Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048747.t1 | AES70414.1 | 55.6 | 286 | 97 | 5 | 1 | 262 | 1 | 280 | 6.50E-72 | 281.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048747.t1 | G7J017 | 55.6 | 286 | 97 | 5 | 1 | 262 | 1 | 280 | 4.7e-72 | 281.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048747.t1 | MTR_3g053920 | 55.594 | 286 | 97 | 5 | 1 | 262 | 1 | 280 | 1.45e-92 | 278 |
| MS.gene048747.t1 | MTR_4g103530 | 62.637 | 182 | 63 | 1 | 55 | 231 | 1 | 182 | 4.23e-78 | 238 |
| MS.gene048747.t1 | MTR_2g061500 | 74.419 | 129 | 33 | 0 | 1 | 129 | 1 | 129 | 4.22e-69 | 213 |
| MS.gene048747.t1 | MTR_7g011710 | 72.941 | 85 | 23 | 0 | 55 | 139 | 1 | 85 | 6.00e-41 | 141 |
| MS.gene048747.t1 | MTR_8g463110 | 58.462 | 130 | 41 | 4 | 206 | 331 | 1 | 121 | 2.45e-25 | 107 |
| MS.gene048747.t1 | MTR_6g033215 | 34.965 | 143 | 88 | 2 | 5 | 147 | 103 | 240 | 7.73e-25 | 102 |
| MS.gene048747.t1 | MTR_0010s0370 | 34.266 | 143 | 90 | 4 | 8 | 147 | 4 | 145 | 9.85e-21 | 88.6 |
| MS.gene048747.t1 | MTR_0010s0350 | 34.266 | 143 | 90 | 4 | 8 | 147 | 4 | 145 | 9.85e-21 | 88.6 |
| MS.gene048747.t1 | MTR_1g036720 | 33.673 | 98 | 63 | 1 | 11 | 106 | 7 | 104 | 6.58e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 121 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGCTGCTGATGGGGTTA+TGG | 0.189953 | 3.4:-66827993 | MS.gene048747:CDS |
| GTTCCTGGTTGGAACAAATT+TGG | 0.216776 | 3.4:+66828385 | None:intergenic |
| CTGCTTGATCGGTCGTGTTT+TGG | 0.246456 | 3.4:-66829398 | MS.gene048747:CDS |
| CATTGAATCACCTGGACATT+TGG | 0.249024 | 3.4:-66829153 | MS.gene048747:CDS |
| CATCAAGTTTGTGGTGAAAC+TGG | 0.304253 | 3.4:+66829269 | None:intergenic |
| CAGGTCCACGGTTTGCCCTT+TGG | 0.316867 | 3.4:-66829127 | MS.gene048747:CDS |
| TTTGCTGCTGATGGGGTTAT+GGG | 0.324260 | 3.4:-66827992 | MS.gene048747:CDS |
| ATTTCTTCCTTTGCTGCTGA+TGG | 0.329831 | 3.4:-66828001 | MS.gene048747:CDS |
| GCTTGCCTGGTTTCCATGCT+CGG | 0.336051 | 3.4:+66829332 | None:intergenic |
| CAATGTCGGCAGCTAGGTTA+AGG | 0.345236 | 3.4:+66829443 | None:intergenic |
| TGCTATTCTTGCTATTAAAC+AGG | 0.348713 | 3.4:-66828284 | MS.gene048747:CDS |
| CAAGGAATTGGCAGTTTCCT+TGG | 0.351997 | 3.4:-66829082 | MS.gene048747:intron |
| ATTGAATCACCTGGACATTT+GGG | 0.353010 | 3.4:-66829152 | MS.gene048747:CDS |
| CCAATTCCTTGACCAACCTT+TGG | 0.354457 | 3.4:+66829094 | None:intergenic |
| CCAAAGGTTGGTCAAGGAAT+TGG | 0.363573 | 3.4:-66829094 | MS.gene048747:CDS |
| TTTCTTCCTTTGCTGCTGAT+GGG | 0.379088 | 3.4:-66828000 | MS.gene048747:CDS |
| TGTTACAGGTGTGGCATTCT+CGG | 0.390750 | 3.4:-66828562 | MS.gene048747:intron |
| CAGGGCCGCTCCATGGTGCT+TGG | 0.402233 | 3.4:-66828148 | MS.gene048747:CDS |
| GTTATGGGAAATGATGTAAT+AGG | 0.406704 | 3.4:-66827977 | MS.gene048747:CDS |
| CCCACGAACCTTAACATTGA+TGG | 0.418920 | 3.4:-66829493 | MS.gene048747:CDS |
| AAACAGAGTATGGCAGGTTC+AGG | 0.419007 | 3.4:-66828229 | MS.gene048747:CDS |
| AACACTGCTGCTGTTCCTGC+AGG | 0.428988 | 3.4:-66828349 | MS.gene048747:CDS |
| TGACAACTTTCATATAGTTA+TGG | 0.430441 | 3.4:-66829212 | MS.gene048747:CDS |
| GTGTCCGGAGCTGTTCGAAC+TGG | 0.431938 | 3.4:-66828524 | MS.gene048747:CDS |
| GACCGATCAAGCAGTGTTCA+AGG | 0.432003 | 3.4:+66829407 | None:intergenic |
| ACTATTCCGTTCACTGCTGC+TGG | 0.435757 | 3.4:-66828118 | MS.gene048747:CDS |
| TTACGGCCAGCAGAGGTTCC+TGG | 0.439169 | 3.4:+66828370 | None:intergenic |
| GCCTCTTTCTCTCCAAGTGA+TGG | 0.439852 | 3.4:-66828094 | MS.gene048747:CDS |
| GCGGCCCTGCATCAGATTAG+AGG | 0.443977 | 3.4:+66828162 | None:intergenic |
| TTCCAACCAGGAACCTCTGC+TGG | 0.444799 | 3.4:-66828376 | MS.gene048747:CDS |
| GGTACAAACTAAACAGAGTA+TGG | 0.450993 | 3.4:-66828239 | MS.gene048747:CDS |
| CTCGACCTCTAATCTGATGC+AGG | 0.451492 | 3.4:-66828167 | MS.gene048747:CDS |
| GTGTGGCATTCTCGGTCATT+CGG | 0.451796 | 3.4:-66828554 | MS.gene048747:CDS |
| TGATTCATCATACATAGGAT+TGG | 0.459543 | 3.4:+66827911 | None:intergenic |
| CTTGCCTGGTTTCCATGCTC+GGG | 0.461634 | 3.4:+66829333 | None:intergenic |
| GCAGCAGTGAACGGAATAGT+AGG | 0.464351 | 3.4:+66828121 | None:intergenic |
| CACGAGCAACATCAAGTTTG+TGG | 0.464404 | 3.4:+66829260 | None:intergenic |
| ACCATCAATGTTAAGGTTCG+TGG | 0.472453 | 3.4:+66829492 | None:intergenic |
| ATCCTTGAACACTGCTTGAT+CGG | 0.474216 | 3.4:-66829409 | MS.gene048747:CDS |
| GGGTAAGACCATCAATGTTA+AGG | 0.477421 | 3.4:+66829485 | None:intergenic |
| GACATTTGGGTGCAGGTCCA+CGG | 0.479487 | 3.4:-66829139 | MS.gene048747:CDS |
| ATGATTGTCACACGCTTGCC+TGG | 0.479590 | 3.4:+66829319 | None:intergenic |
| GGGTCAAACCCTCATCAGCC+AGG | 0.480642 | 3.4:+66829464 | None:intergenic |
| CAGGAACAGCAGCAGTGTTA+CGG | 0.482369 | 3.4:+66828353 | None:intergenic |
| TTCTCTCCAAGTGATGGGAA+TGG | 0.482921 | 3.4:-66828088 | MS.gene048747:CDS |
| ACATTTGATTCATCATACAT+AGG | 0.485391 | 3.4:+66827906 | None:intergenic |
| TTCTTCCTTTGCTGCTGATG+GGG | 0.487880 | 3.4:-66827999 | MS.gene048747:CDS |
| TTTGGACTCGGCATAGCATC+AGG | 0.490313 | 3.4:+66828403 | None:intergenic |
| CAAATGTCCAGGTGATTCAA+TGG | 0.494410 | 3.4:+66829154 | None:intergenic |
| TCATTCGGACAAGGTGTGTC+CGG | 0.496311 | 3.4:-66828539 | MS.gene048747:CDS |
| GAGGTCGAGGCACCTGAAGA+TGG | 0.496446 | 3.4:+66828181 | None:intergenic |
| AATGTCGGCAGCTAGGTTAA+GGG | 0.497192 | 3.4:+66829444 | None:intergenic |
| CTCGGCATAGCATCAGGTAT+AGG | 0.498593 | 3.4:+66828409 | None:intergenic |
| CTTTGGATTCATTCAACCAA+AGG | 0.499724 | 3.4:-66829110 | MS.gene048747:CDS |
| TGGTCTTACCCTGGCTGATG+AGG | 0.501493 | 3.4:-66829473 | MS.gene048747:CDS |
| CACTGTTCCATTGAATCACC+TGG | 0.504618 | 3.4:-66829161 | MS.gene048747:CDS |
| TCTGATGCAGGGCCGCTCCA+TGG | 0.506005 | 3.4:-66828155 | MS.gene048747:CDS |
| GTTAAGGTTCGTGGGATCCA+TGG | 0.509655 | 3.4:+66829501 | None:intergenic |
| AGCGGCTTTGATTTCTCGAT+CGG | 0.509809 | 3.4:+66829375 | None:intergenic |
| CCCATCACTTGGAGAGAAAG+AGG | 0.513257 | 3.4:+66828093 | None:intergenic |
| CCTCTTTCTCTCCAAGTGAT+GGG | 0.513383 | 3.4:-66828093 | MS.gene048747:CDS |
| AGGTCGAGGCACCTGAAGAT+GGG | 0.513438 | 3.4:+66828182 | None:intergenic |
| TTAAATCCATTCCCATCACT+TGG | 0.516983 | 3.4:+66828082 | None:intergenic |
| TCACCTGGACATTTGGGTGC+AGG | 0.517621 | 3.4:-66829146 | MS.gene048747:CDS |
| GTGTGTTGGACGAGGGTCCA+TGG | 0.521077 | 3.4:-66829240 | MS.gene048747:CDS |
| TGTTGCTCGTGTGTTGGACG+AGG | 0.522450 | 3.4:-66829248 | MS.gene048747:CDS |
| GGATTCATTCAACCAAAGGT+TGG | 0.527032 | 3.4:-66829106 | MS.gene048747:CDS |
| GGTCTTACCCTGGCTGATGA+GGG | 0.530738 | 3.4:-66829472 | MS.gene048747:CDS |
| ATTTAATGATGATGCTGGTT+CGG | 0.531645 | 3.4:-66828065 | MS.gene048747:CDS |
| AGGAAGAAATTCCATTCTGA+AGG | 0.535299 | 3.4:+66828014 | None:intergenic |
| GGACCTGCACCCAAATGTCC+AGG | 0.535494 | 3.4:+66829143 | None:intergenic |
| GAGTCCAGTTCGAACAGCTC+CGG | 0.535698 | 3.4:+66828520 | None:intergenic |
| ATAGGATCTGATGTTAGTGC+TGG | 0.539886 | 3.4:-66827959 | MS.gene048747:CDS |
| ATGTCCCGAGCATGGAAACC+AGG | 0.539941 | 3.4:-66829337 | MS.gene048747:CDS |
| GGTTGGAACAAATTTGGACT+CGG | 0.545594 | 3.4:+66828391 | None:intergenic |
| TTCGAACTGGACTCTGATGA+TGG | 0.548007 | 3.4:-66828511 | MS.gene048747:intron |
| TAGGATCTGATGTTAGTGCT+GGG | 0.549834 | 3.4:-66827958 | MS.gene048747:CDS |
| AAATTGTGTAAATTCCCTGC+AGG | 0.550807 | 3.4:+66828334 | None:intergenic |
| AATGGATTTAATGATGATGC+TGG | 0.552999 | 3.4:-66828070 | MS.gene048747:CDS |
| GATCAAGCAGTGTTCAAGGA+TGG | 0.553362 | 3.4:+66829411 | None:intergenic |
| CATAACCCCATCAGCAGCAA+AGG | 0.553704 | 3.4:+66827994 | None:intergenic |
| ATTCAACCAAAGGTTGGTCA+AGG | 0.554054 | 3.4:-66829100 | MS.gene048747:CDS |
| GTTATGGAACGTATTGCTCC+TGG | 0.556965 | 3.4:-66829196 | MS.gene048747:CDS |
| TTTGGTTGAATGAATCCAAA+GGG | 0.557289 | 3.4:+66829112 | None:intergenic |
| CAAACTAAACAGAGTATGGC+AGG | 0.559540 | 3.4:-66828235 | MS.gene048747:CDS |
| ATCAAGCAGTGTTCAAGGAT+GGG | 0.561405 | 3.4:+66829412 | None:intergenic |
| CATTCTCGGTCATTCGGACA+AGG | 0.565279 | 3.4:-66828548 | MS.gene048747:CDS |
| ACTTGATGTTGCTCGTGTGT+TGG | 0.565320 | 3.4:-66829254 | MS.gene048747:CDS |
| GAGGCACCAGCAGCAGTGAA+CGG | 0.566847 | 3.4:+66828112 | None:intergenic |
| AGGACTCAATGTCGGCAGCT+AGG | 0.567310 | 3.4:+66829437 | None:intergenic |
| GGATCTGATGTTAGTGCTGG+GGG | 0.568862 | 3.4:-66827956 | MS.gene048747:CDS |
| CTGCATCAGATTAGAGGTCG+AGG | 0.578654 | 3.4:+66828168 | None:intergenic |
| CCATCAATGTTAAGGTTCGT+GGG | 0.580051 | 3.4:+66829493 | None:intergenic |
| ACAGTGGTCGAGACAACACC+AGG | 0.584103 | 3.4:+66829178 | None:intergenic |
| GTATGATGAATCAAATGTAA+TGG | 0.590945 | 3.4:-66827901 | None:intergenic |
| CTTTGGTTGAATGAATCCAA+AGG | 0.593606 | 3.4:+66829111 | None:intergenic |
| GTGAACGCATGTCCCGAGCA+TGG | 0.594541 | 3.4:-66829345 | MS.gene048747:CDS |
| TGTGTGCTTGCCCTTCAGAA+TGG | 0.596198 | 3.4:-66828025 | MS.gene048747:CDS |
| AGCAGTGTTACGGCCAGCAG+AGG | 0.596556 | 3.4:+66828363 | None:intergenic |
| TGTCCTCGCTGCTCAGACTG+CGG | 0.600118 | 3.4:-66828260 | MS.gene048747:CDS |
| GGCCAGCAGAGGTTCCTGGT+TGG | 0.612892 | 3.4:+66828374 | None:intergenic |
| AGTCCAAATTTGTTCCAACC+AGG | 0.613010 | 3.4:-66828388 | MS.gene048747:CDS |
| GGAAGAAATTCCATTCTGAA+GGG | 0.616039 | 3.4:+66828015 | None:intergenic |
| TGAAAGTTGTCATATAGCCA+TGG | 0.616309 | 3.4:+66829223 | None:intergenic |
| GGTCAAACCCTCATCAGCCA+GGG | 0.622364 | 3.4:+66829465 | None:intergenic |
| TAACATTGATGGTCTTACCC+TGG | 0.623982 | 3.4:-66829482 | MS.gene048747:CDS |
| GGTCGAGGCACCTGAAGATG+GGG | 0.627505 | 3.4:+66828183 | None:intergenic |
| AGGATCTGATGTTAGTGCTG+GGG | 0.628172 | 3.4:-66827957 | MS.gene048747:CDS |
| TCGACCTCTAATCTGATGCA+GGG | 0.635425 | 3.4:-66828166 | MS.gene048747:CDS |
| ACACTGCTGCTGTTCCTGCA+GGG | 0.635731 | 3.4:-66828348 | MS.gene048747:CDS |
| GCAGTCCAAGCACCATGGAG+CGG | 0.635818 | 3.4:+66828143 | None:intergenic |
| GATGGGAGAGGACTCAATGT+CGG | 0.638132 | 3.4:+66829429 | None:intergenic |
| GAGGCACCTGAAGATGGGGA+TGG | 0.642298 | 3.4:+66828187 | None:intergenic |
| AGTAGGCAGTCCAAGCACCA+TGG | 0.649107 | 3.4:+66828138 | None:intergenic |
| GTTGCTCGTGTGTTGGACGA+GGG | 0.650160 | 3.4:-66829247 | MS.gene048747:CDS |
| CATGCGTTCACTGAAGTAAG+CGG | 0.663600 | 3.4:+66829357 | None:intergenic |
| GCAGTGTTCAAGGATGGGAG+AGG | 0.664768 | 3.4:+66829417 | None:intergenic |
| TGAATCCAAAGGGCAAACCG+TGG | 0.676765 | 3.4:+66829122 | None:intergenic |
| CAGGTGATTCAATGGAACAG+TGG | 0.687191 | 3.4:+66829162 | None:intergenic |
| GATCTGATGTTAGTGCTGGG+GGG | 0.722705 | 3.4:-66827955 | MS.gene048747:CDS |
| GTACCGCAGTCTGAGCAGCG+AGG | 0.775384 | 3.4:+66828257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTCATATTTAAACAAAAC+AGG | + | chr3.4:66828808-66828827 | None:intergenic | 20.0% |
| !! | TTGTTTAAATATGAGAATCT+TGG | - | chr3.4:66828811-66828830 | MS.gene048747:intron | 20.0% |
| !!! | AAATTGTAGTTTTCAAAGTT+AGG | - | chr3.4:66828667-66828686 | MS.gene048747:intron | 20.0% |
| !!! | AAATTGTAGTTTTCAAAGTT+AGG | + | chr3.4:66828686-66828667 | None:intergenic | 20.0% |
| !!! | AACTTTGAAAACTACAATTT+TGG | - | chr3.4:66828474-66828493 | MS.gene048747:intron | 20.0% |
| !!! | AACTTTGAAAACTACAATTT+TGG | + | chr3.4:66828493-66828474 | None:intergenic | 20.0% |
| !!! | AATTGTAGTTTTCAAAGTTA+GGG | - | chr3.4:66828668-66828687 | MS.gene048747:intron | 20.0% |
| !!! | AATTGTAGTTTTCAAAGTTA+GGG | + | chr3.4:66828687-66828668 | None:intergenic | 20.0% |
| ! | ACATTTGATTCATCATACAT+AGG | + | chr3.4:66829500-66829519 | None:intergenic | 25.0% |
| ! | TGACAACTTTCATATAGTTA+TGG | - | chr3.4:66828191-66828210 | MS.gene048747:CDS | 25.0% |
| !! | ATTGTAGTTTTCAAAGTTAG+GGG | - | chr3.4:66828669-66828688 | MS.gene048747:intron | 25.0% |
| !! | ATTGTAGTTTTCAAAGTTAG+GGG | + | chr3.4:66828688-66828669 | None:intergenic | 25.0% |
| !!! | CAACATTTTGAAAAGATAAG+GGG | + | chr3.4:66828562-66828581 | None:intergenic | 25.0% |
| !!! | GCAACATTTTGAAAAGATAA+GGG | + | chr3.4:66828563-66828582 | None:intergenic | 25.0% |
| ACATATTTCCCTTAATGTAG+GGG | + | chr3.4:66828532-66828551 | None:intergenic | 30.0% | |
| AGACATATTTCCCTTAATGT+AGG | + | chr3.4:66828534-66828553 | None:intergenic | 30.0% | |
| GACATATTTCCCTTAATGTA+GGG | + | chr3.4:66828533-66828552 | None:intergenic | 30.0% | |
| GTTATGGGAAATGATGTAAT+AGG | - | chr3.4:66829426-66829445 | MS.gene048747:CDS | 30.0% | |
| TGATTCATCATACATAGGAT+TGG | + | chr3.4:66829495-66829514 | None:intergenic | 30.0% | |
| TTTGGTTGAATGAATCCAAA+GGG | + | chr3.4:66828294-66828313 | None:intergenic | 30.0% | |
| ! | AATGGATTTAATGATGATGC+TGG | - | chr3.4:66829333-66829352 | MS.gene048747:CDS | 30.0% |
| ! | ATTTAATGATGATGCTGGTT+CGG | - | chr3.4:66829338-66829357 | MS.gene048747:CDS | 30.0% |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | - | chr3.4:66828445-66828464 | MS.gene048747:intron | 30.0% |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | + | chr3.4:66828464-66828445 | None:intergenic | 30.0% |
| ! | TCTTTTAACCCCTACATTAA+GGG | - | chr3.4:66828521-66828540 | MS.gene048747:CDS | 30.0% |
| ! | TTGTAGTTTTCAAAGTTAGG+GGG | - | chr3.4:66828670-66828689 | MS.gene048747:intron | 30.0% |
| ! | TTGTAGTTTTCAAAGTTAGG+GGG | + | chr3.4:66828689-66828670 | None:intergenic | 30.0% |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | + | chr3.4:66828717-66828698 | None:intergenic | 30.0% |
| !! | CAATTTTAATGATCGTATGC+TGG | - | chr3.4:66829086-66829105 | MS.gene048747:CDS | 30.0% |
| !! | CGCAACATTTTGAAAAGATA+AGG | + | chr3.4:66828564-66828583 | None:intergenic | 30.0% |
| !! | CGCAACTTTTTGAAAGATAA+GGG | - | chr3.4:66828700-66828719 | MS.gene048747:intron | 30.0% |
| !! | GCAACTTTTTGAAAGATAAG+GGG | - | chr3.4:66828701-66828720 | MS.gene048747:intron | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+AGG | - | chr3.4:66828699-66828718 | MS.gene048747:intron | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+GGG | + | chr3.4:66828718-66828699 | None:intergenic | 30.0% |
| !! | TGCTATTCTTGCTATTAAAC+AGG | - | chr3.4:66829119-66829138 | MS.gene048747:CDS | 30.0% |
| !!! | ATCTTGGTGTTTTTTGTTAC+AGG | - | chr3.4:66828827-66828846 | MS.gene048747:intron | 30.0% |
| AAATTGTGTAAATTCCCTGC+AGG | + | chr3.4:66829072-66829091 | None:intergenic | 35.0% | |
| AGAGCATATTTCCTTGAACA+TGG | + | chr3.4:66828504-66828523 | None:intergenic | 35.0% | |
| AGCATATTTCCTTGAACATG+GGG | + | chr3.4:66828502-66828521 | None:intergenic | 35.0% | |
| AGGAACTGTGAATGGTATTA+CGG | + | chr3.4:66828368-66828387 | None:intergenic | 35.0% | |
| AGGAAGAAATTCCATTCTGA+AGG | + | chr3.4:66829392-66829411 | None:intergenic | 35.0% | |
| ATTGAATCACCTGGACATTT+GGG | - | chr3.4:66828251-66828270 | MS.gene048747:CDS | 35.0% | |
| CTTTGGATTCATTCAACCAA+AGG | - | chr3.4:66828293-66828312 | MS.gene048747:CDS | 35.0% | |
| CTTTGGTTGAATGAATCCAA+AGG | + | chr3.4:66828295-66828314 | None:intergenic | 35.0% | |
| GAGCATATTTCCTTGAACAT+GGG | + | chr3.4:66828503-66828522 | None:intergenic | 35.0% | |
| GGAAGAAATTCCATTCTGAA+GGG | + | chr3.4:66829391-66829410 | None:intergenic | 35.0% | |
| GGTACAAACTAAACAGAGTA+TGG | - | chr3.4:66829164-66829183 | MS.gene048747:CDS | 35.0% | |
| TCAAAGTGAGGATTGATGTT+AGG | - | chr3.4:66828397-66828416 | MS.gene048747:CDS | 35.0% | |
| TGAAAGTTGTCATATAGCCA+TGG | + | chr3.4:66828183-66828202 | None:intergenic | 35.0% | |
| TGTTACTGTACCACTGAAAA+AGG | - | chr3.4:66828747-66828766 | MS.gene048747:intron | 35.0% | |
| TTAAATCCATTCCCATCACT+TGG | + | chr3.4:66829324-66829343 | None:intergenic | 35.0% | |
| ! | AACTTTGAAAACTGCTGAGA+AGG | + | chr3.4:66828638-66828657 | None:intergenic | 35.0% |
| ! | CTCAGCAGTTTTCAAAGTTA+GGG | - | chr3.4:66828639-66828658 | MS.gene048747:intron | 35.0% |
| ! | CTCTTTTAACCCCTACATTA+AGG | - | chr3.4:66828520-66828539 | MS.gene048747:CDS | 35.0% |
| ! | GACCCCTTATCTTTTCAAAA+TGG | - | chr3.4:66828557-66828576 | MS.gene048747:CDS | 35.0% |
| ! | TAGAAACAGGTTTAAGGTCA+GGG | + | chr3.4:66828933-66828952 | None:intergenic | 35.0% |
| ! | TCAGCAGTTTTCAAAGTTAG+GGG | - | chr3.4:66828640-66828659 | MS.gene048747:intron | 35.0% |
| ! | TCTCAGCAGTTTTCAAAGTT+AGG | - | chr3.4:66828638-66828657 | MS.gene048747:intron | 35.0% |
| !! | ATCCTACAACCACTTGTTAT+TGG | + | chr3.4:66828974-66828993 | None:intergenic | 35.0% |
| !! | CGCAACTTTTTGAAAGATAG+GGG | + | chr3.4:66828441-66828460 | None:intergenic | 35.0% |
| !! | GCAACTTTTTGAAAGATAGG+GGG | + | chr3.4:66828440-66828459 | None:intergenic | 35.0% |
| !! | GGCCATTTTGAAAAGATAAG+GGG | + | chr3.4:66828594-66828613 | None:intergenic | 35.0% |
| !! | GGGCCATTTTGAAAAGATAA+GGG | + | chr3.4:66828595-66828614 | None:intergenic | 35.0% |
| !!! | TTCAAAATGGCCCCTTTTTT+TGG | - | chr3.4:66828602-66828621 | MS.gene048747:intron | 35.0% |
| ACCATCAATGTTAAGGTTCG+TGG | + | chr3.4:66827914-66827933 | None:intergenic | 40.0% | |
| ATAGGATCTGATGTTAGTGC+TGG | - | chr3.4:66829444-66829463 | MS.gene048747:CDS | 40.0% | |
| ATCAAGCAGTGTTCAAGGAT+GGG | + | chr3.4:66827994-66828013 | None:intergenic | 40.0% | |
| ATCCTTGAACACTGCTTGAT+CGG | - | chr3.4:66827994-66828013 | MS.gene048747:CDS | 40.0% | |
| ATTTCTTCCTTTGCTGCTGA+TGG | - | chr3.4:66829402-66829421 | MS.gene048747:CDS | 40.0% | |
| CAAACTAAACAGAGTATGGC+AGG | - | chr3.4:66829168-66829187 | MS.gene048747:CDS | 40.0% | |
| CAAATGTCCAGGTGATTCAA+TGG | + | chr3.4:66828252-66828271 | None:intergenic | 40.0% | |
| CATATTTCCTTGAACATGGG+GGG | + | chr3.4:66828500-66828519 | None:intergenic | 40.0% | |
| CATCAAGTTTGTGGTGAAAC+TGG | + | chr3.4:66828137-66828156 | None:intergenic | 40.0% | |
| CATTGAATCACCTGGACATT+TGG | - | chr3.4:66828250-66828269 | MS.gene048747:CDS | 40.0% | |
| CCATCAATGTTAAGGTTCGT+GGG | + | chr3.4:66827913-66827932 | None:intergenic | 40.0% | |
| CGTAAGAACCATTGTTAGCA+CGG | + | chr3.4:66828783-66828802 | None:intergenic | 40.0% | |
| GCATATTTCCTTGAACATGG+GGG | + | chr3.4:66828501-66828520 | None:intergenic | 40.0% | |
| GGATTCATTCAACCAAAGGT+TGG | - | chr3.4:66828297-66828316 | MS.gene048747:CDS | 40.0% | |
| GGGTAAGACCATCAATGTTA+AGG | + | chr3.4:66827921-66827940 | None:intergenic | 40.0% | |
| GGTTGGAACAAATTTGGACT+CGG | + | chr3.4:66829015-66829034 | None:intergenic | 40.0% | |
| GTTAGGCTAAAGTGCAACTT+TGG | - | chr3.4:66828414-66828433 | MS.gene048747:CDS | 40.0% | |
| GTTCCTGGTTGGAACAAATT+TGG | + | chr3.4:66829021-66829040 | None:intergenic | 40.0% | |
| TAGGATCTGATGTTAGTGCT+GGG | - | chr3.4:66829445-66829464 | MS.gene048747:CDS | 40.0% | |
| TCAAGGCTAAAGTGCAACTT+TGG | + | chr3.4:66828727-66828746 | None:intergenic | 40.0% | |
| TCAGTGGTACAGTAACATCA+AGG | + | chr3.4:66828744-66828763 | None:intergenic | 40.0% | |
| TCGCATAAAGGAACTGTGAA+TGG | + | chr3.4:66828376-66828395 | None:intergenic | 40.0% | |
| TGCCAATAACAAGTGGTTGT+AGG | - | chr3.4:66828969-66828988 | MS.gene048747:intron | 40.0% | |
| TGCGTGTAGAAACAGGTTTA+AGG | + | chr3.4:66828939-66828958 | None:intergenic | 40.0% | |
| TTTCTTCCTTTGCTGCTGAT+GGG | - | chr3.4:66829403-66829422 | MS.gene048747:CDS | 40.0% | |
| ! | AGTCCAAATTTGTTCCAACC+AGG | - | chr3.4:66829015-66829034 | MS.gene048747:intron | 40.0% |
| ! | ATTCAACCAAAGGTTGGTCA+AGG | - | chr3.4:66828303-66828322 | MS.gene048747:CDS | 40.0% |
| ! | CAGCAGTTTTCAAAGTTAGG+GGG | - | chr3.4:66828641-66828660 | MS.gene048747:intron | 40.0% |
| ! | CATATGTGTGTAAAGCACCA+AGG | + | chr3.4:66828341-66828360 | None:intergenic | 40.0% |
| ! | GTAGAAACAGGTTTAAGGTC+AGG | + | chr3.4:66828934-66828953 | None:intergenic | 40.0% |
| ! | TAACATTGATGGTCTTACCC+TGG | - | chr3.4:66827921-66827940 | MS.gene048747:CDS | 40.0% |
| !! | AAACCTGTTTCTACACGCAT+AGG | - | chr3.4:66828940-66828959 | MS.gene048747:intron | 40.0% |
| !! | AACCTGTTTCTACACGCATA+GGG | - | chr3.4:66828941-66828960 | MS.gene048747:intron | 40.0% |
| !! | GGGGCCATTTTGAAAAGATA+AGG | + | chr3.4:66828596-66828615 | None:intergenic | 40.0% |
| !!! | ACTTTCCACTCCTTTTTCAG+TGG | + | chr3.4:66828760-66828779 | None:intergenic | 40.0% |
| !!! | GGTGTTTTTTGTTACAGGTG+TGG | - | chr3.4:66828832-66828851 | MS.gene048747:intron | 40.0% |
| AAACAGAGTATGGCAGGTTC+AGG | - | chr3.4:66829174-66829193 | MS.gene048747:CDS | 45.0% | |
| AATGTCGGCAGCTAGGTTAA+GGG | + | chr3.4:66827962-66827981 | None:intergenic | 45.0% | |
| ACTTGATGTTGCTCGTGTGT+TGG | - | chr3.4:66828149-66828168 | MS.gene048747:CDS | 45.0% | |
| AGGATCTGATGTTAGTGCTG+GGG | - | chr3.4:66829446-66829465 | MS.gene048747:CDS | 45.0% | |
| CAAGGAATTGGCAGTTTCCT+TGG | - | chr3.4:66828321-66828340 | MS.gene048747:CDS | 45.0% | |
| CACGAGCAACATCAAGTTTG+TGG | + | chr3.4:66828146-66828165 | None:intergenic | 45.0% | |
| CACTGTTCCATTGAATCACC+TGG | - | chr3.4:66828242-66828261 | MS.gene048747:CDS | 45.0% | |
| CAGGTGATTCAATGGAACAG+TGG | + | chr3.4:66828244-66828263 | None:intergenic | 45.0% | |
| CATGCGTTCACTGAAGTAAG+CGG | + | chr3.4:66828049-66828068 | None:intergenic | 45.0% | |
| CCAATTCCTTGACCAACCTT+TGG | + | chr3.4:66828312-66828331 | None:intergenic | 45.0% | |
| CCCACGAACCTTAACATTGA+TGG | - | chr3.4:66827910-66827929 | MS.gene048747:CDS | 45.0% | |
| CCTCACTTTGAGTCGCATAA+AGG | + | chr3.4:66828388-66828407 | None:intergenic | 45.0% | |
| CCTCTTTCTCTCCAAGTGAT+GGG | - | chr3.4:66829310-66829329 | MS.gene048747:CDS | 45.0% | |
| CCTTTATGCGACTCAAAGTG+AGG | - | chr3.4:66828385-66828404 | MS.gene048747:CDS | 45.0% | |
| CGACACGTGTCCAAAAAAAG+GGG | + | chr3.4:66828615-66828634 | None:intergenic | 45.0% | |
| CTGTACCACTGAAAAAGGAG+TGG | - | chr3.4:66828752-66828771 | MS.gene048747:intron | 45.0% | |
| GATCAAGCAGTGTTCAAGGA+TGG | + | chr3.4:66827995-66828014 | None:intergenic | 45.0% | |
| GCGACACGTGTCCAAAAAAA+GGG | + | chr3.4:66828616-66828635 | None:intergenic | 45.0% | |
| GTTATGGAACGTATTGCTCC+TGG | - | chr3.4:66828207-66828226 | MS.gene048747:CDS | 45.0% | |
| TCGACCTCTAATCTGATGCA+GGG | - | chr3.4:66829237-66829256 | MS.gene048747:CDS | 45.0% | |
| TGGAAAGTCCGTGCTAACAA+TGG | - | chr3.4:66828772-66828791 | MS.gene048747:intron | 45.0% | |
| TGTTACAGGTGTGGCATTCT+CGG | - | chr3.4:66828841-66828860 | MS.gene048747:intron | 45.0% | |
| TTCGAACTGGACTCTGATGA+TGG | - | chr3.4:66828892-66828911 | MS.gene048747:intron | 45.0% | |
| TTCTTCCTTTGCTGCTGATG+GGG | - | chr3.4:66829404-66829423 | MS.gene048747:CDS | 45.0% | |
| TTTGCTGCTGATGGGGTTAT+GGG | - | chr3.4:66829411-66829430 | MS.gene048747:CDS | 45.0% | |
| ! | AGCGGCTTTGATTTCTCGAT+CGG | + | chr3.4:66828031-66828050 | None:intergenic | 45.0% |
| ! | CCAAAGGTTGGTCAAGGAAT+TGG | - | chr3.4:66828309-66828328 | MS.gene048747:CDS | 45.0% |
| ! | TGTTTCTACACGCATAGGGT+CGG | - | chr3.4:66828945-66828964 | MS.gene048747:intron | 45.0% |
| ! | TTCTCTCCAAGTGATGGGAA+TGG | - | chr3.4:66829315-66829334 | MS.gene048747:CDS | 45.0% |
| ACTATTCCGTTCACTGCTGC+TGG | - | chr3.4:66829285-66829304 | MS.gene048747:CDS | 50.0% | |
| ATGATTGTCACACGCTTGCC+TGG | + | chr3.4:66828087-66828106 | None:intergenic | 50.0% | |
| CAATGTCGGCAGCTAGGTTA+AGG | + | chr3.4:66827963-66827982 | None:intergenic | 50.0% | |
| CAGGAACAGCAGCAGTGTTA+CGG | + | chr3.4:66829053-66829072 | None:intergenic | 50.0% | |
| CATAACCCCATCAGCAGCAA+AGG | + | chr3.4:66829412-66829431 | None:intergenic | 50.0% | |
| CATTCTCGGTCATTCGGACA+AGG | - | chr3.4:66828855-66828874 | MS.gene048747:intron | 50.0% | |
| CCCATCACTTGGAGAGAAAG+AGG | + | chr3.4:66829313-66829332 | None:intergenic | 50.0% | |
| CTCGACCTCTAATCTGATGC+AGG | - | chr3.4:66829236-66829255 | MS.gene048747:CDS | 50.0% | |
| CTCGGCATAGCATCAGGTAT+AGG | + | chr3.4:66828997-66829016 | None:intergenic | 50.0% | |
| CTGCATCAGATTAGAGGTCG+AGG | + | chr3.4:66829238-66829257 | None:intergenic | 50.0% | |
| CTTTGCTGCTGATGGGGTTA+TGG | - | chr3.4:66829410-66829429 | MS.gene048747:CDS | 50.0% | |
| GACCCTATGCGTGTAGAAAC+AGG | + | chr3.4:66828946-66828965 | None:intergenic | 50.0% | |
| GACCGATCAAGCAGTGTTCA+AGG | + | chr3.4:66827999-66828018 | None:intergenic | 50.0% | |
| GATGGGAGAGGACTCAATGT+CGG | + | chr3.4:66827977-66827996 | None:intergenic | 50.0% | |
| GCAGCAGTGAACGGAATAGT+AGG | + | chr3.4:66829285-66829304 | None:intergenic | 50.0% | |
| GCCTCTTTCTCTCCAAGTGA+TGG | - | chr3.4:66829309-66829328 | MS.gene048747:CDS | 50.0% | |
| GGCGACACGTGTCCAAAAAA+AGG | + | chr3.4:66828617-66828636 | None:intergenic | 50.0% | |
| GTGTGGCATTCTCGGTCATT+CGG | - | chr3.4:66828849-66828868 | MS.gene048747:intron | 50.0% | |
| TCATTCGGACAAGGTGTGTC+CGG | - | chr3.4:66828864-66828883 | MS.gene048747:intron | 50.0% | |
| TGAATCCAAAGGGCAAACCG+TGG | + | chr3.4:66828284-66828303 | None:intergenic | 50.0% | |
| TGTGTGCTTGCCCTTCAGAA+TGG | - | chr3.4:66829378-66829397 | MS.gene048747:CDS | 50.0% | |
| TTTGGACTCGGCATAGCATC+AGG | + | chr3.4:66829003-66829022 | None:intergenic | 50.0% | |
| ! | CTGCTTGATCGGTCGTGTTT+TGG | - | chr3.4:66828005-66828024 | MS.gene048747:CDS | 50.0% |
| ! | CTTTTGCCATCCCCATCTTC+AGG | - | chr3.4:66829210-66829229 | MS.gene048747:CDS | 50.0% |
| ! | GATCTGATGTTAGTGCTGGG+GGG | - | chr3.4:66829448-66829467 | MS.gene048747:CDS | 50.0% |
| ! | GGATCTGATGTTAGTGCTGG+GGG | - | chr3.4:66829447-66829466 | MS.gene048747:CDS | 50.0% |
| !! | ATTTTGGCCCCCCATGTTCA+AGG | - | chr3.4:66828490-66828509 | MS.gene048747:intron | 50.0% |
| !! | TGATGATGGTGTGCGCAACT+GGG | - | chr3.4:66828906-66828925 | MS.gene048747:intron | 50.0% |
| AACACTGCTGCTGTTCCTGC+AGG | - | chr3.4:66829054-66829073 | MS.gene048747:intron | 55.0% | |
| ACACTGCTGCTGTTCCTGCA+GGG | - | chr3.4:66829055-66829074 | MS.gene048747:intron | 55.0% | |
| ACAGTGGTCGAGACAACACC+AGG | + | chr3.4:66828228-66828247 | None:intergenic | 55.0% | |
| AGGACTCAATGTCGGCAGCT+AGG | + | chr3.4:66827969-66827988 | None:intergenic | 55.0% | |
| AGTAGGCAGTCCAAGCACCA+TGG | + | chr3.4:66829268-66829287 | None:intergenic | 55.0% | |
| ATGTCCCGAGCATGGAAACC+AGG | - | chr3.4:66828066-66828085 | MS.gene048747:CDS | 55.0% | |
| CTTGCCTGGTTTCCATGCTC+GGG | + | chr3.4:66828073-66828092 | None:intergenic | 55.0% | |
| GACATTTGGGTGCAGGTCCA+CGG | - | chr3.4:66828264-66828283 | MS.gene048747:CDS | 55.0% | |
| GAGTCCAGTTCGAACAGCTC+CGG | + | chr3.4:66828886-66828905 | None:intergenic | 55.0% | |
| GCAGTGTTCAAGGATGGGAG+AGG | + | chr3.4:66827989-66828008 | None:intergenic | 55.0% | |
| GCTTGCCTGGTTTCCATGCT+CGG | + | chr3.4:66828074-66828093 | None:intergenic | 55.0% | |
| GGTCAAACCCTCATCAGCCA+GGG | + | chr3.4:66827941-66827960 | None:intergenic | 55.0% | |
| GGTCGGCTGCCAATAACAAG+TGG | - | chr3.4:66828962-66828981 | MS.gene048747:intron | 55.0% | |
| GGTCTTACCCTGGCTGATGA+GGG | - | chr3.4:66827931-66827950 | MS.gene048747:CDS | 55.0% | |
| GTTGCTCGTGTGTTGGACGA+GGG | - | chr3.4:66828156-66828175 | MS.gene048747:CDS | 55.0% | |
| TCACCTGGACATTTGGGTGC+AGG | - | chr3.4:66828257-66828276 | MS.gene048747:CDS | 55.0% | |
| TGTTGCTCGTGTGTTGGACG+AGG | - | chr3.4:66828155-66828174 | MS.gene048747:CDS | 55.0% | |
| TTCCAACCAGGAACCTCTGC+TGG | - | chr3.4:66829027-66829046 | MS.gene048747:intron | 55.0% | |
| ! | AGGTCGAGGCACCTGAAGAT+GGG | + | chr3.4:66829224-66829243 | None:intergenic | 55.0% |
| ! | GATGATGGTGTGCGCAACTG+GGG | - | chr3.4:66828907-66828926 | MS.gene048747:intron | 55.0% |
| ! | TGGTCTTACCCTGGCTGATG+AGG | - | chr3.4:66827930-66827949 | MS.gene048747:CDS | 55.0% |
| !! | CTGATGATGGTGTGCGCAAC+TGG | - | chr3.4:66828905-66828924 | MS.gene048747:intron | 55.0% |
| AGCAGTGTTACGGCCAGCAG+AGG | + | chr3.4:66829043-66829062 | None:intergenic | 60.0% | |
| CAGGTCCACGGTTTGCCCTT+TGG | - | chr3.4:66828276-66828295 | MS.gene048747:CDS | 60.0% | |
| GCAGTCCAAGCACCATGGAG+CGG | + | chr3.4:66829263-66829282 | None:intergenic | 60.0% | |
| GCGGCCCTGCATCAGATTAG+AGG | + | chr3.4:66829244-66829263 | None:intergenic | 60.0% | |
| GGACCTGCACCCAAATGTCC+AGG | + | chr3.4:66828263-66828282 | None:intergenic | 60.0% | |
| GGGTCAAACCCTCATCAGCC+AGG | + | chr3.4:66827942-66827961 | None:intergenic | 60.0% | |
| GTGAACGCATGTCCCGAGCA+TGG | - | chr3.4:66828058-66828077 | MS.gene048747:CDS | 60.0% | |
| GTGTCCGGAGCTGTTCGAAC+TGG | - | chr3.4:66828879-66828898 | MS.gene048747:intron | 60.0% | |
| GTGTGTTGGACGAGGGTCCA+TGG | - | chr3.4:66828163-66828182 | MS.gene048747:CDS | 60.0% | |
| TGTCCTCGCTGCTCAGACTG+CGG | - | chr3.4:66829143-66829162 | MS.gene048747:CDS | 60.0% | |
| TTACGGCCAGCAGAGGTTCC+TGG | + | chr3.4:66829036-66829055 | None:intergenic | 60.0% | |
| ! | GAGGCACCAGCAGCAGTGAA+CGG | + | chr3.4:66829294-66829313 | None:intergenic | 60.0% |
| ! | GAGGCACCTGAAGATGGGGA+TGG | + | chr3.4:66829219-66829238 | None:intergenic | 60.0% |
| ! | GAGGTCGAGGCACCTGAAGA+TGG | + | chr3.4:66829225-66829244 | None:intergenic | 60.0% |
| ! | GGTCGAGGCACCTGAAGATG+GGG | + | chr3.4:66829223-66829242 | None:intergenic | 60.0% |
| GGCCAGCAGAGGTTCCTGGT+TGG | + | chr3.4:66829032-66829051 | None:intergenic | 65.0% | |
| GTACCGCAGTCTGAGCAGCG+AGG | + | chr3.4:66829149-66829168 | None:intergenic | 65.0% | |
| TCTGATGCAGGGCCGCTCCA+TGG | - | chr3.4:66829248-66829267 | MS.gene048747:CDS | 65.0% | |
| CAGGGCCGCTCCATGGTGCT+TGG | - | chr3.4:66829255-66829274 | MS.gene048747:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 66827904 | 66829521 | 66827904 | ID=MS.gene048747 |
| chr3.4 | mRNA | 66827904 | 66829521 | 66827904 | ID=MS.gene048747.t1;Parent=MS.gene048747 |
| chr3.4 | exon | 66829083 | 66829521 | 66829083 | ID=MS.gene048747.t1.exon1;Parent=MS.gene048747.t1 |
| chr3.4 | CDS | 66829083 | 66829521 | 66829083 | ID=cds.MS.gene048747.t1;Parent=MS.gene048747.t1 |
| chr3.4 | exon | 66828512 | 66828576 | 66828512 | ID=MS.gene048747.t1.exon2;Parent=MS.gene048747.t1 |
| chr3.4 | CDS | 66828512 | 66828576 | 66828512 | ID=cds.MS.gene048747.t1;Parent=MS.gene048747.t1 |
| chr3.4 | exon | 66827904 | 66828434 | 66827904 | ID=MS.gene048747.t1.exon3;Parent=MS.gene048747.t1 |
| chr3.4 | CDS | 66827904 | 66828434 | 66827904 | ID=cds.MS.gene048747.t1;Parent=MS.gene048747.t1 |
| Gene Sequence |
| Protein sequence |
