AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016632

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016632.t1 MTR_3g053920 54.452 292 79 3 1 292 1 238 3.26e-103 306
MS.gene016632.t1 MTR_2g061500 72.868 129 35 0 1 129 1 129 3.93e-66 206
MS.gene016632.t1 MTR_4g103530 79.775 89 18 0 55 143 1 89 3.20e-46 156
MS.gene016632.t1 MTR_7g011710 77.647 85 19 0 55 139 1 85 3.33e-42 145
MS.gene016632.t1 MTR_6g033215 34.518 197 112 4 5 189 103 294 5.67e-32 122
MS.gene016632.t1 MTR_0010s0370 34.091 176 98 6 8 167 4 177 5.02e-24 98.2
MS.gene016632.t1 MTR_0010s0350 34.091 176 98 6 8 167 4 177 5.02e-24 98.2
MS.gene016632.t1 MTR_1g036720 36.538 104 64 1 11 112 7 110 1.42e-15 72.4
MS.gene016632.t1 MTR_8g463110 42.520 127 29 4 277 368 1 118 2.93e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 113 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCTGTTGATGGGGTTT+TGG 0.120974 8.2:+61602881 MS.gene016632:CDS
CTCCAGGTTGGAACCCATTT+TGG 0.154972 8.2:-61602487 None:intergenic
CAGGTTCATGGCTTGTCTTT+TGG 0.207189 8.2:+61602116 MS.gene016632:CDS
CCGACGACGGTGTGCGCAAC+TGG 0.220884 8.2:+61602375 MS.gene016632:CDS
CGGTGTCAGCAGCTATATTA+AGG 0.238418 8.2:-61601800 None:intergenic
ACTTCTTCCTTTGCTGTTGA+TGG 0.244696 8.2:+61602873 MS.gene016632:CDS
CTGCTTGATCGGTCGTGTTT+TGG 0.244898 8.2:+61601845 MS.gene016632:CDS
GATGCCTTACCGAGCCAAAA+TGG 0.267191 8.2:+61602473 MS.gene016632:CDS
CGTTGAATCATCTAGATATA+TGG 0.271880 8.2:+61602090 MS.gene016632:CDS
TGTTAGTGCACCATTGAAAA+AGG 0.305099 8.2:+61602223 MS.gene016632:CDS
CTTCTTCCTTTGCTGTTGAT+GGG 0.311075 8.2:+61602874 MS.gene016632:CDS
AACACTGCTGCTGTTCCTGC+TGG 0.313186 8.2:+61602524 MS.gene016632:CDS
ATGATGGTCACACGCTTTCC+TGG 0.341147 8.2:-61601924 None:intergenic
CCAATTCCTTGACCGACCTT+TGG 0.344772 8.2:-61602149 None:intergenic
GCTATTAAACAGGATGTTCT+TGG 0.346023 8.2:+61602599 MS.gene016632:CDS
TTAACACCAGCATCATTAAA+AGG 0.352995 8.2:-61602762 None:intergenic
CCAAAGGTCGGTCAAGGAAT+TGG 0.353706 8.2:+61602149 MS.gene016632:CDS
GCTTTCCTGGTTTCCATGCT+CGG 0.356413 8.2:-61601911 None:intergenic
CAACTTGTCCGATGAGGGTT+TGG 0.369006 8.2:+61601776 MS.gene016632:CDS
ACTCGATGCTGCTCGTATCT+TGG 0.369657 8.2:+61601989 MS.gene016632:CDS
CTCGGTAAGGCATCAGGTAT+AGG 0.374823 8.2:-61602464 None:intergenic
CGACGACGGTGTGCGCAACT+GGG 0.374988 8.2:+61602376 MS.gene016632:CDS
TGTTACATGTGTGGCATTCT+CGG 0.378501 8.2:+61602317 MS.gene016632:CDS
GATATATGGGTGCAGGTTCA+TGG 0.385890 8.2:+61602104 MS.gene016632:CDS
GCCATCAATGTTGAGGTTCA+TGG 0.389765 8.2:-61601751 None:intergenic
TGCTATTCTCGCTATTAAAC+AGG 0.398906 8.2:+61602589 MS.gene016632:CDS
CAGTCCGGATTTGTTCGAAT+TGG 0.399884 8.2:+61602349 MS.gene016632:CDS
TACTCTCAAGGTGGCGGTAA+TGG 0.403819 8.2:+61602786 MS.gene016632:CDS
AAGCCCGTTTCTACACGTAT+AGG 0.406524 8.2:+61602410 MS.gene016632:CDS
TTCCAACCTGGAGTTTCTGC+TGG 0.409485 8.2:+61602497 MS.gene016632:CDS
CAATGCGGTCCATAACTATA+TGG 0.415082 8.2:-61602040 None:intergenic
CCCATGAACCTCAACATTGA+TGG 0.432147 8.2:+61601750 MS.gene016632:CDS
AAGAGCTGTGAATGGTATTA+CGG 0.442497 8.2:-61602175 None:intergenic
GGTTCTGATGTTAGTGCTAT+GGG 0.449009 8.2:+61602918 MS.gene016632:CDS
CTTTCCTGGTTTCCATGCTC+GGG 0.453939 8.2:-61601910 None:intergenic
CGTGTGATTGCCCTTCATAA+TGG 0.454147 8.2:+61602849 MS.gene016632:CDS
CATCGAGTTTGTGATGGAAC+TGG 0.455025 8.2:-61601974 None:intergenic
GTAGAAACGGGCTTGAGATC+AGG 0.456471 8.2:-61602401 None:intergenic
AGCCCGTTTCTACACGTATA+GGG 0.459025 8.2:+61602411 MS.gene016632:CDS
GTTGAATCATCTAGATATAT+GGG 0.464111 8.2:+61602091 MS.gene016632:CDS
AGCGGCTTTGATTTCTCGAT+TGG 0.464919 8.2:-61601868 None:intergenic
AGGTTCTGATGTTAGTGCTA+TGG 0.465437 8.2:+61602917 MS.gene016632:CDS
TGCTGCTCGTATCTTGGATG+AGG 0.474346 8.2:+61601995 MS.gene016632:CDS
ATGCCTTACCGAGCCAAAAT+GGG 0.478199 8.2:+61602474 MS.gene016632:CDS
TTCTTCCTTTGCTGTTGATG+GGG 0.481385 8.2:+61602875 MS.gene016632:CDS
AGGAAGAAGTTCCATTATGA+AGG 0.484386 8.2:-61602860 None:intergenic
TGACAACTTCCATATAGTTA+TGG 0.484520 8.2:+61602031 MS.gene016632:CDS
AGTAACATAAGAACCATTGT+TGG 0.488545 8.2:-61602261 None:intergenic
TTGTTTAAATATGAGAAACT+AGG 0.489875 8.2:+61602287 MS.gene016632:CDS
ATCATTGAACACTGCTTGAT+CGG 0.496188 8.2:+61601834 MS.gene016632:CDS
ATCAAGCAGTGTTCAATGAT+GGG 0.501051 8.2:-61601831 None:intergenic
AGCCAAAATGGGTTCCAACC+TGG 0.501091 8.2:+61602485 MS.gene016632:CDS
TTCGAATTGGACTCCGACGA+CGG 0.503034 8.2:+61602362 MS.gene016632:CDS
TACTAATGATGATGCTGGTT+CGG 0.503266 8.2:+61602809 MS.gene016632:CDS
CCATCAATGTTGAGGTTCAT+GGG 0.505221 8.2:-61601750 None:intergenic
GATCAAGCAGTGTTCAATGA+TGG 0.505243 8.2:-61601832 None:intergenic
CAGGGTCGTTCACTACTGCT+TGG 0.505843 8.2:+61602726 MS.gene016632:intron
GAGTCCAATTCGAACAAATC+CGG 0.508451 8.2:-61602353 None:intergenic
GGTGTCAGCAGCTATATTAA+GGG 0.511358 8.2:-61601799 None:intergenic
TGATTCAACGGAACAGTGAT+CGG 0.512914 8.2:-61602077 None:intergenic
GTTATGGACCGCATTGCTCC+TGG 0.513189 8.2:+61602047 MS.gene016632:CDS
TCGGTAAGGCATCAGGTATA+GGG 0.516795 8.2:-61602463 None:intergenic
TGCTAACAACAAGTGGCTGC+AGG 0.517700 8.2:+61602439 MS.gene016632:CDS
GGCCTCAACTTGTCCGATGA+GGG 0.519387 8.2:+61601771 MS.gene016632:CDS
GACCCTATACGTGTAGAAAC+GGG 0.520328 8.2:-61602413 None:intergenic
GTTGAGGTTCATGGGATCCA+TGG 0.522664 8.2:-61601742 None:intergenic
CGACCCTATACGTGTAGAAA+CGG 0.526553 8.2:-61602414 None:intergenic
GACGACGGTGTGCGCAACTG+GGG 0.526863 8.2:+61602377 MS.gene016632:CDS
GATTCAACGGAACAGTGATC+GGG 0.528685 8.2:-61602076 None:intergenic
TCTCGGTCATTCAGACAGTC+CGG 0.529804 8.2:+61602334 MS.gene016632:CDS
TCATCTAGATATATGGGTGC+AGG 0.531891 8.2:+61602097 MS.gene016632:CDS
AACCCTCATCGGACAAGTTG+AGG 0.552363 8.2:-61601773 None:intergenic
GTATCTTGGATGAGGGTCCA+TGG 0.552407 8.2:+61602003 MS.gene016632:CDS
ACACTGCTGCTGTTCCTGCT+GGG 0.555998 8.2:+61602525 MS.gene016632:CDS
TTCTGATGTTAGTGCTATGG+GGG 0.556540 8.2:+61602920 MS.gene016632:CDS
ACAGTGATCGGGACAACACC+AGG 0.561307 8.2:-61602065 None:intergenic
GCATCATTAAAAGGAACAGC+AGG 0.565904 8.2:-61602753 None:intergenic
AAATTGTGTAAATTCCCAGC+AGG 0.568311 8.2:-61602539 None:intergenic
ATGTCCCGAGCATGGAAACC+AGG 0.570807 8.2:+61601906 MS.gene016632:CDS
CATATATCTAGATGATTCAA+CGG 0.571224 8.2:-61602089 None:intergenic
TGGCCTCAACTTGTCCGATG+AGG 0.574042 8.2:+61601770 MS.gene016632:CDS
ATTCAACCAAAGGTCGGTCA+AGG 0.574834 8.2:+61602143 MS.gene016632:CDS
ATTAAGGGCCAAACCCTCAT+CGG 0.576533 8.2:-61601784 None:intergenic
GTGAATGTATGTCCCGAGCA+TGG 0.583447 8.2:+61601898 MS.gene016632:CDS
GTTAATTACTCTCAAGGTGG+CGG 0.584663 8.2:+61602780 MS.gene016632:CDS
ATCAGCATCAGATTTGATGA+TGG 0.585328 8.2:-61601940 None:intergenic
ACGACGGTGTGCGCAACTGG+GGG 0.585349 8.2:+61602378 MS.gene016632:CDS
TTGCGGCCAGCAGAAACTCC+AGG 0.588574 8.2:-61602503 None:intergenic
CCAGTTGCGCACACCGTCGT+CGG 0.590885 8.2:-61602375 None:intergenic
TCATCAAATCTGATGCTGAT+CGG 0.593354 8.2:+61601943 MS.gene016632:CDS
CATAAGAACCATTGTTGGCA+CGG 0.594437 8.2:-61602256 None:intergenic
GGAAGAAGTTCCATTATGAA+GGG 0.594455 8.2:-61602859 None:intergenic
TCAAGCAGTGTTCAATGATG+GGG 0.595097 8.2:-61601830 None:intergenic
AGTTGAGGCCATCAATGTTG+AGG 0.596402 8.2:-61601758 None:intergenic
GGATTCATTCAACCAAAGGT+CGG 0.597444 8.2:+61602137 MS.gene016632:CDS
TGGAAAGTCCGTGCCAACAA+TGG 0.601334 8.2:+61602248 MS.gene016632:CDS
TCGCATATAAGAGCTGTGAA+TGG 0.603035 8.2:-61602183 None:intergenic
CAGGAACAGCAGCAGTGTTG+CGG 0.605989 8.2:-61602520 None:intergenic
AATGGTACTAATGATGATGC+TGG 0.609753 8.2:+61602804 MS.gene016632:CDS
GAGCAGCATCGAGTTTGTGA+TGG 0.613336 8.2:-61601980 None:intergenic
CAAAACCCCATCAACAGCAA+AGG 0.615658 8.2:-61602880 None:intergenic
TGGAAGTTGTCATATAGCCA+TGG 0.616309 8.2:-61602020 None:intergenic
GCTGCTCGTATCTTGGATGA+GGG 0.620639 8.2:+61601996 MS.gene016632:CDS
GGTCGGCTGCTAACAACAAG+TGG 0.622689 8.2:+61602432 MS.gene016632:CDS
GCTGGTGTTAATTACTCTCA+AGG 0.622994 8.2:+61602774 MS.gene016632:CDS
TGTTCTTGGTGCTCAAACAG+CGG 0.637345 8.2:+61602613 MS.gene016632:CDS
GTTCTGATGTTAGTGCTATG+GGG 0.651450 8.2:+61602919 MS.gene016632:CDS
CAAGCAGTGTTCAATGATGG+GGG 0.659870 8.2:-61601829 None:intergenic
GGCCAGCAGAAACTCCAGGT+TGG 0.673003 8.2:-61602499 None:intergenic
CATACATTCACTGAAGTAAG+CGG 0.674332 8.2:-61601886 None:intergenic
CGTTTCTACACGTATAGGGT+CGG 0.681883 8.2:+61602415 MS.gene016632:CDS
GGTGTTAATTACTCTCAAGG+TGG 0.716248 8.2:+61602777 MS.gene016632:CDS
GGACAACACCAGGAGCAATG+CGG 0.756747 8.2:-61602055 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTTAAATATGAGAAACT+AGG + chr8.2:61602287-61602306 MS.gene016632:CDS 20.0%
! CATATATCTAGATGATTCAA+CGG - chr8.2:61602092-61602111 None:intergenic 25.0%
! GTTGAATCATCTAGATATAT+GGG + chr8.2:61602091-61602110 MS.gene016632:CDS 25.0%
AGTAACATAAGAACCATTGT+TGG - chr8.2:61602264-61602283 None:intergenic 30.0%
CGTTGAATCATCTAGATATA+TGG + chr8.2:61602090-61602109 MS.gene016632:CDS 30.0%
TGACAACTTCCATATAGTTA+TGG + chr8.2:61602031-61602050 MS.gene016632:CDS 30.0%
TTAACACCAGCATCATTAAA+AGG - chr8.2:61602765-61602784 None:intergenic 30.0%
! TTTTGGATTCATTCAACCAA+AGG + chr8.2:61602133-61602152 MS.gene016632:CDS 30.0%
!!! GTTTTGGGAAATGATGTAAT+AGG + chr8.2:61602897-61602916 MS.gene016632:CDS 30.0%
AAATTGTGTAAATTCCCAGC+AGG - chr8.2:61602542-61602561 None:intergenic 35.0%
AAGAGCTGTGAATGGTATTA+CGG - chr8.2:61602178-61602197 None:intergenic 35.0%
AGGAAGAAGTTCCATTATGA+AGG - chr8.2:61602863-61602882 None:intergenic 35.0%
ATCAAGCAGTGTTCAATGAT+GGG - chr8.2:61601834-61601853 None:intergenic 35.0%
ATCAGCATCAGATTTGATGA+TGG - chr8.2:61601943-61601962 None:intergenic 35.0%
ATCATTGAACACTGCTTGAT+CGG + chr8.2:61601834-61601853 MS.gene016632:CDS 35.0%
CATACATTCACTGAAGTAAG+CGG - chr8.2:61601889-61601908 None:intergenic 35.0%
GCTATTAAACAGGATGTTCT+TGG + chr8.2:61602599-61602618 MS.gene016632:CDS 35.0%
GGAAGAAGTTCCATTATGAA+GGG - chr8.2:61602862-61602881 None:intergenic 35.0%
TCATCAAATCTGATGCTGAT+CGG + chr8.2:61601943-61601962 MS.gene016632:CDS 35.0%
TGCTATTCTCGCTATTAAAC+AGG + chr8.2:61602589-61602608 MS.gene016632:CDS 35.0%
TGTTAGTGCACCATTGAAAA+AGG + chr8.2:61602223-61602242 MS.gene016632:CDS 35.0%
! AATGGTACTAATGATGATGC+TGG + chr8.2:61602804-61602823 MS.gene016632:CDS 35.0%
! TACTAATGATGATGCTGGTT+CGG + chr8.2:61602809-61602828 MS.gene016632:CDS 35.0%
!!! ACTTTCCACTCCTTTTTCAA+TGG - chr8.2:61602236-61602255 None:intergenic 35.0%
!!! GGTGTTTTTTGTTACATGTG+TGG + chr8.2:61602308-61602327 MS.gene016632:CDS 35.0%
CAATGCGGTCCATAACTATA+TGG - chr8.2:61602043-61602062 None:intergenic 40.0%
CATAAGAACCATTGTTGGCA+CGG - chr8.2:61602259-61602278 None:intergenic 40.0%
CCATCAATGTTGAGGTTCAT+GGG - chr8.2:61601753-61601772 None:intergenic 40.0%
GAGTCCAATTCGAACAAATC+CGG - chr8.2:61602356-61602375 None:intergenic 40.0%
GATCAAGCAGTGTTCAATGA+TGG - chr8.2:61601835-61601854 None:intergenic 40.0%
GCATCATTAAAAGGAACAGC+AGG - chr8.2:61602756-61602775 None:intergenic 40.0%
GGATTCATTCAACCAAAGGT+CGG + chr8.2:61602137-61602156 MS.gene016632:CDS 40.0%
GGGAAGGCAGAAATTGAATT+TGG - chr8.2:61602674-61602693 None:intergenic 40.0%
GGTGTCAGCAGCTATATTAA+GGG - chr8.2:61601802-61601821 None:intergenic 40.0%
GGTGTTAATTACTCTCAAGG+TGG + chr8.2:61602777-61602796 MS.gene016632:CDS 40.0%
GTTAATTACTCTCAAGGTGG+CGG + chr8.2:61602780-61602799 MS.gene016632:CDS 40.0%
GTTCTGATGTTAGTGCTATG+GGG + chr8.2:61602919-61602938 MS.gene016632:CDS 40.0%
TCAAGCAGTGTTCAATGATG+GGG - chr8.2:61601833-61601852 None:intergenic 40.0%
TCATCTAGATATATGGGTGC+AGG + chr8.2:61602097-61602116 MS.gene016632:CDS 40.0%
TCGCATATAAGAGCTGTGAA+TGG - chr8.2:61602186-61602205 None:intergenic 40.0%
TGATTCAACGGAACAGTGAT+CGG - chr8.2:61602080-61602099 None:intergenic 40.0%
TGGAAGTTGTCATATAGCCA+TGG - chr8.2:61602023-61602042 None:intergenic 40.0%
TGTTACATGTGTGGCATTCT+CGG + chr8.2:61602317-61602336 MS.gene016632:CDS 40.0%
TTCTGATGTTAGTGCTATGG+GGG + chr8.2:61602920-61602939 MS.gene016632:CDS 40.0%
! AGGTTCTGATGTTAGTGCTA+TGG + chr8.2:61602917-61602936 MS.gene016632:CDS 40.0%
! GCTGGTGTTAATTACTCTCA+AGG + chr8.2:61602774-61602793 MS.gene016632:CDS 40.0%
! GCTGTTCCTTTTAATGATGC+TGG + chr8.2:61602756-61602775 MS.gene016632:CDS 40.0%
! GGTTCTGATGTTAGTGCTAT+GGG + chr8.2:61602918-61602937 MS.gene016632:CDS 40.0%
! TTCAATGATGGGGGATGATT+CGG - chr8.2:61601823-61601842 None:intergenic 40.0%
!! ACTTCTTCCTTTGCTGTTGA+TGG + chr8.2:61602873-61602892 MS.gene016632:CDS 40.0%
!! CTTCTTCCTTTGCTGTTGAT+GGG + chr8.2:61602874-61602893 MS.gene016632:CDS 40.0%
!! TTCTTCCTTTGCTGTTGATG+GGG + chr8.2:61602875-61602894 MS.gene016632:CDS 40.0%
!!! TTTGCTGTTGATGGGGTTTT+GGG + chr8.2:61602882-61602901 MS.gene016632:CDS 40.0%
AAGCCCGTTTCTACACGTAT+AGG + chr8.2:61602410-61602429 MS.gene016632:CDS 45.0%
AGCCCGTTTCTACACGTATA+GGG + chr8.2:61602411-61602430 MS.gene016632:CDS 45.0%
AGTTGAGGCCATCAATGTTG+AGG - chr8.2:61601761-61601780 None:intergenic 45.0%
ATGCCTTACCGAGCCAAAAT+GGG + chr8.2:61602474-61602493 MS.gene016632:CDS 45.0%
ATTAAGGGCCAAACCCTCAT+CGG - chr8.2:61601787-61601806 None:intergenic 45.0%
ATTCAACCAAAGGTCGGTCA+AGG + chr8.2:61602143-61602162 MS.gene016632:CDS 45.0%
CAAAACCCCATCAACAGCAA+AGG - chr8.2:61602883-61602902 None:intergenic 45.0%
CAAGCAGTGTTCAATGATGG+GGG - chr8.2:61601832-61601851 None:intergenic 45.0%
CCCATGAACCTCAACATTGA+TGG + chr8.2:61601750-61601769 MS.gene016632:CDS 45.0%
CGACCCTATACGTGTAGAAA+CGG - chr8.2:61602417-61602436 None:intergenic 45.0%
CGTGTGATTGCCCTTCATAA+TGG + chr8.2:61602849-61602868 MS.gene016632:CDS 45.0%
CGTTTCTACACGTATAGGGT+CGG + chr8.2:61602415-61602434 MS.gene016632:CDS 45.0%
GACCCTATACGTGTAGAAAC+GGG - chr8.2:61602416-61602435 None:intergenic 45.0%
GATATATGGGTGCAGGTTCA+TGG + chr8.2:61602104-61602123 MS.gene016632:CDS 45.0%
GATTCAACGGAACAGTGATC+GGG - chr8.2:61602079-61602098 None:intergenic 45.0%
GCCATCAATGTTGAGGTTCA+TGG - chr8.2:61601754-61601773 None:intergenic 45.0%
GTGCACCATTGAAAAAGGAG+TGG + chr8.2:61602228-61602247 MS.gene016632:CDS 45.0%
! AGCGGCTTTGATTTCTCGAT+TGG - chr8.2:61601871-61601890 None:intergenic 45.0%
! CAGTCCGGATTTGTTCGAAT+TGG + chr8.2:61602349-61602368 MS.gene016632:CDS 45.0%
! CATCGAGTTTGTGATGGAAC+TGG - chr8.2:61601977-61601996 None:intergenic 45.0%
! CGGTGTCAGCAGCTATATTA+AGG - chr8.2:61601803-61601822 None:intergenic 45.0%
! TCGGTAAGGCATCAGGTATA+GGG - chr8.2:61602466-61602485 None:intergenic 45.0%
!! CAGGTTCATGGCTTGTCTTT+TGG + chr8.2:61602116-61602135 MS.gene016632:CDS 45.0%
!! TGTTCTTGGTGCTCAAACAG+CGG + chr8.2:61602613-61602632 MS.gene016632:CDS 45.0%
!!! CTTTGCTGTTGATGGGGTTT+TGG + chr8.2:61602881-61602900 MS.gene016632:CDS 45.0%
AACCCTCATCGGACAAGTTG+AGG - chr8.2:61601776-61601795 None:intergenic 50.0%
ACTCGATGCTGCTCGTATCT+TGG + chr8.2:61601989-61602008 MS.gene016632:CDS 50.0%
AGGCAAACACATGGTGTGAC+GGG + chr8.2:61602639-61602658 MS.gene016632:intron 50.0%
ATGATGGTCACACGCTTTCC+TGG - chr8.2:61601927-61601946 None:intergenic 50.0%
CAACTTGTCCGATGAGGGTT+TGG + chr8.2:61601776-61601795 MS.gene016632:CDS 50.0%
CAGGCAAACACATGGTGTGA+CGG + chr8.2:61602638-61602657 MS.gene016632:intron 50.0%
CCAAAGGTCGGTCAAGGAAT+TGG + chr8.2:61602149-61602168 MS.gene016632:CDS 50.0%
CCAATTCCTTGACCGACCTT+TGG - chr8.2:61602152-61602171 None:intergenic 50.0%
CTTTCCTGGTTTCCATGCTC+GGG - chr8.2:61601913-61601932 None:intergenic 50.0%
GATGCCTTACCGAGCCAAAA+TGG + chr8.2:61602473-61602492 MS.gene016632:CDS 50.0%
GCTGCTCGTATCTTGGATGA+GGG + chr8.2:61601996-61602015 MS.gene016632:CDS 50.0%
GCTTTCCTGGTTTCCATGCT+CGG - chr8.2:61601914-61601933 None:intergenic 50.0%
GTATCTTGGATGAGGGTCCA+TGG + chr8.2:61602003-61602022 MS.gene016632:CDS 50.0%
GTGAATGTATGTCCCGAGCA+TGG + chr8.2:61601898-61601917 MS.gene016632:CDS 50.0%
TCTCGGTCATTCAGACAGTC+CGG + chr8.2:61602334-61602353 MS.gene016632:CDS 50.0%
TGCTAACAACAAGTGGCTGC+AGG + chr8.2:61602439-61602458 MS.gene016632:CDS 50.0%
TGCTGCTCGTATCTTGGATG+AGG + chr8.2:61601995-61602014 MS.gene016632:CDS 50.0%
TGGAAAGTCCGTGCCAACAA+TGG + chr8.2:61602248-61602267 MS.gene016632:CDS 50.0%
TTCCAACCTGGAGTTTCTGC+TGG + chr8.2:61602497-61602516 MS.gene016632:CDS 50.0%
TTCGAATTGGACTCCGACGA+CGG + chr8.2:61602362-61602381 MS.gene016632:CDS 50.0%
TTTCTGCCTTCCCCATCTTC+TGG + chr8.2:61602681-61602700 MS.gene016632:intron 50.0%
! AGCCAAAATGGGTTCCAACC+TGG + chr8.2:61602485-61602504 MS.gene016632:CDS 50.0%
! CTCGGTAAGGCATCAGGTAT+AGG - chr8.2:61602467-61602486 None:intergenic 50.0%
! CTGCTTGATCGGTCGTGTTT+TGG + chr8.2:61601845-61601864 MS.gene016632:CDS 50.0%
! GAGCAGCATCGAGTTTGTGA+TGG - chr8.2:61601983-61602002 None:intergenic 50.0%
! GTAGAAACGGGCTTGAGATC+AGG - chr8.2:61602404-61602423 None:intergenic 50.0%
! TACTCTCAAGGTGGCGGTAA+TGG + chr8.2:61602786-61602805 MS.gene016632:CDS 50.0%
!! CTCCAGGTTGGAACCCATTT+TGG - chr8.2:61602490-61602509 None:intergenic 50.0%
!!! GAACCCATTTTGGCTCGGTA+AGG - chr8.2:61602480-61602499 None:intergenic 50.0%
!!! GGTTGGAACCCATTTTGGCT+CGG - chr8.2:61602485-61602504 None:intergenic 50.0%
!!! TTTTGGCTCGGTAAGGCATC+AGG - chr8.2:61602473-61602492 None:intergenic 50.0%
AACACTGCTGCTGTTCCTGC+TGG + chr8.2:61602524-61602543 MS.gene016632:CDS 55.0%
ACACTGCTGCTGTTCCTGCT+GGG + chr8.2:61602525-61602544 MS.gene016632:CDS 55.0%
ACAGTGATCGGGACAACACC+AGG - chr8.2:61602068-61602087 None:intergenic 55.0%
ATGTCCCGAGCATGGAAACC+AGG + chr8.2:61601906-61601925 MS.gene016632:CDS 55.0%
CAGGAACAGCAGCAGTGTTG+CGG - chr8.2:61602523-61602542 None:intergenic 55.0%
CAGGGTCGTTCACTACTGCT+TGG + chr8.2:61602726-61602745 MS.gene016632:intron 55.0%
GGACAACACCAGGAGCAATG+CGG - chr8.2:61602058-61602077 None:intergenic 55.0%
GGCCTCAACTTGTCCGATGA+GGG + chr8.2:61601771-61601790 MS.gene016632:CDS 55.0%
GGTCGGCTGCTAACAACAAG+TGG + chr8.2:61602432-61602451 MS.gene016632:CDS 55.0%
GTTATGGACCGCATTGCTCC+TGG + chr8.2:61602047-61602066 MS.gene016632:CDS 55.0%
TGGCCTCAACTTGTCCGATG+AGG + chr8.2:61601770-61601789 MS.gene016632:CDS 55.0%
TTCCCCATCTTCTGGTGCCT+CGG + chr8.2:61602689-61602708 MS.gene016632:intron 55.0%
!! ACACATGGTGTGACGGGTTC+TGG + chr8.2:61602645-61602664 MS.gene016632:intron 55.0%
ACGACCCTGCAGCAGGTTAG+AGG - chr8.2:61602715-61602734 None:intergenic 60.0%
CAGCGGTGCAGGCAAACACA+TGG + chr8.2:61602630-61602649 MS.gene016632:intron 60.0%
GGCCAGCAGAAACTCCAGGT+TGG - chr8.2:61602502-61602521 None:intergenic 60.0%
GTAGTGAACGACCCTGCAGC+AGG - chr8.2:61602722-61602741 None:intergenic 60.0%
TCGGCCTCTAACCTGCTGCA+GGG + chr8.2:61602708-61602727 MS.gene016632:intron 60.0%
TGGTGCTCAAACAGCGGTGC+AGG + chr8.2:61602619-61602638 MS.gene016632:intron 60.0%
TTGCGGCCAGCAGAAACTCC+AGG - chr8.2:61602506-61602525 None:intergenic 60.0%
! AGGCCGAGGCACCAGAAGAT+GGG - chr8.2:61602695-61602714 None:intergenic 60.0%
! GAGGCACCAGAAGATGGGGA+AGG - chr8.2:61602690-61602709 None:intergenic 60.0%
ACGACGGTGTGCGCAACTGG+GGG + chr8.2:61602378-61602397 MS.gene016632:CDS 65.0%
CCAGTTGCGCACACCGTCGT+CGG - chr8.2:61602378-61602397 None:intergenic 65.0%
CGACGACGGTGTGCGCAACT+GGG + chr8.2:61602376-61602395 MS.gene016632:CDS 65.0%
CTCGGCCTCTAACCTGCTGC+AGG + chr8.2:61602707-61602726 MS.gene016632:intron 65.0%
CTGCAGCAGGTTAGAGGCCG+AGG - chr8.2:61602709-61602728 None:intergenic 65.0%
GACGACGGTGTGCGCAACTG+GGG + chr8.2:61602377-61602396 MS.gene016632:CDS 65.0%
! GAGGCCGAGGCACCAGAAGA+TGG - chr8.2:61602696-61602715 None:intergenic 65.0%
! GGCCGAGGCACCAGAAGATG+GGG - chr8.2:61602694-61602713 None:intergenic 65.0%
CCGACGACGGTGTGCGCAAC+TGG + chr8.2:61602375-61602394 MS.gene016632:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 61601744 61602950 61601744 ID=MS.gene016632
chr8.2 mRNA 61601744 61602950 61601744 ID=MS.gene016632.t1;Parent=MS.gene016632
chr8.2 exon 61601744 61602634 61601744 ID=MS.gene016632.t1.exon1;Parent=MS.gene016632.t1
chr8.2 CDS 61601744 61602634 61601744 ID=cds.MS.gene016632.t1;Parent=MS.gene016632.t1
chr8.2 exon 61602729 61602950 61602729 ID=MS.gene016632.t1.exon2;Parent=MS.gene016632.t1
chr8.2 CDS 61602729 61602950 61602729 ID=cds.MS.gene016632.t1;Parent=MS.gene016632.t1
Gene Sequence

>MS.gene016632

ATGGATCCCATGAACCTCAACATTGATGGCCTCAACTTGTCCGATGAGGGTTTGGCCCTTAATATAGCTGCTGACACCGAATCATCCCCCATCATTGAACACTGCTTGATCGGTCGTGTTTTGGCCAATCGAGAAATCAAAGCCGCTTACTTCAGTGAATGTATGTCCCGAGCATGGAAACCAGGAAAGCGTGTGACCATCATCAAATCTGATGCTGATCGGTTTCTGTTCCAGTTCCATCACAAACTCGATGCTGCTCGTATCTTGGATGAGGGTCCATGGCTATATGACAACTTCCATATAGTTATGGACCGCATTGCTCCTGGTGTTGTCCCGATCACTGTTCCGTTGAATCATCTAGATATATGGGTGCAGGTTCATGGCTTGTCTTTTGGATTCATTCAACCAAAGGTCGGTCAAGGAATTGGAAGCCGTAATACCATTCACAGCTCTTATATGCGACTCAAAGTGCGAATTGATGTTAGTGCACCATTGAAAAAGGAGTGGAAAGTCCGTGCCAACAATGGTTCTTATGTTACTGTTTTGTTTAAATATGAGAAACTAGGTGTTTTTTGTTACATGTGTGGCATTCTCGGTCATTCAGACAGTCCGGATTTGTTCGAATTGGACTCCGACGACGGTGTGCGCAACTGGGGGCCTGATCTCAAGCCCGTTTCTACACGTATAGGGTCGGCTGCTAACAACAAGTGGCTGCAGGACCCTATACCTGATGCCTTACCGAGCCAAAATGGGTTCCAACCTGGAGTTTCTGCTGGCCGCAACACTGCTGCTGTTCCTGCTGGGAATTTACACAATTTTAATGACTGTATGCTTGCTGTTGATAATGCTATTCTCGCTATTAAACAGGATGTTCTTGGTGCTCAAACAGCGGTGCAGGCAAACACATGGTGTGACGGGTTCTGGCTGCCAAATTCAATTTCTGCCTTCCCCATCTTCTGGTGCCTCGGCCTCTAACCTGCTGCAGGGTCGTTCACTACTGCTTGGACTGCCTGCTGTTCCTTTTAATGATGCTGGTGTTAATTACTCTCAAGGTGGCGGTAATGGTACTAATGATGATGCTGGTTCGGAATTGAAGAAGAGAAAGCGTGTGATTGCCCTTCATAATGGAACTTCTTCCTTTGCTGTTGATGGGGTTTTGGGAAATGATGTAATAGGTTCTGATGTTAGTGCTATGGGGGATTCTTAA
Protein sequence

>MS.gene016632.t1

MDPMNLNIDGLNLSDEGLALNIAADTESSPIIEHCLIGRVLANREIKAAYFSECMSRAWKPGKRVTIIKSDADRFLFQFHHKLDAARILDEGPWLYDNFHIVMDRIAPGVVPITVPLNHLDIWVQVHGLSFGFIQPKVGQGIGSRNTIHSSYMRLKVRIDVSAPLKKEWKVRANNGSYVTVLFKYEKLGVFCYMCGILGHSDSPDLFELDSDDGVRNWGPDLKPVSTRIGSAANNKWLQDPIPDALPSQNGFQPGVSAGRNTAAVPAGNLHNFNDCMLAVDNAILAIKQDVLGAQTAGRSLLLGLPAVPFNDAGVNYSQGGGNGTNDDAGSELKKRKRVIALHNGTSSFAVDGVLGNDVIGSDVSAMGDS