AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85538


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85538.t1 MTR_3g053920 58.453 349 76 4 1 349 1 280 7.78e-127 372
MS.gene85538.t1 MTR_2g061500 83.721 129 21 0 1 129 1 129 6.82e-74 231
MS.gene85538.t1 MTR_8g463110 66.412 131 44 0 403 533 194 324 3.28e-54 194
MS.gene85538.t1 MTR_4g103530 81.053 95 18 0 55 149 1 95 2.23e-50 171
MS.gene85538.t1 MTR_4g020630 47.368 190 85 4 346 533 84 260 2.96e-46 169
MS.gene85538.t1 MTR_6g034215 56.349 126 55 0 404 529 199 324 1.71e-44 160
MS.gene85538.t1 MTR_7g011710 70.588 85 25 0 55 139 1 85 6.32e-37 134
MS.gene85538.t1 MTR_6g033215 34.503 171 110 1 31 199 124 294 5.83e-32 125
MS.gene85538.t1 MTR_0010s0370 36.313 179 102 4 7 177 3 177 2.25e-30 117
MS.gene85538.t1 MTR_0010s0350 36.313 179 102 4 7 177 3 177 2.25e-30 117
MS.gene85538.t1 MTR_3g044860 42.149 121 44 1 404 524 87 181 1.70e-26 109
MS.gene85538.t1 MTR_1g100687 41.414 99 58 0 404 502 133 231 8.55e-24 100
MS.gene85538.t1 MTR_7g063500 50.769 65 32 0 469 533 38 102 1.66e-17 79.3
MS.gene85538.t1 MTR_0042s0130 35.052 97 63 0 404 500 234 330 6.80e-15 76.6
MS.gene85538.t1 MTR_1g051330 31.667 120 81 1 403 522 349 467 2.10e-14 76.6
MS.gene85538.t1 MTR_6g009010 44.776 67 37 0 399 465 197 263 3.27e-14 73.2
MS.gene85538.t1 MTR_1g036720 33.028 109 71 1 7 113 3 111 2.41e-13 67.0
MS.gene85538.t1 MTR_7g056813 50.769 65 30 1 469 533 8 70 3.52e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85538.t1 AT2G17920 27.103 214 148 5 8 216 9 219 1.12e-18 87.4
MS.gene85538.t1 AT3G57587 30.282 142 95 2 77 216 80 219 1.02e-16 82.4
MS.gene85538.t1 AT2G41590 29.189 185 123 4 36 216 39 219 1.24e-16 82.0
MS.gene85538.t1 AT3G31430 28.230 209 142 4 11 215 107 311 5.19e-16 79.7
MS.gene85538.t1 AT2G13450 28.571 196 130 5 27 215 26 218 6.90e-16 80.1
MS.gene85538.t1 AT5G36228 27.468 233 125 5 8 227 32 233 1.57e-15 78.6
MS.gene85538.t1 AT5G25200 27.513 189 121 4 36 216 39 219 1.34e-14 75.9
MS.gene85538.t1 AT5G18636 27.513 189 121 4 36 216 39 219 1.50e-14 75.9
MS.gene85538.t1 AT3G47920 30.282 142 95 2 77 216 9 148 1.54e-14 75.1
MS.gene85538.t1 AT2G02103 28.042 189 120 4 36 216 39 219 1.75e-14 75.9
MS.gene85538.t1 AT4G02000 28.676 136 93 2 83 216 6 139 6.90e-13 70.1

Find 145 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTGTAATAAAATAAAA+AGG 0.199288 3.4:+11450961 MS.gene85538:CDS
TCCGCACATAAGGATAATTT+TGG 0.231750 3.4:-11450915 None:intergenic
CAGACTCGGTTTCAAGGTTT+AGG 0.239735 3.4:-11448845 None:intergenic
GCAACTTGAACCGGGGTTTA+AGG 0.249027 3.4:+11450845 MS.gene85538:CDS
CTGATGATGGTGTTAGAAAT+TGG 0.263857 3.4:+11449456 MS.gene85538:CDS
ATTTGCTGCTGATGGGGATA+TGG 0.268644 3.4:+11449949 MS.gene85538:CDS
TCCTATCCCTTGACCTACTT+TGG 0.306186 3.4:-11449195 None:intergenic
CGCCACCAGCAGCATTGGTT+TGG 0.311726 3.4:-11449568 None:intergenic
CGACATGCGTTCGCTGAAAT+AGG 0.325418 3.4:-11448934 None:intergenic
GATATGGGAAACAATGTAAT+AGG 0.328449 3.4:+11449965 MS.gene85538:CDS
TGCTTGCAAAGTGCAGCTTC+TGG 0.331973 3.4:+11449757 MS.gene85538:CDS
CAAGTCCATGGTCTTCCATT+TGG 0.332640 3.4:+11449161 MS.gene85538:CDS
AGACTCGGTTTCAAGGTTTA+GGG 0.335047 3.4:-11448844 None:intergenic
CCTATCCCTTGACCTACTTT+GGG 0.336493 3.4:-11449194 None:intergenic
GTGATTCAAGGACACAAAAC+TGG 0.340541 3.4:-11449123 None:intergenic
GACATTCGGCTGCATGTTAC+CGG 0.343632 3.4:+11451014 MS.gene85538:CDS
TCATAGCAGTGAGTTGGTTC+TGG 0.357299 3.4:-11449673 None:intergenic
CCCACAAATCTTAACCTTGC+TGG 0.383915 3.4:+11448795 MS.gene85538:CDS
TGGCCCAAGATGATGCTTAT+TGG 0.388674 3.4:+11451087 MS.gene85538:CDS
TGTCACAGGTGCGGCTTGCT+TGG 0.388808 3.4:+11449392 MS.gene85538:CDS
ATCCTTGAACACTGTTTGAT+AGG 0.396654 3.4:+11448879 MS.gene85538:CDS
CTCTTCCTCTACAGGTAATT+CGG 0.397802 3.4:+11449781 MS.gene85538:CDS
GACGCCAATAAGCATCATCT+TGG 0.405314 3.4:-11451091 None:intergenic
GAATGCGTGGCAACTTGAAC+CGG 0.408709 3.4:+11450836 MS.gene85538:CDS
GTTTGGCGTGGCACAGAGGC+AGG 0.410640 3.4:-11449551 None:intergenic
ACCAGCAAGGTTAAGATTTG+TGG 0.415806 3.4:-11448796 None:intergenic
TCCCTTGACCTACTTTGGGT+TGG 0.416051 3.4:-11449190 None:intergenic
CCAACTCACTGCTATGAAAC+AGG 0.420169 3.4:+11449679 MS.gene85538:CDS
TGATGATGGTGTTAGAAATT+GGG 0.422542 3.4:+11449457 MS.gene85538:CDS
CGTGGCACAGAGGCAGGGAT+GGG 0.423260 3.4:-11449545 None:intergenic
CCACATATCGTCCGCACATA+AGG 0.431935 3.4:-11450925 None:intergenic
GCGAACGCATGTCGCGTGCC+TGG 0.435880 3.4:+11448943 MS.gene85538:CDS
CCTTATGTGCGGACGATATG+TGG 0.447450 3.4:+11450925 MS.gene85538:CDS
CTTCTGGCCTCTTCCTCTAC+AGG 0.449598 3.4:+11449773 MS.gene85538:CDS
AAGCCGGTTTCACACAAGAT+TGG 0.450238 3.4:+11449491 MS.gene85538:CDS
GCGTGGCACAGAGGCAGGGA+TGG 0.450671 3.4:-11449546 None:intergenic
GTACCAATCTTGTGTGAAAC+CGG 0.451896 3.4:-11449494 None:intergenic
GACCTATCAAACAGTGTTCA+AGG 0.452361 3.4:-11448881 None:intergenic
CCAGACCGTCCTATAGTGCT+CGG 0.452576 3.4:+11449818 MS.gene85538:CDS
TCTTGTGTGAAACCGGCTTA+AGG 0.455891 3.4:-11449487 None:intergenic
GTGCCTGGAAGCCAGTCAAA+AGG 0.461780 3.4:+11448958 MS.gene85538:CDS
CCAGCAAGGTTAAGATTTGT+GGG 0.465000 3.4:-11448795 None:intergenic
GTTAAGATTTGTGGGATCCA+TGG 0.466327 3.4:-11448787 None:intergenic
GCAGGTAGCCCGAGCACTAT+AGG 0.467447 3.4:-11449827 None:intergenic
GTTCGCTGAAATAGGCAAAC+TGG 0.470508 3.4:-11448926 None:intergenic
CAAAGGAACCGTGACATCAA+TGG 0.471896 3.4:-11449291 None:intergenic
GCGTCTCGTGTCCTTGATGA+AGG 0.476940 3.4:+11449041 MS.gene85538:CDS
GTGGCACAGAGGCAGGGATG+GGG 0.482798 3.4:-11449544 None:intergenic
ATTGAAGGATGTCGGAGTTC+CGG 0.483352 3.4:-11449633 None:intergenic
GTGCGGCTTGCTTGGTCATA+CGG 0.483738 3.4:+11449400 MS.gene85538:CDS
GGAGAATCATTTGCTGCTGA+TGG 0.485476 3.4:+11449941 MS.gene85538:CDS
ACGATATGTGGGAGTGGAAG+AGG 0.490240 3.4:+11450937 MS.gene85538:CDS
TCAGTCTCAAATGGAACAGC+AGG 0.490272 3.4:-11449845 None:intergenic
GCAGGTATATCGCAGCCAAC+AGG 0.490305 3.4:-11449602 None:intergenic
ACAAAACTGGGAACCACACC+AGG 0.492013 3.4:-11449110 None:intergenic
GGAGTTCCGGTACCAGCAGC+AGG 0.496414 3.4:-11449620 None:intergenic
TTTGCTGCTGATGGGGATAT+GGG 0.496695 3.4:+11449950 MS.gene85538:CDS
TCATACGGACAAGGTGTGTC+CGG 0.497073 3.4:+11449415 MS.gene85538:CDS
TTGGGTTGGATGAAACCAAA+TGG 0.500680 3.4:-11449176 None:intergenic
TGGTCTGACTTTGTCTGAAG+AGG 0.501622 3.4:+11448815 MS.gene85538:CDS
GGCGCAAATGCTGTTCCTGT+TGG 0.504615 3.4:+11449587 MS.gene85538:CDS
GCAAGGAAATGCAAGACATT+CGG 0.509824 3.4:+11451000 MS.gene85538:CDS
CGTTTATGAACTTGAGGCCG+AGG 0.515963 3.4:-11450798 None:intergenic
GGTTTCATCCAACCCAAAGT+AGG 0.516131 3.4:+11449182 MS.gene85538:CDS
CGAATTACCTGTAGAGGAAG+AGG 0.518893 3.4:-11449780 None:intergenic
TTAAGATTTGTGGGATCCAT+GGG 0.519569 3.4:-11448786 None:intergenic
AAATAACGAAGAAGTGCATA+AGG 0.520293 3.4:+11449868 MS.gene85538:CDS
GTGTCCGGAGCTGTATGAAT+TGG 0.521204 3.4:+11449430 MS.gene85538:CDS
ATTTGCGCCACCAGCAGCAT+TGG 0.521878 3.4:-11449573 None:intergenic
GGGGTCTTGAAGCCAGCGAT+TGG 0.526020 3.4:-11449525 None:intergenic
GGCAAGCATACGATCATTGA+AGG 0.529590 3.4:-11449648 None:intergenic
TGAACTTGAGGCCGAGGTGT+AGG 0.529993 3.4:-11450792 None:intergenic
CGCCAAACCAATGCTGCTGG+TGG 0.530854 3.4:+11449566 MS.gene85538:CDS
CCTGTTTCATAGCAGTGAGT+TGG 0.533573 3.4:-11449679 None:intergenic
AGGAGCTAGTTACTAACTCA+TGG 0.534186 3.4:+11450865 MS.gene85538:CDS
CCGAGCACTATAGGACGGTC+TGG 0.537267 3.4:-11449818 None:intergenic
ACGCCAATAAGCATCATCTT+GGG 0.537347 3.4:-11451090 None:intergenic
ACGGTCTGGCAACATATTAG+AGG 0.537727 3.4:-11449804 None:intergenic
CCAGCAGCATTGGTTTGGCG+TGG 0.541626 3.4:-11449563 None:intergenic
GTACTGCTGCAACCAATCGC+TGG 0.541819 3.4:+11449513 MS.gene85538:CDS
CGCATGTTCAACCTTCAGAA+TGG 0.543074 3.4:+11449920 MS.gene85538:CDS
TATGAATTGGACTCTGATGA+TGG 0.543306 3.4:+11449443 MS.gene85538:CDS
GATATACCTGCTGCTGGTAC+CGG 0.546434 3.4:+11449614 MS.gene85538:CDS
AATGCGTGGCAACTTGAACC+GGG 0.546767 3.4:+11450837 MS.gene85538:CDS
ACATTCGGCTGCATGTTACC+GGG 0.547523 3.4:+11451015 MS.gene85538:CDS
GAGAATCATTTGCTGCTGAT+GGG 0.548792 3.4:+11449942 MS.gene85538:CDS
GTCAACGCGCTAAAACTCAT+TGG 0.549620 3.4:+11451111 MS.gene85538:CDS
TTGGGGAGCTGACCTTAAGC+CGG 0.550680 3.4:+11449475 MS.gene85538:CDS
GCATAAGAGTGCTTGCTGAA+TGG 0.552056 3.4:-11450893 None:intergenic
GGCCACTCTGAGACGCATAT+AGG 0.552354 3.4:-11449270 None:intergenic
GGTCTGACTTTGTCTGAAGA+GGG 0.553936 3.4:+11448816 MS.gene85538:CDS
CTTGTTTCAATTTCACCACA+AGG 0.555217 3.4:+11449013 MS.gene85538:CDS
CAAATGATTCTCCATTCTGA+AGG 0.557019 3.4:-11449931 None:intergenic
CCACGCCAAACCAATGCTGC+TGG 0.559698 3.4:+11449563 MS.gene85538:CDS
ATCCAACCCAAAGTAGGTCA+AGG 0.560028 3.4:+11449188 MS.gene85538:CDS
GGCGCAACACTGACAAGTAT+AGG 0.563029 3.4:-11450771 None:intergenic
TGCCTGGAAGCCAGTCAAAA+GGG 0.564305 3.4:+11448959 MS.gene85538:CDS
ATGCGTGGCAACTTGAACCG+GGG 0.565359 3.4:+11450838 MS.gene85538:CDS
GAGTCCAATTCATACAGCTC+CGG 0.566714 3.4:-11449434 None:intergenic
ATAGGATAATGATCAGAAGT+AGG 0.567632 3.4:-11450753 None:intergenic
GTAACTAGCTCCTTAAACCC+CGG 0.569868 3.4:-11450855 None:intergenic
TTTGGCGTGGCACAGAGGCA+GGG 0.573611 3.4:-11449550 None:intergenic
CAGAGTGGCCATTGATGTCA+CGG 0.574064 3.4:+11449283 MS.gene85538:CDS
CTTGCTTGGTCATACGGACA+AGG 0.574893 3.4:+11449406 MS.gene85538:CDS
GCCAAAATTATCCTTATGTG+CGG 0.578805 3.4:+11450914 MS.gene85538:CDS
AGAGGCCGAATTACCTGTAG+AGG 0.588551 3.4:-11449786 None:intergenic
CAGACCGTCCTATAGTGCTC+GGG 0.589006 3.4:+11449819 MS.gene85538:CDS
AGCAGTGAGTTGGTTCTGGA+AGG 0.590387 3.4:-11449669 None:intergenic
GCTAGTTACTAACTCATGGC+AGG 0.590601 3.4:+11450869 MS.gene85538:CDS
AAATGTCGTTTATGAACTTG+AGG 0.592489 3.4:-11450804 None:intergenic
CTTATGTGCGGACGATATGT+GGG 0.594184 3.4:+11450926 MS.gene85538:CDS
ATACGATCATTGAAGGATGT+CGG 0.599217 3.4:-11449641 None:intergenic
GGCTGCGATATACCTGCTGC+TGG 0.599666 3.4:+11449608 MS.gene85538:CDS
ACAACCACGGACCTTCATCA+AGG 0.599966 3.4:-11449052 None:intergenic
TGGCGTGTTCGTGCTAGTAA+CGG 0.608633 3.4:+11449323 MS.gene85538:CDS
GTTACGATCACAAAATCTGT+TGG 0.611426 3.4:+11448981 MS.gene85538:CDS
TTGGCTCGGATTTGAAGAAG+AGG 0.612704 3.4:+11449894 MS.gene85538:CDS
TCCAACCCAAAGTAGGTCAA+GGG 0.615642 3.4:+11449189 MS.gene85538:CDS
GAAGAAGTGCATAAGGACAT+TGG 0.620210 3.4:+11449875 MS.gene85538:CDS
TGATTCAAGGACACAAAACT+GGG 0.621020 3.4:-11449122 None:intergenic
AGTGCATAAGGACATTGGCT+CGG 0.627151 3.4:+11449880 MS.gene85538:CDS
GTGCGGACGATATGTGGGAG+TGG 0.629111 3.4:+11450931 MS.gene85538:CDS
CCCAAAGTAGGTCAAGGGAT+AGG 0.631660 3.4:+11449194 MS.gene85538:CDS
GGATCGAATCAACCCTGGTG+TGG 0.631726 3.4:+11449097 MS.gene85538:CDS
CACGAGACGCATCCACCTTG+TGG 0.636445 3.4:-11449028 None:intergenic
TGCTATTGTTGAGACTCTTG+TGG 0.642175 3.4:+11450728 MS.gene85538:intron
ATTGGTTTGGCGTGGCACAG+AGG 0.649419 3.4:-11449555 None:intergenic
TGAAACCAAATGGAAGACCA+TGG 0.650045 3.4:-11449166 None:intergenic
GATGATGGTGTTAGAAATTG+GGG 0.652352 3.4:+11449458 MS.gene85538:CDS
TCAGTGTTGCGCCTACACCT+CGG 0.653724 3.4:+11450781 MS.gene85538:CDS
AGAATCATTTGCTGCTGATG+GGG 0.663812 3.4:+11449943 MS.gene85538:CDS
GGATATCGAAGATTGTCGCA+AGG 0.665379 3.4:+11450983 MS.gene85538:CDS
CATTCGGCTGCATGTTACCG+GGG 0.669836 3.4:+11451016 MS.gene85538:CDS
ACTGGATTTCACGATCAGCA+AGG 0.672093 3.4:-11448908 None:intergenic
GCTATGGATCGAATCAACCC+TGG 0.674227 3.4:+11449092 MS.gene85538:CDS
TGAAAATTATCATACAACCA+CGG 0.679439 3.4:-11449065 None:intergenic
TGCCTATATGCGTCTCAGAG+TGG 0.682455 3.4:+11449268 MS.gene85538:CDS
GTTTCAATTTCACCACAAGG+TGG 0.685119 3.4:+11449016 MS.gene85538:CDS
CAGACAAAGTCAGACCAGCA+AGG 0.687776 3.4:-11448809 None:intergenic
TCGGCTGCATGTTACCGGGG+AGG 0.698889 3.4:+11451019 MS.gene85538:CDS
GTGTCCTTGATGAAGGTCCG+TGG 0.705004 3.4:+11449048 MS.gene85538:CDS
GTAGCCCGAGCACTATAGGA+CGG 0.709360 3.4:-11449823 None:intergenic
GGTACTCTTAAGGCATACGA+TGG 0.724968 3.4:+11449227 MS.gene85538:CDS
CAAAACTGGGAACCACACCA+GGG 0.753147 3.4:-11449109 None:intergenic
TGAGACGCATATAGGCACTG+TGG 0.782941 3.4:-11449262 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTGTAATAAAATAAAA+AGG + chr3.4:11450961-11450980 MS.gene85538:CDS 10.0%
!! TCATTGTAATAAAATAAAAA+GGG + chr3.4:11450962-11450981 MS.gene85538:CDS 10.0%
!!! AATTTTAAATATGAGAAATT+GGG + chr3.4:11449362-11449381 MS.gene85538:CDS 10.0%
!!! TAATTTTAAATATGAGAAAT+TGG + chr3.4:11449361-11449380 MS.gene85538:CDS 10.0%
!! AGTATTATTTACAAGTTCAA+CGG - chr3.4:11450364-11450383 None:intergenic 20.0%
!!! TGATAATTTTCATATTGCTA+TGG + chr3.4:11449076-11449095 MS.gene85538:CDS 20.0%
! GAACTTGTAAATAATACTCT+TGG + chr3.4:11450366-11450385 MS.gene85538:intron 25.0%
! TATACTTGGTTTAAAAGTCT+TGG + chr3.4:11450633-11450652 MS.gene85538:intron 25.0%
! TGAAAATTATCATACAACCA+CGG - chr3.4:11449068-11449087 None:intergenic 25.0%
!! AAGACTTTTAAACCAAGTAT+AGG - chr3.4:11450634-11450653 None:intergenic 25.0%
!! AGACTTTTAAACCAAGTATA+GGG - chr3.4:11450633-11450652 None:intergenic 25.0%
!!! TACAAAGTTTTTTCATGCTT+CGG + chr3.4:11451154-11451173 MS.gene85538:intron 25.0%
AAAACTCATTGGTACAAAGA+TGG + chr3.4:11451122-11451141 MS.gene85538:intron 30.0%
AAATCACCAAATATACACCA+CGG - chr3.4:11450489-11450508 None:intergenic 30.0%
AATGCAGCATATGCTAAAAA+AGG + chr3.4:11449719-11449738 MS.gene85538:CDS 30.0%
ACATCTTGCTCATCAAAAAA+AGG - chr3.4:11450040-11450059 None:intergenic 30.0%
ATAGGAACAAATGTTAGTCA+TGG + chr3.4:11449983-11450002 MS.gene85538:intron 30.0%
ATAGGATAATGATCAGAAGT+AGG - chr3.4:11450756-11450775 None:intergenic 30.0%
GATATGGGAAACAATGTAAT+AGG + chr3.4:11449965-11449984 MS.gene85538:CDS 30.0%
GCATATGCTAAAAAAGGTAA+CGG + chr3.4:11449725-11449744 MS.gene85538:CDS 30.0%
TAAATAATACTCTTGGCACT+TGG + chr3.4:11450373-11450392 MS.gene85538:intron 30.0%
TAGGAACAAATGTTAGTCAT+GGG + chr3.4:11449984-11450003 MS.gene85538:intron 30.0%
! AAATAACGAAGAAGTGCATA+AGG + chr3.4:11449868-11449887 MS.gene85538:CDS 30.0%
! AAATGTCGTTTATGAACTTG+AGG - chr3.4:11450807-11450826 None:intergenic 30.0%
! AAGTTTTCTAGGTACTCTTA+AGG + chr3.4:11449217-11449236 MS.gene85538:CDS 30.0%
! TTTAGCATATGCTGCATTTT+GGG - chr3.4:11449717-11449736 None:intergenic 30.0%
! TTTTAGCATATGCTGCATTT+TGG - chr3.4:11449718-11449737 None:intergenic 30.0%
! TTTTGATGAGCAAGATGTAA+TGG + chr3.4:11450042-11450061 MS.gene85538:intron 30.0%
!! TCGTTATTTTCAGTCTCAAA+TGG - chr3.4:11449857-11449876 None:intergenic 30.0%
!! TGATGATGGTGTTAGAAATT+GGG + chr3.4:11449457-11449476 MS.gene85538:CDS 30.0%
!!! CTTGAATCACATCGATTTTT+GGG + chr3.4:11449136-11449155 MS.gene85538:CDS 30.0%
AGAGTCTCAACAATAGCATT+TGG - chr3.4:11450726-11450745 None:intergenic 35.0%
AGCTTCGAAAAAGAATGCAA+CGG + chr3.4:11451060-11451079 MS.gene85538:CDS 35.0%
AGGAACAAATGTTAGTCATG+GGG + chr3.4:11449985-11450004 MS.gene85538:intron 35.0%
ATACGATCATTGAAGGATGT+CGG - chr3.4:11449644-11449663 None:intergenic 35.0%
ATCCTTGAACACTGTTTGAT+AGG + chr3.4:11448879-11448898 MS.gene85538:CDS 35.0%
ATTAGGATAGCCATAATAGC+CGG - chr3.4:11450406-11450425 None:intergenic 35.0%
CAAATGATTCTCCATTCTGA+AGG - chr3.4:11449934-11449953 None:intergenic 35.0%
CATCATCAAGAGAAGTTATG+CGG - chr3.4:11451202-11451221 None:intergenic 35.0%
CCAAAAATCGATGTGATTCA+AGG - chr3.4:11449138-11449157 None:intergenic 35.0%
CTTGTTTCAATTTCACCACA+AGG + chr3.4:11449013-11449032 MS.gene85538:CDS 35.0%
GAAATTGAGTGGAAAGTTGT+CGG - chr3.4:11450461-11450480 None:intergenic 35.0%
GAGTCTCACTAAGGAATAAA+AGG - chr3.4:11450188-11450207 None:intergenic 35.0%
GCCAAAATTATCCTTATGTG+CGG + chr3.4:11450914-11450933 MS.gene85538:CDS 35.0%
GTATAGGGATATCCTTCAAT+CGG - chr3.4:11450618-11450637 None:intergenic 35.0%
GTTACGATCACAAAATCTGT+TGG + chr3.4:11448981-11449000 MS.gene85538:CDS 35.0%
TATAGGGATATCCTTCAATC+GGG - chr3.4:11450617-11450636 None:intergenic 35.0%
TATGAATTGGACTCTGATGA+TGG + chr3.4:11449443-11449462 MS.gene85538:CDS 35.0%
TATTATGGCTATCCTAATGG+AGG + chr3.4:11450408-11450427 MS.gene85538:intron 35.0%
TCACTAAGGAATAAAAGGTC+CGG - chr3.4:11450183-11450202 None:intergenic 35.0%
TGATTCAAGGACACAAAACT+GGG - chr3.4:11449125-11449144 None:intergenic 35.0%
TTGAAGGATATCCCTATACT+TGG + chr3.4:11450619-11450638 MS.gene85538:intron 35.0%
! CGGTTCCTTTGAAAAAAGAA+TGG + chr3.4:11449303-11449322 MS.gene85538:CDS 35.0%
! GATAGCAGTATTTTCAGACT+CGG - chr3.4:11448862-11448881 None:intergenic 35.0%
! GATGATGGTGTTAGAAATTG+GGG + chr3.4:11449458-11449477 MS.gene85538:CDS 35.0%
! TCCGCACATAAGGATAATTT+TGG - chr3.4:11450918-11450937 None:intergenic 35.0%
! TTATGCGGTTTACCTTTTTC+CGG - chr3.4:11451187-11451206 None:intergenic 35.0%
!! ACTTCTCTTGATGATGATGT+AGG + chr3.4:11451206-11451225 MS.gene85538:intron 35.0%
!! CTGATGATGGTGTTAGAAAT+TGG + chr3.4:11449456-11449475 MS.gene85538:CDS 35.0%
!! TATTTTCAGACTCGGTTTCA+AGG - chr3.4:11448854-11448873 None:intergenic 35.0%
!! TGGTGATTTTAACGACATCT+TGG + chr3.4:11450500-11450519 MS.gene85538:intron 35.0%
!!! AATTGGGTGTTTTTTGTCAC+AGG + chr3.4:11449378-11449397 MS.gene85538:CDS 35.0%
!!! ACACGCCATTCTTTTTTCAA+AGG - chr3.4:11449311-11449330 None:intergenic 35.0%
!!! CCTTGAATCACATCGATTTT+TGG + chr3.4:11449135-11449154 MS.gene85538:CDS 35.0%
AACAAATGTTAGTCATGGGG+GGG + chr3.4:11449988-11450007 MS.gene85538:intron 40.0%
ACCAGCAAGGTTAAGATTTG+TGG - chr3.4:11448799-11448818 None:intergenic 40.0%
ACGCCAATAAGCATCATCTT+GGG - chr3.4:11451093-11451112 None:intergenic 40.0%
AGGAGCTAGTTACTAACTCA+TGG + chr3.4:11450865-11450884 MS.gene85538:CDS 40.0%
CAACTTTCCACTCAATTTCC+AGG + chr3.4:11450462-11450481 MS.gene85538:intron 40.0%
CAGACCTTAAGTACCTAGTT+CGG + chr3.4:11450148-11450167 MS.gene85538:intron 40.0%
CCAAAATAAAGCTAAACCCC+CGG - chr3.4:11450292-11450311 None:intergenic 40.0%
CCAGCAAGGTTAAGATTTGT+GGG - chr3.4:11448798-11448817 None:intergenic 40.0%
CGAAATCCGTTTATAAGCCA+TGG - chr3.4:11450561-11450580 None:intergenic 40.0%
CGTTCTCCATGGCTTATAAA+CGG + chr3.4:11450552-11450571 MS.gene85538:intron 40.0%
CTCTTCCTCTACAGGTAATT+CGG + chr3.4:11449781-11449800 MS.gene85538:CDS 40.0%
GAACAAATGTTAGTCATGGG+GGG + chr3.4:11449987-11450006 MS.gene85538:intron 40.0%
GAAGAACTTCGTTGTTTGCT+TGG + chr3.4:11450228-11450247 MS.gene85538:intron 40.0%
GACCTATCAAACAGTGTTCA+AGG - chr3.4:11448884-11448903 None:intergenic 40.0%
GCAAGGAAATGCAAGACATT+CGG + chr3.4:11451000-11451019 MS.gene85538:CDS 40.0%
GGAACAAATGTTAGTCATGG+GGG + chr3.4:11449986-11450005 MS.gene85538:intron 40.0%
GGCTATTATGGCTATCCTAA+TGG + chr3.4:11450405-11450424 MS.gene85538:intron 40.0%
GTACCAATCTTGTGTGAAAC+CGG - chr3.4:11449497-11449516 None:intergenic 40.0%
GTGATTCAAGGACACAAAAC+TGG - chr3.4:11449126-11449145 None:intergenic 40.0%
GTTTCAATTTCACCACAAGG+TGG + chr3.4:11449016-11449035 MS.gene85538:CDS 40.0%
TGAAACCAAATGGAAGACCA+TGG - chr3.4:11449169-11449188 None:intergenic 40.0%
TGCTATTGTTGAGACTCTTG+TGG + chr3.4:11450728-11450747 MS.gene85538:intron 40.0%
TTGTCGGAGAAAATTCCAAG+CGG - chr3.4:11450445-11450464 None:intergenic 40.0%
! AGAATCATTTGCTGCTGATG+GGG + chr3.4:11449943-11449962 MS.gene85538:CDS 40.0%
! AGACTCGGTTTCAAGGTTTA+GGG - chr3.4:11448847-11448866 None:intergenic 40.0%
! ATTTTCGCTATGAGAATGCG+TGG + chr3.4:11450823-11450842 MS.gene85538:CDS 40.0%
! CAAGGGATAGGAAGTTTTCT+AGG + chr3.4:11449206-11449225 MS.gene85538:CDS 40.0%
! GAAGAAGTGCATAAGGACAT+TGG + chr3.4:11449875-11449894 MS.gene85538:CDS 40.0%
! GAGAATCATTTGCTGCTGAT+GGG + chr3.4:11449942-11449961 MS.gene85538:CDS 40.0%
! GCGCACTTGCTAATGATTTA+TGG + chr3.4:11450688-11450707 MS.gene85538:intron 40.0%
! TATGCGGTTTACCTTTTTCC+GGG - chr3.4:11451186-11451205 None:intergenic 40.0%
! TTAAGGTCTGGAATTGCACT+CGG - chr3.4:11450138-11450157 None:intergenic 40.0%
!! TTGGGTTGGATGAAACCAAA+TGG - chr3.4:11449179-11449198 None:intergenic 40.0%
AAAAAGAATGCAACGGCTGC+TGG + chr3.4:11451067-11451086 MS.gene85538:CDS 45.0%
ACGGTCTGGCAACATATTAG+AGG - chr3.4:11449807-11449826 None:intergenic 45.0%
ACTGGATTTCACGATCAGCA+AGG - chr3.4:11448911-11448930 None:intergenic 45.0%
ATCCAACCCAAAGTAGGTCA+AGG + chr3.4:11449188-11449207 MS.gene85538:CDS 45.0%
ATTGAAGGATGTCGGAGTTC+CGG - chr3.4:11449636-11449655 None:intergenic 45.0%
CAAAGGAACCGTGACATCAA+TGG - chr3.4:11449294-11449313 None:intergenic 45.0%
CAAGTCCATGGTCTTCCATT+TGG + chr3.4:11449161-11449180 MS.gene85538:CDS 45.0%
CCAACTCACTGCTATGAAAC+AGG + chr3.4:11449679-11449698 MS.gene85538:CDS 45.0%
CCCACAAATCTTAACCTTGC+TGG + chr3.4:11448795-11448814 MS.gene85538:CDS 45.0%
CCTATCCCTTGACCTACTTT+GGG - chr3.4:11449197-11449216 None:intergenic 45.0%
CCTGTTTCATAGCAGTGAGT+TGG - chr3.4:11449682-11449701 None:intergenic 45.0%
CGAACTAGGTACTTAAGGTC+TGG - chr3.4:11450150-11450169 None:intergenic 45.0%
CGAATTACCTGTAGAGGAAG+AGG - chr3.4:11449783-11449802 None:intergenic 45.0%
CGCATGTTCAACCTTCAGAA+TGG + chr3.4:11449920-11449939 MS.gene85538:CDS 45.0%
CTAAACTCATTTGCCTAGGC+AGG - chr3.4:11450086-11450105 None:intergenic 45.0%
CTTATGTGCGGACGATATGT+GGG + chr3.4:11450926-11450945 MS.gene85538:CDS 45.0%
CTTGGACACCAGTGAGAAAA+GGG + chr3.4:11450518-11450537 MS.gene85538:intron 45.0%
GACGCCAATAAGCATCATCT+TGG - chr3.4:11451094-11451113 None:intergenic 45.0%
GAGTCCAATTCATACAGCTC+CGG - chr3.4:11449437-11449456 None:intergenic 45.0%
GATGAGCAAGATGTAATGGC+AGG + chr3.4:11450046-11450065 MS.gene85538:intron 45.0%
GCCACTAAACTCATTTGCCT+AGG - chr3.4:11450090-11450109 None:intergenic 45.0%
GCCTAGGCAAATGAGTTTAG+TGG + chr3.4:11450086-11450105 MS.gene85538:intron 45.0%
GCTAGTTACTAACTCATGGC+AGG + chr3.4:11450869-11450888 MS.gene85538:CDS 45.0%
GGATATCGAAGATTGTCGCA+AGG + chr3.4:11450983-11451002 MS.gene85538:CDS 45.0%
GGCAAATGAGTTTAGTGGCA+TGG + chr3.4:11450091-11450110 MS.gene85538:intron 45.0%
GGCAAGCATACGATCATTGA+AGG - chr3.4:11449651-11449670 None:intergenic 45.0%
GGTACTCTTAAGGCATACGA+TGG + chr3.4:11449227-11449246 MS.gene85538:CDS 45.0%
GGTCTGACTTTGTCTGAAGA+GGG + chr3.4:11448816-11448835 MS.gene85538:CDS 45.0%
GGTTTCATCCAACCCAAAGT+AGG + chr3.4:11449182-11449201 MS.gene85538:CDS 45.0%
GTAACTAGCTCCTTAAACCC+CGG - chr3.4:11450858-11450877 None:intergenic 45.0%
GTCAACGCGCTAAAACTCAT+TGG + chr3.4:11451111-11451130 MS.gene85538:CDS 45.0%
GTTCGCTGAAATAGGCAAAC+TGG - chr3.4:11448929-11448948 None:intergenic 45.0%
GTTTAGTGGCATGGAATTGC+CGG + chr3.4:11450100-11450119 MS.gene85538:intron 45.0%
TATAAGCCATGGAGAACGCA+TGG - chr3.4:11450550-11450569 None:intergenic 45.0%
TCAGTCTCAAATGGAACAGC+AGG - chr3.4:11449848-11449867 None:intergenic 45.0%
TCCAACCCAAAGTAGGTCAA+GGG + chr3.4:11449189-11449208 MS.gene85538:CDS 45.0%
TCCTATCCCTTGACCTACTT+TGG - chr3.4:11449198-11449217 None:intergenic 45.0%
TCTTGGACACCAGTGAGAAA+AGG + chr3.4:11450517-11450536 MS.gene85538:intron 45.0%
TGGCCCAAGATGATGCTTAT+TGG + chr3.4:11451087-11451106 MS.gene85538:CDS 45.0%
TGGTCTGACTTTGTCTGAAG+AGG + chr3.4:11448815-11448834 MS.gene85538:CDS 45.0%
TGTGAGCTAGAGTCTCACTA+AGG - chr3.4:11450197-11450216 None:intergenic 45.0%
TTATCTGACGTCCCGATTGA+AGG + chr3.4:11450603-11450622 MS.gene85538:intron 45.0%
TTGGACACCAGTGAGAAAAG+GGG + chr3.4:11450519-11450538 MS.gene85538:intron 45.0%
TTTAGTGGCATGGAATTGCC+GGG + chr3.4:11450101-11450120 MS.gene85538:intron 45.0%
TTTGCTGCTGATGGGGATAT+GGG + chr3.4:11449950-11449969 MS.gene85538:CDS 45.0%
! AAGCCGGTTTCACACAAGAT+TGG + chr3.4:11449491-11449510 MS.gene85538:CDS 45.0%
! AGTGCATAAGGACATTGGCT+CGG + chr3.4:11449880-11449899 MS.gene85538:CDS 45.0%
! AGTGCCGAACTAGGTACTTA+AGG - chr3.4:11450155-11450174 None:intergenic 45.0%
! ATTTGCTGCTGATGGGGATA+TGG + chr3.4:11449949-11449968 MS.gene85538:CDS 45.0%
! CAGACTCGGTTTCAAGGTTT+AGG - chr3.4:11448848-11448867 None:intergenic 45.0%
! GGAGAATCATTTGCTGCTGA+TGG + chr3.4:11449941-11449960 MS.gene85538:CDS 45.0%
! GTGATCGTAACCCTTTTGAC+TGG - chr3.4:11448972-11448991 None:intergenic 45.0%
! TAAGGTCTGGAATTGCACTC+GGG - chr3.4:11450137-11450156 None:intergenic 45.0%
! TCTTGTGTGAAACCGGCTTA+AGG - chr3.4:11449490-11449509 None:intergenic 45.0%
! TGTTTTCATGTAGACCGCAC+CGG + chr3.4:11450261-11450280 MS.gene85538:intron 45.0%
!! GCATAAGAGTGCTTGCTGAA+TGG - chr3.4:11450896-11450915 None:intergenic 45.0%
!! TCATAGCAGTGAGTTGGTTC+TGG - chr3.4:11449676-11449695 None:intergenic 45.0%
!! TTGGCTCGGATTTGAAGAAG+AGG + chr3.4:11449894-11449913 MS.gene85538:CDS 45.0%
!!! CCGGGGGTTTAGCTTTATTT+TGG + chr3.4:11450289-11450308 MS.gene85538:intron 45.0%
!!! GATTTTTGGGTGCAAGTCCA+TGG + chr3.4:11449149-11449168 MS.gene85538:CDS 45.0%
!!! GGTGTTTTTTGTCACAGGTG+CGG + chr3.4:11449383-11449402 MS.gene85538:CDS 45.0%
AATGCGTGGCAACTTGAACC+GGG + chr3.4:11450837-11450856 MS.gene85538:CDS 50.0%
AATGGCAGGTCCTGATGATC+AGG + chr3.4:11450060-11450079 MS.gene85538:intron 50.0%
ACAAAACTGGGAACCACACC+AGG - chr3.4:11449113-11449132 None:intergenic 50.0%
ACAACCACGGACCTTCATCA+AGG - chr3.4:11449055-11449074 None:intergenic 50.0%
ACATTCGGCTGCATGTTACC+GGG + chr3.4:11451015-11451034 MS.gene85538:CDS 50.0%
ACGATATGTGGGAGTGGAAG+AGG + chr3.4:11450937-11450956 MS.gene85538:CDS 50.0%
AGAGGCCGAATTACCTGTAG+AGG - chr3.4:11449789-11449808 None:intergenic 50.0%
CAAAACTGGGAACCACACCA+GGG - chr3.4:11449112-11449131 None:intergenic 50.0%
CAGACAAAGTCAGACCAGCA+AGG - chr3.4:11448812-11448831 None:intergenic 50.0%
CAGAGTGGCCATTGATGTCA+CGG + chr3.4:11449283-11449302 MS.gene85538:CDS 50.0%
CCAAATATACACCACGGACC+TGG - chr3.4:11450483-11450502 None:intergenic 50.0%
CCACATATCGTCCGCACATA+AGG - chr3.4:11450928-11450947 None:intergenic 50.0%
CCAGGTCCGTGGTGTATATT+TGG + chr3.4:11450480-11450499 MS.gene85538:intron 50.0%
CCCAAAGTAGGTCAAGGGAT+AGG + chr3.4:11449194-11449213 MS.gene85538:CDS 50.0%
CCTAGTTCGGCACTTCAATC+CGG + chr3.4:11450161-11450180 MS.gene85538:intron 50.0%
CCTTATGTGCGGACGATATG+TGG + chr3.4:11450925-11450944 MS.gene85538:CDS 50.0%
CGACATGCGTTCGCTGAAAT+AGG - chr3.4:11448937-11448956 None:intergenic 50.0%
CGTCGAGCTGTTCTTGATTC+AGG + chr3.4:11450579-11450598 MS.gene85538:intron 50.0%
CGTTTATGAACTTGAGGCCG+AGG - chr3.4:11450801-11450820 None:intergenic 50.0%
CTTGCTTGGTCATACGGACA+AGG + chr3.4:11449406-11449425 MS.gene85538:CDS 50.0%
GAATGCGTGGCAACTTGAAC+CGG + chr3.4:11450836-11450855 MS.gene85538:CDS 50.0%
GACATTCGGCTGCATGTTAC+CGG + chr3.4:11451014-11451033 MS.gene85538:CDS 50.0%
GATATACCTGCTGCTGGTAC+CGG + chr3.4:11449614-11449633 MS.gene85538:CDS 50.0%
GCAACTTGAACCGGGGTTTA+AGG + chr3.4:11450845-11450864 MS.gene85538:CDS 50.0%
GCTATGGATCGAATCAACCC+TGG + chr3.4:11449092-11449111 MS.gene85538:CDS 50.0%
GCTGTTCTACGACCTCCATT+AGG - chr3.4:11450423-11450442 None:intergenic 50.0%
GGCGCAACACTGACAAGTAT+AGG - chr3.4:11450774-11450793 None:intergenic 50.0%
GTGTCCGGAGCTGTATGAAT+TGG + chr3.4:11449430-11449449 MS.gene85538:CDS 50.0%
TCATACGGACAAGGTGTGTC+CGG + chr3.4:11449415-11449434 MS.gene85538:CDS 50.0%
TCCCTTGACCTACTTTGGGT+TGG - chr3.4:11449193-11449212 None:intergenic 50.0%
TGCCTATATGCGTCTCAGAG+TGG + chr3.4:11449268-11449287 MS.gene85538:CDS 50.0%
TGCCTGGAAGCCAGTCAAAA+GGG + chr3.4:11448959-11448978 MS.gene85538:CDS 50.0%
TGCTTGCAAAGTGCAGCTTC+TGG + chr3.4:11449757-11449776 MS.gene85538:CDS 50.0%
TGGACACCAGTGAGAAAAGG+GGG + chr3.4:11450520-11450539 MS.gene85538:intron 50.0%
TGGCGTGTTCGTGCTAGTAA+CGG + chr3.4:11449323-11449342 MS.gene85538:CDS 50.0%
TTAGTGGCATGGAATTGCCG+GGG + chr3.4:11450102-11450121 MS.gene85538:intron 50.0%
! TGAGACGCATATAGGCACTG+TGG - chr3.4:11449265-11449284 None:intergenic 50.0%
! TGGCGTCTTACCGGCTATTA+TGG + chr3.4:11450393-11450412 MS.gene85538:intron 50.0%
!! AGCAGTGAGTTGGTTCTGGA+AGG - chr3.4:11449672-11449691 None:intergenic 50.0%
!! CATGCGATTTTGATCCTCCC+CGG - chr3.4:11451036-11451055 None:intergenic 50.0%
!!! AACCCTTTTGACTGGCTTCC+AGG - chr3.4:11448964-11448983 None:intergenic 50.0%
AACCTTTCTTCCACCGCACG+CGG - chr3.4:11450663-11450682 None:intergenic 55.0%
ATGCGTGGCAACTTGAACCG+GGG + chr3.4:11450838-11450857 MS.gene85538:CDS 55.0%
ATTTGCGCCACCAGCAGCAT+TGG - chr3.4:11449576-11449595 None:intergenic 55.0%
CAGACCGTCCTATAGTGCTC+GGG + chr3.4:11449819-11449838 MS.gene85538:CDS 55.0%
CATTCGGCTGCATGTTACCG+GGG + chr3.4:11451016-11451035 MS.gene85538:CDS 55.0%
CCACGGACCTGGAAATTGAG+TGG - chr3.4:11450472-11450491 None:intergenic 55.0%
CCACTCAATTTCCAGGTCCG+TGG + chr3.4:11450469-11450488 MS.gene85538:intron 55.0%
CCAGACCGTCCTATAGTGCT+CGG + chr3.4:11449818-11449837 MS.gene85538:CDS 55.0%
CTTCTGGCCTCTTCCTCTAC+AGG + chr3.4:11449773-11449792 MS.gene85538:CDS 55.0%
CTTGGCACTTGGCGTCTTAC+CGG + chr3.4:11450384-11450403 MS.gene85538:intron 55.0%
GCAGGTATATCGCAGCCAAC+AGG - chr3.4:11449605-11449624 None:intergenic 55.0%
GCGTCTCGTGTCCTTGATGA+AGG + chr3.4:11449041-11449060 MS.gene85538:CDS 55.0%
GGATCGAATCAACCCTGGTG+TGG + chr3.4:11449097-11449116 MS.gene85538:CDS 55.0%
GGCGCAAATGCTGTTCCTGT+TGG + chr3.4:11449587-11449606 MS.gene85538:CDS 55.0%
GTACTGCTGCAACCAATCGC+TGG + chr3.4:11449513-11449532 MS.gene85538:CDS 55.0%
GTAGCCCGAGCACTATAGGA+CGG - chr3.4:11449826-11449845 None:intergenic 55.0%
GTGCCTGGAAGCCAGTCAAA+AGG + chr3.4:11448958-11448977 MS.gene85538:CDS 55.0%
GTGTCCTTGATGAAGGTCCG+TGG + chr3.4:11449048-11449067 MS.gene85538:CDS 55.0%
TCAGTGTTGCGCCTACACCT+CGG + chr3.4:11450781-11450800 MS.gene85538:CDS 55.0%
TGAACTTGAGGCCGAGGTGT+AGG - chr3.4:11450795-11450814 None:intergenic 55.0%
TTCATGCTTCGGCAACAGCC+CGG + chr3.4:11451165-11451184 MS.gene85538:intron 55.0%
TTCGGCAACAGCCCGGAAAA+AGG + chr3.4:11451172-11451191 MS.gene85538:intron 55.0%
TTGGGGAGCTGACCTTAAGC+CGG + chr3.4:11449475-11449494 MS.gene85538:CDS 55.0%
! GTGCGGCTTGCTTGGTCATA+CGG + chr3.4:11449400-11449419 MS.gene85538:CDS 55.0%
!! ATTGGTTTGGCGTGGCACAG+AGG - chr3.4:11449558-11449577 None:intergenic 55.0%
!! CCGGATTGAAGTGCCGAACT+AGG - chr3.4:11450164-11450183 None:intergenic 55.0%
!! GGCCACTCTGAGACGCATAT+AGG - chr3.4:11449273-11449292 None:intergenic 55.0%
ACCTTTCTTCCACCGCACGC+GGG - chr3.4:11450662-11450681 None:intergenic 60.0%
AGCTAAACCCCCGGCTCTAC+CGG - chr3.4:11450283-11450302 None:intergenic 60.0%
CACGAGACGCATCCACCTTG+TGG - chr3.4:11449031-11449050 None:intergenic 60.0%
CCACGCCAAACCAATGCTGC+TGG + chr3.4:11449563-11449582 MS.gene85538:CDS 60.0%
CCGAGCACTATAGGACGGTC+TGG - chr3.4:11449821-11449840 None:intergenic 60.0%
CCTAGGCAGGCCTGATCATC+AGG - chr3.4:11450073-11450092 None:intergenic 60.0%
CCTGATGATCAGGCCTGCCT+AGG + chr3.4:11450070-11450089 MS.gene85538:intron 60.0%
CGCCAAACCAATGCTGCTGG+TGG + chr3.4:11449566-11449585 MS.gene85538:CDS 60.0%
GAGGTCGTAGAACAGCCGCT+TGG + chr3.4:11450427-11450446 MS.gene85538:intron 60.0%
GCAGGTAGCCCGAGCACTAT+AGG - chr3.4:11449830-11449849 None:intergenic 60.0%
GCATGGAATTGCCGGGGTGT+AGG + chr3.4:11450108-11450127 MS.gene85538:intron 60.0%
GGCTGCGATATACCTGCTGC+TGG + chr3.4:11449608-11449627 MS.gene85538:CDS 60.0%
GGGGTCTTGAAGCCAGCGAT+TGG - chr3.4:11449528-11449547 None:intergenic 60.0%
GTGCGGACGATATGTGGGAG+TGG + chr3.4:11450931-11450950 MS.gene85538:CDS 60.0%
TTTGGCGTGGCACAGAGGCA+GGG - chr3.4:11449553-11449572 None:intergenic 60.0%
! TGTCACAGGTGCGGCTTGCT+TGG + chr3.4:11449392-11449411 MS.gene85538:CDS 60.0%
!! CCAGCAGCATTGGTTTGGCG+TGG - chr3.4:11449566-11449585 None:intergenic 60.0%
!! CGCCACCAGCAGCATTGGTT+TGG - chr3.4:11449571-11449590 None:intergenic 60.0%
AAGTCTTGGCACCCCGCGTG+CGG + chr3.4:11450647-11450666 MS.gene85538:intron 65.0%
CACTCGGGCTACCTACACCC+CGG - chr3.4:11450122-11450141 None:intergenic 65.0%
CCTTTCTTCCACCGCACGCG+GGG - chr3.4:11450661-11450680 None:intergenic 65.0%
CGTGGCACAGAGGCAGGGAT+GGG - chr3.4:11449548-11449567 None:intergenic 65.0%
GGAGTTCCGGTACCAGCAGC+AGG - chr3.4:11449623-11449642 None:intergenic 65.0%
GGCGCACCATGCGTTCTCCA+TGG + chr3.4:11450541-11450560 MS.gene85538:intron 65.0%
GTGGCACAGAGGCAGGGATG+GGG - chr3.4:11449547-11449566 None:intergenic 65.0%
GTTTGGCGTGGCACAGAGGC+AGG - chr3.4:11449554-11449573 None:intergenic 65.0%
TCGGCTGCATGTTACCGGGG+AGG + chr3.4:11451019-11451038 MS.gene85538:CDS 65.0%
! GGTGCGCCCCCTTTTCTCAC+TGG - chr3.4:11450529-11450548 None:intergenic 65.0%
! GTAGACCGCACCGGTAGAGC+CGG + chr3.4:11450270-11450289 MS.gene85538:intron 65.0%
! TAGACCGCACCGGTAGAGCC+GGG + chr3.4:11450271-11450290 MS.gene85538:intron 65.0%
AACCCCCGGCTCTACCGGTG+CGG - chr3.4:11450278-11450297 None:intergenic 70.0%
CCCCGCGTGCGGTGGAAGAA+AGG + chr3.4:11450658-11450677 MS.gene85538:intron 70.0%
GCGAACGCATGTCGCGTGCC+TGG + chr3.4:11448943-11448962 MS.gene85538:CDS 70.0%
GCGTGGCACAGAGGCAGGGA+TGG - chr3.4:11449549-11449568 None:intergenic 70.0%
! AGACCGCACCGGTAGAGCCG+GGG + chr3.4:11450272-11450291 MS.gene85538:intron 70.0%
TCTTGGCACCCCGCGTGCGG+TGG + chr3.4:11450650-11450669 MS.gene85538:intron 75.0%
! GACCGCACCGGTAGAGCCGG+GGG + chr3.4:11450273-11450292 MS.gene85538:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 11448789 11451231 11448789 ID=MS.gene85538
chr3.4 mRNA 11448789 11451231 11448789 ID=MS.gene85538.t1;Parent=MS.gene85538
chr3.4 exon 11448789 11449994 11448789 ID=MS.gene85538.t1.exon1;Parent=MS.gene85538.t1
chr3.4 CDS 11448789 11449994 11448789 ID=cds.MS.gene85538.t1;Parent=MS.gene85538.t1
chr3.4 exon 11450741 11451132 11450741 ID=MS.gene85538.t1.exon2;Parent=MS.gene85538.t1
chr3.4 CDS 11450741 11451132 11450741 ID=cds.MS.gene85538.t1;Parent=MS.gene85538.t1
chr3.4 exon 11451228 11451231 11451228 ID=MS.gene85538.t1.exon3;Parent=MS.gene85538.t1
chr3.4 CDS 11451228 11451231 11451228 ID=cds.MS.gene85538.t1;Parent=MS.gene85538.t1
Gene Sequence

>MS.gene85538

ATGGATCCCACAAATCTTAACCTTGCTGGTCTGACTTTGTCTGAAGAGGGTCTAACCCTAAACCTTGAAACCGAGTCTGAAAATACTGCTATCCTTGAACACTGTTTGATAGGTCGAGTCCTTGCTGATCGTGAAATCCAGTTTGCCTATTTCAGCGAACGCATGTCGCGTGCCTGGAAGCCAGTCAAAAGGGTTACGATCACAAAATCTGTTGGTGATCGCTTCTTGTTTCAATTTCACCACAAGGTGGATGCGTCTCGTGTCCTTGATGAAGGTCCGTGGTTGTATGATAATTTTCATATTGCTATGGATCGAATCAACCCTGGTGTGGTTCCCAGTTTTGTGTCCTTGAATCACATCGATTTTTGGGTGCAAGTCCATGGTCTTCCATTTGGTTTCATCCAACCCAAAGTAGGTCAAGGGATAGGAAGTTTTCTAGGTACTCTTAAGGCATACGATGGTCGTAACACAATCCACAGTGCCTATATGCGTCTCAGAGTGGCCATTGATGTCACGGTTCCTTTGAAAAAAGAATGGCGTGTTCGTGCTAGTAACGGTGCTTTTGTGACAGTTAATTTTAAATATGAGAAATTGGGTGTTTTTTGTCACAGGTGCGGCTTGCTTGGTCATACGGACAAGGTGTGTCCGGAGCTGTATGAATTGGACTCTGATGATGGTGTTAGAAATTGGGGAGCTGACCTTAAGCCGGTTTCACACAAGATTGGTACTGCTGCAACCAATCGCTGGCTTCAAGACCCCATCCCTGCCTCTGTGCCACGCCAAACCAATGCTGCTGGTGGCGCAAATGCTGTTCCTGTTGGCTGCGATATACCTGCTGCTGGTACCGGAACTCCGACATCCTTCAATGATCGTATGCTTGCCTTCCAGAACCAACTCACTGCTATGAAACAGGATGTTATCGCTGCCCAAAATGCAGCATATGCTAAAAAAGGTAACGGTTCTAATTCTGCTTGCAAAGTGCAGCTTCTGGCCTCTTCCTCTACAGGTAATTCGGCCTCTAATATGTTGCCAGACCGTCCTATAGTGCTCGGGCTACCTGCTGTTCCATTTGAGACTGAAAATAACGAAGAAGTGCATAAGGACATTGGCTCGGATTTGAAGAAGAGGAAGCGCATGTTCAACCTTCAGAATGGAGAATCATTTGCTGCTGATGGGGATATGGGAAACAATGTAATAGGAACAAATGTTAGTCATGGGGGGGATGCTGAAATGAATGTATTTTCTAATCCTTTTTTTGATGAGCAAGATGTAATGGCAGGTCCTGATGATCAGGCCTGCCTAGGCAAATGAGTTTAGTGGCATGGAATTGCCGGGGTGTAGGTAGCCCGAGTGCAATTCCAGACCTTAAGTACCTAGTTCGGCACTTCAATCCGGACCTTTTATTCCTTAGTGAGACTCTAGCTCACAGAAATAAAATTGAAGAACTTCGTTGTTTGCTTGGTTACGATTCTTGTTTTCATGTAGACCGCACCGGTAGAGCCGGGGGTTTAGCTTTATTTTGGAAAAATTCATTGAATTGTCAACTTATTAATTTTTCAAGTAATCATATTACCGTTGAACTTGTAAATAATACTCTTGGCACTTGGCGTCTTACCGGCTATTATGGCTATCCTAATGGAGGTCGTAGAACAGCCGCTTGGAATTTTCTCCGACAACTTTCCACTCAATTTCCAGGTCCGTGGTGTATATTTGGTGATTTTAACGACATCTTGGACACCAGTGAGAAAAGGGGGCGCACCATGCGTTCTCCATGGCTTATAAACGGATTTCGTCGAGCTGTTCTTGATTCAGGTTTATCTGACGTCCCGATTGAAGGATATCCCTATACTTGGTTTAAAAGTCTTGGCACCCCGCGTGCGGTGGAAGAAAGGTTAGATCGCGCACTTGCTAATGATTTATGGTTTAATATGTTTCCAAATGCTATTGTTGAGACTCTTGTGGCACCTACTTCTGATCATTATCCTATACTTGTCAGTGTTGCGCCTACACCTCGGCCTCAAGTTCATAAACGACATTTTCGCTATGAGAATGCGTGGCAACTTGAACCGGGGTTTAAGGAGCTAGTTACTAACTCATGGCAGGACCATTCAGCAAGCACTCTTATGCCAAAATTATCCTTATGTGCGGACGATATGTGGGAGTGGAAGAGGCATCATTGTAATAAAATAAAAAGGGATATCGAAGATTGTCGCAAGGAAATGCAAGACATTCGGCTGCATGTTACCGGGGAGGATCAAAATCGCATGCTTGAGCTTCGAAAAAGAATGCAACGGCTGCTGGCCCAAGATGATGCTTATTGGCGTCAACGCGCTAAAACTCATTGGTACAAAGATGGAGACAGAAATACAAAGTTTTTTCATGCTTCGGCAACAGCCCGGAAAAAGGTAAACCGCATAACTTCTCTTGATGATGATGTAGGTAA

Protein sequence

>MS.gene85538.t1

MDPTNLNLAGLTLSEEGLTLNLETESENTAILEHCLIGRVLADREIQFAYFSERMSRAWKPVKRVTITKSVGDRFLFQFHHKVDASRVLDEGPWLYDNFHIAMDRINPGVVPSFVSLNHIDFWVQVHGLPFGFIQPKVGQGIGSFLGTLKAYDGRNTIHSAYMRLRVAIDVTVPLKKEWRVRASNGAFVTVNFKYEKLGVFCHRCGLLGHTDKVCPELYELDSDDGVRNWGADLKPVSHKIGTAATNRWLQDPIPASVPRQTNAAGGANAVPVGCDIPAAGTGTPTSFNDRMLAFQNQLTAMKQDVIAAQNAAYAKKGNGSNSACKVQLLASSSTGNSASNMLPDRPIVLGLPAVPFETENNEEVHKDIGSDLKKRKRMFNLQNGESFAADGDMGNNVIGTNTLVAPTSDHYPILVSVAPTPRPQVHKRHFRYENAWQLEPGFKELVTNSWQDHSASTLMPKLSLCADDMWEWKRHHCNKIKRDIEDCRKEMQDIRLHVTGEDQNRMLELRKRMQRLLAQDDAYWRQRAKTHW