AlfalfaGEDB | MS.gene024405

M. sativa cultivar XinJiangDaYe / MS.gene024405

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024405.t1	AES70414.1	69.3	290	60	4	1	277	1	274	1.00E-101	380.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024405.t1	G7J017	69.3	290	60	4	1	277	1	274	7.5e-102	380.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene65471	MS.gene024405	PPI
MS.gene061850	MS.gene024405	PPI
MS.gene024405	MS.gene51799	PPI
MS.gene024405	MS.gene98471	PPI
MS.gene024405	MS.gene40469	PPI
MS.gene98616	MS.gene024405	PPI
MS.gene024405	MS.gene025987	PPI
MS.gene024405	MS.gene043140	PPI
MS.gene042027	MS.gene024405	PPI
MS.gene69490	MS.gene024405	PPI
MS.gene024405	MS.gene03149	PPI
MS.gene015248	MS.gene024405	PPI
MS.gene024405	MS.gene29321	PPI
MS.gene44083	MS.gene024405	PPI
MS.gene013193	MS.gene024405	PPI
MS.gene08106	MS.gene024405	PPI
MS.gene024405	MS.gene037049	PPI
MS.gene024405	MS.gene24278	PPI
MS.gene024405	MS.gene34618	PPI
MS.gene024405	MS.gene59460	PPI
MS.gene23521	MS.gene024405	PPI
MS.gene024405	MS.gene060773	PPI
MS.gene024405	MS.gene66650	PPI
MS.gene024405	MS.gene009121	PPI
MS.gene024405	MS.gene08713	PPI
MS.gene024405	MS.gene70932	PPI
MS.gene87529	MS.gene024405	PPI
MS.gene012748	MS.gene024405	PPI
MS.gene04134	MS.gene024405	PPI
MS.gene024405	MS.gene24070	PPI
MS.gene83979	MS.gene024405	PPI
MS.gene062067	MS.gene024405	PPI
MS.gene024405	MS.gene73261	PPI
MS.gene024405	MS.gene85538	PPI
MS.gene024405	MS.gene26844	PPI
MS.gene024405	MS.gene64178	PPI
MS.gene024405	MS.gene055546	PPI
MS.gene57044	MS.gene024405	PPI
MS.gene024405	MS.gene96174	PPI
MS.gene024405	MS.gene074257	PPI
MS.gene038676	MS.gene024405	PPI
MS.gene024405	MS.gene073573	PPI
MS.gene024405	MS.gene28718	PPI
MS.gene024405	MS.gene44144	PPI
MS.gene024405	MS.gene05576	PPI
MS.gene042651	MS.gene024405	PPI
MS.gene024405	MS.gene060718	PPI
MS.gene024405	MS.gene63743	PPI
MS.gene024405	MS.gene48477	PPI
MS.gene024405	MS.gene068629	PPI
MS.gene024405	MS.gene027169	PPI
MS.gene024405	MS.gene004417	PPI
MS.gene024405	MS.gene019177	PPI
MS.gene64130	MS.gene024405	PPI
MS.gene024405	MS.gene21066	PPI
MS.gene024405	MS.gene055560	PPI
MS.gene024405	MS.gene009213	PPI
MS.gene024405	MS.gene98127	PPI
MS.gene024405	MS.gene003264	PPI
MS.gene024405	MS.gene054652	PPI
MS.gene20246	MS.gene024405	PPI
MS.gene024405	MS.gene000634	PPI
MS.gene071784	MS.gene024405	PPI
MS.gene071320	MS.gene024405	PPI
MS.gene024405	MS.gene27329	PPI
MS.gene024405	MS.gene41393	PPI
MS.gene024405	MS.gene80362	PPI
MS.gene024405	MS.gene89815	PPI
MS.gene024405	MS.gene016632	PPI
MS.gene024405	MS.gene018474	PPI
MS.gene024405	MS.gene048088	PPI
MS.gene024405	MS.gene86868	PPI
MS.gene042559	MS.gene024405	PPI
MS.gene22200	MS.gene024405	PPI
MS.gene024405	MS.gene058889	PPI
MS.gene024405	MS.gene96163	PPI
MS.gene26038	MS.gene024405	PPI
MS.gene85308	MS.gene024405	PPI
MS.gene031967	MS.gene024405	PPI
MS.gene34812	MS.gene024405	PPI
MS.gene024405	MS.gene34463	PPI
MS.gene02896	MS.gene024405	PPI
MS.gene063214	MS.gene024405	PPI
MS.gene024405	MS.gene042614	PPI
MS.gene024405	MS.gene026680	PPI
MS.gene024405	MS.gene61499	PPI
MS.gene024405	MS.gene51804	PPI
MS.gene067340	MS.gene024405	PPI
MS.gene65623	MS.gene024405	PPI
MS.gene024405	MS.gene019165	PPI
MS.gene024405	MS.gene81194	PPI
MS.gene69495	MS.gene024405	PPI
MS.gene049512	MS.gene024405	PPI
MS.gene038623	MS.gene024405	PPI
MS.gene024405	MS.gene038394	PPI
MS.gene05357	MS.gene024405	PPI
MS.gene024405	MS.gene019001	PPI
MS.gene032311	MS.gene024405	PPI
MS.gene024405	MS.gene53904	PPI
MS.gene86849	MS.gene024405	PPI
MS.gene024405	MS.gene025675	PPI
MS.gene024405	MS.gene71637	PPI
MS.gene024405	MS.gene55209	PPI
MS.gene39956	MS.gene024405	PPI
MS.gene021968	MS.gene024405	PPI
MS.gene09589	MS.gene024405	PPI
MS.gene024405	MS.gene022929	PPI
MS.gene43393	MS.gene024405	PPI
MS.gene024405	MS.gene52349	PPI
MS.gene024405	MS.gene009781	PPI
MS.gene024405	MS.gene021647	PPI
MS.gene005120	MS.gene024405	PPI
MS.gene024405	MS.gene048342	PPI
MS.gene024405	MS.gene069624	PPI
MS.gene048072	MS.gene024405	PPI
MS.gene060386	MS.gene024405	PPI
MS.gene71588	MS.gene024405	PPI
MS.gene024405	MS.gene013890	PPI
MS.gene024405	MS.gene073582	PPI
MS.gene04749	MS.gene024405	PPI
MS.gene05436	MS.gene024405	PPI
MS.gene024405	MS.gene016719	PPI
MS.gene024405	MS.gene028714	PPI
MS.gene059736	MS.gene024405	PPI
MS.gene024405	MS.gene042027	PPI
MS.gene024405	MS.gene048706	PPI
MS.gene70932	MS.gene024405	PPI
MS.gene024405	MS.gene69586	PPI
MS.gene024405	MS.gene45083	PPI
MS.gene024405	MS.gene049561	PPI
MS.gene024405	MS.gene008658	PPI
MS.gene42903	MS.gene024405	PPI
MS.gene81712	MS.gene024405	PPI
MS.gene024405	MS.gene49057	PPI
MS.gene021965	MS.gene024405	PPI
MS.gene055683	MS.gene024405	PPI
MS.gene042614	MS.gene024405	PPI
MS.gene024405	MS.gene03936	PPI
MS.gene021555	MS.gene024405	PPI
MS.gene048747	MS.gene024405	PPI
MS.gene024405	MS.gene08708	PPI
MS.gene024405	MS.gene86275	PPI
MS.gene024405	MS.gene034643	PPI
MS.gene009121	MS.gene024405	PPI
MS.gene94654	MS.gene024405	PPI
MS.gene024405	MS.gene071320	PPI
MS.gene024405	MS.gene012889	PPI
MS.gene024405	MS.gene038757	PPI
MS.gene024405	MS.gene000506	PPI
MS.gene97410	MS.gene024405	PPI
MS.gene83772	MS.gene024405	PPI
MS.gene32415	MS.gene024405	PPI
MS.gene024405	MS.gene39956	PPI
MS.gene035626	MS.gene024405	PPI
MS.gene008927	MS.gene024405	PPI
MS.gene045614	MS.gene024405	PPI
MS.gene024405	MS.gene028716	PPI
MS.gene024405	MS.gene74639	PPI
MS.gene024405	MS.gene071133	PPI
MS.gene024405	MS.gene60266	PPI
MS.gene024405	MS.gene98467	PPI
MS.gene024405	MS.gene013644	PPI
MS.gene63762	MS.gene024405	PPI
MS.gene024405	MS.gene024522	PPI
MS.gene024405	MS.gene54051	PPI
MS.gene024405	MS.gene22111	PPI
MS.gene71675	MS.gene024405	PPI
MS.gene30208	MS.gene024405	PPI
MS.gene024405	MS.gene049610	PPI
MS.gene024405	MS.gene010290	PPI
MS.gene024405	MS.gene37955	PPI
MS.gene024405	MS.gene92517	PPI
MS.gene013676	MS.gene024405	PPI
MS.gene024405	MS.gene045875	PPI
MS.gene024405	MS.gene010890	PPI
MS.gene024405	MS.gene84790	PPI
MS.gene024405	MS.gene061579	PPI
MS.gene030090	MS.gene024405	PPI
MS.gene95561	MS.gene024405	PPI
MS.gene96174	MS.gene024405	PPI
MS.gene018196	MS.gene024405	PPI
MS.gene065627	MS.gene024405	PPI
MS.gene024405	MS.gene41979	PPI
MS.gene57019	MS.gene024405	PPI
MS.gene024405	MS.gene04970	PPI
MS.gene018745	MS.gene024405	PPI
MS.gene65546	MS.gene024405	PPI
MS.gene024405	MS.gene060788	PPI
MS.gene024405	MS.gene43924	PPI
MS.gene024405	MS.gene41643	PPI
MS.gene024405	MS.gene77990	PPI
MS.gene024405	MS.gene65546	PPI
MS.gene038098	MS.gene024405	PPI
MS.gene024405	MS.gene062511	PPI
MS.gene024405	MS.gene027994	PPI
MS.gene60059	MS.gene024405	PPI
MS.gene024405	MS.gene26433	PPI
MS.gene024405	MS.gene007022	PPI
MS.gene024405	MS.gene69584	PPI
MS.gene34197	MS.gene024405	PPI
MS.gene008275	MS.gene024405	PPI
MS.gene024405	MS.gene76420	PPI
MS.gene024405	MS.gene46353	PPI
MS.gene064966	MS.gene024405	PPI
MS.gene024405	MS.gene61651	PPI
MS.gene024405	MS.gene29406	PPI
MS.gene024405	MS.gene09023	PPI
MS.gene024405	MS.gene88393	PPI
MS.gene046089	MS.gene024405	PPI
MS.gene024405	MS.gene054508	PPI
MS.gene047954	MS.gene024405	PPI
MS.gene35175	MS.gene024405	PPI
MS.gene036423	MS.gene024405	PPI
MS.gene024405	MS.gene95960	PPI
MS.gene024405	MS.gene053373	PPI
MS.gene024405	MS.gene041264	PPI
MS.gene024405	MS.gene63150	PPI
MS.gene72520	MS.gene024405	PPI
MS.gene024405	MS.gene072852	PPI
MS.gene66651	MS.gene024405	PPI
MS.gene96109	MS.gene024405	PPI
MS.gene024405	MS.gene65474	PPI
MS.gene024405	MS.gene025401	PPI
MS.gene024405	MS.gene015093	PPI
MS.gene35202	MS.gene024405	PPI
MS.gene051449	MS.gene024405	PPI
MS.gene024405	MS.gene06164	PPI
MS.gene024405	MS.gene50392	PPI
MS.gene63743	MS.gene024405	PPI
MS.gene024405	MS.gene22730	PPI
MS.gene024405	MS.gene000379	PPI
MS.gene024405	MS.gene032299	PPI
MS.gene024405	MS.gene017586	PPI
MS.gene024405	MS.gene037634	PPI
MS.gene024405	MS.gene057828	PPI
MS.gene024405	MS.gene08606	PPI
MS.gene024405	MS.gene000640	PPI
MS.gene30136	MS.gene024405	PPI
MS.gene024405	MS.gene09517	PPI
MS.gene008861	MS.gene024405	PPI
MS.gene024405	MS.gene98756	PPI
MS.gene024405	MS.gene87845	PPI
MS.gene61452	MS.gene024405	PPI
MS.gene024405	MS.gene85308	PPI
MS.gene016102	MS.gene024405	PPI
MS.gene46941	MS.gene024405	PPI
MS.gene96541	MS.gene024405	PPI
MS.gene024405	MS.gene64130	PPI
MS.gene000634	MS.gene024405	PPI
MS.gene024405	MS.gene62249	PPI
MS.gene024405	MS.gene58419	PPI
MS.gene85295	MS.gene024405	PPI
MS.gene47792	MS.gene024405	PPI
MS.gene46948	MS.gene024405	PPI
MS.gene025873	MS.gene024405	PPI
MS.gene012019	MS.gene024405	PPI
MS.gene024405	MS.gene021555	PPI
MS.gene024405	MS.gene36069	PPI
MS.gene05358	MS.gene024405	PPI
MS.gene024405	MS.gene044729	PPI
MS.gene93396	MS.gene024405	PPI
MS.gene024405	MS.gene60390	PPI
MS.gene05231	MS.gene024405	PPI
MS.gene024405	MS.gene039692	PPI
MS.gene024405	MS.gene55682	PPI
MS.gene024405	MS.gene002590	PPI
MS.gene024405	MS.gene81712	PPI
MS.gene010656	MS.gene024405	PPI
MS.gene000629	MS.gene024405	PPI
MS.gene41979	MS.gene024405	PPI
MS.gene024405	MS.gene005120	PPI
MS.gene05319	MS.gene024405	PPI
MS.gene56991	MS.gene024405	PPI
MS.gene050679	MS.gene024405	PPI
MS.gene024405	MS.gene024297	PPI
MS.gene024405	MS.gene059269	PPI
MS.gene024405	MS.gene057934	PPI
MS.gene055223	MS.gene024405	PPI
MS.gene024405	MS.gene37537	PPI
MS.gene024405	MS.gene024841	PPI
MS.gene28545	MS.gene024405	PPI
MS.gene024405	MS.gene069786	PPI
MS.gene053747	MS.gene024405	PPI
MS.gene024405	MS.gene42010	PPI
MS.gene024405	MS.gene025158	PPI
MS.gene024405	MS.gene40828	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024405.t1	MTR_3g053920	68.136	295	67	4	1	283	1	280	6.64e-131	375
MS.gene024405.t1	MTR_2g061500	85.271	129	19	0	1	129	1	129	1.96e-78	236
MS.gene024405.t1	MTR_4g103530	61.307	199	56	6	55	250	1	181	2.96e-73	225
MS.gene024405.t1	MTR_8g463110	70.248	121	36	0	226	346	1	121	2.09e-39	147
MS.gene024405.t1	MTR_7g011710	68.235	85	27	0	55	139	1	85	1.67e-35	127
MS.gene024405.t1	MTR_0010s0370	36.872	179	99	6	8	177	4	177	1.20e-31	117
MS.gene024405.t1	MTR_0010s0350	36.872	179	99	6	8	177	4	177	1.20e-31	117
MS.gene024405.t1	MTR_6g033215	32.704	159	105	1	31	187	124	282	1.98e-28	112
MS.gene024405.t1	MTR_1g036720	31.068	103	71	0	11	113	9	111	3.75e-12	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 106 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACTGAATCACATTGATTTC+TGG	0.138202	7.2:-572163	MS.gene024405:CDS
TCGAGAACAGCAACGGTTTC+TGG	0.167681	7.2:+572434	None:intergenic
CATCGACCTTGTGGTGAAAT+TGG	0.244441	7.2:+572279	None:intergenic
AGACATACGCTCACTGAAAT+AGG	0.256666	7.2:+572364	None:intergenic
ACGACTATCATAAGACTTAA+AGG	0.281382	7.2:+572067	None:intergenic
TGGCTCAGATGCGAGGTTTA+TGG	0.281706	7.2:+572454	None:intergenic
GTCTGACGGTGAATTTGTGC+TGG	0.326563	7.2:-571496	MS.gene024405:CDS
TTTGTGCTGGGTTTGGCTGC+TGG	0.328076	7.2:-571483	MS.gene024405:CDS
GTGATTCAGTGGGACAAAAC+TGG	0.330797	7.2:+572175	None:intergenic
CGGTGAATTTGTGCTGGGTT+TGG	0.347218	7.2:-571490	MS.gene024405:CDS
GTTCTCGAACATTGCCTAAT+CGG	0.366703	7.2:-572419	MS.gene024405:CDS
ACTGAATCACATTGATTTCT+GGG	0.367380	7.2:-572162	MS.gene024405:CDS
GATGAGGGAAACATTGTAAT+AGG	0.368014	7.2:-571342	MS.gene024405:CDS
CTCTTACCTTCTTCCTCAAC+AGG	0.368499	7.2:-571540	MS.gene024405:CDS
CGTGGTACTGAAGCAGGAAT+AGG	0.371280	7.2:+571753	None:intergenic
ACCATCGATGTTAAGGTTGT+TGG	0.386606	7.2:+572502	None:intergenic
CAAGTCCACGGTTTACCCTT+TGG	0.387847	7.2:-572137	MS.gene024405:CDS
TACCTTGACCTACTTTCTGT+TGG	0.393464	7.2:+572108	None:intergenic
AGGTGCTAGTGGTTCTTGTC+AGG	0.398289	7.2:-571568	MS.gene024405:CDS
GTAATTGTAACTTTCTTGCC+TGG	0.398943	7.2:+572329	None:intergenic
CAGCAAGGACACGACCGATT+AGG	0.408317	7.2:+572405	None:intergenic
GTTTAGCCTTTGCAGCAACT+TGG	0.414818	7.2:+571598	None:intergenic
CCTTGTGGTGAAATTGGAAT+AGG	0.425107	7.2:+572285	None:intergenic
CCATCGATGTTAAGGTTGTT+GGG	0.431832	7.2:+572503	None:intergenic
GTTAAGGTTGTTGGGATCCA+TGG	0.436099	7.2:+572511	None:intergenic
ACAAAACTGGGTACGACACC+AGG	0.437274	7.2:+572188	None:intergenic
AGGTCAGACCATCGATGTTA+AGG	0.439277	7.2:+572495	None:intergenic
CACGCCATTCTTGTTTCAAA+GGG	0.439548	7.2:+571991	None:intergenic
GCAAAGGCTAAACACGGTTC+AGG	0.440363	7.2:-571588	MS.gene024405:CDS
TAGTAACGGTTCCTTTGTTA+CGG	0.443190	7.2:-571961	MS.gene024405:intron
GCTGGTCCGTTTCTTAATGC+TGG	0.447601	7.2:-571465	MS.gene024405:CDS
ATCATTCTGTCGTTGAAACT+TGG	0.449924	7.2:+571669	None:intergenic
ATGTCTCGTGCTTGGAAGCC+AGG	0.453399	7.2:-572347	MS.gene024405:CDS
CAGAAAGTAGGTCAAGGTAT+AGG	0.453798	7.2:-572104	MS.gene024405:CDS
CTGGTTCCGATTTGAAGAAA+AGG	0.462538	7.2:-571419	MS.gene024405:CDS
CGCTGCCCAAGTTGCTGCAA+AGG	0.467656	7.2:-571604	MS.gene024405:CDS
GGTTAAACCCTCCTCTGATA+AGG	0.475559	7.2:+572475	None:intergenic
TTCTGTTGGATGAAACCAAA+GGG	0.480894	7.2:+572122	None:intergenic
GAATCATCATTTGCTGCTGA+TGG	0.486408	7.2:-571366	MS.gene024405:CDS
TCTGACGGTGAATTTGTGCT+GGG	0.491645	7.2:-571495	MS.gene024405:CDS
CTGTCCCTTTGAAACAAGAA+TGG	0.493273	7.2:-571995	MS.gene024405:CDS
GTGGTACTGAAGCAGGAATA+GGG	0.493715	7.2:+571754	None:intergenic
TTATAGCAGTTAATTGACTC+TGG	0.497479	7.2:+571640	None:intergenic
ACACGCCATTCTTGTTTCAA+AGG	0.498805	7.2:+571990	None:intergenic
CAGAAATCAATGTGATTCAG+TGG	0.501051	7.2:+572164	None:intergenic
AAGGATGCTGTTGTTCCTGC+TGG	0.502485	7.2:-571723	MS.gene024405:CDS
AATCATCATTTGCTGCTGAT+GGG	0.504180	7.2:-571365	MS.gene024405:CDS
AAATGCAACAGATGGTGGTC+AGG	0.508197	7.2:-571697	MS.gene024405:CDS
ACTTTCATATTGTCATGGAC+CGG	0.511440	7.2:-572217	MS.gene024405:CDS
ACCGTCAGACAGCAAGTTTG+AGG	0.513455	7.2:+571509	None:intergenic
GGTTTCATCCAACAGAAAGT+AGG	0.516836	7.2:-572116	MS.gene024405:CDS
ATGATTCTTCACCATTCTGA+AGG	0.517798	7.2:+571382	None:intergenic
TAGGTACAAATGTTAGTCAT+GGG	0.524354	7.2:-571323	MS.gene024405:CDS
ATTTGCTGCTGATGGGGATG+AGG	0.526943	7.2:-571358	MS.gene024405:CDS
GAAGAAAAGGAAGAGAATGT+TGG	0.533755	7.2:-571406	MS.gene024405:CDS
TTTAGCCTTTGCAGCAACTT+GGG	0.536452	7.2:+571599	None:intergenic
GTGAGCGTATGTCTCGTGCT+TGG	0.540385	7.2:-572355	MS.gene024405:CDS
GCCTCAAACTTGCTGTCTGA+CGG	0.540508	7.2:-571510	MS.gene024405:CDS
CAAAGGGACAGTAACATCAA+TGG	0.541078	7.2:+572007	None:intergenic
GATTTCTGGGTGCAAGTCCA+CGG	0.545064	7.2:-572149	MS.gene024405:CDS
CGGTTTCTGGCTCAGATGCG+AGG	0.545071	7.2:+572447	None:intergenic
GCTGCACGCATCTTTGATGA+AGG	0.547191	7.2:-572257	MS.gene024405:CDS
GAAAGTTATCATACAGCCAC+AGG	0.549896	7.2:+572234	None:intergenic
ATAGGTACAAATGTTAGTCA+TGG	0.550331	7.2:-571324	MS.gene024405:CDS
TGATAACTTTCATATTGTCA+TGG	0.552037	7.2:-572222	MS.gene024405:CDS
TGGCGTGTCCGTGCTAGTAA+CGG	0.557920	7.2:-571975	MS.gene024405:CDS
GTGTGTCGTGGTACTGAAGC+AGG	0.559588	7.2:+571747	None:intergenic
GTACGACACCAGGGGCAATC+CGG	0.560950	7.2:+572198	None:intergenic
GTCATGGACCGGATTGCCCC+TGG	0.563027	7.2:-572206	MS.gene024405:CDS
GAATTACCTGTTGAGGAAGA+AGG	0.564877	7.2:+571534	None:intergenic
TCTGTTGCATTTCGACCAGC+AGG	0.566046	7.2:+571708	None:intergenic
TGATTCAGTGGGACAAAACT+GGG	0.566580	7.2:+572176	None:intergenic
CCTATTCCAATTTCACCACA+AGG	0.568495	7.2:-572285	MS.gene024405:CDS
TCACAGCCAGCATTAAGAAA+CGG	0.571104	7.2:+571459	None:intergenic
CCCAACAACCTTAACATCGA+TGG	0.575183	7.2:-572503	MS.gene024405:CDS
TGAGGCTGAATTACCTGTTG+AGG	0.590417	7.2:+571527	None:intergenic
CAAAGGAACCGTTACTAGCA+CGG	0.590633	7.2:+571967	None:intergenic
AGAATGTTGGCCCTTCAGAA+TGG	0.594097	7.2:-571393	MS.gene024405:CDS
GAATACGCATATAAGAGCTA+TGG	0.602257	7.2:+572036	None:intergenic
TGGTCTGACCTTATCAGAGG+AGG	0.603900	7.2:-572483	MS.gene024405:CDS
GGTCTGACCTTATCAGAGGA+GGG	0.610448	7.2:-572482	MS.gene024405:CDS
ATTGAATTTCGCGATCAGCA+AGG	0.610992	7.2:+572390	None:intergenic
ATCATCATTTGCTGCTGATG+GGG	0.612968	7.2:-571364	MS.gene024405:CDS
TTCAGTACCACGACACACAA+AGG	0.613295	7.2:-571742	MS.gene024405:CDS
TTTGCTGCTGATGGGGATGA+GGG	0.615655	7.2:-571357	MS.gene024405:CDS
TTTAAAAGTAACCGTAACAA+AGG	0.615879	7.2:+571950	None:intergenic
ATCCAACAGAAAGTAGGTCA+AGG	0.616872	7.2:-572110	MS.gene024405:CDS
TGATTCTTCACCATTCTGAA+GGG	0.621952	7.2:+571383	None:intergenic
GCAATGTTCGAGAACAGCAA+CGG	0.623043	7.2:+572427	None:intergenic
AGGTACAAATGTTAGTCATG+GGG	0.624100	7.2:-571322	MS.gene024405:CDS
GGTACAAATGTTAGTCATGG+GGG	0.629053	7.2:-571321	MS.gene024405:CDS
AAACACGGTTCAGGTGCTAG+TGG	0.636490	7.2:-571579	MS.gene024405:CDS
CAAAACTGGGTACGACACCA+GGG	0.636645	7.2:+572189	None:intergenic
CGATGGTCTGACCTTATCAG+AGG	0.640340	7.2:-572486	MS.gene024405:CDS
AGAAATCAATGTGATTCAGT+GGG	0.641223	7.2:+572165	None:intergenic
TTTCTGTTGGATGAAACCAA+AGG	0.643348	7.2:+572121	None:intergenic
ACAGCATCCTTTGTGTGTCG+TGG	0.648542	7.2:+571735	None:intergenic
GCATCTTTGATGAAGGCCTG+TGG	0.653746	7.2:-572250	MS.gene024405:CDS
GTTTCTTAATGCTGGCTGTG+AGG	0.660341	7.2:-571457	MS.gene024405:CDS
GCTGGTCGAAATGCAACAGA+TGG	0.671483	7.2:-571705	MS.gene024405:CDS
GGTCGAAATGCAACAGATGG+TGG	0.674246	7.2:-571702	MS.gene024405:CDS
GTACAAATGTTAGTCATGGG+GGG	0.677618	7.2:-571320	MS.gene024405:CDS
AAAACTGGGTACGACACCAG+GGG	0.705794	7.2:+572190	None:intergenic
GTTGCTGCAAAGGCTAAACA+CGG	0.713576	7.2:-571594	MS.gene024405:CDS
TGAAACCAAAGGGTAAACCG+TGG	0.718993	7.2:+572132	None:intergenic
TGCGTGCAGCATCGACCTTG+TGG	0.727439	7.2:+572270	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ACTTTTAAATATGAAAAGCT+GGG	-	chr7.2:571881-571900	MS.gene024405:intron	20.0%
!!!	TACTTTTAAATATGAAAAGC+TGG	-	chr7.2:571880-571899	MS.gene024405:intron	20.0%
!	TGATAACTTTCATATTGTCA+TGG	-	chr7.2:571595-571614	MS.gene024405:CDS	25.0%
!	TTTAAAAGTAACCGTAACAA+AGG	+	chr7.2:571870-571889	None:intergenic	25.0%
	ACGACTATCATAAGACTTAA+AGG	+	chr7.2:571753-571772	None:intergenic	30.0%
	AGAAATCAATGTGATTCAGT+GGG	+	chr7.2:571655-571674	None:intergenic	30.0%
	ATAGGTACAAATGTTAGTCA+TGG	-	chr7.2:572493-572512	MS.gene024405:CDS	30.0%
	TAGGTACAAATGTTAGTCAT+GGG	-	chr7.2:572494-572513	MS.gene024405:CDS	30.0%
!	TCTCTTCCTTTTCTTCAAAT+CGG	+	chr7.2:572407-572426	None:intergenic	30.0%
!	TTATAGCAGTTAATTGACTC+TGG	+	chr7.2:572180-572199	None:intergenic	30.0%
!!	ACTGAATCACATTGATTTCT+GGG	-	chr7.2:571655-571674	MS.gene024405:CDS	30.0%
	ACTTTCATATTGTCATGGAC+CGG	-	chr7.2:571600-571619	MS.gene024405:CDS	35.0%
	AGGTACAAATGTTAGTCATG+GGG	-	chr7.2:572495-572514	MS.gene024405:CDS	35.0%
	ATCATTCTGTCGTTGAAACT+TGG	+	chr7.2:572151-572170	None:intergenic	35.0%
	ATGATTCTTCACCATTCTGA+AGG	+	chr7.2:572438-572457	None:intergenic	35.0%
	ATTCCAGCTCAAACAATTCT+GGG	+	chr7.2:571955-571974	None:intergenic	35.0%
	CAGAAATCAATGTGATTCAG+TGG	+	chr7.2:571656-571675	None:intergenic	35.0%
	GAAGAAAAGGAAGAGAATGT+TGG	-	chr7.2:572411-572430	MS.gene024405:CDS	35.0%
	GAATACGCATATAAGAGCTA+TGG	+	chr7.2:571784-571803	None:intergenic	35.0%
	GATGAGGGAAACATTGTAAT+AGG	-	chr7.2:572475-572494	MS.gene024405:CDS	35.0%
	GTAATTGTAACTTTCTTGCC+TGG	+	chr7.2:571491-571510	None:intergenic	35.0%
	TAGTAACGGTTCCTTTGTTA+CGG	-	chr7.2:571856-571875	MS.gene024405:intron	35.0%
	TGATTCTTCACCATTCTGAA+GGG	+	chr7.2:572437-572456	None:intergenic	35.0%
	TTCTGTTGGATGAAACCAAA+GGG	+	chr7.2:571698-571717	None:intergenic	35.0%
	TTTCTGTTGGATGAAACCAA+AGG	+	chr7.2:571699-571718	None:intergenic	35.0%
!	AATCATCATTTGCTGCTGAT+GGG	-	chr7.2:572452-572471	MS.gene024405:CDS	35.0%
!	CAAGGTATAGGTAGCTTTTT+AGG	-	chr7.2:571725-571744	MS.gene024405:CDS	35.0%
!!	CACTGAATCACATTGATTTC+TGG	-	chr7.2:571654-571673	MS.gene024405:CDS	35.0%
	AAGCCAGTTACTCAAAGGAT+AGG	-	chr7.2:572010-572029	MS.gene024405:CDS	40.0%
	ACCATCGATGTTAAGGTTGT+TGG	+	chr7.2:571318-571337	None:intergenic	40.0%
	ACCTTAAGCCAGTTACTCAA+AGG	-	chr7.2:572005-572024	MS.gene024405:CDS	40.0%
	AGACATACGCTCACTGAAAT+AGG	+	chr7.2:571456-571475	None:intergenic	40.0%
	ATCCAACAGAAAGTAGGTCA+AGG	-	chr7.2:571707-571726	MS.gene024405:CDS	40.0%
	ATTGAATTTCGCGATCAGCA+AGG	+	chr7.2:571430-571449	None:intergenic	40.0%
	CAAAGGGACAGTAACATCAA+TGG	+	chr7.2:571813-571832	None:intergenic	40.0%
	CAGAAAGTAGGTCAAGGTAT+AGG	-	chr7.2:571713-571732	MS.gene024405:CDS	40.0%
	CCATCGATGTTAAGGTTGTT+GGG	+	chr7.2:571317-571336	None:intergenic	40.0%
	CCTATTCCAATTTCACCACA+AGG	-	chr7.2:571532-571551	MS.gene024405:CDS	40.0%
	CCTTGTGGTGAAATTGGAAT+AGG	+	chr7.2:571535-571554	None:intergenic	40.0%
	GAAAGTTATCATACAGCCAC+AGG	+	chr7.2:571586-571605	None:intergenic	40.0%
	GAACCTATCCTTTGAGTAAC+TGG	+	chr7.2:572016-572035	None:intergenic	40.0%
	GAATTACCTGTTGAGGAAGA+AGG	+	chr7.2:572286-572305	None:intergenic	40.0%
	GATTCCAGCTCAAACAATTC+TGG	+	chr7.2:571956-571975	None:intergenic	40.0%
	GGTACAAATGTTAGTCATGG+GGG	-	chr7.2:572496-572515	MS.gene024405:CDS	40.0%
	GGTTTCATCCAACAGAAAGT+AGG	-	chr7.2:571701-571720	MS.gene024405:CDS	40.0%
	GTACAAATGTTAGTCATGGG+GGG	-	chr7.2:572497-572516	MS.gene024405:CDS	40.0%
	GTTCTCGAACATTGCCTAAT+CGG	-	chr7.2:571398-571417	MS.gene024405:CDS	40.0%
	TACCTTGACCTACTTTCTGT+TGG	+	chr7.2:571712-571731	None:intergenic	40.0%
	TCACAGCCAGCATTAAGAAA+CGG	+	chr7.2:572361-572380	None:intergenic	40.0%
	TGATTCAGTGGGACAAAACT+GGG	+	chr7.2:571644-571663	None:intergenic	40.0%
	TTTGAGCTGGAATCTGATGA+CGG	-	chr7.2:571962-571981	MS.gene024405:CDS	40.0%
!	ACACGCCATTCTTGTTTCAA+AGG	+	chr7.2:571830-571849	None:intergenic	40.0%
!	ATCATCATTTGCTGCTGATG+GGG	-	chr7.2:572453-572472	MS.gene024405:CDS	40.0%
!	CACGCCATTCTTGTTTCAAA+GGG	+	chr7.2:571829-571848	None:intergenic	40.0%
!	CTGGTTCCGATTTGAAGAAA+AGG	-	chr7.2:572398-572417	MS.gene024405:CDS	40.0%
!	GAATCATCATTTGCTGCTGA+TGG	-	chr7.2:572451-572470	MS.gene024405:CDS	40.0%
!	GAGGAGTCTCATGATTTTAC+TGG	-	chr7.2:572379-572398	MS.gene024405:CDS	40.0%
!	GATGACGGTGTTCGTAATTA+GGG	-	chr7.2:571977-571996	MS.gene024405:CDS	40.0%
!	TCCTTTGAGTAACTGGCTTA+AGG	+	chr7.2:572009-572028	None:intergenic	40.0%
!	TTGAGTAACTGGCTTAAGGT+AGG	+	chr7.2:572005-572024	None:intergenic	40.0%
!	TTTAGCCTTTGCAGCAACTT+GGG	+	chr7.2:572221-572240	None:intergenic	40.0%
!!	CTGTCCCTTTGAAACAAGAA+TGG	-	chr7.2:571822-571841	MS.gene024405:intron	40.0%
!!	TGATGACGGTGTTCGTAATT+AGG	-	chr7.2:571976-571995	MS.gene024405:CDS	40.0%
	AGAATGTTGGCCCTTCAGAA+TGG	-	chr7.2:572424-572443	MS.gene024405:CDS	45.0%
	AGGTCAGACCATCGATGTTA+AGG	+	chr7.2:571325-571344	None:intergenic	45.0%
	CAAAGGAACCGTTACTAGCA+CGG	+	chr7.2:571853-571872	None:intergenic	45.0%
	CATCGACCTTGTGGTGAAAT+TGG	+	chr7.2:571541-571560	None:intergenic	45.0%
	CCCAACAACCTTAACATCGA+TGG	-	chr7.2:571314-571333	MS.gene024405:CDS	45.0%
	CTCTTACCTTCTTCCTCAAC+AGG	-	chr7.2:572277-572296	MS.gene024405:CDS	45.0%
	GCAATGTTCGAGAACAGCAA+CGG	+	chr7.2:571393-571412	None:intergenic	45.0%
	GGTTAAACCCTCCTCTGATA+AGG	+	chr7.2:571345-571364	None:intergenic	45.0%
	GTGATTCAGTGGGACAAAAC+TGG	+	chr7.2:571645-571664	None:intergenic	45.0%
	GTTGCTGCAAAGGCTAAACA+CGG	-	chr7.2:572223-572242	MS.gene024405:CDS	45.0%
	TCTGACGGTGAATTTGTGCT+GGG	-	chr7.2:572322-572341	MS.gene024405:CDS	45.0%
	TGAAACCAAAGGGTAAACCG+TGG	+	chr7.2:571688-571707	None:intergenic	45.0%
	TGAGGCTGAATTACCTGTTG+AGG	+	chr7.2:572293-572312	None:intergenic	45.0%
	TTCAGTACCACGACACACAA+AGG	-	chr7.2:572075-572094	MS.gene024405:CDS	45.0%
!	AAATGCAACAGATGGTGGTC+AGG	-	chr7.2:572120-572139	MS.gene024405:CDS	45.0%
!	GTGGTACTGAAGCAGGAATA+GGG	+	chr7.2:572066-572085	None:intergenic	45.0%
!	GTTTAGCCTTTGCAGCAACT+TGG	+	chr7.2:572222-572241	None:intergenic	45.0%
!	GTTTCTTAATGCTGGCTGTG+AGG	-	chr7.2:572360-572379	MS.gene024405:CDS	45.0%
!!!	AGCTGGGTGTTTTTTGTCAC+AGG	-	chr7.2:571897-571916	MS.gene024405:intron	45.0%
!!!	GGTGTTTTTTGTCACAGGTG+CGG	-	chr7.2:571902-571921	MS.gene024405:intron	45.0%
	AAAACTGGGTACGACACCAG+GGG	+	chr7.2:571630-571649	None:intergenic	50.0%
	AAACACGGTTCAGGTGCTAG+TGG	-	chr7.2:572238-572257	MS.gene024405:CDS	50.0%
	AAGGATGCTGTTGTTCCTGC+TGG	-	chr7.2:572094-572113	MS.gene024405:CDS	50.0%
	ACAAAACTGGGTACGACACC+AGG	+	chr7.2:571632-571651	None:intergenic	50.0%
	ACAGCATCCTTTGTGTGTCG+TGG	+	chr7.2:572085-572104	None:intergenic	50.0%
	ACCGTCAGACAGCAAGTTTG+AGG	+	chr7.2:572311-572330	None:intergenic	50.0%
	AGGTGCTAGTGGTTCTTGTC+AGG	-	chr7.2:572249-572268	MS.gene024405:CDS	50.0%
	CAAAACTGGGTACGACACCA+GGG	+	chr7.2:571631-571650	None:intergenic	50.0%
	CAAGTCCACGGTTTACCCTT+TGG	-	chr7.2:571680-571699	MS.gene024405:CDS	50.0%
	CGATGGTCTGACCTTATCAG+AGG	-	chr7.2:571331-571350	MS.gene024405:CDS	50.0%
	CGGTGAATTTGTGCTGGGTT+TGG	-	chr7.2:572327-572346	MS.gene024405:CDS	50.0%
	GCAAAGGCTAAACACGGTTC+AGG	-	chr7.2:572229-572248	MS.gene024405:CDS	50.0%
	GCATCTTTGATGAAGGCCTG+TGG	-	chr7.2:571567-571586	MS.gene024405:CDS	50.0%
	GCTGCACGCATCTTTGATGA+AGG	-	chr7.2:571560-571579	MS.gene024405:CDS	50.0%
	GCTGGTCCGTTTCTTAATGC+TGG	-	chr7.2:572352-572371	MS.gene024405:CDS	50.0%
	GCTGGTCGAAATGCAACAGA+TGG	-	chr7.2:572112-572131	MS.gene024405:CDS	50.0%
	GGTCGAAATGCAACAGATGG+TGG	-	chr7.2:572115-572134	MS.gene024405:CDS	50.0%
	GGTCTGACCTTATCAGAGGA+GGG	-	chr7.2:571335-571354	MS.gene024405:CDS	50.0%
	GTCTGACGGTGAATTTGTGC+TGG	-	chr7.2:572321-572340	MS.gene024405:CDS	50.0%
	GTGCCCAGAATTGTTTGAGC+TGG	-	chr7.2:571949-571968	MS.gene024405:intron	50.0%
	GTTCTGCTGCAACCAACTGA+TGG	-	chr7.2:572032-572051	MS.gene024405:CDS	50.0%
	TCGAGAACAGCAACGGTTTC+TGG	+	chr7.2:571386-571405	None:intergenic	50.0%
	TCTGTTGCATTTCGACCAGC+AGG	+	chr7.2:572112-572131	None:intergenic	50.0%
	TGCAACCAACTGATGGCTAC+AGG	-	chr7.2:572039-572058	MS.gene024405:CDS	50.0%
	TGGCTCAGATGCGAGGTTTA+TGG	+	chr7.2:571366-571385	None:intergenic	50.0%
	TGGTCTGACCTTATCAGAGG+AGG	-	chr7.2:571334-571353	MS.gene024405:CDS	50.0%
	TTTGCTGCTGATGGGGATGA+GGG	-	chr7.2:572460-572479	MS.gene024405:CDS	50.0%
!	ATTTGCTGCTGATGGGGATG+AGG	-	chr7.2:572459-572478	MS.gene024405:CDS	50.0%
!	CGTGGTACTGAAGCAGGAAT+AGG	+	chr7.2:572067-572086	None:intergenic	50.0%
!	GATTTCTGGGTGCAAGTCCA+CGG	-	chr7.2:571668-571687	MS.gene024405:CDS	50.0%
!!	GCCTCAAACTTGCTGTCTGA+CGG	-	chr7.2:572307-572326	MS.gene024405:CDS	50.0%
	AGGGTCCTGTAGCCATCAGT+TGG	+	chr7.2:572047-572066	None:intergenic	55.0%
	ATGTCTCGTGCTTGGAAGCC+AGG	-	chr7.2:571470-571489	MS.gene024405:CDS	55.0%
	CAGCAAGGACACGACCGATT+AGG	+	chr7.2:571415-571434	None:intergenic	55.0%
	GTGAGCGTATGTCTCGTGCT+TGG	-	chr7.2:571462-571481	MS.gene024405:CDS	55.0%
	TGGCGTGTCCGTGCTAGTAA+CGG	-	chr7.2:571842-571861	MS.gene024405:intron	55.0%
	TGTCACAGGTGCGGTCTGTT+GGG	-	chr7.2:571911-571930	MS.gene024405:intron	55.0%
	TTGTCACAGGTGCGGTCTGT+TGG	-	chr7.2:571910-571929	MS.gene024405:intron	55.0%
	TTTGTGCTGGGTTTGGCTGC+TGG	-	chr7.2:572334-572353	MS.gene024405:CDS	55.0%
!	GTGTGTCGTGGTACTGAAGC+AGG	+	chr7.2:572073-572092	None:intergenic	55.0%
	CGCTGCCCAAGTTGCTGCAA+AGG	-	chr7.2:572213-572232	MS.gene024405:CDS	60.0%
	GTACGACACCAGGGGCAATC+CGG	+	chr7.2:571622-571641	None:intergenic	60.0%
!!	CGGTTTCTGGCTCAGATGCG+AGG	+	chr7.2:571373-571392	None:intergenic	60.0%
!!	TGCGTGCAGCATCGACCTTG+TGG	+	chr7.2:571550-571569	None:intergenic	60.0%
	GTCATGGACCGGATTGCCCC+TGG	-	chr7.2:571611-571630	MS.gene024405:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	571308	572531	571308	ID=MS.gene024405
chr7.2	mRNA	571308	572531	571308	ID=MS.gene024405.t1;Parent=MS.gene024405
chr7.2	exon	571962	572531	571962	ID=MS.gene024405.t1.exon1;Parent=MS.gene024405.t1
chr7.2	CDS	571962	572531	571962	ID=cds.MS.gene024405.t1;Parent=MS.gene024405.t1
chr7.2	exon	571308	571778	571308	ID=MS.gene024405.t1.exon2;Parent=MS.gene024405.t1
chr7.2	CDS	571308	571778	571308	ID=cds.MS.gene024405.t1;Parent=MS.gene024405.t1

Gene Sequence

>MS.gene024405

ATGGATCCCAACAACCTTAACATCGATGGTCTGACCTTATCAGAGGAGGGTTTAACCATAAACCTCGCATCTGAGCCAGAAACCGTTGCTGTTCTCGAACATTGCCTAATCGGTCGTGTCCTTGCTGATCGCGAAATTCAATTCGCCTATTTCAGTGAGCGTATGTCTCGTGCTTGGAAGCCAGGCAAGAAAGTTACAATTACTAAGTCTGTGTCTGATCGTTACCTATTCCAATTTCACCACAAGGTCGATGCTGCACGCATCTTTGATGAAGGCCTGTGGCTGTATGATAACTTTCATATTGTCATGGACCGGATTGCCCCTGGTGTCGTACCCAGTTTTGTCCCACTGAATCACATTGATTTCTGGGTGCAAGTCCACGGTTTACCCTTTGGTTTCATCCAACAGAAAGTAGGTCAAGGTATAGGTAGCTTTTTAGGTACCTTTAAGTCTTATGATAGTCGTAACTCAATCCATAGCTCTTATATGCGTATTCGTGTTGCCATTGATGTTACTGTCCCTTTGAAACAAGAATGGCGTGTCCGTGCTAGTAACGGTTCCTTTGTTACGGTTACTTTTAAATATGAAAAGCTGGGTGTTTTTTGTCACAGGTGCGGTCTGTTGGGACATACTGACAAAGTGTGCCCAGAATTGTTTGAGCTGGAATCTGATGACGGTGTTCGTAATTAGGGCGCCTACCTTAAGCCAGTTACTCAAAGGATAGGTTCTGCTGCAACCAACTGATGGCTACAGGACCCTATTCCTGCTTCAGTACCACGACACACAAAGGATGCTGTTGTTCCTGCTGGTCGAAATGCAACAGATGGTGGTCAGGTTGTACCAAGTTTCAACGACAGAATGATTGCTGTCCAGAGTCAATTAACTGCTATAAAACATGATGTTCTCGCTGCCCAAGTTGCTGCAAAGGCTAAACACGGTTCAGGTGCTAGTGGTTCTTGTCAGGTGCATCTCTTACCTTCTTCCTCAACAGGTAATTCAGCCTCAAACTTGCTGTCTGACGGTGAATTTGTGCTGGGTTTGGCTGCTGGTCCGTTTCTTAATGCTGGCTGTGAGGAGTCTCATGATTTTACTGGTTCCGATTTGAAGAAAAGGAAGAGAATGTTGGCCCTTCAGAATGGTGAAGAATCATCATTTGCTGCTGATGGGGATGAGGGAAACATTGTAATAGGTACAAATGTTAGTCATGGGGGGATGTTGAAATGA

Protein sequence

>MS.gene024405.t1

MDPNNLNIDGLTLSEEGLTINLASEPETVAVLEHCLIGRVLADREIQFAYFSERMSRAWKPGKKVTITKSVSDRYLFQFHHKVDAARIFDEGLWLYDNFHIVMDRIAPGVVPSFVPLNHIDFWVQVHGLPFGFIQQKVGQGIGSFLGTFKSYDSRNSIHSSYMRIRVAIDVTVPLKQEWRVRASNGSFVTDPIPASVPRHTKDAVVPAGRNATDGGQVVPSFNDRMIAVQSQLTAIKHDVLAAQVAAKAKHGSGASGSCQVHLLPSSSTGNSASNLLSDGEFVLGLAAGPFLNAGCEESHDFTGSDLKKRKRMLALQNGEESSFAADGDEGNIVIGTNVSHGGMLK