AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042559

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042559.t1 MTR_6g033215 81.006 179 34 0 2 180 102 280 5.38e-107 317
MS.gene042559.t1 MTR_8g468010 66.667 63 21 0 110 172 1 63 4.01e-26 102
MS.gene042559.t1 MTR_1g032270 47.368 114 54 3 93 205 1 109 4.74e-26 102
MS.gene042559.t1 MTR_0010s0370 30.519 154 107 0 19 172 24 177 8.90e-25 100
MS.gene042559.t1 MTR_0010s0350 30.519 154 107 0 19 172 24 177 8.90e-25 100
MS.gene042559.t1 MTR_4g075740 41.667 144 56 4 2 140 22 142 3.67e-23 95.1
MS.gene042559.t1 MTR_6g053230 25.683 183 97 2 1 180 22 168 4.07e-21 95.5
MS.gene042559.t1 MTR_3g053920 34.615 104 68 0 22 125 29 132 2.05e-20 90.9
MS.gene042559.t1 MTR_2g061500 31.683 101 69 0 22 122 29 129 2.80e-16 75.5
MS.gene042559.t1 MTR_6g053790 66.667 57 19 0 131 187 35 91 5.45e-16 78.6
MS.gene042559.t1 MTR_4g103530 37.079 89 56 0 52 140 5 93 7.15e-16 75.9
MS.gene042559.t1 MTR_3g041640 45.205 73 36 1 110 182 1 69 7.53e-15 71.6
MS.gene042559.t1 MTR_3g024240 28.571 105 75 0 76 180 54 158 3.70e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 112 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGAAGACAACAAGTTTA+TGG 0.215338 6.3:+21435414 MS.gene042559:CDS
AGGCGAGGCTCGGTCCTATT+TGG 0.225165 6.3:+21435362 MS.gene042559:CDS
CGGCTCTGGCTCGGCTTGGC+TGG 0.282053 6.3:-21437769 None:intergenic
CTATGAATACTACGGAGATT+TGG 0.290942 6.3:+21435554 MS.gene042559:CDS
CAGGTACATCAATTGCCTTT+TGG 0.306623 6.3:+21435580 MS.gene042559:CDS
CTGAGTGAAATTCGGCCTTT+TGG 0.307507 6.3:-21435269 None:intergenic
TGCGCGGCTTCCCATGCTGC+TGG 0.312355 6.3:-21437820 None:intergenic
TTGCTTGATCTTTGCCTTGT+TGG 0.327557 6.3:+21435298 MS.gene042559:CDS
CGAACTTCGATCAAGGATTC+TGG 0.344757 6.3:-21435464 None:intergenic
GGCGAGGCTCGGTCCTATTT+GGG 0.365608 6.3:+21435363 MS.gene042559:CDS
TGGTCAGACTTTGTAAGGTT+TGG 0.370757 6.3:-21437194 None:intergenic
TATGAATACTACGGAGATTT+GGG 0.376905 6.3:+21435555 MS.gene042559:CDS
AGTCATTCATTGGCATTCAA+TGG 0.381785 6.3:+21436963 MS.gene042559:CDS
TCCTTCTTCGTTGCGACTGC+CGG 0.391800 6.3:-21436919 None:intergenic
TGACCTGGTCAGACTTTGTA+AGG 0.393344 6.3:-21437199 None:intergenic
TGATACTTAGGCTCCCAAAT+AGG 0.399080 6.3:-21435376 None:intergenic
TGACATTCAAAGTCATTCAT+TGG 0.400619 6.3:+21436953 MS.gene042559:CDS
TTGGCGGCTCTGGCTCGGCT+TGG 0.410100 6.3:-21437773 None:intergenic
CGGCTTCCCATGCTGCTGGA+TGG 0.415055 6.3:-21437816 None:intergenic
GTCACGTTGGTAAAATGATT+AGG 0.416016 6.3:+21435638 MS.gene042559:CDS
CAAATCTCCGTAGTATTCAT+AGG 0.423177 6.3:-21435553 None:intergenic
GTCATTCATTGGCATTCAAT+GGG 0.434348 6.3:+21436964 MS.gene042559:CDS
ATGACTTTGAATGTCATTGA+TGG 0.444935 6.3:-21436946 None:intergenic
TTGAGGCCCACCATCTCTAC+TGG 0.458356 6.3:-21437903 None:intergenic
CTTAACATCAATGGTGATCA+TGG 0.463205 6.3:+21435238 MS.gene042559:CDS
AATTCAGCCTGAGTGAAATT+CGG 0.464103 6.3:-21435277 None:intergenic
CTCCAACGTAGCTAAATGAA+TGG 0.466640 6.3:-21435341 None:intergenic
GTATTCATAGGCAGCGTCAT+AGG 0.470963 6.3:-21435541 None:intergenic
ATCAACGTCATTTGATACTT+AGG 0.475343 6.3:-21435388 None:intergenic
TTAGGCCCAGCTTCCTCTTG+AGG 0.485984 6.3:-21437920 None:intergenic
TCGAGCTGAAATTGCGGTGG+AGG 0.486962 6.3:+21435708 MS.gene042559:CDS
CTGCACTAGGTTACGAGCTA+TGG 0.491883 6.3:-21437849 None:intergenic
TGTCAAAGATCAGACGGAAC+GGG 0.492106 6.3:+21437077 MS.gene042559:intron
CATCAAGCAGTGAGAAGAGA+TGG 0.493344 6.3:+21436808 MS.gene042559:CDS
GGTGGGCCTCAAGAGGAAGC+TGG 0.494227 6.3:+21437914 MS.gene042559:CDS
GTGGACGGAGATCGGTCCTA+TGG 0.498240 6.3:+21437112 MS.gene042559:CDS
ATAACCAGCTCCTGTTGTAA+TGG 0.500435 6.3:-21435733 None:intergenic
TCATTGGCATTCAATGGGAA+TGG 0.502139 6.3:+21436969 MS.gene042559:CDS
TCCGGCAGTCGCAACGAAGA+AGG 0.504727 6.3:+21436918 MS.gene042559:CDS
CTGGTTATTGAGAGGAAGGA+AGG 0.504930 6.3:+21435748 MS.gene042559:CDS
ATCATGGTGTTGCATCCAAA+AGG 0.506161 6.3:+21435254 MS.gene042559:CDS
GTGGGCCTCAAGAGGAAGCT+GGG 0.507578 6.3:+21437915 MS.gene042559:CDS
AGGAAGCTGGGCCTAAGAAA+AGG 0.511062 6.3:+21437927 MS.gene042559:CDS
TACTACGGAGATTTGGGTCC+AGG 0.511672 6.3:+21435561 MS.gene042559:CDS
TCAAATGACGTTGATCCTCA+TGG 0.517064 6.3:+21435396 MS.gene042559:CDS
TTCGATCAAGGATTCTGGAC+AGG 0.518463 6.3:-21435459 None:intergenic
ACTGATGCTTGGTCATCATT+AGG 0.519328 6.3:-21437680 None:intergenic
ACCCATTCATTTAGCTACGT+TGG 0.519492 6.3:+21435339 MS.gene042559:CDS
CATTCATTTAGCTACGTTGG+AGG 0.521212 6.3:+21435342 MS.gene042559:CDS
CAAAAGGCAATTGATGTACC+TGG 0.523042 6.3:-21435579 None:intergenic
GAAGCAAGCAAGTGAATTGT+CGG 0.524252 6.3:+21436879 MS.gene042559:CDS
TCCAACGTAGCTAAATGAAT+GGG 0.525622 6.3:-21435340 None:intergenic
GCAACCACGAACTTCGATCA+AGG 0.527669 6.3:-21435471 None:intergenic
GGTGGAGGCACCATTACAAC+AGG 0.528316 6.3:+21435723 MS.gene042559:CDS
TTGCAGCCATCCAGCAGCAT+GGG 0.530671 6.3:+21437810 MS.gene042559:CDS
TATGGTTCAGCTGTATTCAA+AGG 0.536866 6.3:+21435432 MS.gene042559:CDS
TAAAAGAGCCAGGCTGCACT+AGG 0.538331 6.3:-21437862 None:intergenic
ATCAAGCAGTGAGAAGAGAT+GGG 0.540224 6.3:+21436809 MS.gene042559:CDS
ATGGAGAGACTTAACATCAA+TGG 0.540353 6.3:+21435229 MS.gene042559:CDS
GAGAACAAAGCTGTTGGTGG+AGG 0.542302 6.3:+21436849 MS.gene042559:CDS
GCTGAGAACAAAGCTGTTGG+TGG 0.542441 6.3:+21436846 MS.gene042559:CDS
GGAGCTGGTTATTGAGAGGA+AGG 0.543244 6.3:+21435744 MS.gene042559:CDS
GAATCCTTGATCGAAGTTCG+TGG 0.544126 6.3:+21435467 MS.gene042559:CDS
CGAGCTATGGCTGGCTTGCG+CGG 0.545599 6.3:-21437836 None:intergenic
GCTACGTTGGAGGCGAGGCT+CGG 0.548205 6.3:+21435352 MS.gene042559:CDS
GCACGTGGGGCCAGTAGAGA+TGG 0.551020 6.3:+21437893 MS.gene042559:CDS
CGTGGGGCCAGTAGAGATGG+TGG 0.554471 6.3:+21437896 MS.gene042559:CDS
GTGAGATGGTGGACGGAGAT+CGG 0.559631 6.3:+21437104 MS.gene042559:CDS
GCACTAGCCATAAAAGAGCC+AGG 0.560161 6.3:-21437872 None:intergenic
CCACTGGTAGTGTCTTCCAT+AGG 0.563514 6.3:-21437128 None:intergenic
GTACAGAAAATCTAACGCAC+TGG 0.567955 6.3:+21438913 MS.gene042559:intron
GCTCGTAACCTAGTGCAGCC+TGG 0.568458 6.3:+21437854 MS.gene042559:CDS
TTGCCTTGTTGGTCGAGTGA+TGG 0.568832 6.3:+21435309 MS.gene042559:CDS
TAGAGATGGTGGGCCTCAAG+AGG 0.568834 6.3:+21437907 MS.gene042559:CDS
AAAGCTGAGAACAAAGCTGT+TGG 0.571483 6.3:+21436843 MS.gene042559:CDS
GGCACCATTACAACAGGAGC+TGG 0.574101 6.3:+21435729 MS.gene042559:CDS
ACGGAACGGGCTTAGTGAGA+TGG 0.577012 6.3:+21437090 MS.gene042559:CDS
ATTTAGCTACGTTGGAGGCG+AGG 0.577021 6.3:+21435347 MS.gene042559:CDS
GACGCTGCCTATGAATACTA+CGG 0.578204 6.3:+21435546 MS.gene042559:CDS
GCAAGTGAATTGTCGGTGGT+CGG 0.579471 6.3:+21436886 MS.gene042559:CDS
TGGATTCATGGATGAAAAGG+TGG 0.591039 6.3:+21435600 MS.gene042559:CDS
ACTAGGTTACGAGCTATGGC+TGG 0.592328 6.3:-21437845 None:intergenic
ATTGCAGCCATCCAGCAGCA+TGG 0.597787 6.3:+21437809 MS.gene042559:CDS
AACAGGAGCTGGTTATTGAG+AGG 0.601021 6.3:+21435740 MS.gene042559:CDS
GAAAAGGTGGATGCCCTCGT+TGG 0.606428 6.3:+21435613 MS.gene042559:CDS
GCCCTCGTTGGTAGTCACGT+TGG 0.611070 6.3:+21435625 MS.gene042559:CDS
AGCTGTTGGTGGAGGCAACA+AGG 0.611858 6.3:+21436857 MS.gene042559:CDS
ATGTCAAAGATCAGACGGAA+CGG 0.613087 6.3:+21437076 MS.gene042559:intron
TTGTTGAGACAAATTCTGCA+TGG 0.620914 6.3:-21437733 None:intergenic
GTGGGGCCAGTAGAGATGGT+GGG 0.621338 6.3:+21437897 MS.gene042559:CDS
TAATCAGCAGCTTTAAACAT+GGG 0.621982 6.3:-21437710 None:intergenic
CAAAAGGCCGAATTTCACTC+AGG 0.630035 6.3:+21435270 MS.gene042559:CDS
TAAAATGATTAGGTTCGATG+AGG 0.630764 6.3:+21435648 MS.gene042559:CDS
GAATGGAATTTCAAATCACA+AGG 0.633119 6.3:+21436986 MS.gene042559:CDS
GAACGGGCTTAGTGAGATGG+TGG 0.636361 6.3:+21437093 MS.gene042559:CDS
GTAATCAGCAGCTTTAAACA+TGG 0.636702 6.3:-21437711 None:intergenic
GGGCTTAGTGAGATGGTGGA+CGG 0.637382 6.3:+21437097 MS.gene042559:CDS
AATCAGCAGCTTTAAACATG+GGG 0.637906 6.3:-21437709 None:intergenic
CAGTCGCAACGAAGAAGGAG+CGG 0.645179 6.3:+21436923 MS.gene042559:CDS
AGTTCGAGCTGAAATTGCGG+TGG 0.646425 6.3:+21435705 MS.gene042559:CDS
GCGAGTTCGAGCTGAAATTG+CGG 0.651352 6.3:+21435702 MS.gene042559:CDS
CTATGGAAGACACTACCAGT+GGG 0.655812 6.3:+21437129 MS.gene042559:CDS
CCTATGGAAGACACTACCAG+TGG 0.667302 6.3:+21437128 MS.gene042559:CDS
TAACCATCACTCGACCAACA+AGG 0.671446 6.3:-21435312 None:intergenic
TCAAGCAGTGAGAAGAGATG+GGG 0.680032 6.3:+21436810 MS.gene042559:CDS
TAAACTTGTTGTCTTCCATG+AGG 0.683373 6.3:-21435411 None:intergenic
ACTCGCATAAACTTCCGCCA+CGG 0.683708 6.3:-21435685 None:intergenic
GCAAGCAAGTGAATTGTCGG+TGG 0.684893 6.3:+21436882 MS.gene042559:CDS
ACCAACGTGACTACCAACGA+GGG 0.688470 6.3:-21435626 None:intergenic
TACCAACGTGACTACCAACG+AGG 0.709599 6.3:-21435627 None:intergenic
ATCAGCAGCTTTAAACATGG+GGG 0.715197 6.3:-21437708 None:intergenic
TATGGAAGACACTACCAGTG+GGG 0.770504 6.3:+21437130 MS.gene042559:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTGAAAAAAATGAAA+CGG + chr6.3:21438024-21438043 MS.gene042559:intron 10.0%
!!! GATTAAAAAATATTTTATGT+TGG + chr6.3:21436476-21436495 MS.gene042559:intron 10.0%
!!! TTTAACTTTCTTTAAATATA+TGG + chr6.3:21437052-21437071 MS.gene042559:intron 10.0%
!! ATGATAATATTAGTAAACTA+AGG + chr6.3:21436537-21436556 MS.gene042559:intron 15.0%
!! TTCAAAAATTAGATTATCTA+TGG - chr6.3:21438014-21438033 None:intergenic 15.0%
!!! TTTGACTATGTTTTAATTTT+AGG - chr6.3:21436277-21436296 None:intergenic 15.0%
!! ATAGGAAAATAATCTTATGA+AGG - chr6.3:21438738-21438757 None:intergenic 20.0%
!! TAATAGTTTCACAAAGAAAA+AGG - chr6.3:21438173-21438192 None:intergenic 20.0%
!! TAGTCAAAATAACAAATCAA+TGG + chr6.3:21436289-21436308 MS.gene042559:intron 20.0%
!! TATGTATGAAATATTGAGTA+AGG - chr6.3:21436131-21436150 None:intergenic 20.0%
!! TATTGAAGCTAATAAAATTG+AGG + chr6.3:21438191-21438210 MS.gene042559:intron 20.0%
!! TTTACTTGGTTTAAAAGTTT+GGG + chr6.3:21438615-21438634 MS.gene042559:intron 20.0%
!!! AAACTTTTAAACCAAGTAAA+AGG - chr6.3:21438615-21438634 None:intergenic 20.0%
!!! ATACAGAAAATTGTTTTCAA+AGG + chr6.3:21437574-21437593 MS.gene042559:intron 20.0%
!!! TTATGTTGGACTTTAATTTT+GGG + chr6.3:21436490-21436509 MS.gene042559:intron 20.0%
!!! TTTATGTTGGACTTTAATTT+TGG + chr6.3:21436489-21436508 MS.gene042559:intron 20.0%
!!! TTTTACTTGGTTTAAAAGTT+TGG + chr6.3:21438614-21438633 MS.gene042559:intron 20.0%
! AATATTAGTAAACTAAGGAG+TGG + chr6.3:21436542-21436561 MS.gene042559:intron 25.0%
! AATGATTATTGATGAACATG+TGG - chr6.3:21437506-21437525 None:intergenic 25.0%
! ATATTAGTAAACTAAGGAGT+GGG + chr6.3:21436543-21436562 MS.gene042559:intron 25.0%
! ATGATTATTGATGAACATGT+GGG - chr6.3:21437505-21437524 None:intergenic 25.0%
! ATTCTTGGAACTTTATTAGT+GGG + chr6.3:21438424-21438443 MS.gene042559:intron 25.0%
! ATTTCAAATCACAAGGTATA+CGG + chr6.3:21436993-21437012 MS.gene042559:intron 25.0%
! CTAAAATCAAATTCCTTGTT+CGG + chr6.3:21438130-21438149 MS.gene042559:intron 25.0%
! GAGGAATTTCGTTATTTATT+GGG + chr6.3:21438210-21438229 MS.gene042559:intron 25.0%
! TATGAAATATTGAGTAAGGT+TGG - chr6.3:21436127-21436146 None:intergenic 25.0%
! TGAGGAATTTCGTTATTTAT+TGG + chr6.3:21438209-21438228 MS.gene042559:intron 25.0%
! TTTGAAAAAAATGAAACGGT+GGG + chr6.3:21438028-21438047 MS.gene042559:intron 25.0%
!! AACAACAAGGTTTTCTAATT+TGG - chr6.3:21438715-21438734 None:intergenic 25.0%
!! TTTTATGGTTTTCCAGAAAT+AGG + chr6.3:21438390-21438409 MS.gene042559:intron 25.0%
!!! ATGGAAGTTGATATATTTAG+AGG + chr6.3:21437295-21437314 MS.gene042559:intron 25.0%
!!! CTTCATTTTTAGCACTAATA+TGG - chr6.3:21438338-21438357 None:intergenic 25.0%
!!! GTTTTCAAGTATGAGAAATT+GGG + chr6.3:21435787-21435806 MS.gene042559:intron 25.0%
!!! TAATTTTAGGATGTGCTTTT+TGG - chr6.3:21436264-21436283 None:intergenic 25.0%
!!! TGCTAATAATGTTGTTTTTC+AGG + chr6.3:21437625-21437644 MS.gene042559:intron 25.0%
!!! TGTTTTCAAGTATGAGAAAT+TGG + chr6.3:21435786-21435805 MS.gene042559:intron 25.0%
!!! TTTGATGAAGTTGTTTTTGA+AGG - chr6.3:21436180-21436199 None:intergenic 25.0%
!!! TTTTGAAAAAAATGAAACGG+TGG + chr6.3:21438027-21438046 MS.gene042559:intron 25.0%
AAAAAATATCCGACCTTGTT+TGG - chr6.3:21436675-21436694 None:intergenic 30.0%
AATCTTATGAAGGAACAACA+AGG - chr6.3:21438728-21438747 None:intergenic 30.0%
ATCAACGTCATTTGATACTT+AGG - chr6.3:21435391-21435410 None:intergenic 30.0%
ATCTTAATTGCTGATGATTG+AGG - chr6.3:21437542-21437561 None:intergenic 30.0%
ATGACTTTGAATGTCATTGA+TGG - chr6.3:21436949-21436968 None:intergenic 30.0%
CTAGACAAATAAATCTACCT+TGG + chr6.3:21438451-21438470 MS.gene042559:intron 30.0%
GAATGGAATTTCAAATCACA+AGG + chr6.3:21436986-21437005 MS.gene042559:CDS 30.0%
GATGAGTTTCTTTATGCTAA+TGG + chr6.3:21437254-21437273 MS.gene042559:intron 30.0%
GATTCTTGGAACTTTATTAG+TGG + chr6.3:21438423-21438442 MS.gene042559:intron 30.0%
GCATTGAAAGAGACATTTAT+TGG - chr6.3:21437608-21437627 None:intergenic 30.0%
TAAAATGATTAGGTTCGATG+AGG + chr6.3:21435648-21435667 MS.gene042559:CDS 30.0%
TAATGATGAGAGAAAGTGAA+TGG + chr6.3:21436454-21436473 MS.gene042559:intron 30.0%
TAGGAAGAATAAGAGATTCT+TGG + chr6.3:21438409-21438428 MS.gene042559:intron 30.0%
TATGAATACTACGGAGATTT+GGG + chr6.3:21435555-21435574 MS.gene042559:CDS 30.0%
TATTAGTAAACTAAGGAGTG+GGG + chr6.3:21436544-21436563 MS.gene042559:intron 30.0%
TCACAAAGAAAAAGGATATC+CGG - chr6.3:21438165-21438184 None:intergenic 30.0%
TCTCTTATTCTTCCTATTTC+TGG - chr6.3:21438405-21438424 None:intergenic 30.0%
TGACATTCAAAGTCATTCAT+TGG + chr6.3:21436953-21436972 MS.gene042559:CDS 30.0%
TTCCAAGCTATAATACTCAT+TGG - chr6.3:21438078-21438097 None:intergenic 30.0%
TTCGATGAGGAAAAAAACTA+CGG + chr6.3:21435661-21435680 MS.gene042559:CDS 30.0%
TTTCAAATCACAAGGTATAC+GGG + chr6.3:21436994-21437013 MS.gene042559:intron 30.0%
! ATTCTGAAAAAAGTTGCTGT+TGG + chr6.3:21435511-21435530 MS.gene042559:CDS 30.0%
! TGGATATTCACAGGATTTTA+TGG + chr6.3:21438375-21438394 MS.gene042559:intron 30.0%
! TTTTCATCCATGAATCCAAA+AGG - chr6.3:21435598-21435617 None:intergenic 30.0%
! TTTTGGATTCATGGATGAAA+AGG + chr6.3:21435597-21435616 MS.gene042559:CDS 30.0%
!! CGAACAAGGAATTTGATTTT+AGG - chr6.3:21438132-21438151 None:intergenic 30.0%
!! TAATCAGCAGCTTTAAACAT+GGG - chr6.3:21437713-21437732 None:intergenic 30.0%
!!! AACAAGGTCGGATATTTTTT+CGG + chr6.3:21436675-21436694 MS.gene042559:intron 30.0%
!!! AAGTTGTTTTTGAAGGATGA+TGG - chr6.3:21436173-21436192 None:intergenic 30.0%
!!! GATATTTTTTCGGTTTGGTT+CGG + chr6.3:21436685-21436704 MS.gene042559:intron 30.0%
!!! GATGATGGATGAATGAATTT+TGG - chr6.3:21436158-21436177 None:intergenic 30.0%
!!! TGTTTTTCAGGTTCAAAAAG+TGG + chr6.3:21437637-21437656 MS.gene042559:intron 30.0%
AAATCCTCTAATAAGCCAGT+TGG - chr6.3:21438541-21438560 None:intergenic 35.0%
AATCCTCTAATAAGCCAGTT+GGG - chr6.3:21438540-21438559 None:intergenic 35.0%
AATGATGCATGGATGTATCA+TGG - chr6.3:21436221-21436240 None:intergenic 35.0%
AATTCAGCCTGAGTGAAATT+CGG - chr6.3:21435280-21435299 None:intergenic 35.0%
AGAAACCGAACCAAACTAAT+CGG + chr6.3:21435944-21435963 MS.gene042559:intron 35.0%
AGTCATTCATTGGCATTCAA+TGG + chr6.3:21436963-21436982 MS.gene042559:CDS 35.0%
ATGGAATGTCAAAGATCAGA+CGG + chr6.3:21437071-21437090 MS.gene042559:intron 35.0%
ATGGAGAGACTTAACATCAA+TGG + chr6.3:21435229-21435248 MS.gene042559:CDS 35.0%
ATTAACCATCAGTTTGTGTG+AGG + chr6.3:21436513-21436532 MS.gene042559:intron 35.0%
CAAATCTCCGTAGTATTCAT+AGG - chr6.3:21435556-21435575 None:intergenic 35.0%
CAATCAAAACCGATCTAGTT+TGG - chr6.3:21436629-21436648 None:intergenic 35.0%
CACCAACCTTAGAACATTAT+GGG - chr6.3:21437337-21437356 None:intergenic 35.0%
CATGGAAGACAACAAGTTTA+TGG + chr6.3:21435414-21435433 MS.gene042559:CDS 35.0%
CTATGAATACTACGGAGATT+TGG + chr6.3:21435554-21435573 MS.gene042559:CDS 35.0%
CTCGAAGTAATAGAGTTGAA+AGG + chr6.3:21438781-21438800 MS.gene042559:intron 35.0%
CTTAACATCAATGGTGATCA+TGG + chr6.3:21435238-21435257 MS.gene042559:CDS 35.0%
GACCAATGAGTATTATAGCT+TGG + chr6.3:21438073-21438092 MS.gene042559:intron 35.0%
GAGTTTCTTTATGCTAATGG+AGG + chr6.3:21437257-21437276 MS.gene042559:intron 35.0%
GTCATTCATTGGCATTCAAT+GGG + chr6.3:21436964-21436983 MS.gene042559:CDS 35.0%
GTTTCAAACCAAACCAAACA+AGG + chr6.3:21436659-21436678 MS.gene042559:intron 35.0%
TATGGTTCAGCTGTATTCAA+AGG + chr6.3:21435432-21435451 MS.gene042559:CDS 35.0%
TATTTAGAGGCCCAACAAAA+TGG + chr6.3:21437308-21437327 MS.gene042559:intron 35.0%
TCCAACGTAGCTAAATGAAT+GGG - chr6.3:21435343-21435362 None:intergenic 35.0%
TCCATGCTGATGAGAAAAAA+GGG + chr6.3:21438502-21438521 MS.gene042559:intron 35.0%
TCGATGAGGAAAAAAACTAC+GGG + chr6.3:21435662-21435681 MS.gene042559:CDS 35.0%
TGAAAATGCATGGAGAATTG+AGG + chr6.3:21438815-21438834 MS.gene042559:intron 35.0%
TGAACCAAACCAAACTAGAT+CGG + chr6.3:21436617-21436636 MS.gene042559:intron 35.0%
TTGTTGAGACAAATTCTGCA+TGG - chr6.3:21437736-21437755 None:intergenic 35.0%
TTTCTTTATGCTAATGGAGG+AGG + chr6.3:21437260-21437279 MS.gene042559:intron 35.0%
! AAAACCGATCTAGTTTGGTT+TGG - chr6.3:21436624-21436643 None:intergenic 35.0%
! AATTTTCTGTATGCACTTGC+AGG - chr6.3:21437566-21437585 None:intergenic 35.0%
! ATTATGGGCTTCCATTTTGT+TGG - chr6.3:21437322-21437341 None:intergenic 35.0%
! CCATGCATTTTCAAACTTGA+AGG - chr6.3:21438808-21438827 None:intergenic 35.0%
! CCTTCAAGTTTGAAAATGCA+TGG + chr6.3:21438805-21438824 MS.gene042559:intron 35.0%
! GCTATAATACTCATTGGTCT+CGG - chr6.3:21438072-21438091 None:intergenic 35.0%
! GTCACGTTGGTAAAATGATT+AGG + chr6.3:21435638-21435657 MS.gene042559:CDS 35.0%
! GTTTGTTGATGAATGATGCA+TGG - chr6.3:21436232-21436251 None:intergenic 35.0%
! TCAACAAAGTATTAGCGGAA+GGG + chr6.3:21437219-21437238 MS.gene042559:intron 35.0%
! TCAATTGCCTTTTGGATTCA+TGG + chr6.3:21435588-21435607 MS.gene042559:CDS 35.0%
! TTATGGGCTTCCATTTTGTT+GGG - chr6.3:21437321-21437340 None:intergenic 35.0%
! TTGGAACTTTATTAGTGGGT+TGG + chr6.3:21438428-21438447 MS.gene042559:intron 35.0%
! TTTTGTGTGTGGCATGATTA+GGG + chr6.3:21435819-21435838 MS.gene042559:intron 35.0%
!! AAATCTACCTTGGTGTCTAA+TGG + chr6.3:21438461-21438480 MS.gene042559:intron 35.0%
!! AATCAGCAGCTTTAAACATG+GGG - chr6.3:21437712-21437731 None:intergenic 35.0%
!! AATCTACCTTGGTGTCTAAT+GGG + chr6.3:21438462-21438481 MS.gene042559:intron 35.0%
!! ATCTAGTTTGGTTTGGTTCA+TGG - chr6.3:21436617-21436636 None:intergenic 35.0%
!! CAAACTAGATCGGTTTTGAT+TGG + chr6.3:21436627-21436646 MS.gene042559:intron 35.0%
!! CCTTGTTCGGTTTTATAAAC+CGG + chr6.3:21438143-21438162 MS.gene042559:intron 35.0%
!! GGTCAACTAGTACTTTTTGA+CGG + chr6.3:21437461-21437480 MS.gene042559:intron 35.0%
!! GTAATCAGCAGCTTTAAACA+TGG - chr6.3:21437714-21437733 None:intergenic 35.0%
!! GTCAACTAGTACTTTTTGAC+GGG + chr6.3:21437462-21437481 MS.gene042559:intron 35.0%
!! TAAACTTGTTGTCTTCCATG+AGG - chr6.3:21435414-21435433 None:intergenic 35.0%
!! TCTGTTCTAGACCTTTTCTT+AGG - chr6.3:21437941-21437960 None:intergenic 35.0%
!! TTATCATCGGATTGGTTCAT+CGG + chr6.3:21436567-21436586 MS.gene042559:intron 35.0%
!!! AATTCCCTTGTCTTTTTTGG+CGG - chr6.3:21437792-21437811 None:intergenic 35.0%
!!! GGAAAGTTTTGTTTTGTGTG+TGG + chr6.3:21435808-21435827 MS.gene042559:intron 35.0%
!!! TAGATCGGTTTTGATTGGTT+CGG + chr6.3:21436632-21436651 MS.gene042559:intron 35.0%
!!! TGCAATTCCCTTGTCTTTTT+TGG - chr6.3:21437795-21437814 None:intergenic 35.0%
AAAATGAAGAAGTCAGCCGT+AGG + chr6.3:21438349-21438368 MS.gene042559:intron 40.0%
AAACCTTACAAAGTCTGACC+AGG + chr6.3:21437196-21437215 MS.gene042559:intron 40.0%
AAAGCTGAGAACAAAGCTGT+TGG + chr6.3:21436843-21436862 MS.gene042559:CDS 40.0%
AAATCTCCCATTAGACACCA+AGG - chr6.3:21438471-21438490 None:intergenic 40.0%
AAATGAAGAAGTCAGCCGTA+GGG + chr6.3:21438350-21438369 MS.gene042559:intron 40.0%
AAATGCATGGAGAATTGAGG+AGG + chr6.3:21438818-21438837 MS.gene042559:intron 40.0%
AACCAATTGTTCATCACCGT+CGG - chr6.3:21436362-21436381 None:intergenic 40.0%
AATGCATGGAGAATTGAGGA+GGG + chr6.3:21438819-21438838 MS.gene042559:intron 40.0%
ACCCATTCATTTAGCTACGT+TGG + chr6.3:21435339-21435358 MS.gene042559:CDS 40.0%
ACGGTGATGAACAATTGGTT+TGG + chr6.3:21436362-21436381 MS.gene042559:intron 40.0%
ACTCTATTACTTCGAGCTGT+CGG - chr6.3:21438777-21438796 None:intergenic 40.0%
ACTGATGCTTGGTCATCATT+AGG - chr6.3:21437683-21437702 None:intergenic 40.0%
AGAAAAGTTAGATCGTGCCT+TGG + chr6.3:21438656-21438675 MS.gene042559:intron 40.0%
ATAACCAGCTCCTGTTGTAA+TGG - chr6.3:21435736-21435755 None:intergenic 40.0%
ATCAAGCAGTGAGAAGAGAT+GGG + chr6.3:21436809-21436828 MS.gene042559:CDS 40.0%
ATGCTGATGAGAAAAAAGGG+AGG + chr6.3:21438505-21438524 MS.gene042559:intron 40.0%
ATGTCAAAGATCAGACGGAA+CGG + chr6.3:21437076-21437095 MS.gene042559:intron 40.0%
CAAAAGGCAATTGATGTACC+TGG - chr6.3:21435582-21435601 None:intergenic 40.0%
CAAACCAAACCAAACAAGGT+CGG + chr6.3:21436663-21436682 MS.gene042559:intron 40.0%
CAAGAGATAAACGATCGTAG+CGG + chr6.3:21436333-21436352 MS.gene042559:intron 40.0%
CATCCAAGAGTTAGTAACCA+AGG - chr6.3:21438676-21438695 None:intergenic 40.0%
CATTCATTTAGCTACGTTGG+AGG + chr6.3:21435342-21435361 MS.gene042559:CDS 40.0%
CCACCAACCTTAGAACATTA+TGG - chr6.3:21437338-21437357 None:intergenic 40.0%
CCGGTTTATAAAACCGAACA+AGG - chr6.3:21438146-21438165 None:intergenic 40.0%
CCTGTTAGAAATAGTTGAGG+TGG + chr6.3:21438252-21438271 MS.gene042559:intron 40.0%
CGAACCGATGAAATCTTCAT+CGG + chr6.3:21435886-21435905 MS.gene042559:intron 40.0%
CGAACCGATGAAGATTTCAT+CGG - chr6.3:21435893-21435912 None:intergenic 40.0%
CTCCAACGTAGCTAAATGAA+TGG - chr6.3:21435344-21435363 None:intergenic 40.0%
CTCCATGCTGATGAGAAAAA+AGG + chr6.3:21438501-21438520 MS.gene042559:intron 40.0%
CTTACTGATGTTCACATGGA+GGG + chr6.3:21438585-21438604 MS.gene042559:intron 40.0%
GAAGCAAGCAAGTGAATTGT+CGG + chr6.3:21436879-21436898 MS.gene042559:CDS 40.0%
GCACCTGTTAGAAATAGTTG+AGG + chr6.3:21438249-21438268 MS.gene042559:intron 40.0%
GTACAGAAAATCTAACGCAC+TGG + chr6.3:21438913-21438932 MS.gene042559:intron 40.0%
GTTAGAAATAGTTGAGGTGG+TGG + chr6.3:21438255-21438274 MS.gene042559:intron 40.0%
TCAAATGACGTTGATCCTCA+TGG + chr6.3:21435396-21435415 MS.gene042559:CDS 40.0%
TCATACCTCACACAAACTGA+TGG - chr6.3:21436521-21436540 None:intergenic 40.0%
TCATTGGCATTCAATGGGAA+TGG + chr6.3:21436969-21436988 MS.gene042559:CDS 40.0%
TGATACTTAGGCTCCCAAAT+AGG - chr6.3:21435379-21435398 None:intergenic 40.0%
TGCTGATGAGAAAAAAGGGA+GGG + chr6.3:21438506-21438525 MS.gene042559:intron 40.0%
TGGAAGCCCATAATGTTCTA+AGG + chr6.3:21437328-21437347 MS.gene042559:intron 40.0%
TGGATTCATGGATGAAAAGG+TGG + chr6.3:21435600-21435619 MS.gene042559:CDS 40.0%
TGGTCAGACTTTGTAAGGTT+TGG - chr6.3:21437197-21437216 None:intergenic 40.0%
TGTAACGGTTAGGTTTGGAT+TGG + chr6.3:21435843-21435862 MS.gene042559:intron 40.0%
TTACTGATGTTCACATGGAG+GGG + chr6.3:21438586-21438605 MS.gene042559:intron 40.0%
TTGCTTGATCTTTGCCTTGT+TGG + chr6.3:21435298-21435317 MS.gene042559:CDS 40.0%
TTTGTGTGTGGCATGATTAG+GGG + chr6.3:21435820-21435839 MS.gene042559:intron 40.0%
! AACTTTTCTTCTACTGCACG+TGG - chr6.3:21438645-21438664 None:intergenic 40.0%
! ATAATACTCATTGGTCTCGG+CGG - chr6.3:21438069-21438088 None:intergenic 40.0%
! ATATCCGACCTTGTTTGGTT+TGG - chr6.3:21436670-21436689 None:intergenic 40.0%
! CAGGTACATCAATTGCCTTT+TGG + chr6.3:21435580-21435599 MS.gene042559:CDS 40.0%
! CCAGGTCAACAAAGTATTAG+CGG + chr6.3:21437214-21437233 MS.gene042559:intron 40.0%
! CGATGAAATCTTCATCGGTT+CGG + chr6.3:21435891-21435910 MS.gene042559:intron 40.0%
! CGATGAAGATTTCATCGGTT+CGG - chr6.3:21435888-21435907 None:intergenic 40.0%
! GAAAAAAGTTGCTGTTGGAG+AGG + chr6.3:21435516-21435535 MS.gene042559:CDS 40.0%
! GTCAACAAAGTATTAGCGGA+AGG + chr6.3:21437218-21437237 MS.gene042559:intron 40.0%
! GTTTTGTGTGTGGCATGATT+AGG + chr6.3:21435818-21435837 MS.gene042559:intron 40.0%
! TTGGAGCAAACACTTTTGCA+CGG - chr6.3:21437178-21437197 None:intergenic 40.0%
!! AAATCTTCATCGGTTCGGAT+TGG + chr6.3:21435896-21435915 MS.gene042559:intron 40.0%
!! AATTGGTTTGGTGTGGTTGA+TGG + chr6.3:21436374-21436393 MS.gene042559:intron 40.0%
!! AGCCCATAATGTTCTAAGGT+TGG + chr6.3:21437332-21437351 MS.gene042559:intron 40.0%
!! ATCAGCAGCTTTAAACATGG+GGG - chr6.3:21437711-21437730 None:intergenic 40.0%
!! ATCATGGTGTTGCATCCAAA+AGG + chr6.3:21435254-21435273 MS.gene042559:CDS 40.0%
!! CCAAACCGATTAGTTTGGTT+CGG - chr6.3:21435952-21435971 None:intergenic 40.0%
!! CCAAACTAATCGGTTTGGTT+CGG + chr6.3:21435954-21435973 MS.gene042559:intron 40.0%
!! CCACCTCAACTATTTCTAAC+AGG - chr6.3:21438255-21438274 None:intergenic 40.0%
!! CCATAATGTTCTAAGGTTGG+TGG + chr6.3:21437335-21437354 MS.gene042559:intron 40.0%
!! GATGAACAATTGGTTTGGTG+TGG + chr6.3:21436367-21436386 MS.gene042559:intron 40.0%
!! TGATTTTAGGAATTACGCGC+AGG - chr6.3:21438119-21438138 None:intergenic 40.0%
!! TTTGGATTGGTTCGGTTGAT+CGG + chr6.3:21435977-21435996 MS.gene042559:intron 40.0%
!!! GGTCGGATATTTTTTCGGTT+TGG + chr6.3:21436680-21436699 MS.gene042559:intron 40.0%
!!! GTGGTGGTATTGCTTTGTTT+TGG + chr6.3:21438271-21438290 MS.gene042559:intron 40.0%
!!! TCCCTTTTTTCTCATCAGCA+TGG - chr6.3:21438506-21438525 None:intergenic 40.0%
!!! TTTTTCGGTTTGGTTCGGTT+TGG + chr6.3:21436690-21436709 MS.gene042559:intron 40.0%
AAAAATGAAACGGTGGGACC+TGG + chr6.3:21438034-21438053 MS.gene042559:intron 45.0%
AACAGGAGCTGGTTATTGAG+AGG + chr6.3:21435740-21435759 MS.gene042559:CDS 45.0%
AATAAGCCAGTTGGGTCTAG+TGG - chr6.3:21438532-21438551 None:intergenic 45.0%
ACGTCAGCACACAAAAAGCA+AGG + chr6.3:21437440-21437459 MS.gene042559:intron 45.0%
AGAGCCGCCAAAAAAGACAA+GGG + chr6.3:21437785-21437804 MS.gene042559:CDS 45.0%
ATGATGTAGTCCGAGATAGC+TGG + chr6.3:21438847-21438866 MS.gene042559:intron 45.0%
ATGCATGGAGAATTGAGGAG+GGG + chr6.3:21438820-21438839 MS.gene042559:intron 45.0%
ATTATAGCTTGGAACTGCCG+AGG + chr6.3:21438084-21438103 MS.gene042559:intron 45.0%
CAAAAGGCCGAATTTCACTC+AGG + chr6.3:21435270-21435289 MS.gene042559:CDS 45.0%
CATCAAGCAGTGAGAAGAGA+TGG + chr6.3:21436808-21436827 MS.gene042559:CDS 45.0%
CATGTGAACATCAGTAAGGC+CGG - chr6.3:21438583-21438602 None:intergenic 45.0%
CCGAACCAAACTAATCGGTT+TGG + chr6.3:21435949-21435968 MS.gene042559:intron 45.0%
CCGCTAATACTTTGTTGACC+TGG - chr6.3:21437217-21437236 None:intergenic 45.0%
CCTCCATGTGAACATCAGTA+AGG - chr6.3:21438587-21438606 None:intergenic 45.0%
CCTTACTGATGTTCACATGG+AGG + chr6.3:21438584-21438603 MS.gene042559:intron 45.0%
CGAACTTCGATCAAGGATTC+TGG - chr6.3:21435467-21435486 None:intergenic 45.0%
CGCTACGATCGTTTATCTCT+TGG - chr6.3:21436335-21436354 None:intergenic 45.0%
CTAAGGAGTGGGGTTATCAT+CGG + chr6.3:21436554-21436573 MS.gene042559:intron 45.0%
CTATGGAAGACACTACCAGT+GGG + chr6.3:21437129-21437148 MS.gene042559:CDS 45.0%
CTCTATTACTTCGAGCTGTC+GGG - chr6.3:21438776-21438795 None:intergenic 45.0%
CTGGTTATTGAGAGGAAGGA+AGG + chr6.3:21435748-21435767 MS.gene042559:CDS 45.0%
CTGTGAATATCCAAGCCCTA+CGG - chr6.3:21438368-21438387 None:intergenic 45.0%
GAATCCTTGATCGAAGTTCG+TGG + chr6.3:21435467-21435486 MS.gene042559:CDS 45.0%
GACGCTGCCTATGAATACTA+CGG + chr6.3:21435546-21435565 MS.gene042559:CDS 45.0%
GACTAAACCAACGAAACCGA+AGG - chr6.3:21436717-21436736 None:intergenic 45.0%
GTATTCATAGGCAGCGTCAT+AGG - chr6.3:21435544-21435563 None:intergenic 45.0%
GTGCCTTGGTTACTAACTCT+TGG + chr6.3:21438670-21438689 MS.gene042559:intron 45.0%
TAACCATCACTCGACCAACA+AGG - chr6.3:21435315-21435334 None:intergenic 45.0%
TATGGAAGACACTACCAGTG+GGG + chr6.3:21437130-21437149 MS.gene042559:CDS 45.0%
TCAAGCAGTGAGAAGAGATG+GGG + chr6.3:21436810-21436829 MS.gene042559:CDS 45.0%
TCTATTACTTCGAGCTGTCG+GGG - chr6.3:21438775-21438794 None:intergenic 45.0%
TGACCTGGTCAGACTTTGTA+AGG - chr6.3:21437202-21437221 None:intergenic 45.0%
TGAGTGACCTATCATGCCTA+GGG - chr6.3:21436754-21436773 None:intergenic 45.0%
TGATGTAGTCCGAGATAGCT+GGG + chr6.3:21438848-21438867 MS.gene042559:intron 45.0%
TGTCAAAGATCAGACGGAAC+GGG + chr6.3:21437077-21437096 MS.gene042559:intron 45.0%
TTCGATCAAGGATTCTGGAC+AGG - chr6.3:21435462-21435481 None:intergenic 45.0%
! AGACCCAACTGGCTTATTAG+AGG + chr6.3:21438534-21438553 MS.gene042559:intron 45.0%
! CCGAACCAAACCGATTAGTT+TGG - chr6.3:21435957-21435976 None:intergenic 45.0%
! CTGAGTGAAATTCGGCCTTT+TGG - chr6.3:21435272-21435291 None:intergenic 45.0%
! CTTTTATGGCTAGTGCACGT+GGG + chr6.3:21437879-21437898 MS.gene042559:CDS 45.0%
! TAATACTCATTGGTCTCGGC+GGG - chr6.3:21438068-21438087 None:intergenic 45.0%
! TCTTTTATGGCTAGTGCACG+TGG + chr6.3:21437878-21437897 MS.gene042559:CDS 45.0%
! TGATTAGGGGTGTAACGGTT+AGG + chr6.3:21435833-21435852 MS.gene042559:intron 45.0%
! TGGAGCAAACACTTTTGCAC+GGG - chr6.3:21437177-21437196 None:intergenic 45.0%
! TGGCATGATTAGGGGTGTAA+CGG + chr6.3:21435828-21435847 MS.gene042559:intron 45.0%
! TTTTATGGCTAGTGCACGTG+GGG + chr6.3:21437880-21437899 MS.gene042559:CDS 45.0%
!! ACGGGTTTTGACCTCTTCTT+AGG - chr6.3:21437159-21437178 None:intergenic 45.0%
!! CGGGTTTTGACCTCTTCTTA+GGG - chr6.3:21437158-21437177 None:intergenic 45.0%
!! CTAATCGGTTTGGTTCGGTT+TGG + chr6.3:21435959-21435978 MS.gene042559:intron 45.0%
!! GGATTGGTTCATCGGTTTCA+CGG + chr6.3:21436575-21436594 MS.gene042559:intron 45.0%
!! GGGTTTTGACCTCTTCTTAG+GGG - chr6.3:21437157-21437176 None:intergenic 45.0%
!! GGTTTTGACCTCTTCTTAGG+GGG - chr6.3:21437156-21437175 None:intergenic 45.0%
!! TGGTTCGGTTTGGATTGGTT+CGG + chr6.3:21435969-21435988 MS.gene042559:intron 45.0%
!! TTCATCGGTTCGGATTGGTT+CGG + chr6.3:21435901-21435920 MS.gene042559:intron 45.0%
!! TTTGGTGTGGTTGATGGCTA+GGG + chr6.3:21436380-21436399 MS.gene042559:intron 45.0%
!! TTTGGTTCGGTTTGGACCTT+CGG + chr6.3:21436698-21436717 MS.gene042559:intron 45.0%
!!! CGGTTTTGATTGGTTCGGAT+CGG + chr6.3:21436637-21436656 MS.gene042559:intron 45.0%
!!! TGGAGGGGTATCCTTTTACT+TGG + chr6.3:21438601-21438620 MS.gene042559:intron 45.0%
AAAAAAACTACGGGCCGTGG+CGG + chr6.3:21435671-21435690 MS.gene042559:CDS 50.0%
AAAGAAGCTAGCCGACAGCA+GGG + chr6.3:21437397-21437416 MS.gene042559:intron 50.0%
ACCAACGTGACTACCAACGA+GGG - chr6.3:21435629-21435648 None:intergenic 50.0%
ACGTCATGTTGTCTGCAGGT+GGG - chr6.3:21437424-21437443 None:intergenic 50.0%
ACTAGGTTACGAGCTATGGC+TGG - chr6.3:21437848-21437867 None:intergenic 50.0%
ACTCGCATAAACTTCCGCCA+CGG - chr6.3:21435688-21435707 None:intergenic 50.0%
AGGAAAAAAACTACGGGCCG+TGG + chr6.3:21435668-21435687 MS.gene042559:CDS 50.0%
AGGAAGCTGGGCCTAAGAAA+AGG + chr6.3:21437927-21437946 MS.gene042559:CDS 50.0%
AGTTCGAGCTGAAATTGCGG+TGG + chr6.3:21435705-21435724 MS.gene042559:CDS 50.0%
ATTTAGCTACGTTGGAGGCG+AGG + chr6.3:21435347-21435366 MS.gene042559:CDS 50.0%
CAAGGTATACGGGCGCATTA+AGG + chr6.3:21437004-21437023 MS.gene042559:intron 50.0%
CAGAGCCGCCAAAAAAGACA+AGG + chr6.3:21437784-21437803 MS.gene042559:CDS 50.0%
CCTATGGAAGACACTACCAG+TGG + chr6.3:21437128-21437147 MS.gene042559:CDS 50.0%
CGAGAAGCCATTCAAGAAGC+CGG + chr6.3:21438561-21438580 MS.gene042559:intron 50.0%
CGGCCTTACTGATGTTCACA+TGG + chr6.3:21438581-21438600 MS.gene042559:intron 50.0%
CGTAGGGCTTGGATATTCAC+AGG + chr6.3:21438366-21438385 MS.gene042559:intron 50.0%
CGTGGAACAAGAGGATAAGG+TGG + chr6.3:21437374-21437393 MS.gene042559:intron 50.0%
CTGAGTGACCTATCATGCCT+AGG - chr6.3:21436755-21436774 None:intergenic 50.0%
CTGCACTAGGTTACGAGCTA+TGG - chr6.3:21437852-21437871 None:intergenic 50.0%
CTTACACCCCTAGGCATGAT+AGG + chr6.3:21436744-21436763 MS.gene042559:intron 50.0%
GAGATAAACGATCGTAGCGG+TGG + chr6.3:21436336-21436355 MS.gene042559:intron 50.0%
GAGTGACCTATCATGCCTAG+GGG - chr6.3:21436753-21436772 None:intergenic 50.0%
GAGTGGGGTTATCATCGGAT+TGG + chr6.3:21436559-21436578 MS.gene042559:intron 50.0%
GCAACCACGAACTTCGATCA+AGG - chr6.3:21435474-21435493 None:intergenic 50.0%
GCAAGCAAGTGAATTGTCGG+TGG + chr6.3:21436882-21436901 MS.gene042559:CDS 50.0%
GCAAGTGAATTGTCGGTGGT+CGG + chr6.3:21436886-21436905 MS.gene042559:CDS 50.0%
GCACTAGCCATAAAAGAGCC+AGG - chr6.3:21437875-21437894 None:intergenic 50.0%
GCGAGTTCGAGCTGAAATTG+CGG + chr6.3:21435702-21435721 MS.gene042559:CDS 50.0%
GCTGAGAACAAAGCTGTTGG+TGG + chr6.3:21436846-21436865 MS.gene042559:CDS 50.0%
GGAGCTGGTTATTGAGAGGA+AGG + chr6.3:21435744-21435763 MS.gene042559:CDS 50.0%
GGGGTTCTGTCAAGCGAAAT+AGG - chr6.3:21438756-21438775 None:intergenic 50.0%
GTATACGGGCGCATTAAGGT+AGG + chr6.3:21437008-21437027 MS.gene042559:intron 50.0%
GTTTGGACCTTCGGTTTCGT+TGG + chr6.3:21436707-21436726 MS.gene042559:intron 50.0%
TAAAAGAGCCAGGCTGCACT+AGG - chr6.3:21437865-21437884 None:intergenic 50.0%
TACCAACGTGACTACCAACG+AGG - chr6.3:21435630-21435649 None:intergenic 50.0%
TACTACGGAGATTTGGGTCC+AGG + chr6.3:21435561-21435580 MS.gene042559:CDS 50.0%
TGAAGCACGTGACGATGGAA+AGG + chr6.3:21437967-21437986 MS.gene042559:intron 50.0%
TGATGAACATGTGGGTCTGC+AGG - chr6.3:21437497-21437516 None:intergenic 50.0%
TGCATGGAGAATTGAGGAGG+GGG + chr6.3:21438821-21438840 MS.gene042559:intron 50.0%
TTTGCTGAAGCACGTGACGA+TGG + chr6.3:21437962-21437981 MS.gene042559:intron 50.0%
! AGGGGTGTAACGGTTAGGTT+TGG + chr6.3:21435838-21435857 MS.gene042559:intron 50.0%
! AGTAAGGCCGGCTTCTTGAA+TGG - chr6.3:21438571-21438590 None:intergenic 50.0%
! ATCATGCCTAGGGGTGTAAG+CGG - chr6.3:21436744-21436763 None:intergenic 50.0%
! CCACTGGTAGTGTCTTCCAT+AGG - chr6.3:21437131-21437150 None:intergenic 50.0%
! GAGAACAAAGCTGTTGGTGG+AGG + chr6.3:21436849-21436868 MS.gene042559:CDS 50.0%
! TTGCCTTGTTGGTCGAGTGA+TGG + chr6.3:21435309-21435328 MS.gene042559:CDS 50.0%
!! AGTGCAGCCTGGCTCTTTTA+TGG + chr6.3:21437865-21437884 MS.gene042559:CDS 50.0%
!! CGGTTTGGTTCGGTTTGGAT+TGG + chr6.3:21435964-21435983 MS.gene042559:intron 50.0%
!! GAGGAGGTGCAGAAGCATTA+TGG + chr6.3:21437276-21437295 MS.gene042559:intron 50.0%
!! GTTTGGTGTGGTTGATGGCT+AGG + chr6.3:21436379-21436398 MS.gene042559:intron 50.0%
!! TTCTAAGGTTGGTGGCAGCA+AGG + chr6.3:21437343-21437362 MS.gene042559:intron 50.0%
!!! CTTGTCTTTTTTGGCGGCTC+TGG - chr6.3:21437786-21437805 None:intergenic 50.0%
AAGAAGCTAGCCGACAGCAG+GGG + chr6.3:21437398-21437417 MS.gene042559:intron 55.0%
AAGAAGTCAGCCGTAGGGCT+TGG + chr6.3:21438355-21438374 MS.gene042559:intron 55.0%
AGCACGTGACGATGGAAAGG+AGG + chr6.3:21437970-21437989 MS.gene042559:intron 55.0%
AGCGGAAGGGATGAACGAGA+AGG + chr6.3:21437232-21437251 MS.gene042559:intron 55.0%
ATGTGGGTCTGCAGGCTGAT+GGG - chr6.3:21437489-21437508 None:intergenic 55.0%
ATTGCAGCCATCCAGCAGCA+TGG + chr6.3:21437809-21437828 MS.gene042559:CDS 55.0%
CACGTGACGATGGAAAGGAG+GGG + chr6.3:21437972-21437991 MS.gene042559:intron 55.0%
CAGTCGCAACGAAGAAGGAG+CGG + chr6.3:21436923-21436942 MS.gene042559:CDS 55.0%
GAAAAGGTGGATGCCCTCGT+TGG + chr6.3:21435613-21435632 MS.gene042559:CDS 55.0%
GAAAGAAGCTAGCCGACAGC+AGG + chr6.3:21437396-21437415 MS.gene042559:intron 55.0%
GACGTCATGTTGTCTGCAGG+TGG - chr6.3:21437425-21437444 None:intergenic 55.0%
GCACGTGACGATGGAAAGGA+GGG + chr6.3:21437971-21437990 MS.gene042559:intron 55.0%
GCGCGTGGAACAAGAGGATA+AGG + chr6.3:21437371-21437390 MS.gene042559:intron 55.0%
GCTGACGTCATGTTGTCTGC+AGG - chr6.3:21437428-21437447 None:intergenic 55.0%
GGCACCATTACAACAGGAGC+TGG + chr6.3:21435729-21435748 MS.gene042559:CDS 55.0%
GGCCGACGGTGATGAACAAT+TGG + chr6.3:21436357-21436376 MS.gene042559:intron 55.0%
GGTGGTCGGAGCAAAAAGTC+CGG + chr6.3:21436900-21436919 MS.gene042559:CDS 55.0%
GTAGTCCGAGATAGCTGGGT+CGG + chr6.3:21438852-21438871 MS.gene042559:intron 55.0%
TAGTCCGAGATAGCTGGGTC+GGG + chr6.3:21438853-21438872 MS.gene042559:intron 55.0%
TCCTTCTTCGTTGCGACTGC+CGG - chr6.3:21436922-21436941 None:intergenic 55.0%
TCGAGCTGAAATTGCGGTGG+AGG + chr6.3:21435708-21435727 MS.gene042559:CDS 55.0%
TGGGGGACAAGACTGATGCT+TGG - chr6.3:21437694-21437713 None:intergenic 55.0%
TTAGGCCCAGCTTCCTCTTG+AGG - chr6.3:21437923-21437942 None:intergenic 55.0%
TTGAGGCCCACCATCTCTAC+TGG - chr6.3:21437906-21437925 None:intergenic 55.0%
TTGCAGCCATCCAGCAGCAT+GGG + chr6.3:21437810-21437829 MS.gene042559:CDS 55.0%
! ACGGAACGGGCTTAGTGAGA+TGG + chr6.3:21437090-21437109 MS.gene042559:CDS 55.0%
! AGCTGTTGGTGGAGGCAACA+AGG + chr6.3:21436857-21436876 MS.gene042559:CDS 55.0%
! GAACGGGCTTAGTGAGATGG+TGG + chr6.3:21437093-21437112 MS.gene042559:CDS 55.0%
!! GGGCTTAGTGAGATGGTGGA+CGG + chr6.3:21437097-21437116 MS.gene042559:CDS 55.0%
!! GGTGGAGGCACCATTACAAC+AGG + chr6.3:21435723-21435742 MS.gene042559:CDS 55.0%
!! GTGAGATGGTGGACGGAGAT+CGG + chr6.3:21437104-21437123 MS.gene042559:CDS 55.0%
!! TAGAGATGGTGGGCCTCAAG+AGG + chr6.3:21437907-21437926 MS.gene042559:CDS 55.0%
!!! CTTTTTTGGCGGCTCTGGCT+CGG - chr6.3:21437781-21437800 None:intergenic 55.0%
CACTCCCGACCCAGCTATCT+CGG - chr6.3:21438860-21438879 None:intergenic 60.0%
CATGTGGGTCTGCAGGCTGA+TGG - chr6.3:21437490-21437509 None:intergenic 60.0%
CGCGCAGGTTTCCTAAGCCT+CGG - chr6.3:21438104-21438123 None:intergenic 60.0%
GATGTGGCGCGTGGAACAAG+AGG + chr6.3:21437365-21437384 MS.gene042559:intron 60.0%
GCTCGTAACCTAGTGCAGCC+TGG + chr6.3:21437854-21437873 MS.gene042559:CDS 60.0%
GCTTGGAACTGCCGAGGCTT+AGG + chr6.3:21438090-21438109 MS.gene042559:intron 60.0%
GTGGACGGAGATCGGTCCTA+TGG + chr6.3:21437112-21437131 MS.gene042559:CDS 60.0%
GTGGGCCTCAAGAGGAAGCT+GGG + chr6.3:21437915-21437934 MS.gene042559:CDS 60.0%
GTGGGGCCAGTAGAGATGGT+GGG + chr6.3:21437897-21437916 MS.gene042559:CDS 60.0%
TCCGAACCGCTTACACCCCT+AGG + chr6.3:21436735-21436754 MS.gene042559:intron 60.0%
TCCGGCAGTCGCAACGAAGA+AGG + chr6.3:21436918-21436937 MS.gene042559:CDS 60.0%
! AGGCGAGGCTCGGTCCTATT+TGG + chr6.3:21435362-21435381 MS.gene042559:CDS 60.0%
! GCCTAGGGGTGTAAGCGGTT+CGG - chr6.3:21436739-21436758 None:intergenic 60.0%
! GGCGAGGCTCGGTCCTATTT+GGG + chr6.3:21435363-21435382 MS.gene042559:CDS 60.0%
!! GCCCTCGTTGGTAGTCACGT+TGG + chr6.3:21435625-21435644 MS.gene042559:CDS 60.0%
!! GGTTGGTGGCAGCAAGGATG+TGG + chr6.3:21437349-21437368 MS.gene042559:intron 60.0%
AACGGTGGGACCTGGTCGCT+AGG + chr6.3:21438042-21438061 MS.gene042559:intron 65.0%
ACGATCGTAGCGGTGGCCGA+CGG + chr6.3:21436343-21436362 MS.gene042559:intron 65.0%
CAGTGGGGCCCCCTAAGAAG+AGG + chr6.3:21437145-21437164 MS.gene042559:CDS 65.0%
CGGCTTCCCATGCTGCTGGA+TGG - chr6.3:21437819-21437838 None:intergenic 65.0%
CGTGGGGCCAGTAGAGATGG+TGG + chr6.3:21437896-21437915 MS.gene042559:CDS 65.0%
CTCTTCTTAGGGGGCCCCAC+TGG - chr6.3:21437147-21437166 None:intergenic 65.0%
GCACGTGGGGCCAGTAGAGA+TGG + chr6.3:21437893-21437912 MS.gene042559:CDS 65.0%
GCTACGTTGGAGGCGAGGCT+CGG + chr6.3:21435352-21435371 MS.gene042559:CDS 65.0%
GGAGGGCCACTAGACCCAAC+TGG + chr6.3:21438523-21438542 MS.gene042559:intron 65.0%
GGTGGGCCTCAAGAGGAAGC+TGG + chr6.3:21437914-21437933 MS.gene042559:CDS 65.0%
! GATAGCTGGGTCGGGAGTGC+AGG + chr6.3:21438861-21438880 MS.gene042559:intron 65.0%
!! CGAGCTATGGCTGGCTTGCG+CGG - chr6.3:21437839-21437858 None:intergenic 65.0%
GGCAGCAAGGATGTGGCGCG+TGG + chr6.3:21437356-21437375 MS.gene042559:intron 70.0%
TGCAGGTGGGCCCCTGCTGT+CGG - chr6.3:21437411-21437430 None:intergenic 70.0%
TGCGCGGCTTCCCATGCTGC+TGG - chr6.3:21437823-21437842 None:intergenic 70.0%
!! TTGGCGGCTCTGGCTCGGCT+TGG - chr6.3:21437776-21437795 None:intergenic 70.0%
TCTCGGCGGGCCTAGCGACC+AGG - chr6.3:21438055-21438074 None:intergenic 75.0%
!! CGGCTCTGGCTCGGCTTGGC+TGG - chr6.3:21437772-21437791 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 21435229 21438940 21435229 ID=MS.gene042559
chr6.3 mRNA 21435229 21438940 21435229 ID=MS.gene042559.t1;Parent=MS.gene042559
chr6.3 exon 21435229 21435769 21435229 ID=MS.gene042559.t1.exon1;Parent=MS.gene042559.t1
chr6.3 CDS 21435229 21435769 21435229 ID=cds.MS.gene042559.t1;Parent=MS.gene042559.t1
chr6.3 exon 21436788 21437007 21436788 ID=MS.gene042559.t1.exon2;Parent=MS.gene042559.t1
chr6.3 CDS 21436788 21437007 21436788 ID=cds.MS.gene042559.t1;Parent=MS.gene042559.t1
chr6.3 exon 21437090 21437207 21437090 ID=MS.gene042559.t1.exon3;Parent=MS.gene042559.t1
chr6.3 CDS 21437090 21437207 21437090 ID=cds.MS.gene042559.t1;Parent=MS.gene042559.t1
chr6.3 exon 21437647 21437948 21437647 ID=MS.gene042559.t1.exon4;Parent=MS.gene042559.t1
chr6.3 CDS 21437647 21437948 21437647 ID=cds.MS.gene042559.t1;Parent=MS.gene042559.t1
chr6.3 exon 21438919 21438940 21438919 ID=MS.gene042559.t1.exon5;Parent=MS.gene042559.t1
chr6.3 CDS 21438919 21438940 21438919 ID=cds.MS.gene042559.t1;Parent=MS.gene042559.t1
Gene Sequence

>MS.gene042559

ATGGAGAGACTTAACATCAATGGTGATCATGGTGTTGCATCCAAAAGGCCGAATTTCACTCAGGCTGAATTGCTTGATCTTTGCCTTGTTGGTCGAGTGATGGTTAACAAACCCATTCATTTAGCTACGTTGGAGGCGAGGCTCGGTCCTATTTGGGAGCCTAAGTATCAAATGACGTTGATCCTCATGGAAGACAACAAGTTTATGGTTCAGCTGTATTCAAAGGCAGACCTGTCCAGAATCCTTGATCGAAGTTCGTGGTTGCTCGATAAAAATATGATCATTCTGAAAAAAGTTGCTGTTGGAGAGGATCCTATGACGCTGCCTATGAATACTACGGAGATTTGGGTCCAGGTACATCAATTGCCTTTTGGATTCATGGATGAAAAGGTGGATGCCCTCGTTGGTAGTCACGTTGGTAAAATGATTAGGTTCGATGAGGAAAAAAACTACGGGCCGTGGCGGAAGTTTATGCGAGTTCGAGCTGAAATTGCGGTGGAGGCACCATTACAACAGGAGCTGGTTATTGAGAGGAAGGAAGGTGAAAACATTAAACTTGTTTTCAAGTATGAGAAATTGGGAAAGTTTTGTTTTGTGTGTGGCATGATTAGGGGTGTAACGGTTAGGTTTGGATTGGTTTTCAGTTAAAAAAATGTCCGAACCGATGAAATCTTCATCGGTTCGGATTGGTTCGGTTTTCACTATTTTTCAAAAAAGAAACCGAACCAAACTAATCGGTTTGGTTCGGTTTGGATTGGTTCGGTTGATCGGTTTGTTTAATAATACAATTAAAAAAAAATACATATTCTCACAAAAATATTTCATAGAACTTTGTATAATTGTATTTCATATTTTGTTTTTTCATGTTCTCTATTTTTCAAACAACTTTTCATAACCAACCTTACTCAATATTTCATACATATGATCCAAAATTCATTCATCCATCATCCTTCAAAAACAACTTCATCAAACTTAAATATTTCAATTATCCATGATACATCCATGCATCATTCATCAACAAACACAAAAATTCCAAAAAGCACATCCTAAAATTAAAACATAGTCAAAATAACAAATCAATGGCATAAACATGATAAAACTAACCAAGAGATAAACGATCGTAGCGGTGGCCGACGGTGATGAACAATTGGTTTGGTGTGGTTGATGGCTAGGGTTTATTTTTTAGTAGAAATGAAAGAGTCTGATTGATGAGATGAGATGAAGATAATGATGAGAGAAAGTGAATGGATTAAAAAATATTTTATGTTGGACTTTAATTTTGGGATTAACCATCAGTTTGTGTGAGGTATGATAATATTAGTAAACTAAGGAGTGGGGTTATCATCGGATTGGTTCATCGGTTTCACGGATCTCGAAATGAAAAACCATGAACCAAACCAAACTAGATCGGTTTTGATTGGTTCGGATCGGTTTCAAACCAAACCAAACAAGGTCGGATATTTTTTCGGTTTGGTTCGGTTTGGACCTTCGGTTTCGTTGGTTTAGTCCGAACCGCTTACACCCCTAGGCATGATAGGTCACTCAGAAAACTTTTGTAGTGACAAGTTTGAATCTGCTTCATCAAGCAGTGAGAAGAGATGGGGTTCATATCTCAAAGCTGAGAACAAAGCTGTTGGTGGAGGCAACAAGGAAGCAAGCAAGTGAATTGTCGGTGGTCGGAGCAAAAAGTCCGGCAGTCGCAACGAAGAAGGAGCGGCCATCAATGACATTCAAAGTCATTCATTGGCATTCAATGGGAATGGAATTTCAAATCACAAGGTATACGGGCGCATTAAGGTAGGTATTAATGCAGAGACAAGAGCTTTAACTTTCTTTAAATATATGGAATGTCAAAGATCAGACGGAACGGGCTTAGTGAGATGGTGGACGGAGATCGGTCCTATGGAAGACACTACCAGTGGGGCCCCCTAAGAAGAGGTCAAAACCCGTGCAAAAGTGTTTGCTCCAAACCTTACAAAGTCTGACCAGGTCAACAAAGTATTAGCGGAAGGGATGAACGAGAAGGATGAGTTTCTTTATGCTAATGGAGGAGGTGCAGAAGCATTATGGAAGTTGATATATTTAGAGGCCCAACAAAATGGAAGCCCATAATGTTCTAAGGTTGGTGGCAGCAAGGATGTGGCGCGTGGAACAAGAGGATAAGGTGGAAAGAAGCTAGCCGACAGCAGGGGCCCACCTGCAGACAACATGACGTCAGCACACAAAAAGCAAGGTCAACTAGTACTTTTTGACGGGTCCCATCAGCCTGCAGACCCACATGTTCATCAATAATCATTGAAATCATTATTGCCTCAATCATCAGCAATTAAGATGCCTGCAAGTGCATACAGAAAATTGTTTTCAAAGGAGACAGCACCAATAAATGTCTCTTTCAATGCTAATAATGTTGTTTTTCAGGTTCAAAAAGTGGACAACTTTCAGCATTTATTGCCTAATGATGACCAAGCATCAGTCTTGTCCCCCATGTTTAAAGCTGCTGATTACCATGCAGAATTTGTCTCAACAAGAGACAGCTCAAGCCAGCCAAGCCGAGCCAGAGCCGCCAAAAAAGACAAGGGAATTGCAGCCATCCAGCAGCATGGGAAGCCGCGCAAGCCAGCCATAGCTCGTAACCTAGTGCAGCCTGGCTCTTTTATGGCTAGTGCACGTGGGGCCAGTAGAGATGGTGGGCCTCAAGAGGAAGCTGGGCCTAAGAAAAGGTCTAGAACAGAATTTGCTGAAGCACGTGACGATGGAAAGGAGGGGCAGAAAACAATGACTGCCATAGATAATCTAATTTTTGAAAAAAATGAAACGGTGGGACCTGGTCGCTAGGCCCGCCGAGACCAATGAGTATTATAGCTTGGAACTGCCGAGGCTTAGGAAACCTGCGCGTAATTCCTAAAATCAAATTCCTTGTTCGGTTTTATAAACCGGATATCCTTTTTCTTTGTGAAACTATTATTGAAGCTAATAAAATTGAGGAATTTCGTTATTTATTGGGTTATGATTCTTGTTTTGCACCTGTTAGAAATAGTTGAGGTGGTGGTATTGCTTTGTTTTGGCAAAATACAGTTAACTGTAGTATTGTTAATTATTCAACTAACCATATTAGTGCTAAAAATGAAGAAGTCAGCCGTAGGGCTTGGATATTCACAGGATTTTATGGTTTTCCAGAAATAGGAAGAATAAGAGATTCTTGGAACTTTATTAGTGGGTTGGCTAGACAAATAAATCTACCTTGGTGTCTAATGGGAGATTTTAACGATATACTCCATGCTGATGAGAAAAAAGGGAGGGCCACTAGACCCAACTGGCTTATTAGAGGATTTCGAGAAGCCATTCAAGAAGCCGGCCTTACTGATGTTCACATGGAGGGGTATCCTTTTACTTGGTTTAAAAGTTTGGGAACTCCACGTGCAGTAGAAGAAAAGTTAGATCGTGCCTTGGTTACTAACTCTTGGATGCAATTATTTCAAAATGCCAAATTAGAAAACCTTGTTGTTCCTTCATAAGATTATTTTCCTATTTCGCTTGACAGAACCCCGACAGCTCGAAGTAATAGAGTTGAAAGGTCCTTCAAGTTTGAAAATGCATGGAGAATTGAGGAGGGGGTGAATGATGTAGTCCGAGATAGCTGGGTCGGGAGTGCAGGAAGCAATGTTATTAATAAATTATAAAATTGTACAGAAAATCTAACGCACTGGAGTAA
Protein sequence

>MS.gene042559.t1

MERLNINGDHGVASKRPNFTQAELLDLCLVGRVMVNKPIHLATLEARLGPIWEPKYQMTLILMEDNKFMVQLYSKADLSRILDRSSWLLDKNMIILKKVAVGEDPMTLPMNTTEIWVQVHQLPFGFMDEKVDALVGSHVGKMIRFDEEKNYGPWRKFMRVRAEIAVEAPLQQELVIERKEVTSLNLLHQAVRRDGVHISKLRTKLLVEATRKQASELSVVGAKSPAVATKKERPSMTFKVIHWHSMGMEFQITRRNGLSEMVDGDRSYGRHYQWGPLRRGQNPCKSVCSKPYKVQKVDNFQHLLPNDDQASVLSPMFKAADYHAEFVSTRDSSSQPSRARAAKKDKGIAAIQQHGKPRKPAIARNLVQPGSFMASARGASRDGGPQEEAGPKKRKSNALE