MS.gene85538:CDS | 45.0% | |
| GGTTTCATCCAACCCAAAGT+AGG | + | chr3.4:11449182-11449201 | MS.gene85538:CDS | 45.0% | |
| GTAACTAGCTCCTTAAACCC+CGG | - | chr3.4:11450858-11450877 | None:intergenic | 45.0% | |
| GTCAACGCGCTAAAACTCAT+TGG | + | chr3.4:11451111-11451130 | MS.gene85538:CDS | 45.0% | |
| GTTCGCTGAAATAGGCAAAC+TGG | - | chr3.4:11448929-11448948 | None:intergenic | 45.0% | |
| GTTTAGTGGCATGGAATTGC+CGG | + | chr3.4:11450100-11450119 | MS.gene85538:intron | 45.0% | |
| TATAAGCCATGGAGAACGCA+TGG | - | chr3.4:11450550-11450569 | None:intergenic | 45.0% | |
| TCAGTCTCAAATGGAACAGC+AGG | - | chr3.4:11449848-11449867 | None:intergenic | 45.0% | |
| TCCAACCCAAAGTAGGTCAA+GGG | + | chr3.4:11449189-11449208 | MS.gene85538:CDS | 45.0% | |
| TCCTATCCCTTGACCTACTT+TGG | - | chr3.4:11449198-11449217 | None:intergenic | 45.0% | |
| TCTTGGACACCAGTGAGAAA+AGG | + | chr3.4:11450517-11450536 | MS.gene85538:intron | 45.0% | |
| TGGCCCAAGATGATGCTTAT+TGG | + | chr3.4:11451087-11451106 | MS.gene85538:CDS | 45.0% | |
| TGGTCTGACTTTGTCTGAAG+AGG | + | chr3.4:11448815-11448834 | MS.gene85538:CDS | 45.0% | |
| TGTGAGCTAGAGTCTCACTA+AGG | - | chr3.4:11450197-11450216 | None:intergenic | 45.0% | |
| TTATCTGACGTCCCGATTGA+AGG | + | chr3.4:11450603-11450622 | MS.gene85538:intron | 45.0% | |
| TTGGACACCAGTGAGAAAAG+GGG | + | chr3.4:11450519-11450538 | MS.gene85538:intron | 45.0% | |
| TTTAGTGGCATGGAATTGCC+GGG | + | chr3.4:11450101-11450120 | MS.gene85538:intron | 45.0% | |
| TTTGCTGCTGATGGGGATAT+GGG | + | chr3.4:11449950-11449969 | MS.gene85538:CDS | 45.0% | |
| ! | AAGCCGGTTTCACACAAGAT+TGG | + | chr3.4:11449491-11449510 | MS.gene85538:CDS | 45.0% |
| ! | AGTGCATAAGGACATTGGCT+CGG | + | chr3.4:11449880-11449899 | MS.gene85538:CDS | 45.0% |
| ! | AGTGCCGAACTAGGTACTTA+AGG | - | chr3.4:11450155-11450174 | None:intergenic | 45.0% |
| ! | ATTTGCTGCTGATGGGGATA+TGG | + | chr3.4:11449949-11449968 | MS.gene85538:CDS | 45.0% |
| ! | CAGACTCGGTTTCAAGGTTT+AGG | - | chr3.4:11448848-11448867 | None:intergenic | 45.0% |
| ! | GGAGAATCATTTGCTGCTGA+TGG | + | chr3.4:11449941-11449960 | MS.gene85538:CDS | 45.0% |
| ! | GTGATCGTAACCCTTTTGAC+TGG | - | chr3.4:11448972-11448991 | None:intergenic | 45.0% |
| ! | TAAGGTCTGGAATTGCACTC+GGG | - | chr3.4:11450137-11450156 | None:intergenic | 45.0% |
| ! | TCTTGTGTGAAACCGGCTTA+AGG | - | chr3.4:11449490-11449509 | None:intergenic | 45.0% |
| ! | TGTTTTCATGTAGACCGCAC+CGG | + | chr3.4:11450261-11450280 | MS.gene85538:intron | 45.0% |
| !! | GCATAAGAGTGCTTGCTGAA+TGG | - | chr3.4:11450896-11450915 | None:intergenic | 45.0% |
| !! | TCATAGCAGTGAGTTGGTTC+TGG | - | chr3.4:11449676-11449695 | None:intergenic | 45.0% |
| !! | TTGGCTCGGATTTGAAGAAG+AGG | + | chr3.4:11449894-11449913 | MS.gene85538:CDS | 45.0% |
| !!! | CCGGGGGTTTAGCTTTATTT+TGG | + | chr3.4:11450289-11450308 | MS.gene85538:intron | 45.0% |
| !!! | GATTTTTGGGTGCAAGTCCA+TGG | + | chr3.4:11449149-11449168 | MS.gene85538:CDS | 45.0% |
| !!! | GGTGTTTTTTGTCACAGGTG+CGG | + | chr3.4:11449383-11449402 | MS.gene85538:CDS | 45.0% |
| AATGCGTGGCAACTTGAACC+GGG | + | chr3.4:11450837-11450856 | MS.gene85538:CDS | 50.0% | |
| AATGGCAGGTCCTGATGATC+AGG | + | chr3.4:11450060-11450079 | MS.gene85538:intron | 50.0% | |
| ACAAAACTGGGAACCACACC+AGG | - | chr3.4:11449113-11449132 | None:intergenic | 50.0% | |
| ACAACCACGGACCTTCATCA+AGG | - | chr3.4:11449055-11449074 | None:intergenic | 50.0% | |
| ACATTCGGCTGCATGTTACC+GGG | + | chr3.4:11451015-11451034 | MS.gene85538:CDS | 50.0% | |
| ACGATATGTGGGAGTGGAAG+AGG | + | chr3.4:11450937-11450956 | MS.gene85538:CDS | 50.0% | |
| AGAGGCCGAATTACCTGTAG+AGG | - | chr3.4:11449789-11449808 | None:intergenic | 50.0% | |
| CAAAACTGGGAACCACACCA+GGG | - | chr3.4:11449112-11449131 | None:intergenic | 50.0% | |
| CAGACAAAGTCAGACCAGCA+AGG | - | chr3.4:11448812-11448831 | None:intergenic | 50.0% | |
| CAGAGTGGCCATTGATGTCA+CGG | + | chr3.4:11449283-11449302 | MS.gene85538:CDS | 50.0% | |
| CCAAATATACACCACGGACC+TGG | - | chr3.4:11450483-11450502 | None:intergenic | 50.0% | |
| CCACATATCGTCCGCACATA+AGG | - | chr3.4:11450928-11450947 | None:intergenic | 50.0% | |
| CCAGGTCCGTGGTGTATATT+TGG | + | chr3.4:11450480-11450499 | MS.gene85538:intron | 50.0% | |
| CCCAAAGTAGGTCAAGGGAT+AGG | + | chr3.4:11449194-11449213 | MS.gene85538:CDS | 50.0% | |
| CCTAGTTCGGCACTTCAATC+CGG | + | chr3.4:11450161-11450180 | MS.gene85538:intron | 50.0% | |
| CCTTATGTGCGGACGATATG+TGG | + | chr3.4:11450925-11450944 | MS.gene85538:CDS | 50.0% | |
| CGACATGCGTTCGCTGAAAT+AGG | - | chr3.4:11448937-11448956 | None:intergenic | 50.0% | |
| CGTCGAGCTGTTCTTGATTC+AGG | + | chr3.4:11450579-11450598 | MS.gene85538:intron | 50.0% | |
| CGTTTATGAACTTGAGGCCG+AGG | - | chr3.4:11450801-11450820 | None:intergenic | 50.0% | |
| CTTGCTTGGTCATACGGACA+AGG | + | chr3.4:11449406-11449425 | MS.gene85538:CDS | 50.0% | |
| GAATGCGTGGCAACTTGAAC+CGG | + | chr3.4:11450836-11450855 | MS.gene85538:CDS | 50.0% | |
| GACATTCGGCTGCATGTTAC+CGG | + | chr3.4:11451014-11451033 | MS.gene85538:CDS | 50.0% | |
| GATATACCTGCTGCTGGTAC+CGG | + | chr3.4:11449614-11449633 | MS.gene85538:CDS | 50.0% | |
| GCAACTTGAACCGGGGTTTA+AGG | + | chr3.4:11450845-11450864 | MS.gene85538:CDS | 50.0% | |
| GCTATGGATCGAATCAACCC+TGG | + | chr3.4:11449092-11449111 | MS.gene85538:CDS | 50.0% | |
| GCTGTTCTACGACCTCCATT+AGG | - | chr3.4:11450423-11450442 | None:intergenic | 50.0% | |
| GGCGCAACACTGACAAGTAT+AGG | - | chr3.4:11450774-11450793 | None:intergenic | 50.0% | |
| GTGTCCGGAGCTGTATGAAT+TGG | + | chr3.4:11449430-11449449 | MS.gene85538:CDS | 50.0% | |
| TCATACGGACAAGGTGTGTC+CGG | + | chr3.4:11449415-11449434 | MS.gene85538:CDS | 50.0% | |
| TCCCTTGACCTACTTTGGGT+TGG | - | chr3.4:11449193-11449212 | None:intergenic | 50.0% | |
| TGCCTATATGCGTCTCAGAG+TGG | + | chr3.4:11449268-11449287 | MS.gene85538:CDS | 50.0% | |
| TGCCTGGAAGCCAGTCAAAA+GGG | + | chr3.4:11448959-11448978 | MS.gene85538:CDS | 50.0% | |
| TGCTTGCAAAGTGCAGCTTC+TGG | + | chr3.4:11449757-11449776 | MS.gene85538:CDS | 50.0% | |
| TGGACACCAGTGAGAAAAGG+GGG | + | chr3.4:11450520-11450539 | MS.gene85538:intron | 50.0% | |
| TGGCGTGTTCGTGCTAGTAA+CGG | + | chr3.4:11449323-11449342 | MS.gene85538:CDS | 50.0% | |
| TTAGTGGCATGGAATTGCCG+GGG | + | chr3.4:11450102-11450121 | MS.gene85538:intron | 50.0% | |
| ! | TGAGACGCATATAGGCACTG+TGG | - | chr3.4:11449265-11449284 | None:intergenic | 50.0% |
| ! | TGGCGTCTTACCGGCTATTA+TGG | + | chr3.4:11450393-11450412 | MS.gene85538:intron | 50.0% |
| !! | AGCAGTGAGTTGGTTCTGGA+AGG | - | chr3.4:11449672-11449691 | None:intergenic | 50.0% |
| !! | CATGCGATTTTGATCCTCCC+CGG | - | chr3.4:11451036-11451055 | None:intergenic | 50.0% |
| !!! | AACCCTTTTGACTGGCTTCC+AGG | - | chr3.4:11448964-11448983 | None:intergenic | 50.0% |
| AACCTTTCTTCCACCGCACG+CGG | - | chr3.4:11450663-11450682 | None:intergenic | 55.0% | |
| ATGCGTGGCAACTTGAACCG+GGG | + | chr3.4:11450838-11450857 | MS.gene85538:CDS | 55.0% | |
| ATTTGCGCCACCAGCAGCAT+TGG | - | chr3.4:11449576-11449595 | None:intergenic | 55.0% | |
| CAGACCGTCCTATAGTGCTC+GGG | + | chr3.4:11449819-11449838 | MS.gene85538:CDS | 55.0% | |
| CATTCGGCTGCATGTTACCG+GGG | + | chr3.4:11451016-11451035 | MS.gene85538:CDS | 55.0% | |
| CCACGGACCTGGAAATTGAG+TGG | - | chr3.4:11450472-11450491 | None:intergenic | 55.0% | |
| CCACTCAATTTCCAGGTCCG+TGG | + | chr3.4:11450469-11450488 | MS.gene85538:intron | 55.0% | |
| CCAGACCGTCCTATAGTGCT+CGG | + | chr3.4:11449818-11449837 | MS.gene85538:CDS | 55.0% | |
| CTTCTGGCCTCTTCCTCTAC+AGG | + | chr3.4:11449773-11449792 | MS.gene85538:CDS | 55.0% | |
| CTTGGCACTTGGCGTCTTAC+CGG | + | chr3.4:11450384-11450403 | MS.gene85538:intron | 55.0% | |
| GCAGGTATATCGCAGCCAAC+AGG | - | chr3.4:11449605-11449624 | None:intergenic | 55.0% | |
| GCGTCTCGTGTCCTTGATGA+AGG | + | chr3.4:11449041-11449060 | MS.gene85538:CDS | 55.0% | |
| GGATCGAATCAACCCTGGTG+TGG | + | chr3.4:11449097-11449116 | MS.gene85538:CDS | 55.0% | |
| GGCGCAAATGCTGTTCCTGT+TGG | + | chr3.4:11449587-11449606 | MS.gene85538:CDS | 55.0% | |
| GTACTGCTGCAACCAATCGC+TGG | + | chr3.4:11449513-11449532 | MS.gene85538:CDS | 55.0% | |
| GTAGCCCGAGCACTATAGGA+CGG | - | chr3.4:11449826-11449845 | None:intergenic | 55.0% | |
| GTGCCTGGAAGCCAGTCAAA+AGG | + | chr3.4:11448958-11448977 | MS.gene85538:CDS | 55.0% | |
| GTGTCCTTGATGAAGGTCCG+TGG | + | chr3.4:11449048-11449067 | MS.gene85538:CDS | 55.0% | |
| TCAGTGTTGCGCCTACACCT+CGG | + | chr3.4:11450781-11450800 | MS.gene85538:CDS | 55.0% | |
| TGAACTTGAGGCCGAGGTGT+AGG | - | chr3.4:11450795-11450814 | None:intergenic | 55.0% | |
| TTCATGCTTCGGCAACAGCC+CGG | + | chr3.4:11451165-11451184 | MS.gene85538:intron | 55.0% | |
| TTCGGCAACAGCCCGGAAAA+AGG | + | chr3.4:11451172-11451191 | MS.gene85538:intron | 55.0% | |
| TTGGGGAGCTGACCTTAAGC+CGG | + | chr3.4:11449475-11449494 | MS.gene85538:CDS | 55.0% | |
| ! | GTGCGGCTTGCTTGGTCATA+CGG | + | chr3.4:11449400-11449419 | MS.gene85538:CDS | 55.0% |
| !! | ATTGGTTTGGCGTGGCACAG+AGG | - | chr3.4:11449558-11449577 | None:intergenic | 55.0% |
| !! | CCGGATTGAAGTGCCGAACT+AGG | - | chr3.4:11450164-11450183 | None:intergenic | 55.0% |
| !! | GGCCACTCTGAGACGCATAT+AGG | - | chr3.4:11449273-11449292 | None:intergenic | 55.0% |
| ACCTTTCTTCCACCGCACGC+GGG | - | chr3.4:11450662-11450681 | None:intergenic | 60.0% | |
| AGCTAAACCCCCGGCTCTAC+CGG | - | chr3.4:11450283-11450302 | None:intergenic | 60.0% | |
| CACGAGACGCATCCACCTTG+TGG | - | chr3.4:11449031-11449050 | None:intergenic | 60.0% | |
| CCACGCCAAACCAATGCTGC+TGG | + | chr3.4:11449563-11449582 | MS.gene85538:CDS | 60.0% | |
| CCGAGCACTATAGGACGGTC+TGG | - | chr3.4:11449821-11449840 | None:intergenic | 60.0% | |
| CCTAGGCAGGCCTGATCATC+AGG | - | chr3.4:11450073-11450092 | None:intergenic | 60.0% | |
| CCTGATGATCAGGCCTGCCT+AGG | + | chr3.4:11450070-11450089 | MS.gene85538:intron | 60.0% | |
| CGCCAAACCAATGCTGCTGG+TGG | + | chr3.4:11449566-11449585 | MS.gene85538:CDS | 60.0% | |
| GAGGTCGTAGAACAGCCGCT+TGG | + | chr3.4:11450427-11450446 | MS.gene85538:intron | 60.0% | |
| GCAGGTAGCCCGAGCACTAT+AGG | - | chr3.4:11449830-11449849 | None:intergenic | 60.0% | |
| GCATGGAATTGCCGGGGTGT+AGG | + | chr3.4:11450108-11450127 | MS.gene85538:intron | 60.0% | |
| GGCTGCGATATACCTGCTGC+TGG | + | chr3.4:11449608-11449627 | MS.gene85538:CDS | 60.0% | |
| GGGGTCTTGAAGCCAGCGAT+TGG | - | chr3.4:11449528-11449547 | None:intergenic | 60.0% | |
| GTGCGGACGATATGTGGGAG+TGG | + | chr3.4:11450931-11450950 | MS.gene85538:CDS | 60.0% | |
| TTTGGCGTGGCACAGAGGCA+GGG | - | chr3.4:11449553-11449572 | None:intergenic | 60.0% | |
| ! | TGTCACAGGTGCGGCTTGCT+TGG | + | chr3.4:11449392-11449411 | MS.gene85538:CDS | 60.0% |
| !! | CCAGCAGCATTGGTTTGGCG+TGG | - | chr3.4:11449566-11449585 | None:intergenic | 60.0% |
| !! | CGCCACCAGCAGCATTGGTT+TGG | - | chr3.4:11449571-11449590 | None:intergenic | 60.0% |
| AAGTCTTGGCACCCCGCGTG+CGG | + | chr3.4:11450647-11450666 | MS.gene85538:intron | 65.0% | |
| CACTCGGGCTACCTACACCC+CGG | - | chr3.4:11450122-11450141 | None:intergenic | 65.0% | |
| CCTTTCTTCCACCGCACGCG+GGG | - | chr3.4:11450661-11450680 | None:intergenic | 65.0% | |
| CGTGGCACAGAGGCAGGGAT+GGG | - | chr3.4:11449548-11449567 | None:intergenic | 65.0% | |
| GGAGTTCCGGTACCAGCAGC+AGG | - | chr3.4:11449623-11449642 | None:intergenic | 65.0% | |
| GGCGCACCATGCGTTCTCCA+TGG | + | chr3.4:11450541-11450560 | MS.gene85538:intron | 65.0% | |
| GTGGCACAGAGGCAGGGATG+GGG | - | chr3.4:11449547-11449566 | None:intergenic | 65.0% | |
| GTTTGGCGTGGCACAGAGGC+AGG | - | chr3.4:11449554-11449573 | None:intergenic | 65.0% | |
| TCGGCTGCATGTTACCGGGG+AGG | + | chr3.4:11451019-11451038 | MS.gene85538:CDS | 65.0% | |
| ! | GGTGCGCCCCCTTTTCTCAC+TGG | - | chr3.4:11450529-11450548 | None:intergenic | 65.0% |
| ! | GTAGACCGCACCGGTAGAGC+CGG | + | chr3.4:11450270-11450289 | MS.gene85538:intron | 65.0% |
| ! | TAGACCGCACCGGTAGAGCC+GGG | + | chr3.4:11450271-11450290 | MS.gene85538:intron | 65.0% |
| AACCCCCGGCTCTACCGGTG+CGG | - | chr3.4:11450278-11450297 | None:intergenic | 70.0% | |
| CCCCGCGTGCGGTGGAAGAA+AGG | + | chr3.4:11450658-11450677 | MS.gene85538:intron | 70.0% | |
| GCGAACGCATGTCGCGTGCC+TGG | + | chr3.4:11448943-11448962 | MS.gene85538:CDS | 70.0% | |
| GCGTGGCACAGAGGCAGGGA+TGG | - | chr3.4:11449549-11449568 | None:intergenic | 70.0% | |
| ! | AGACCGCACCGGTAGAGCCG+GGG | + | chr3.4:11450272-11450291 | MS.gene85538:intron | 70.0% |
| TCTTGGCACCCCGCGTGCGG+TGG | + | chr3.4:11450650-11450669 | MS.gene85538:intron | 75.0% | |
| ! | GACCGCACCGGTAGAGCCGG+GGG | + | chr3.4:11450273-11450292 | MS.gene85538:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 11448789 | 11451231 | 11448789 | ID=MS.gene85538 |
| chr3.4 | mRNA | 11448789 | 11451231 | 11448789 | ID=MS.gene85538.t1;Parent=MS.gene85538 |
| chr3.4 | exon | 11448789 | 11449994 | 11448789 | ID=MS.gene85538.t1.exon1;Parent=MS.gene85538.t1 |
| chr3.4 | CDS | 11448789 | 11449994 | 11448789 | ID=cds.MS.gene85538.t1;Parent=MS.gene85538.t1 |
| chr3.4 | exon | 11450741 | 11451132 | 11450741 | ID=MS.gene85538.t1.exon2;Parent=MS.gene85538.t1 |
| chr3.4 | CDS | 11450741 | 11451132 | 11450741 | ID=cds.MS.gene85538.t1;Parent=MS.gene85538.t1 |
| chr3.4 | exon | 11451228 | 11451231 | 11451228 | ID=MS.gene85538.t1.exon3;Parent=MS.gene85538.t1 |
| chr3.4 | CDS | 11451228 | 11451231 | 11451228 | ID=cds.MS.gene85538.t1;Parent=MS.gene85538.t1 |
| Gene Sequence |
| Protein sequence |