Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061850.t1 | XP_024630605.1 | 63.5 | 271 | 90 | 2 | 84 | 354 | 48 | 309 | 1.30E-94 | 357.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061850.t1 | O04244 | 26.5 | 136 | 96 | 2 | 83 | 216 | 6 | 139 | 1.2e-08 | 63.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061850.t1 | A0A2K3L2W5 | 40.4 | 463 | 234 | 10 | 6 | 463 | 125 | 550 | 5.8e-84 | 322.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061850.t1 | MTR_3g053920 | 47.590 | 332 | 107 | 3 | 1 | 332 | 1 | 265 | 1.40e-94 | 297 |
| MS.gene061850.t1 | MTR_4g020630 | 60.440 | 182 | 72 | 0 | 404 | 585 | 119 | 300 | 1.12e-70 | 241 |
| MS.gene061850.t1 | MTR_8g463110 | 61.272 | 173 | 67 | 0 | 413 | 585 | 192 | 364 | 4.36e-67 | 236 |
| MS.gene061850.t1 | MTR_2g061500 | 70.543 | 129 | 38 | 0 | 1 | 129 | 1 | 129 | 1.75e-60 | 201 |
| MS.gene061850.t1 | MTR_6g034215 | 61.417 | 127 | 49 | 0 | 415 | 541 | 198 | 324 | 1.75e-46 | 169 |
| MS.gene061850.t1 | MTR_3g044860 | 65.323 | 124 | 17 | 1 | 413 | 536 | 84 | 181 | 7.53e-46 | 166 |
| MS.gene061850.t1 | MTR_4g103530 | 74.194 | 93 | 24 | 0 | 55 | 147 | 1 | 93 | 9.30e-44 | 157 |
| MS.gene061850.t1 | MTR_7g011710 | 65.882 | 85 | 29 | 0 | 55 | 139 | 1 | 85 | 2.65e-33 | 126 |
| MS.gene061850.t1 | MTR_6g033215 | 31.461 | 178 | 118 | 2 | 26 | 199 | 117 | 294 | 9.16e-32 | 126 |
| MS.gene061850.t1 | MTR_0010s0370 | 35.227 | 176 | 108 | 3 | 7 | 177 | 3 | 177 | 1.61e-29 | 116 |
| MS.gene061850.t1 | MTR_0010s0350 | 35.227 | 176 | 108 | 3 | 7 | 177 | 3 | 177 | 1.61e-29 | 116 |
| MS.gene061850.t1 | MTR_7g063500 | 58.824 | 85 | 35 | 0 | 481 | 565 | 38 | 122 | 1.72e-29 | 114 |
| MS.gene061850.t1 | MTR_5g069440 | 45.455 | 132 | 65 | 4 | 463 | 592 | 33 | 159 | 6.86e-27 | 108 |
| MS.gene061850.t1 | MTR_1g100687 | 41.346 | 104 | 61 | 0 | 410 | 513 | 127 | 230 | 4.10e-24 | 102 |
| MS.gene061850.t1 | MTR_7g056813 | 54.118 | 85 | 37 | 1 | 481 | 565 | 8 | 90 | 1.27e-22 | 101 |
| MS.gene061850.t1 | MTR_1g051330 | 32.759 | 174 | 98 | 3 | 410 | 581 | 344 | 500 | 1.16e-20 | 97.8 |
| MS.gene061850.t1 | MTR_7g015270 | 72.000 | 50 | 14 | 0 | 536 | 585 | 99 | 148 | 5.51e-17 | 81.6 |
| MS.gene061850.t1 | MTR_2g063055 | 27.848 | 158 | 107 | 2 | 414 | 569 | 26 | 178 | 1.73e-15 | 75.9 |
| MS.gene061850.t1 | MTR_6g009010 | 50.000 | 66 | 33 | 0 | 410 | 475 | 196 | 261 | 9.32e-15 | 75.9 |
| MS.gene061850.t1 | MTR_0042s0130 | 33.962 | 106 | 70 | 0 | 410 | 515 | 228 | 333 | 4.39e-13 | 72.0 |
| MS.gene061850.t1 | MTR_1g036720 | 33.645 | 107 | 69 | 1 | 7 | 111 | 3 | 109 | 5.77e-13 | 66.2 |
| MS.gene061850.t1 | MTR_1g062290 | 50.000 | 54 | 27 | 0 | 410 | 463 | 4 | 57 | 1.23e-12 | 67.4 |
| MS.gene061850.t1 | MTR_7g033160 | 44.615 | 65 | 36 | 0 | 520 | 584 | 6 | 70 | 1.70e-12 | 64.3 |
| MS.gene061850.t1 | MTR_5g085210 | 30.000 | 140 | 86 | 2 | 501 | 636 | 6 | 137 | 4.54e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061850.t1 | AT3G31430 | 30.093 | 216 | 130 | 8 | 14 | 215 | 103 | 311 | 4.67e-19 | 89.7 |
| MS.gene061850.t1 | AT3G57587 | 27.568 | 185 | 126 | 4 | 36 | 216 | 39 | 219 | 5.57e-16 | 80.9 |
| MS.gene061850.t1 | AT2G17920 | 25.926 | 216 | 148 | 4 | 8 | 216 | 9 | 219 | 6.50e-16 | 80.1 |
| MS.gene061850.t1 | AT2G41590 | 27.568 | 185 | 126 | 4 | 36 | 216 | 39 | 219 | 7.06e-16 | 80.9 |
| MS.gene061850.t1 | AT5G36228 | 27.411 | 197 | 136 | 4 | 36 | 227 | 39 | 233 | 1.22e-14 | 77.0 |
| MS.gene061850.t1 | AT5G18636 | 26.776 | 183 | 130 | 2 | 36 | 216 | 39 | 219 | 3.47e-14 | 75.5 |
| MS.gene061850.t1 | AT5G25200 | 26.776 | 183 | 130 | 2 | 36 | 216 | 39 | 219 | 3.87e-14 | 75.5 |
| MS.gene061850.t1 | AT2G13450 | 26.374 | 182 | 130 | 2 | 36 | 215 | 39 | 218 | 1.14e-13 | 74.3 |
| MS.gene061850.t1 | AT2G02103 | 27.568 | 185 | 126 | 4 | 36 | 216 | 39 | 219 | 1.49e-13 | 73.9 |
| MS.gene061850.t1 | AT3G47920 | 27.465 | 142 | 99 | 2 | 77 | 216 | 9 | 148 | 1.48e-11 | 66.6 |
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGATGCTAAAACCTTTA+TGG | 0.094782 | 7.4:+11142583 | MS.gene061850:CDS |
| CTGGATTGTCATTCAGGTTT+AGG | 0.173372 | 7.4:-11134920 | None:intergenic |
| TGAGTTAGCATTGAATTTAT+TGG | 0.177098 | 7.4:+11142397 | MS.gene061850:CDS |
| TTGCCCTGCCTCAGCCTTTC+CGG | 0.179278 | 7.4:-11142633 | None:intergenic |
| AAAACCCAACTTTAAGAAAA+AGG | 0.209846 | 7.4:+11143057 | MS.gene061850:CDS |
| ACTTTGGATTGAATTCTTAA+AGG | 0.216606 | 7.4:-11143134 | None:intergenic |
| TCGTATCTGGATTGTCATTC+AGG | 0.228268 | 7.4:-11134926 | None:intergenic |
| TCAGGCAATGTTCCAAGATT+TGG | 0.250652 | 7.4:-11134950 | None:intergenic |
| TTGGTTTGCAGAACTATTTA+AGG | 0.251698 | 7.4:-11142327 | None:intergenic |
| AACCATTCTTTCCACTCTTA+TGG | 0.254212 | 7.4:-11142952 | None:intergenic |
| TGCCATCTGTTCACTAAAAT+AGG | 0.260865 | 7.4:-11135009 | None:intergenic |
| TGGATTGTCATTCAGGTTTA+GGG | 0.265988 | 7.4:-11134919 | None:intergenic |
| GGTGAAAGATATGCCATTTC+CGG | 0.275314 | 7.4:+11142614 | MS.gene061850:CDS |
| TGCTATAGGTGTGGCCTTCT+CGG | 0.279598 | 7.4:+11135467 | MS.gene061850:CDS |
| CCGAGAACTGATAATGCTTT+TGG | 0.280565 | 7.4:+11135638 | MS.gene061850:CDS |
| TATCTCAAGAAGATGCTTAT+TGG | 0.280958 | 7.4:+11137204 | MS.gene061850:CDS |
| TCCAAGATTTGGGTCGTATC+TGG | 0.288452 | 7.4:-11134939 | None:intergenic |
| GTTTCAATTCCATCACAAAA+TGG | 0.293814 | 7.4:+11135091 | MS.gene061850:CDS |
| CAGGTTCTTTATGCGGTTAA+AGG | 0.300775 | 7.4:+11135340 | MS.gene061850:CDS |
| TTTGCTGATGATGGGACTAA+TGG | 0.309948 | 7.4:+11136067 | MS.gene061850:CDS |
| TCCCCGTTAGAATCTCTATT+TGG | 0.312835 | 7.4:-11142346 | None:intergenic |
| TGCCTCAGCCTTTCCGGAAA+TGG | 0.336174 | 7.4:-11142627 | None:intergenic |
| CAAGTCCATGGCTTACCCTT+TGG | 0.344349 | 7.4:+11135236 | MS.gene061850:CDS |
| ATCATACCTCATGTTAATAA+AGG | 0.362818 | 7.4:-11142666 | None:intergenic |
| ACTATTTAAGGAAAAGGAAA+TGG | 0.363822 | 7.4:-11142315 | None:intergenic |
| CAGGCAATGTTCCAAGATTT+GGG | 0.364728 | 7.4:-11134949 | None:intergenic |
| TGAACAAAAGACATATAATA+AGG | 0.366160 | 7.4:+11142478 | MS.gene061850:CDS |
| TTCACCAACAGAAGCCATAA+AGG | 0.368254 | 7.4:-11142597 | None:intergenic |
| TTGCTGATGATGGGACTAAT+GGG | 0.376633 | 7.4:+11136068 | MS.gene061850:CDS |
| TTCTTTCCACTCTTATGGTT+AGG | 0.377973 | 7.4:-11142947 | None:intergenic |
| TGCCTTGACCAACCCTTTGT+TGG | 0.379167 | 7.4:-11135265 | None:intergenic |
| TGCAGAACTATTTAAGGAAA+AGG | 0.379269 | 7.4:-11142321 | None:intergenic |
| TCTTCCTCAGCCGCACCAAC+TGG | 0.383911 | 7.4:-11137166 | None:intergenic |
| TTTGAGCTGGATTCTGATGA+TGG | 0.388617 | 7.4:+11135518 | MS.gene061850:CDS |
| TCCAGATACGACCCAAATCT+TGG | 0.390239 | 7.4:+11134938 | MS.gene061850:CDS |
| GAGTCATTGTGCGGCTGATA+TGG | 0.392180 | 7.4:+11137040 | MS.gene061850:CDS |
| GCCGCACAATGACTCAATTT+AGG | 0.402020 | 7.4:-11137032 | None:intergenic |
| TGGACCTTCATCTAGGACTT+TGG | 0.406360 | 7.4:-11135120 | None:intergenic |
| CCAAAAGCATTATCAGTTCT+CGG | 0.406482 | 7.4:-11135638 | None:intergenic |
| CCGCTAACACGCGTCCGATC+AGG | 0.410512 | 7.4:-11134968 | None:intergenic |
| AACCAAATAGAGATTCTAAC+GGG | 0.411532 | 7.4:+11142344 | MS.gene061850:CDS |
| ATTGAGTCGGCCACCTAGAC+TGG | 0.411981 | 7.4:-11135714 | None:intergenic |
| CACTTTAAGTACGAGAAGTT+GGG | 0.413878 | 7.4:+11135437 | MS.gene061850:CDS |
| TCACTTTAAGTACGAGAAGT+TGG | 0.414143 | 7.4:+11135436 | MS.gene061850:CDS |
| TCAGCCGCACCAACTGGTCT+TGG | 0.421806 | 7.4:-11137160 | None:intergenic |
| CATGAAAGAATTTCGTGTTC+CGG | 0.422473 | 7.4:-11137265 | None:intergenic |
| CAAGGCATTGGTCAATTCCT+TGG | 0.423750 | 7.4:+11135281 | MS.gene061850:CDS |
| AGTCTGAAGCTGAGGATATC+AGG | 0.425922 | 7.4:+11135966 | MS.gene061850:CDS |
| TAAACTCAGCACAACAGGTT+TGG | 0.427879 | 7.4:-11135891 | None:intergenic |
| GGCTGAGGCAGGGCAATTGA+TGG | 0.432861 | 7.4:+11142640 | MS.gene061850:CDS |
| CAGCGAGGGTAAGGCCTTCA+AGG | 0.435192 | 7.4:-11134884 | None:intergenic |
| GCTTACCTTGGGTTTCACTT+TGG | 0.439073 | 7.4:-11143150 | None:intergenic |
| CGGGGAATAACTATAAGAAA+TGG | 0.439161 | 7.4:+11142363 | MS.gene061850:CDS |
| TTACCTGCGGCTCCCACAGA+TGG | 0.440237 | 7.4:+11135911 | MS.gene061850:CDS |
| CGACCTGTTGTTCGTCGTGT+TGG | 0.442199 | 7.4:+11135566 | MS.gene061850:CDS |
| ACTGATGCTCTCAACCTTGA+AGG | 0.444343 | 7.4:+11134870 | MS.gene061850:CDS |
| ATTTCCGGAAAGGCTGAGGC+AGG | 0.444592 | 7.4:+11142629 | MS.gene061850:CDS |
| CTATTTAAGGAAAAGGAAAT+GGG | 0.444743 | 7.4:-11142314 | None:intergenic |
| GTCCCAACACGACGAACAAC+AGG | 0.446798 | 7.4:-11135569 | None:intergenic |
| CGGCTCCCACAGATGGGGCT+AGG | 0.450075 | 7.4:+11135918 | MS.gene061850:CDS |
| ACAGCACGTTGCACAGCACC+AGG | 0.452653 | 7.4:-11135185 | None:intergenic |
| AACCTTCAGCAGCGAGGGTA+AGG | 0.454552 | 7.4:-11134893 | None:intergenic |
| GAGATTAATTCAATTAAGAA+TGG | 0.455482 | 7.4:+11135749 | MS.gene061850:CDS |
| TCCTCAGCTTCAGACTCATT+AGG | 0.461220 | 7.4:-11135959 | None:intergenic |
| GTGAACAGATGGCAAAAGCT+TGG | 0.461953 | 7.4:+11135018 | MS.gene061850:CDS |
| GCAGGTAAACTCAGCACAAC+AGG | 0.465066 | 7.4:-11135896 | None:intergenic |
| CATATCTGTTTGTGTGAAAG+AGG | 0.469280 | 7.4:+11142874 | MS.gene061850:CDS |
| TGTCCTCAAGAGATAATATT+CGG | 0.470072 | 7.4:-11137316 | None:intergenic |
| GCCCCATCTGTGGGAGCCGC+AGG | 0.470099 | 7.4:-11135914 | None:intergenic |
| TAATATTCAAAGTGAAGAAT+GGG | 0.471003 | 7.4:+11142838 | MS.gene061850:intron |
| GACCTGTTGTTCGTCGTGTT+GGG | 0.472405 | 7.4:+11135567 | MS.gene061850:CDS |
| CTTTCACACAAACAGATATG+AGG | 0.472918 | 7.4:-11142871 | None:intergenic |
| ATAATATTCAAAGTGAAGAA+TGG | 0.472936 | 7.4:+11142837 | MS.gene061850:intron |
| TGAAGATGAGGACGCTGCAC+CGG | 0.475955 | 7.4:-11136909 | None:intergenic |
| ACACCCATGGACCTTCATCT+AGG | 0.476274 | 7.4:-11135127 | None:intergenic |
| TAAACAAGGAAACAATAAGA+AGG | 0.477944 | 7.4:+11143006 | MS.gene061850:CDS |
| TACCTGCGGCTCCCACAGAT+GGG | 0.481053 | 7.4:+11135912 | MS.gene061850:CDS |
| AGTAATTGCCTTACCACTCT+TGG | 0.481894 | 7.4:-11135801 | None:intergenic |
| TATTCAACAGAATAGGATAA+TGG | 0.488131 | 7.4:-11136881 | None:intergenic |
| ATTGGTATCGAGACGGTGAC+CGG | 0.488617 | 7.4:+11137246 | MS.gene061850:CDS |
| CTCGGCATAACAGATGGTAT+AGG | 0.489870 | 7.4:-11135620 | None:intergenic |
| GTGCGGCTGATATGGTGAAT+TGG | 0.494475 | 7.4:+11137048 | MS.gene061850:CDS |
| GAAGATGAGGACGCTGCACC+GGG | 0.497962 | 7.4:-11136908 | None:intergenic |
| AGAATCGTAACACGCTTGAC+AGG | 0.498939 | 7.4:-11135044 | None:intergenic |
| ATCTTGGAACATTGCCTGAT+CGG | 0.502197 | 7.4:+11134954 | MS.gene061850:CDS |
| AAGACCAGTTGGTGCGGCTG+AGG | 0.502549 | 7.4:+11137162 | MS.gene061850:CDS |
| GGACTGCTGCCACTAATAGA+TGG | 0.506134 | 7.4:+11135588 | MS.gene061850:CDS |
| AATGTGAATATTTCCAGTCT+AGG | 0.511764 | 7.4:+11135701 | MS.gene061850:CDS |
| AGAATGAATCATTTGAGTAG+TGG | 0.513074 | 7.4:+11142902 | MS.gene061850:CDS |
| GGCCTTACCCTCGCTGCTGA+AGG | 0.514468 | 7.4:+11134891 | MS.gene061850:CDS |
| TTTAACTAATGTATCATCAA+TGG | 0.514597 | 7.4:-11142546 | None:intergenic |
| GTCTTGCAACCATCTATTAG+TGG | 0.519500 | 7.4:-11135597 | None:intergenic |
| TCGGCATAACAGATGGTATA+GGG | 0.522579 | 7.4:-11135619 | None:intergenic |
| AACCATAAGAGTGGAAAGAA+TGG | 0.523495 | 7.4:+11142950 | MS.gene061850:CDS |
| CTCTGCTACTGCTAGAAAGA+AGG | 0.525138 | 7.4:+11137289 | MS.gene061850:CDS |
| TTCAGTCCTAGCCCCATCTG+TGG | 0.526378 | 7.4:-11135924 | None:intergenic |
| CAAAGGGTTGGTCAAGGCAT+TGG | 0.526940 | 7.4:+11135269 | MS.gene061850:CDS |
| CCTGATCGGACGCGTGTTAG+CGG | 0.530838 | 7.4:+11134968 | MS.gene061850:CDS |
| GTTGGTGAATGATGCTTGGC+AGG | 0.533489 | 7.4:+11136986 | MS.gene061850:CDS |
| TGATGATGGTGTCCGTGAGT+GGG | 0.536027 | 7.4:+11135532 | MS.gene061850:CDS |
| GGGCTTCTATTCAACAGAAT+AGG | 0.536090 | 7.4:-11136888 | None:intergenic |
| GGCAGCGTGCTAAAACTCAT+TGG | 0.536269 | 7.4:+11137228 | MS.gene061850:CDS |
| TGCCATTTCCGGAAAGGCTG+AGG | 0.540377 | 7.4:+11142625 | MS.gene061850:CDS |
| AATGTCCGTCTCAATAGTAC+AGG | 0.540801 | 7.4:+11137131 | MS.gene061850:CDS |
| TTCACCAACTCCTTAAAACC+TGG | 0.542935 | 7.4:-11136972 | None:intergenic |
| AGCAGAGGCACTCGCAGATG+AGG | 0.543272 | 7.4:-11135852 | None:intergenic |
| GATTGTTCAAAATAACTCGC+TGG | 0.544251 | 7.4:+11135778 | MS.gene061850:CDS |
| AGGTTCACTTCAACTTCACT+TGG | 0.545084 | 7.4:-11143295 | None:intergenic |
| CTGATGATGGTGTCCGTGAG+TGG | 0.545373 | 7.4:+11135531 | MS.gene061850:CDS |
| AAGTCCTAGATGAAGGTCCA+TGG | 0.545680 | 7.4:+11135123 | MS.gene061850:CDS |
| CTCAAGAAGATGCTTATTGG+CGG | 0.549294 | 7.4:+11137207 | MS.gene061850:CDS |
| CTTTGTTGGATAAAACCAAA+GGG | 0.549654 | 7.4:-11135251 | None:intergenic |
| CTTAAAGTGAATAGTAACAT+AGG | 0.549858 | 7.4:-11135423 | None:intergenic |
| AGGTGTGCTAGTTGCAGTCA+AGG | 0.550782 | 7.4:-11142456 | None:intergenic |
| TTATCTCTTGAGGACACCTC+AGG | 0.550944 | 7.4:+11137323 | MS.gene061850:CDS |
| TAACCGAATATTATCTCTTG+AGG | 0.553625 | 7.4:+11137313 | MS.gene061850:CDS |
| ATCCAACAAAGGGTTGGTCA+AGG | 0.554362 | 7.4:+11135263 | MS.gene061850:CDS |
| AGAACCTGTGAACAGTGTTA+CGG | 0.554998 | 7.4:-11135325 | None:intergenic |
| TATTCTGTTGAATAGAAGCC+CGG | 0.556055 | 7.4:+11136890 | MS.gene061850:CDS |
| AAAAGACATATAATAAGGAA+TGG | 0.556571 | 7.4:+11142483 | MS.gene061850:CDS |
| AAACAAGGAAACAATAAGAA+GGG | 0.557431 | 7.4:+11143007 | MS.gene061850:CDS |
| GGATCTCTTAATAAGCATCA+AGG | 0.558303 | 7.4:-11142525 | None:intergenic |
| AGCATCATCAGAATTTGGAA+TGG | 0.560668 | 7.4:-11142570 | None:intergenic |
| GAACTAGATGCCATGTTGGA+TGG | 0.563874 | 7.4:-11143034 | None:intergenic |
| ACTTCTAACACTGCTGATGA+TGG | 0.565392 | 7.4:+11135677 | MS.gene061850:CDS |
| CGTACAATTTCATTTCTCCA+AGG | 0.565600 | 7.4:-11135298 | None:intergenic |
| GGTTAAACCTTCAGCAGCGA+GGG | 0.565778 | 7.4:-11134898 | None:intergenic |
| TCAGTCCTAGCCCCATCTGT+GGG | 0.567347 | 7.4:-11135923 | None:intergenic |
| AAAACCTTTATGGCTTCTGT+TGG | 0.572250 | 7.4:+11142593 | MS.gene061850:CDS |
| ATAGGATAATGGTCGGAGGA+TGG | 0.575806 | 7.4:-11136870 | None:intergenic |
| CTCGCTGGCCAAGAGTGGTA+AGG | 0.578234 | 7.4:+11135793 | MS.gene061850:CDS |
| CTAGTTGCAGTCAAGGCAGA+AGG | 0.578473 | 7.4:-11142449 | None:intergenic |
| TGGATTCCTTTATTAACATG+AGG | 0.582062 | 7.4:+11142660 | MS.gene061850:CDS |
| GTTGTTGATAGAATTGCCCC+TGG | 0.583683 | 7.4:+11135167 | MS.gene061850:CDS |
| AGATTGATATTGAAGAATGT+CGG | 0.585735 | 7.4:+11137096 | MS.gene061850:CDS |
| GGCTGAGGAAGAAAATGAGC+AGG | 0.586290 | 7.4:+11137177 | MS.gene061850:CDS |
| CCTTTGTTGGATAAAACCAA+AGG | 0.587354 | 7.4:-11135252 | None:intergenic |
| AGGAGTTGGTGAATGATGCT+TGG | 0.588196 | 7.4:+11136982 | MS.gene061850:CDS |
| GCTGCCAAAGTCCTAGATGA+AGG | 0.590179 | 7.4:+11135116 | MS.gene061850:CDS |
| CATATAATAAGGAATGGACA+AGG | 0.592718 | 7.4:+11142489 | MS.gene061850:CDS |
| AGTCCTAGATGAAGGTCCAT+GGG | 0.597784 | 7.4:+11135124 | MS.gene061850:CDS |
| TCCTAATGAGTCTGAAGCTG+AGG | 0.598120 | 7.4:+11135958 | MS.gene061850:CDS |
| AATAACTCGCTGGCCAAGAG+TGG | 0.600134 | 7.4:+11135788 | MS.gene061850:CDS |
| TCAGTTCTCGGCATAACAGA+TGG | 0.602574 | 7.4:-11135626 | None:intergenic |
| AAACCAAATAGAGATTCTAA+CGG | 0.603215 | 7.4:+11142343 | MS.gene061850:CDS |
| AAGATATGCCATTTCCGGAA+AGG | 0.603569 | 7.4:+11142619 | MS.gene061850:CDS |
| AGGTTATAACCAAGACCAGT+TGG | 0.603717 | 7.4:+11137151 | MS.gene061850:CDS |
| CTTCTTTCTAGCAGTAGCAG+AGG | 0.604063 | 7.4:-11137288 | None:intergenic |
| CTGTTCACAGGTTCTTTATG+CGG | 0.607270 | 7.4:+11135333 | MS.gene061850:CDS |
| TTTCCGGAAAGGCTGAGGCA+GGG | 0.610483 | 7.4:+11142630 | MS.gene061850:CDS |
| ACTAATGGGGATACTGAACT+AGG | 0.612381 | 7.4:+11136082 | MS.gene061850:CDS |
| AATAAAATCTCTGACAACAA+AGG | 0.613887 | 7.4:+11137347 | MS.gene061850:CDS |
| TTTCACACAAACAGATATGA+GGG | 0.615006 | 7.4:-11142870 | None:intergenic |
| GAAGCGGAAGAGAATGTTGG+CGG | 0.615142 | 7.4:+11136000 | MS.gene061850:CDS |
| GAGGCACTCGCAGATGAGGA+AGG | 0.615911 | 7.4:-11135848 | None:intergenic |
| AAAGAAGCGGAAGAGAATGT+TGG | 0.616773 | 7.4:+11135997 | MS.gene061850:CDS |
| ATGGACAAGGGCTAATAACA+AGG | 0.616933 | 7.4:+11142502 | MS.gene061850:CDS |
| AGCACGTTGCACAGCACCAG+GGG | 0.619087 | 7.4:-11135183 | None:intergenic |
| CCTTCTCGGTCATACTGACA+AGG | 0.620615 | 7.4:+11135481 | MS.gene061850:CDS |
| TAAAACCAAAGGGTAAGCCA+TGG | 0.622461 | 7.4:-11135241 | None:intergenic |
| CAACAGAATAGGATAATGGT+CGG | 0.622988 | 7.4:-11136877 | None:intergenic |
| ACCTGCGGCTCCCACAGATG+GGG | 0.623420 | 7.4:+11135913 | MS.gene061850:CDS |
| AAGCGTGTTACGATTCTGAA+AGG | 0.624865 | 7.4:+11135050 | MS.gene061850:CDS |
| TCGCAACCTAACCATAAGAG+TGG | 0.625050 | 7.4:+11142941 | MS.gene061850:CDS |
| CATTGACATTGCAATTCGAG+AGG | 0.626600 | 7.4:+11142421 | MS.gene061850:CDS |
| ACAACCGTAACACTGTTCAC+AGG | 0.626601 | 7.4:+11135321 | MS.gene061850:CDS |
| TATAACCTGTACTATTGAGA+CGG | 0.627469 | 7.4:-11137136 | None:intergenic |
| GATGATGGTGTCCGTGAGTG+GGG | 0.630929 | 7.4:+11135533 | MS.gene061850:CDS |
| ATTTAAGGAAAAGGAAATGG+GGG | 0.641129 | 7.4:-11142312 | None:intergenic |
| AAATTTCGTCTATGAAGATG+AGG | 0.644223 | 7.4:-11136921 | None:intergenic |
| GGGTTAAACCTTCAGCAGCG+AGG | 0.644636 | 7.4:-11134899 | None:intergenic |
| GAATAACTATAAGAAATGGA+AGG | 0.644970 | 7.4:+11142367 | MS.gene061850:CDS |
| TATTTAAGGAAAAGGAAATG+GGG | 0.646551 | 7.4:-11142313 | None:intergenic |
| TGCTGATGATGGGACTAATG+GGG | 0.647252 | 7.4:+11136069 | MS.gene061850:CDS |
| GTGAATATTTCCAGTCTAGG+TGG | 0.647269 | 7.4:+11135704 | MS.gene061850:CDS |
| GAAGGGTGCACCATCCAACA+TGG | 0.649010 | 7.4:+11143024 | MS.gene061850:CDS |
| TCAATCCAAAGTGAAACCCA+AGG | 0.652705 | 7.4:+11143145 | MS.gene061850:CDS |
| CCTTGTCAGTATGACCGAGA+AGG | 0.653416 | 7.4:-11135481 | None:intergenic |
| GCAACTCTACACCCCACTCA+CGG | 0.653515 | 7.4:-11135544 | None:intergenic |
| TCAGGTCAGAAATAAAGAAG+CGG | 0.654274 | 7.4:+11135984 | MS.gene061850:CDS |
| CATTGTGCAGAGCATTGAGT+CGG | 0.655171 | 7.4:-11135727 | None:intergenic |
| TGGCAGGTTCGAGCAAACAA+TGG | 0.655572 | 7.4:+11135398 | MS.gene061850:CDS |
| ATAACCAAGACCAGTTGGTG+CGG | 0.655945 | 7.4:+11137156 | MS.gene061850:CDS |
| AAAACTCATTGGTATCGAGA+CGG | 0.660358 | 7.4:+11137239 | MS.gene061850:CDS |
| AATGTTGAGAACAGTAGCAG+AGG | 0.666398 | 7.4:-11135867 | None:intergenic |
| TGAAAGTTATCATACACCCA+TGG | 0.666725 | 7.4:-11135140 | None:intergenic |
| CAGCACGTTGCACAGCACCA+GGG | 0.668664 | 7.4:-11135184 | None:intergenic |
| GCCTAAATTGAGTCATTGTG+CGG | 0.684346 | 7.4:+11137031 | MS.gene061850:CDS |
| CAGAATAGGATAATGGTCGG+AGG | 0.685631 | 7.4:-11136874 | None:intergenic |
| GGTCGGAGGATGGAGCAGCA+AGG | 0.687303 | 7.4:-11136860 | None:intergenic |
| ATATAATAAGGAATGGACAA+GGG | 0.700004 | 7.4:+11142490 | MS.gene061850:CDS |
| TGTTACGATTCTGAAAGGTG+AGG | 0.706907 | 7.4:+11135055 | MS.gene061850:CDS |
| TGTTGTGCTGAGTTTACCTG+CGG | 0.717593 | 7.4:+11135898 | MS.gene061850:CDS |
| TTGGCGGAATGTCTTCAAAG+TGG | 0.740422 | 7.4:+11136016 | MS.gene061850:CDS |
| ACCAAATAGAGATTCTAACG+GGG | 0.742287 | 7.4:+11142345 | MS.gene061850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 11134864 | 11143302 | 11134864 | ID=MS.gene061850 |
| chr7.4 | mRNA | 11134864 | 11143302 | 11134864 | ID=MS.gene061850.t1;Parent=MS.gene061850 |
| chr7.4 | exon | 11134864 | 11136103 | 11134864 | ID=MS.gene061850.t1.exon1;Parent=MS.gene061850.t1 |
| chr7.4 | CDS | 11134864 | 11136103 | 11134864 | ID=cds.MS.gene061850.t1;Parent=MS.gene061850.t1 |
| chr7.4 | exon | 11136856 | 11137368 | 11136856 | ID=MS.gene061850.t1.exon2;Parent=MS.gene061850.t1 |
| chr7.4 | CDS | 11136856 | 11137368 | 11136856 | ID=cds.MS.gene061850.t1;Parent=MS.gene061850.t1 |
| chr7.4 | exon | 11142312 | 11142681 | 11142312 | ID=MS.gene061850.t1.exon3;Parent=MS.gene061850.t1 |
| chr7.4 | CDS | 11142312 | 11142681 | 11142312 | ID=cds.MS.gene061850.t1;Parent=MS.gene061850.t1 |
| chr7.4 | exon | 11142850 | 11143166 | 11142850 | ID=MS.gene061850.t1.exon4;Parent=MS.gene061850.t1 |
| chr7.4 | CDS | 11142850 | 11143166 | 11142850 | ID=cds.MS.gene061850.t1;Parent=MS.gene061850.t1 |
| chr7.4 | exon | 11143274 | 11143302 | 11143274 | ID=MS.gene061850.t1.exon5;Parent=MS.gene061850.t1 |
| chr7.4 | CDS | 11143274 | 11143302 | 11143274 | ID=cds.MS.gene061850.t1;Parent=MS.gene061850.t1 |
| Gene Sequence |
| Protein sequence |
