AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44144

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44144.t1 MTR_3g053920 56.647 346 84 3 1 346 1 280 6.66e-124 360
MS.gene44144.t1 MTR_2g061500 81.395 129 24 0 1 129 1 129 1.41e-74 229
MS.gene44144.t1 MTR_4g103530 79.381 97 20 0 55 151 1 97 5.97e-51 170
MS.gene44144.t1 MTR_4g103530 56.061 66 29 0 251 316 119 184 2.86e-16 77.0
MS.gene44144.t1 MTR_7g011710 52.800 125 54 2 55 179 1 120 5.84e-37 132
MS.gene44144.t1 MTR_0010s0370 36.517 178 101 4 8 177 4 177 7.00e-30 114
MS.gene44144.t1 MTR_0010s0350 36.517 178 101 4 8 177 4 177 7.00e-30 114
MS.gene44144.t1 MTR_6g033215 32.164 171 114 1 31 199 124 294 2.63e-28 113
MS.gene44144.t1 MTR_8g463110 56.198 121 50 2 289 408 1 119 4.10e-23 102
MS.gene44144.t1 MTR_1g036720 34.862 109 69 1 7 113 3 111 1.08e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44144.t1 AT2G17920 27.907 215 145 5 8 216 9 219 8.95e-17 80.9
MS.gene44144.t1 AT2G41590 29.861 144 93 3 77 216 80 219 1.26e-15 78.2
MS.gene44144.t1 AT5G36228 28.481 158 106 3 75 227 78 233 1.45e-15 78.2
MS.gene44144.t1 AT3G31430 28.646 192 125 5 30 215 126 311 3.49e-15 76.6
MS.gene44144.t1 AT2G13450 27.551 196 132 5 27 215 26 218 4.36e-14 73.9
MS.gene44144.t1 AT3G57587 24.631 203 146 4 77 277 80 277 6.39e-14 73.2
MS.gene44144.t1 AT5G18636 23.415 205 146 5 77 277 80 277 1.75e-13 71.6
MS.gene44144.t1 AT5G25200 26.389 144 98 3 77 216 80 219 3.52e-13 70.9
MS.gene44144.t1 AT2G02103 26.776 183 130 2 36 216 39 219 5.79e-13 70.5
MS.gene44144.t1 AT3G47920 27.465 142 99 2 77 216 9 148 3.43e-12 67.4

Find 121 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAAACCATATCGATTTC+TGG 0.153865 1.3:-59070068 MS.gene44144:CDS
CAGGCTCGGTTTCAAGATTA+AGG 0.191734 1.3:+59070358 None:intergenic
CAAGTCCATGGTTTGCCTTT+TGG 0.220706 1.3:-59070042 MS.gene44144:CDS
AGCATCCTGTCATTGAAATT+TGG 0.246745 1.3:+59069568 None:intergenic
AACCCGTTTGACTGGCTTCC+AGG 0.249150 1.3:+59070242 None:intergenic
CGACATACGCTCGCTGAAAT+AGG 0.271549 1.3:+59070269 None:intergenic
ATTTGCTGCTGAAGGGGAAT+TGG 0.281718 1.3:-59069254 MS.gene44144:CDS
TAGGCATTGATGTTAGTATT+GGG 0.301465 1.3:-59069219 MS.gene44144:CDS
CTGATGATGGTGTACGAAAC+TGG 0.316148 1.3:-59069747 MS.gene44144:CDS
CCCAGAAATCGATATGGTTT+AGG 0.321505 1.3:+59070067 None:intergenic
ACAAAGCTCGGGACGACGTC+GGG 0.323687 1.3:+59070093 None:intergenic
CCTTCAAACATCAACCTTGC+TGG 0.325007 1.3:-59070408 MS.gene44144:CDS
TCGAGAATGGCAGTGGGTTC+AGG 0.326911 1.3:+59070339 None:intergenic
TCCTAGACCTTGACCTACTT+TGG 0.328077 1.3:+59070008 None:intergenic
ACTTGTGGTGCTTGGCTTAC+CGG 0.340968 1.3:-59069386 MS.gene44144:CDS
CCTAGACCTTGACCTACTTT+GGG 0.343147 1.3:+59070009 None:intergenic
CCAGAAATCGATATGGTTTA+GGG 0.345457 1.3:+59070068 None:intergenic
CTTGTTTCAGTTCCATCATA+AGG 0.363309 1.3:-59070190 MS.gene44144:CDS
TCCAACCAACTTGTGGTGCT+TGG 0.382033 1.3:-59069394 MS.gene44144:CDS
ATTCTCGAAAACTGTTTGAT+TGG 0.382332 1.3:-59070324 MS.gene44144:CDS
TGATTGCAGTTATTTGAGTT+TGG 0.383927 1.3:+59069539 None:intergenic
GAATTGGGAAACAATGTAAT+AGG 0.387482 1.3:-59069238 MS.gene44144:CDS
TTACCTTGCGACATAGTTGC+AGG 0.387784 1.3:+59069652 None:intergenic
TCTCATGATGATACCGATAC+TGG 0.390725 1.3:-59069331 MS.gene44144:CDS
AATTGTGTTCCGGCCATCAT+AGG 0.392406 1.3:+59069963 None:intergenic
CTTGCACCCAGAAATCGATA+TGG 0.406053 1.3:+59070061 None:intergenic
TTTGCTGCTGAAGGGGAATT+GGG 0.409241 1.3:-59069253 MS.gene44144:CDS
GCTCGCTGAAATAGGCAAAC+TGG 0.409343 1.3:+59070277 None:intergenic
GCTTCCAATGCAACTGCTGC+AGG 0.410939 1.3:-59069604 MS.gene44144:CDS
GTGATCGTAACCCGTTTGAC+TGG 0.416613 1.3:+59070234 None:intergenic
GCGACATAGTTGCAGGAATA+GGG 0.417434 1.3:+59069659 None:intergenic
TGCGACATAGTTGCAGGAAT+AGG 0.423523 1.3:+59069658 None:intergenic
TGTCACAGGTGTGGGCTGAT+TGG 0.436701 1.3:-59069811 MS.gene44144:CDS
CCAGCAAGGTTGATGTTTGA+AGG 0.438339 1.3:+59070408 None:intergenic
CCTAAACCATATCGATTTCT+GGG 0.441473 1.3:-59070067 MS.gene44144:CDS
GCTGTCCCTACCACACATGC+TGG 0.442170 1.3:-59069364 MS.gene44144:CDS
ATAGGCATTGATGTTAGTAT+TGG 0.444192 1.3:-59069220 MS.gene44144:CDS
AGGCTCGGTTTCAAGATTAA+GGG 0.445673 1.3:+59070359 None:intergenic
CTGGTTCTGAATTGAAGAAA+AGG 0.450429 1.3:-59069312 MS.gene44144:CDS
GTGCCAACACGTTGAGCAGC+AGG 0.454461 1.3:+59069709 None:intergenic
AGGCACTATGAATTGTGTTC+CGG 0.463677 1.3:+59069953 None:intergenic
TGGTTTAGGGGCACAAAGCT+CGG 0.468910 1.3:+59070081 None:intergenic
GCGAGCGTATGTCGCGAGCC+TGG 0.475977 1.3:-59070260 MS.gene44144:CDS
GGTATAGGTACTGGTTTCTC+TGG 0.478677 1.3:-59069472 MS.gene44144:CDS
GGTTTAGGGGCACAAAGCTC+GGG 0.484462 1.3:+59070082 None:intergenic
ACAACCACGGACCTTCATCT+AGG 0.489467 1.3:+59070151 None:intergenic
AGCCTGGAAGCCAGTCAAAC+GGG 0.491071 1.3:-59070244 MS.gene44144:CDS
GATTTCTGGGTGCAAGTCCA+TGG 0.495937 1.3:-59070054 MS.gene44144:CDS
TCATACAGACAAGGTGTGTC+CGG 0.496709 1.3:-59069788 MS.gene44144:CDS
TTGGGTTGAATGAATCCAAA+AGG 0.497922 1.3:+59070027 None:intergenic
ATGAAACAAGGTATAGGTAC+TGG 0.504880 1.3:-59069481 MS.gene44144:CDS
GTTGATGTTTGAAGGATCCA+TGG 0.507987 1.3:+59070416 None:intergenic
GCATGTGTGGTAGGGACAGC+CGG 0.513664 1.3:+59069367 None:intergenic
GAGCCTGGAAGCCAGTCAAA+CGG 0.514466 1.3:-59070245 MS.gene44144:CDS
GGCACCTGCAGCAGTTGCAT+TGG 0.516522 1.3:+59069600 None:intergenic
GGATTCATTCAACCCAAAGT+AGG 0.516836 1.3:-59070021 MS.gene44144:CDS
CTGAATTGAAGAAAAGGAAA+CGG 0.519643 1.3:-59069306 MS.gene44144:CDS
GTGTCCGGAGCTGTATGAAT+TGG 0.521204 1.3:-59069773 MS.gene44144:CDS
CTTCAATTCAGAACCAGTAT+CGG 0.523702 1.3:+59069318 None:intergenic
AGGCATTGATGTTAGTATTG+GGG 0.524483 1.3:-59069218 MS.gene44144:CDS
CGACCTGCTGCTCAACGTGT+TGG 0.525821 1.3:-59069712 MS.gene44144:CDS
AATGGCAGTGGGTTCAGGCT+CGG 0.526571 1.3:+59070344 None:intergenic
ACCAACACATTTGCTGCTGA+AGG 0.529001 1.3:-59069262 MS.gene44144:CDS
AAGTTGGTTGGACAGCAAGC+TGG 0.529398 1.3:+59069405 None:intergenic
CTGTCCCTACCACACATGCT+GGG 0.531757 1.3:-59069363 MS.gene44144:CDS
TGGTTTAACTCTGTCTGAGG+AGG 0.532108 1.3:-59070388 MS.gene44144:CDS
CAACACATTTGCTGCTGAAG+GGG 0.533197 1.3:-59069260 MS.gene44144:CDS
TGATGATGGTGTACGAAACT+GGG 0.533607 1.3:-59069746 MS.gene44144:CDS
CTCCTAAGTCCTATGATGGC+CGG 0.535617 1.3:-59069972 MS.gene44144:CDS
TATGAATTGGACTCTGATGA+TGG 0.543306 1.3:-59069760 MS.gene44144:CDS
GAGTGGCATCCACCTTATGA+TGG 0.544576 1.3:+59070178 None:intergenic
GCCAAGCACCACAAGTTGGT+TGG 0.547641 1.3:+59069393 None:intergenic
CAAGGTCTAGGAAGTGTCCT+TGG 0.547875 1.3:-59069997 MS.gene44144:CDS
GGCATTGATGTTAGTATTGG+GGG 0.548557 1.3:-59069217 MS.gene44144:CDS
CTGTGCCAAATTTCAATGAC+AGG 0.551379 1.3:-59069573 MS.gene44144:CDS
TGATAACTTTCATATAGCAC+TGG 0.552206 1.3:-59070127 MS.gene44144:CDS
GCCACTCGTGTCCTAGATGA+AGG 0.553709 1.3:-59070162 MS.gene44144:CDS
GCACTGCTGCAACAAATCGT+TGG 0.554627 1.3:-59069690 MS.gene44144:CDS
CACAAAGCTCGGGACGACGT+CGG 0.562119 1.3:+59070092 None:intergenic
CTTGCTGTCCAACCAACTTG+TGG 0.563130 1.3:-59069401 MS.gene44144:CDS
CCCTTCAGCAGCAAATGTGT+TGG 0.563529 1.3:+59069261 None:intergenic
CCCAAAGTAGGTCAAGGTCT+AGG 0.565295 1.3:-59070009 MS.gene44144:CDS
GAGTCCAATTCATACAGCTC+CGG 0.566714 1.3:+59069769 None:intergenic
TCACACCCAGCATGTGTGGT+AGG 0.567245 1.3:+59069358 None:intergenic
TGCTGGTTTAACTCTGTCTG+AGG 0.573494 1.3:-59070391 MS.gene44144:CDS
CCAACACATTTGCTGCTGAA+GGG 0.580009 1.3:-59069261 MS.gene44144:CDS
GGTTTAACTCTGTCTGAGGA+GGG 0.582639 1.3:-59070387 MS.gene44144:CDS
ATGTGTTGGTAGCATTCTGA+AGG 0.584524 1.3:+59069275 None:intergenic
CACACCCAGCATGTGTGGTA+GGG 0.585474 1.3:+59069359 None:intergenic
GGTACTCCTAAGTCCTATGA+TGG 0.585551 1.3:-59069976 MS.gene44144:CDS
CAAAAGAGTCGTTGCTAGCA+CGG 0.586545 1.3:+59069872 None:intergenic
CAAGGTAACAATACTGCTAG+TGG 0.591921 1.3:-59069637 MS.gene44144:CDS
TTCATCACACCCAGCATGTG+TGG 0.595941 1.3:+59069354 None:intergenic
TTGATGTTTGAAGGATCCAT+GGG 0.597857 1.3:+59070417 None:intergenic
TTCCGGCCATCATAGGACTT+AGG 0.598914 1.3:+59069970 None:intergenic
GCATTGATGTTAGTATTGGG+GGG 0.602232 1.3:-59069216 MS.gene44144:CDS
GAATTGCATGTGGAGGAAGA+AGG 0.603344 1.3:+59069433 None:intergenic
GTTTCAGTTCCATCATAAGG+TGG 0.609100 1.3:-59070187 MS.gene44144:CDS
ATTCAACCCAAAGTAGGTCA+AGG 0.610510 1.3:-59070015 MS.gene44144:CDS
CACGTTGAGCAGCAGGTCGG+AGG 0.612061 1.3:+59069716 None:intergenic
ATTGAAATTTGGCACAGCAG+CGG 0.616691 1.3:+59069579 None:intergenic
TGAATCCAAAAGGCAAACCA+TGG 0.619002 1.3:+59070037 None:intergenic
ATTCCTGCAACTATGTCGCA+AGG 0.631537 1.3:-59069655 MS.gene44144:CDS
GGTAACAATACTGCTAGTGG+TGG 0.644999 1.3:-59069634 MS.gene44144:CDS
TGCCTACATGCGTATCAAAG+TGG 0.646742 1.3:-59069935 MS.gene44144:CDS
TTGGTTGGACAGCAAGCTGG+AGG 0.650434 1.3:+59069408 None:intergenic
GTAAGCCAAGCACCACAAGT+TGG 0.653915 1.3:+59069389 None:intergenic
GGAGGTCGAATTGCATGTGG+AGG 0.654577 1.3:+59069426 None:intergenic
GCTGGAGGTCGAATTGCATG+TGG 0.656858 1.3:+59069423 None:intergenic
CAGACAGAGTTAAACCAGCA+AGG 0.669821 1.3:+59070394 None:intergenic
TAACGGCACAGTAACATCAG+CGG 0.674059 1.3:+59069912 None:intergenic
GTGTCCTAGATGAAGGTCCG+TGG 0.675720 1.3:-59070155 MS.gene44144:CDS
CAGAAATCGATATGGTTTAG+GGG 0.682672 1.3:+59070069 None:intergenic
CAAAGCTCGGGACGACGTCG+GGG 0.683751 1.3:+59070094 None:intergenic
ACCTTCATCTAGGACACGAG+TGG 0.684214 1.3:+59070161 None:intergenic
GGCCACTTTGATACGCATGT+AGG 0.689340 1.3:+59069933 None:intergenic
CAACACGTTGAGCAGCAGGT+CGG 0.691694 1.3:+59069713 None:intergenic
CATAGGACTTAGGAGTACCA+AGG 0.706456 1.3:+59069980 None:intergenic
GATGATGGTGTACGAAACTG+GGG 0.710399 1.3:-59069745 MS.gene44144:CDS
GCTGATTGGTCATACAGACA+AGG 0.713586 1.3:-59069797 MS.gene44144:CDS
TGAAAGTTATCATACAACCA+CGG 0.735906 1.3:+59070138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ATTCTCGAAAACTGTTTGAT+TGG - chr1.3:59069300-59069319 MS.gene44144:CDS 30.0%
CTGAATTGAAGAAAAGGAAA+CGG - chr1.3:59070318-59070337 MS.gene44144:CDS 30.0%
GAATTGGGAAACAATGTAAT+AGG - chr1.3:59070386-59070405 MS.gene44144:CDS 30.0%
GCAAAAATGAAACAAGGTAT+AGG - chr1.3:59070137-59070156 MS.gene44144:CDS 30.0%
TGAAAGTTATCATACAACCA+CGG + chr1.3:59069489-59069508 None:intergenic 30.0%
TGATAACTTTCATATAGCAC+TGG - chr1.3:59069497-59069516 MS.gene44144:CDS 30.0%
! TGATTGCAGTTATTTGAGTT+TGG + chr1.3:59070088-59070107 None:intergenic 30.0%
!! AATCAAACAGTTTTCGAGAA+TGG + chr1.3:59069301-59069320 None:intergenic 30.0%
!! ATAGGCATTGATGTTAGTAT+TGG - chr1.3:59070404-59070423 MS.gene44144:CDS 30.0%
!! TAGGCATTGATGTTAGTATT+GGG - chr1.3:59070405-59070424 MS.gene44144:CDS 30.0%
!!! ACACGCCATTCTTTTTTTAA+CGG + chr1.3:59069732-59069751 None:intergenic 30.0%
ACCACTGCAAAAATGAAACA+AGG - chr1.3:59070131-59070150 MS.gene44144:CDS 35.0%
AGCATCCTGTCATTGAAATT+TGG + chr1.3:59070059-59070078 None:intergenic 35.0%
ATGAAACAAGGTATAGGTAC+TGG - chr1.3:59070143-59070162 MS.gene44144:CDS 35.0%
CAGAAATCGATATGGTTTAG+GGG + chr1.3:59069558-59069577 None:intergenic 35.0%
CCAGAAATCGATATGGTTTA+GGG + chr1.3:59069559-59069578 None:intergenic 35.0%
CTTCAATTCAGAACCAGTAT+CGG + chr1.3:59070309-59070328 None:intergenic 35.0%
CTTGTTTCAGTTCCATCATA+AGG - chr1.3:59069434-59069453 MS.gene44144:CDS 35.0%
TATGAATTGGACTCTGATGA+TGG - chr1.3:59069864-59069883 MS.gene44144:CDS 35.0%
! CTGTGCCGTTAAAAAAAGAA+TGG - chr1.3:59069724-59069743 MS.gene44144:CDS 35.0%
!! ACCTTGTTTCATTTTTGCAG+TGG + chr1.3:59070135-59070154 None:intergenic 35.0%
!! AGGCATTGATGTTAGTATTG+GGG - chr1.3:59070406-59070425 MS.gene44144:CDS 35.0%
!! CCTAAACCATATCGATTTCT+GGG - chr1.3:59069557-59069576 MS.gene44144:CDS 35.0%
!! CTGGTTCTGAATTGAAGAAA+AGG - chr1.3:59070312-59070331 MS.gene44144:CDS 35.0%
!! TTGGGTTGAATGAATCCAAA+AGG + chr1.3:59069600-59069619 None:intergenic 35.0%
!!! AATTGGGTGTTTTTTGTCAC+AGG - chr1.3:59069799-59069818 MS.gene44144:CDS 35.0%
AGGCACTATGAATTGTGTTC+CGG + chr1.3:59069674-59069693 None:intergenic 40.0%
ATTCAACCCAAAGTAGGTCA+AGG - chr1.3:59069609-59069628 MS.gene44144:CDS 40.0%
ATTGAAATTTGGCACAGCAG+CGG + chr1.3:59070048-59070067 None:intergenic 40.0%
CAAGGTAACAATACTGCTAG+TGG - chr1.3:59069987-59070006 MS.gene44144:CDS 40.0%
CCCAGAAATCGATATGGTTT+AGG + chr1.3:59069560-59069579 None:intergenic 40.0%
CTGTGCCAAATTTCAATGAC+AGG - chr1.3:59070051-59070070 MS.gene44144:CDS 40.0%
GGATTCATTCAACCCAAAGT+AGG - chr1.3:59069603-59069622 MS.gene44144:CDS 40.0%
GTTTCAGTTCCATCATAAGG+TGG - chr1.3:59069437-59069456 MS.gene44144:CDS 40.0%
TCTCATGATGATACCGATAC+TGG - chr1.3:59070293-59070312 MS.gene44144:CDS 40.0%
TGAATCCAAAAGGCAAACCA+TGG + chr1.3:59069590-59069609 None:intergenic 40.0%
! AGGCTCGGTTTCAAGATTAA+GGG + chr1.3:59069268-59069287 None:intergenic 40.0%
! GCATTGATGTTAGTATTGGG+GGG - chr1.3:59070408-59070427 MS.gene44144:CDS 40.0%
!! ATGTGTTGGTAGCATTCTGA+AGG + chr1.3:59070352-59070371 None:intergenic 40.0%
!! CCCTAAACCATATCGATTTC+TGG - chr1.3:59069556-59069575 MS.gene44144:CDS 40.0%
!! GGCATTGATGTTAGTATTGG+GGG - chr1.3:59070407-59070426 MS.gene44144:CDS 40.0%
!! GTTTCATTTTTGCAGTGGTC+TGG + chr1.3:59070130-59070149 None:intergenic 40.0%
!! TGATGATGGTGTACGAAACT+GGG - chr1.3:59069878-59069897 MS.gene44144:CDS 40.0%
!!! GTGTTTTTTGTCACAGGTGT+GGG - chr1.3:59069805-59069824 MS.gene44144:CDS 40.0%
AATTGTGTTCCGGCCATCAT+AGG + chr1.3:59069664-59069683 None:intergenic 45.0%
ATTCCTGCAACTATGTCGCA+AGG - chr1.3:59069969-59069988 MS.gene44144:CDS 45.0%
CAAAAGAGTCGTTGCTAGCA+CGG + chr1.3:59069755-59069774 None:intergenic 45.0%
CAGACAGAGTTAAACCAGCA+AGG + chr1.3:59069233-59069252 None:intergenic 45.0%
CCTAGACCTTGACCTACTTT+GGG + chr1.3:59069618-59069637 None:intergenic 45.0%
CCTTCAAACATCAACCTTGC+TGG - chr1.3:59069216-59069235 MS.gene44144:CDS 45.0%
CTTGCACCCAGAAATCGATA+TGG + chr1.3:59069566-59069585 None:intergenic 45.0%
GAATTGCATGTGGAGGAAGA+AGG + chr1.3:59070194-59070213 None:intergenic 45.0%
GAGTCCAATTCATACAGCTC+CGG + chr1.3:59069858-59069877 None:intergenic 45.0%
GCGACATAGTTGCAGGAATA+GGG + chr1.3:59069968-59069987 None:intergenic 45.0%
GGTAACAATACTGCTAGTGG+TGG - chr1.3:59069990-59070009 MS.gene44144:CDS 45.0%
GGTACTCCTAAGTCCTATGA+TGG - chr1.3:59069648-59069667 MS.gene44144:CDS 45.0%
GGTTTAACTCTGTCTGAGGA+GGG - chr1.3:59069237-59069256 MS.gene44144:CDS 45.0%
TAACGGCACAGTAACATCAG+CGG + chr1.3:59069715-59069734 None:intergenic 45.0%
TCATACAGACAAGGTGTGTC+CGG - chr1.3:59069836-59069855 MS.gene44144:CDS 45.0%
TCCTAGACCTTGACCTACTT+TGG + chr1.3:59069619-59069638 None:intergenic 45.0%
TGCCTACATGCGTATCAAAG+TGG - chr1.3:59069689-59069708 MS.gene44144:CDS 45.0%
TGCGACATAGTTGCAGGAAT+AGG + chr1.3:59069969-59069988 None:intergenic 45.0%
TGGTTTAACTCTGTCTGAGG+AGG - chr1.3:59069236-59069255 MS.gene44144:CDS 45.0%
TTACCTTGCGACATAGTTGC+AGG + chr1.3:59069975-59069994 None:intergenic 45.0%
TTTGCTGCTGAAGGGGAATT+GGG - chr1.3:59070371-59070390 MS.gene44144:CDS 45.0%
! ACCAACACATTTGCTGCTGA+AGG - chr1.3:59070362-59070381 MS.gene44144:CDS 45.0%
! ATTTGCTGCTGAAGGGGAAT+TGG - chr1.3:59070370-59070389 MS.gene44144:CDS 45.0%
! CAACACATTTGCTGCTGAAG+GGG - chr1.3:59070364-59070383 MS.gene44144:CDS 45.0%
! CAGGCTCGGTTTCAAGATTA+AGG + chr1.3:59069269-59069288 None:intergenic 45.0%
! CCAACACATTTGCTGCTGAA+GGG - chr1.3:59070363-59070382 MS.gene44144:CDS 45.0%
! GATGATGGTGTACGAAACTG+GGG - chr1.3:59069879-59069898 MS.gene44144:CDS 45.0%
! GCTGATTGGTCATACAGACA+AGG - chr1.3:59069827-59069846 MS.gene44144:CDS 45.0%
!! ACAGTTTTCGAGAATGGCAG+TGG + chr1.3:59069295-59069314 None:intergenic 45.0%
!! CAAGTCCATGGTTTGCCTTT+TGG - chr1.3:59069582-59069601 MS.gene44144:CDS 45.0%
!! CAGTTTTCGAGAATGGCAGT+GGG + chr1.3:59069294-59069313 None:intergenic 45.0%
!! CATAGGACTTAGGAGTACCA+AGG + chr1.3:59069647-59069666 None:intergenic 45.0%
!! CCAGCAAGGTTGATGTTTGA+AGG + chr1.3:59069219-59069238 None:intergenic 45.0%
!! CTGATGATGGTGTACGAAAC+TGG - chr1.3:59069877-59069896 MS.gene44144:CDS 45.0%
!! GGTATAGGTACTGGTTTCTC+TGG - chr1.3:59070152-59070171 MS.gene44144:CDS 45.0%
!! TGCTGGTTTAACTCTGTCTG+AGG - chr1.3:59069233-59069252 MS.gene44144:CDS 45.0%
!!! GGTGTTTTTTGTCACAGGTG+TGG - chr1.3:59069804-59069823 MS.gene44144:CDS 45.0%
!!! AATTTTAAATATGAAAAATT+GGG - chr1.3:59069783-59069802 MS.gene44144:CDS 5.0%
!!! TAATTTTAAATATGAAAAAT+TGG - chr1.3:59069782-59069801 MS.gene44144:CDS 5.0%
ACAACCACGGACCTTCATCT+AGG + chr1.3:59069476-59069495 None:intergenic 50.0%
ACTTGTGGTGCTTGGCTTAC+CGG - chr1.3:59070238-59070257 MS.gene44144:CDS 50.0%
CCCAAAGTAGGTCAAGGTCT+AGG - chr1.3:59069615-59069634 MS.gene44144:CDS 50.0%
CCCTTCAGCAGCAAATGTGT+TGG + chr1.3:59070366-59070385 None:intergenic 50.0%
CGACATACGCTCGCTGAAAT+AGG + chr1.3:59069358-59069377 None:intergenic 50.0%
CTCCTAAGTCCTATGATGGC+CGG - chr1.3:59069652-59069671 MS.gene44144:CDS 50.0%
GAGTGGCATCCACCTTATGA+TGG + chr1.3:59069449-59069468 None:intergenic 50.0%
GCACTGCTGCAACAAATCGT+TGG - chr1.3:59069934-59069953 MS.gene44144:CDS 50.0%
GCTCGCTGAAATAGGCAAAC+TGG + chr1.3:59069350-59069369 None:intergenic 50.0%
GTAAGCCAAGCACCACAAGT+TGG + chr1.3:59070238-59070257 None:intergenic 50.0%
GTGATCGTAACCCGTTTGAC+TGG + chr1.3:59069393-59069412 None:intergenic 50.0%
GTGTCCGGAGCTGTATGAAT+TGG - chr1.3:59069851-59069870 MS.gene44144:CDS 50.0%
TCCAACCAACTTGTGGTGCT+TGG - chr1.3:59070230-59070249 MS.gene44144:CDS 50.0%
TTCATCACACCCAGCATGTG+TGG + chr1.3:59070273-59070292 None:intergenic 50.0%
TTCCGGCCATCATAGGACTT+AGG + chr1.3:59069657-59069676 None:intergenic 50.0%
! AAGTTGGTTGGACAGCAAGC+TGG + chr1.3:59070222-59070241 None:intergenic 50.0%
! ACCTTCATCTAGGACACGAG+TGG + chr1.3:59069466-59069485 None:intergenic 50.0%
! CTTGCTGTCCAACCAACTTG+TGG - chr1.3:59070223-59070242 MS.gene44144:CDS 50.0%
! GATTTCTGGGTGCAAGTCCA+TGG - chr1.3:59069570-59069589 MS.gene44144:CDS 50.0%
! GGCCACTTTGATACGCATGT+AGG + chr1.3:59069694-59069713 None:intergenic 50.0%
! TGGTTTAGGGGCACAAAGCT+CGG + chr1.3:59069546-59069565 None:intergenic 50.0%
!! CAAGGTCTAGGAAGTGTCCT+TGG - chr1.3:59069627-59069646 MS.gene44144:CDS 50.0%
AGCCTGGAAGCCAGTCAAAC+GGG - chr1.3:59069380-59069399 MS.gene44144:CDS 55.0%
CAACACGTTGAGCAGCAGGT+CGG + chr1.3:59069914-59069933 None:intergenic 55.0%
CACACCCAGCATGTGTGGTA+GGG + chr1.3:59070268-59070287 None:intergenic 55.0%
CTGTCCCTACCACACATGCT+GGG - chr1.3:59070261-59070280 MS.gene44144:CDS 55.0%
GAGCCTGGAAGCCAGTCAAA+CGG - chr1.3:59069379-59069398 MS.gene44144:CDS 55.0%
GCCACTCGTGTCCTAGATGA+AGG - chr1.3:59069462-59069481 MS.gene44144:CDS 55.0%
GCTGGAGGTCGAATTGCATG+TGG + chr1.3:59070204-59070223 None:intergenic 55.0%
GCTTCCAATGCAACTGCTGC+AGG - chr1.3:59070020-59070039 MS.gene44144:CDS 55.0%
GGAGGTCGAATTGCATGTGG+AGG + chr1.3:59070201-59070220 None:intergenic 55.0%
GTGTCCTAGATGAAGGTCCG+TGG - chr1.3:59069469-59069488 MS.gene44144:CDS 55.0%
TCACACCCAGCATGTGTGGT+AGG + chr1.3:59070269-59070288 None:intergenic 55.0%
TTGGTTGGACAGCAAGCTGG+AGG + chr1.3:59070219-59070238 None:intergenic 55.0%
! AATGGCAGTGGGTTCAGGCT+CGG + chr1.3:59069283-59069302 None:intergenic 55.0%
! GGTTTAGGGGCACAAAGCTC+GGG + chr1.3:59069545-59069564 None:intergenic 55.0%
! TCGAGAATGGCAGTGGGTTC+AGG + chr1.3:59069288-59069307 None:intergenic 55.0%
! TGTCACAGGTGTGGGCTGAT+TGG - chr1.3:59069813-59069832 MS.gene44144:CDS 55.0%
!! AACCCGTTTGACTGGCTTCC+AGG + chr1.3:59069385-59069404 None:intergenic 55.0%
!! GCCAAGCACCACAAGTTGGT+TGG + chr1.3:59070234-59070253 None:intergenic 55.0%
ACAAAGCTCGGGACGACGTC+GGG + chr1.3:59069534-59069553 None:intergenic 60.0%
CACAAAGCTCGGGACGACGT+CGG + chr1.3:59069535-59069554 None:intergenic 60.0%
CGACCTGCTGCTCAACGTGT+TGG - chr1.3:59069912-59069931 MS.gene44144:CDS 60.0%
GCATGTGTGGTAGGGACAGC+CGG + chr1.3:59070260-59070279 None:intergenic 60.0%
GCTGTCCCTACCACACATGC+TGG - chr1.3:59070260-59070279 MS.gene44144:CDS 60.0%
GGCACCTGCAGCAGTTGCAT+TGG + chr1.3:59070027-59070046 None:intergenic 60.0%
GTGCCAACACGTTGAGCAGC+AGG + chr1.3:59069918-59069937 None:intergenic 60.0%
CAAAGCTCGGGACGACGTCG+GGG + chr1.3:59069533-59069552 None:intergenic 65.0%
CACGTTGAGCAGCAGGTCGG+AGG + chr1.3:59069911-59069930 None:intergenic 65.0%
GCGAGCGTATGTCGCGAGCC+TGG - chr1.3:59069364-59069383 MS.gene44144:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 59069210 59070436 59069210 ID=MS.gene44144
chr1.3 mRNA 59069210 59070436 59069210 ID=MS.gene44144.t1;Parent=MS.gene44144
chr1.3 exon 59069210 59070436 59069210 ID=MS.gene44144.t1.exon1;Parent=MS.gene44144.t1
chr1.3 CDS 59069210 59070436 59069210 ID=cds.MS.gene44144.t1;Parent=MS.gene44144.t1
Gene Sequence

>MS.gene44144

ATGGATCCTTCAAACATCAACCTTGCTGGTTTAACTCTGTCTGAGGAGGGTCTAACCCTTAATCTTGAAACCGAGCCTGAACCCACTGCCATTCTCGAAAACTGTTTGATTGGTCGTGTTCTCGCTGATCGTGAAATCCAGTTTGCCTATTTCAGCGAGCGTATGTCGCGAGCCTGGAAGCCAGTCAAACGGGTTACGATCACGAAATCTGTTGCAGATCGTTTCTTGTTTCAGTTCCATCATAAGGTGGATGCCACTCGTGTCCTAGATGAAGGTCCGTGGTTGTATGATAACTTTCATATAGCACTGGATCGTATTAACCCCGACGTCGTCCCGAGCTTTGTGCCCCTAAACCATATCGATTTCTGGGTGCAAGTCCATGGTTTGCCTTTTGGATTCATTCAACCCAAAGTAGGTCAAGGTCTAGGAAGTGTCCTTGGTACTCCTAAGTCCTATGATGGCCGGAACACAATTCATAGTGCCTACATGCGTATCAAAGTGGCCGCTGATGTTACTGTGCCGTTAAAAAAAGAATGGCGTGTCCGTGCTAGCAACGACTCTTTTGTGACTGTTAATTTTAAATATGAAAAATTGGGTGTTTTTTGTCACAGGTGTGGGCTGATTGGTCATACAGACAAGGTGTGTCCGGAGCTGTATGAATTGGACTCTGATGATGGTGTACGAAACTGGGGAGTTTACCTCCGACCTGCTGCTCAACGTGTTGGCACTGCTGCAACAAATCGTTGGCTTCAAGACCCTATTCCTGCAACTATGTCGCAAGGTAACAATACTGCTAGTGGTGGATTCGATGCTTCCAATGCAACTGCTGCAGGTGCCGCTGCTGTGCCAAATTTCAATGACAGGATGCTTGCTGTCCAAACTCAAATAACTGCAATCAAGCATGACATGCTCGCTGTCCAGACCACTGCAAAAATGAAACAAGGTATAGGTACTGGTTTCTCTGGTAAACTGCACTATCTGCCTTCTTCCTCCACATGCAATTCGACCTCCAGCTTGCTGTCCAACCAACTTGTGGTGCTTGGCTTACCGGCTGTCCCTACCACACATGCTGGGTGTGATGAATCTCATGATGATACCGATACTGGTTCTGAATTGAAGAAAAGGAAACGGATGTTGAACCTTCAGAATGCTACCAACACATTTGCTGCTGAAGGGGAATTGGGAAACAATGTAATAGGCATTGATGTTAGTATTGGGGGGATGTAG
Protein sequence

>MS.gene44144.t1

MDPSNINLAGLTLSEEGLTLNLETEPEPTAILENCLIGRVLADREIQFAYFSERMSRAWKPVKRVTITKSVADRFLFQFHHKVDATRVLDEGPWLYDNFHIALDRINPDVVPSFVPLNHIDFWVQVHGLPFGFIQPKVGQGLGSVLGTPKSYDGRNTIHSAYMRIKVAADVTVPLKKEWRVRASNDSFVTVNFKYEKLGVFCHRCGLIGHTDKVCPELYELDSDDGVRNWGVYLRPAAQRVGTAATNRWLQDPIPATMSQGNNTASGGFDASNATAAGAAAVPNFNDRMLAVQTQITAIKHDMLAVQTTAKMKQGIGTGFSGKLHYLPSSSTCNSTSSLLSNQLVVLGLPAVPTTHAGCDESHDDTDTGSELKKRKRMLNLQNATNTFAAEGELGNNVIGIDVSIGGM