Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049610.t1 | XP_024630779.1 | 37.8 | 331 | 87 | 4 | 1 | 216 | 1 | 327 | 3.50E-46 | 195.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049610.t1 | A0A396JIW9 | 35.3 | 357 | 112 | 4 | 1 | 242 | 1 | 353 | 1.2e-40 | 176.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049610.t1 | MTR_1g036710 | 65.823 | 158 | 21 | 3 | 63 | 218 | 36 | 162 | 1.77e-59 | 190 |
| MS.gene049610.t1 | MTR_1g036720 | 91.429 | 70 | 6 | 0 | 1 | 70 | 1 | 70 | 4.82e-41 | 137 |
| MS.gene049610.t1 | MTR_0010s0370 | 67.143 | 70 | 23 | 0 | 1 | 70 | 1 | 70 | 2.46e-25 | 99.0 |
| MS.gene049610.t1 | MTR_0010s0350 | 67.143 | 70 | 23 | 0 | 1 | 70 | 1 | 70 | 2.46e-25 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATGATGGTGCCAGATTT+TGG | 0.201559 | 3.2:-59057529 | MS.gene049610:CDS |
| TTTGTTTGGCGCATTAAATT+AGG | 0.271717 | 3.2:+59057347 | None:intergenic |
| ATTTGTGTTGGTAAAGTATC+AGG | 0.291778 | 3.2:+59057815 | None:intergenic |
| ACGGCCAACAAGACGAAGTT+TGG | 0.301030 | 3.2:+59057784 | None:intergenic |
| TAACAAGGGCTCTGTCTATA+CGG | 0.318236 | 3.2:+59056443 | None:intergenic |
| AACTCAGGAGGATCAATTAA+TGG | 0.320545 | 3.2:-59057288 | MS.gene049610:CDS |
| GGAAATTTCTGTGGTATGTT+GGG | 0.332194 | 3.2:-59057593 | MS.gene049610:CDS |
| CAGCTCTGGACCCCAAAATC+TGG | 0.347167 | 3.2:+59057517 | None:intergenic |
| CTGCATTTACCACATTTGTT+TGG | 0.365757 | 3.2:+59057333 | None:intergenic |
| TTGATCTTCTTCATACGCTT+TGG | 0.368445 | 3.2:+59057665 | None:intergenic |
| GATCCCAAACTTCGTCTTGT+TGG | 0.379422 | 3.2:-59057788 | MS.gene049610:CDS |
| TTGACTGTTACCGTTACATT+TGG | 0.384436 | 3.2:+59057403 | None:intergenic |
| TCCTCCTGAGTTTGAGTCAT+AGG | 0.393686 | 3.2:+59057299 | None:intergenic |
| AGCGTTTGGAGAGCAGTGTT+TGG | 0.406534 | 3.2:+59056397 | None:intergenic |
| TTCTTCTCGACGCGCAGCTC+TGG | 0.410195 | 3.2:+59057503 | None:intergenic |
| AGAGGTGTGTGGTCTGATAT+TGG | 0.417440 | 3.2:+59056367 | None:intergenic |
| GCGTTTGGAGAGCAGTGTTT+GGG | 0.417450 | 3.2:+59056398 | None:intergenic |
| TCAATCTTTACATCACGAAC+AGG | 0.422560 | 3.2:+59057698 | None:intergenic |
| AGGAAATTTCTGTGGTATGT+TGG | 0.428896 | 3.2:-59057594 | MS.gene049610:CDS |
| ATATTGGAGCAACTAGCGTT+TGG | 0.430774 | 3.2:+59056383 | None:intergenic |
| TTTCCATCATCATGAAGGTT+CGG | 0.442226 | 3.2:+59057741 | None:intergenic |
| TACTCGGTTGATTCTGATGA+TGG | 0.452614 | 3.2:-59057542 | MS.gene049610:CDS |
| TAGGTCTATTTGTTAGAAAA+CGG | 0.456519 | 3.2:+59057765 | None:intergenic |
| ACAATGGCGGCGATGCTAGC+AGG | 0.470390 | 3.2:-59057475 | MS.gene049610:CDS |
| CGGCCAACAAGACGAAGTTT+GGG | 0.476536 | 3.2:+59057785 | None:intergenic |
| TAACAGATTCATCAAGGTGC+TGG | 0.478529 | 3.2:+59057376 | None:intergenic |
| TATCCGAACCTTCATGATGA+TGG | 0.489229 | 3.2:-59057744 | MS.gene049610:CDS |
| AGCGTATGAAGAAGATCAAA+AGG | 0.507202 | 3.2:-59057661 | MS.gene049610:CDS |
| GAGACGGTGGAGAGAATCCA+TGG | 0.519605 | 3.2:+59057874 | None:intergenic |
| TTGGTGACTGTAACGGCTGC+CGG | 0.523799 | 3.2:+59057422 | None:intergenic |
| TTGGGATCAGCAATTTGTGT+TGG | 0.538800 | 3.2:+59057803 | None:intergenic |
| GTTACATTTGGTGACTGTAA+CGG | 0.544153 | 3.2:+59057415 | None:intergenic |
| CTTCCTCTTCATCACTCAGA+GGG | 0.546420 | 3.2:+59057852 | None:intergenic |
| TACTCCTATGACTCAAACTC+AGG | 0.552407 | 3.2:-59057303 | MS.gene049610:CDS |
| GAAATTTCTGTGGTATGTTG+GGG | 0.557142 | 3.2:-59057592 | MS.gene049610:CDS |
| AACAAGGGCTCTGTCTATAC+GGG | 0.558597 | 3.2:+59056444 | None:intergenic |
| GAGCCCTTGTTACTTCCTCA+TGG | 0.565454 | 3.2:-59056432 | MS.gene049610:CDS |
| TGTTCGTGATGTAAAGATTG+AGG | 0.579612 | 3.2:-59057696 | MS.gene049610:CDS |
| CTTCATCACTCAGAGGGAGA+CGG | 0.580904 | 3.2:+59057858 | None:intergenic |
| TTATTGCAAACAAGACAAAA+CGG | 0.584447 | 3.2:-59057247 | MS.gene049610:intron |
| TCTCCCTCTGAGTGATGAAG+AGG | 0.588229 | 3.2:-59057855 | MS.gene049610:CDS |
| GGATCAAGTTGCAGAAGAAG+AGG | 0.590071 | 3.2:+59056349 | None:intergenic |
| ATGAAGAAGATCAAAAGGCC+AGG | 0.596177 | 3.2:-59057656 | MS.gene049610:CDS |
| AGGGATCACAATTATTGCGC+CGG | 0.596573 | 3.2:-59057441 | MS.gene049610:CDS |
| ATTCTGTAACAGATTCATCA+AGG | 0.597099 | 3.2:+59057370 | None:intergenic |
| ACAACGCTAGACTCACCACC+TGG | 0.602848 | 3.2:+59057638 | None:intergenic |
| GTCGAGAAGAAGCGTAACAA+TGG | 0.620917 | 3.2:-59057491 | MS.gene049610:CDS |
| AAATTTAAGTATGAAAGACT+AGG | 0.621297 | 3.2:-59057614 | MS.gene049610:CDS |
| TTTAATGCGCCAAACAAATG+TGG | 0.621980 | 3.2:-59057342 | MS.gene049610:CDS |
| AGACGGTGGAGAGAATCCAT+GGG | 0.637333 | 3.2:+59057875 | None:intergenic |
| CAATCTTTACATCACGAACA+GGG | 0.638430 | 3.2:+59057699 | None:intergenic |
| TCCTATGACTCAAACTCAGG+AGG | 0.639817 | 3.2:-59057300 | MS.gene049610:CDS |
| AATGTGGTAAATGCAGCAGT+TGG | 0.641890 | 3.2:-59057326 | MS.gene049610:CDS |
| TCTTCCTCTTCATCACTCAG+AGG | 0.651749 | 3.2:+59057851 | None:intergenic |
| GCTAGCAGGATGAGAGACGG+AGG | 0.654906 | 3.2:-59057461 | MS.gene049610:CDS |
| TTGCCATGAGGAAGTAACAA+GGG | 0.658150 | 3.2:+59056429 | None:intergenic |
| GAGAAGAAGCGTAACAATGG+CGG | 0.666423 | 3.2:-59057488 | MS.gene049610:CDS |
| ATCATCATGAAGGTTCGGAT+AGG | 0.667928 | 3.2:+59057746 | None:intergenic |
| GATGCTAGCAGGATGAGAGA+CGG | 0.669304 | 3.2:-59057464 | MS.gene049610:CDS |
| CATCACTCAGAGGGAGACGG+TGG | 0.673729 | 3.2:+59057861 | None:intergenic |
| GTTACAGTCACCAAATGTAA+CGG | 0.675888 | 3.2:-59057413 | MS.gene049610:CDS |
| CTAGCAGGATGAGAGACGGA+GGG | 0.684010 | 3.2:-59057460 | MS.gene049610:CDS |
| GAAAGACTAGGAAATTTCTG+TGG | 0.686198 | 3.2:-59057602 | MS.gene049610:CDS |
| AAGAAGATCAAAAGGCCAGG+TGG | 0.686962 | 3.2:-59057653 | MS.gene049610:CDS |
| TTTGCCATGAGGAAGTAACA+AGG | 0.688242 | 3.2:+59056428 | None:intergenic |
| TGGGAACATACTTTGCCATG+AGG | 0.689804 | 3.2:+59056417 | None:intergenic |
| GTTGCAGAAGAAGAGGTGTG+TGG | 0.713728 | 3.2:+59056356 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATTACTTTCAACTA+AGG | + | chr3.2:59057312-59057331 | None:intergenic | 15.0% |
| !! | AAATAAGTGATAGTCATTTA+CGG | + | chr3.2:59057693-59057712 | None:intergenic | 20.0% |
| !! | AAATTTAAGTATGAAAGACT+AGG | - | chr3.2:59056610-59056629 | MS.gene049610:intron | 20.0% |
| !! | CTGATTTATGTTATACAATT+GGG | - | chr3.2:59057333-59057352 | MS.gene049610:CDS | 20.0% |
| !! | TCTGATTTATGTTATACAAT+TGG | - | chr3.2:59057332-59057351 | MS.gene049610:CDS | 20.0% |
| !!! | AAAGAAGAACTCTTTTTTAT+CGG | - | chr3.2:59057146-59057165 | MS.gene049610:intron | 20.0% |
| !!! | TACTTTTAAACCATGTAAAT+TGG | + | chr3.2:59057736-59057755 | None:intergenic | 20.0% |
| !!! | TTTACATGGTTTAAAAGTAT+CGG | - | chr3.2:59057737-59057756 | MS.gene049610:CDS | 20.0% |
| ! | TGGAAAAAATTGAAACTTTC+TGG | - | chr3.2:59056500-59056519 | MS.gene049610:intron | 25.0% |
| ! | TTATTGCAAACAAGACAAAA+CGG | - | chr3.2:59056977-59056996 | MS.gene049610:intron | 25.0% |
| !! | TAGGTCTATTTGTTAGAAAA+CGG | + | chr3.2:59056462-59056481 | None:intergenic | 25.0% |
| !!! | AATTTTTTCCATCATCATGA+AGG | + | chr3.2:59056491-59056510 | None:intergenic | 25.0% |
| !!! | ATTGATTTTTTTGTGCTGAT+TGG | + | chr3.2:59057102-59057121 | None:intergenic | 25.0% |
| AATGATCCATGGTGTATTAT+TGG | - | chr3.2:59057584-59057603 | MS.gene049610:CDS | 30.0% | |
| ATTCTGTAACAGATTCATCA+AGG | + | chr3.2:59056857-59056876 | None:intergenic | 30.0% | |
| CTACTGTGAAAAACTTTACT+CGG | - | chr3.2:59056666-59056685 | MS.gene049610:intron | 30.0% | |
| CTTCATAAACATGTCTATAC+AGG | - | chr3.2:59057457-59057476 | MS.gene049610:CDS | 30.0% | |
| TTTGTTTGGCGCATTAAATT+AGG | + | chr3.2:59056880-59056899 | None:intergenic | 30.0% | |
| ! | ATTTGTGTTGGTAAAGTATC+AGG | + | chr3.2:59056412-59056431 | None:intergenic | 30.0% |
| ! | CTTTTACGGATATTCTGATT+CGG | - | chr3.2:59057511-59057530 | MS.gene049610:CDS | 30.0% |
| ! | TTTTACGGATATTCTGATTC+GGG | - | chr3.2:59057512-59057531 | MS.gene049610:CDS | 30.0% |
| !! | TTAAAAGTATCGGTACTGAT+GGG | - | chr3.2:59057747-59057766 | MS.gene049610:CDS | 30.0% |
| !! | TTTAAAAGTATCGGTACTGA+TGG | - | chr3.2:59057746-59057765 | MS.gene049610:CDS | 30.0% |
| AAACAAGACAAAACGGTCAA+GGG | - | chr3.2:59056984-59057003 | MS.gene049610:intron | 35.0% | |
| AACTCAGGAGGATCAATTAA+TGG | - | chr3.2:59056936-59056955 | MS.gene049610:intron | 35.0% | |
| AAGTCACCAATAATACACCA+TGG | + | chr3.2:59057593-59057612 | None:intergenic | 35.0% | |
| AGCGTATGAAGAAGATCAAA+AGG | - | chr3.2:59056563-59056582 | MS.gene049610:intron | 35.0% | |
| AGGAAATTTCTGTGGTATGT+TGG | - | chr3.2:59056630-59056649 | MS.gene049610:intron | 35.0% | |
| ATCAGAATATCCGTAAAAGG+CGG | + | chr3.2:59057510-59057529 | None:intergenic | 35.0% | |
| ATGATTGCTTCAGTAGAATG+AGG | + | chr3.2:59057045-59057064 | None:intergenic | 35.0% | |
| CAATCTTTACATCACGAACA+GGG | + | chr3.2:59056528-59056547 | None:intergenic | 35.0% | |
| CGAATCAGAATATCCGTAAA+AGG | + | chr3.2:59057513-59057532 | None:intergenic | 35.0% | |
| CTGCATTTACCACATTTGTT+TGG | + | chr3.2:59056894-59056913 | None:intergenic | 35.0% | |
| GAAAGACTAGGAAATTTCTG+TGG | - | chr3.2:59056622-59056641 | MS.gene049610:intron | 35.0% | |
| GAAATTTCTGTGGTATGTTG+GGG | - | chr3.2:59056632-59056651 | MS.gene049610:intron | 35.0% | |
| GGAAATTTCTGTGGTATGTT+GGG | - | chr3.2:59056631-59056650 | MS.gene049610:intron | 35.0% | |
| GTTACAGTCACCAAATGTAA+CGG | - | chr3.2:59056811-59056830 | MS.gene049610:intron | 35.0% | |
| TCAATCTTTACATCACGAAC+AGG | + | chr3.2:59056529-59056548 | None:intergenic | 35.0% | |
| TGTTCGTGATGTAAAGATTG+AGG | - | chr3.2:59056528-59056547 | MS.gene049610:intron | 35.0% | |
| TGTTGGGTTACCAATTTACA+TGG | - | chr3.2:59057723-59057742 | MS.gene049610:CDS | 35.0% | |
| TTATTTGATATGCCGCTGTT+GGG | - | chr3.2:59057707-59057726 | MS.gene049610:CDS | 35.0% | |
| TTGACTGTTACCGTTACATT+TGG | + | chr3.2:59056824-59056843 | None:intergenic | 35.0% | |
| TTGATCTTCTTCATACGCTT+TGG | + | chr3.2:59056562-59056581 | None:intergenic | 35.0% | |
| TTTAATGCGCCAAACAAATG+TGG | - | chr3.2:59056882-59056901 | MS.gene049610:intron | 35.0% | |
| TTTCCATCATCATGAAGGTT+CGG | + | chr3.2:59056486-59056505 | None:intergenic | 35.0% | |
| ! | CGGATAAGGTCTTTTATAGA+AGG | + | chr3.2:59057254-59057273 | None:intergenic | 35.0% |
| ! | GTTACATTTGGTGACTGTAA+CGG | + | chr3.2:59056812-59056831 | None:intergenic | 35.0% |
| !!! | TTTTTGTGCTGATTGGATTC+TGG | + | chr3.2:59057095-59057114 | None:intergenic | 35.0% |
| AAAATCAATCCCTGCGCAAA+TGG | - | chr3.2:59057113-59057132 | MS.gene049610:intron | 40.0% | |
| AATGTGGTAAATGCAGCAGT+TGG | - | chr3.2:59056898-59056917 | MS.gene049610:intron | 40.0% | |
| AGGGACTTAACTACCAATGA+AGG | - | chr3.2:59057003-59057022 | MS.gene049610:intron | 40.0% | |
| ATATTGGAGCAACTAGCGTT+TGG | + | chr3.2:59057844-59057863 | None:intergenic | 40.0% | |
| ATCATCATGAAGGTTCGGAT+AGG | + | chr3.2:59056481-59056500 | None:intergenic | 40.0% | |
| ATGAAGAAGATCAAAAGGCC+AGG | - | chr3.2:59056568-59056587 | MS.gene049610:intron | 40.0% | |
| CAAACAAGACAAAACGGTCA+AGG | - | chr3.2:59056983-59057002 | MS.gene049610:intron | 40.0% | |
| CAACATCCGATTTATAGACG+CGG | + | chr3.2:59057274-59057293 | None:intergenic | 40.0% | |
| CATTTGACAAACTGCTGAGA+TGG | + | chr3.2:59057568-59057587 | None:intergenic | 40.0% | |
| CCTTATCCGCGTCTATAAAT+CGG | - | chr3.2:59057265-59057284 | MS.gene049610:CDS | 40.0% | |
| CTTATTTGATATGCCGCTGT+TGG | - | chr3.2:59057706-59057725 | MS.gene049610:CDS | 40.0% | |
| GAACTGCCTTAACATTTCCA+AGG | + | chr3.2:59057232-59057251 | None:intergenic | 40.0% | |
| GAGATGATATTCATTGCCCT+CGG | + | chr3.2:59057194-59057213 | None:intergenic | 40.0% | |
| GATTTCAATGTGCCCTTCAT+TGG | + | chr3.2:59057019-59057038 | None:intergenic | 40.0% | |
| GCAGTTTGTCAAATGATCCA+TGG | - | chr3.2:59057573-59057592 | MS.gene049610:CDS | 40.0% | |
| GGGACTTAACTACCAATGAA+GGG | - | chr3.2:59057004-59057023 | MS.gene049610:intron | 40.0% | |
| GGGCAATGAATATCATCTCT+TGG | - | chr3.2:59057195-59057214 | MS.gene049610:intron | 40.0% | |
| TAACAAGGGCTCTGTCTATA+CGG | + | chr3.2:59057784-59057803 | None:intergenic | 40.0% | |
| TAACAGATTCATCAAGGTGC+TGG | + | chr3.2:59056851-59056870 | None:intergenic | 40.0% | |
| TACTCCTATGACTCAAACTC+AGG | - | chr3.2:59056921-59056940 | MS.gene049610:intron | 40.0% | |
| TATCCGAACCTTCATGATGA+TGG | - | chr3.2:59056480-59056499 | MS.gene049610:intron | 40.0% | |
| TTGCCATGAGGAAGTAACAA+GGG | + | chr3.2:59057798-59057817 | None:intergenic | 40.0% | |
| TTGGGATCAGCAATTTGTGT+TGG | + | chr3.2:59056424-59056443 | None:intergenic | 40.0% | |
| TTTGCCATGAGGAAGTAACA+AGG | + | chr3.2:59057799-59057818 | None:intergenic | 40.0% | |
| ! | CTGATTGGATTCTGGTTGTT+AGG | + | chr3.2:59057087-59057106 | None:intergenic | 40.0% |
| ! | GTAAATTGGTAACCCAACAG+CGG | + | chr3.2:59057722-59057741 | None:intergenic | 40.0% |
| ! | TACTCGGTTGATTCTGATGA+TGG | - | chr3.2:59056682-59056701 | MS.gene049610:intron | 40.0% |
| !!! | TGATGATGGTGCCAGATTTT+GGG | - | chr3.2:59056696-59056715 | MS.gene049610:intron | 40.0% |
| AACAAGGGCTCTGTCTATAC+GGG | + | chr3.2:59057783-59057802 | None:intergenic | 45.0% | |
| AAGAAGATCAAAAGGCCAGG+TGG | - | chr3.2:59056571-59056590 | MS.gene049610:intron | 45.0% | |
| AGGGATCACAATTATTGCGC+CGG | - | chr3.2:59056783-59056802 | MS.gene049610:intron | 45.0% | |
| AGTCTCCAATTGCCGTGAAT+GGG | + | chr3.2:59057485-59057504 | None:intergenic | 45.0% | |
| ATCTGTCACCCTCAGACAAA+CGG | - | chr3.2:59057621-59057640 | MS.gene049610:CDS | 45.0% | |
| CACTTCTCTGTTGATCGCAT+TGG | - | chr3.2:59057365-59057384 | MS.gene049610:CDS | 45.0% | |
| CCGATTTATAGACGCGGATA+AGG | + | chr3.2:59057268-59057287 | None:intergenic | 45.0% | |
| CCTTAACATTTCCAAGGCCT+CGG | + | chr3.2:59057226-59057245 | None:intergenic | 45.0% | |
| CTTCCTCTTCATCACTCAGA+GGG | + | chr3.2:59056375-59056394 | None:intergenic | 45.0% | |
| GATCCCAAACTTCGTCTTGT+TGG | - | chr3.2:59056436-59056455 | MS.gene049610:CDS | 45.0% | |
| GTGGAGGTCTAGCTATTCTT+TGG | - | chr3.2:59057393-59057412 | MS.gene049610:CDS | 45.0% | |
| TCCTATGACTCAAACTCAGG+AGG | - | chr3.2:59056924-59056943 | MS.gene049610:intron | 45.0% | |
| TCCTCCTGAGTTTGAGTCAT+AGG | + | chr3.2:59056928-59056947 | None:intergenic | 45.0% | |
| TCTATACAGGACCCCATTCA+CGG | - | chr3.2:59057470-59057489 | MS.gene049610:CDS | 45.0% | |
| TCTTCCTCTTCATCACTCAG+AGG | + | chr3.2:59056376-59056395 | None:intergenic | 45.0% | |
| TGGGAACATACTTTGCCATG+AGG | + | chr3.2:59057810-59057829 | None:intergenic | 45.0% | |
| ! | AGAGGTGTGTGGTCTGATAT+TGG | + | chr3.2:59057860-59057879 | None:intergenic | 45.0% |
| ! | GAGAAGAAGCGTAACAATGG+CGG | - | chr3.2:59056736-59056755 | MS.gene049610:intron | 45.0% |
| ! | GTCGAGAAGAAGCGTAACAA+TGG | - | chr3.2:59056733-59056752 | MS.gene049610:intron | 45.0% |
| !! | GATGATGGTGCCAGATTTTG+GGG | - | chr3.2:59056697-59056716 | MS.gene049610:intron | 45.0% |
| !!! | CTGATGATGGTGCCAGATTT+TGG | - | chr3.2:59056695-59056714 | MS.gene049610:intron | 45.0% |
| !!! | TCTTTTTTATCGGCAGAGCC+TGG | - | chr3.2:59057156-59057175 | MS.gene049610:intron | 45.0% |
| ACAAACTGCTGAGATGGCGA+AGG | + | chr3.2:59057562-59057581 | None:intergenic | 50.0% | |
| ACGGCCAACAAGACGAAGTT+TGG | + | chr3.2:59056443-59056462 | None:intergenic | 50.0% | |
| AGCGTTTGGAGAGCAGTGTT+TGG | + | chr3.2:59057830-59057849 | None:intergenic | 50.0% | |
| ATCATCTCTTGGAACTGCCG+AGG | - | chr3.2:59057206-59057225 | MS.gene049610:intron | 50.0% | |
| CCGAGGCCTTGGAAATGTTA+AGG | - | chr3.2:59057223-59057242 | MS.gene049610:intron | 50.0% | |
| CGGCCAACAAGACGAAGTTT+GGG | + | chr3.2:59056442-59056461 | None:intergenic | 50.0% | |
| CTTCATCACTCAGAGGGAGA+CGG | + | chr3.2:59056369-59056388 | None:intergenic | 50.0% | |
| GAGAAGCTTCCATTTGCGCA+GGG | + | chr3.2:59057125-59057144 | None:intergenic | 50.0% | |
| GAGTCTCCAATTGCCGTGAA+TGG | + | chr3.2:59057486-59057505 | None:intergenic | 50.0% | |
| GATGCTAGCAGGATGAGAGA+CGG | - | chr3.2:59056760-59056779 | MS.gene049610:intron | 50.0% | |
| GCGTTTGGAGAGCAGTGTTT+GGG | + | chr3.2:59057829-59057848 | None:intergenic | 50.0% | |
| GTCTCCAATTGCCGTGAATG+GGG | + | chr3.2:59057484-59057503 | None:intergenic | 50.0% | |
| TCTCCCTCTGAGTGATGAAG+AGG | - | chr3.2:59056369-59056388 | MS.gene049610:CDS | 50.0% | |
| TCTGTCACCCTCAGACAAAC+GGG | - | chr3.2:59057622-59057641 | MS.gene049610:CDS | 50.0% | |
| TCTGTCTATACGGGCTTCCT+TGG | + | chr3.2:59057774-59057793 | None:intergenic | 50.0% | |
| TGAAAACCGCGGATAAGCCA+AGG | + | chr3.2:59057665-59057684 | None:intergenic | 50.0% | |
| TGAGAAGCTTCCATTTGCGC+AGG | + | chr3.2:59057126-59057145 | None:intergenic | 50.0% | |
| TGATATTCATTGCCCTCGGC+AGG | + | chr3.2:59057190-59057209 | None:intergenic | 50.0% | |
| TTACGGCTTCCTGAAAACCG+CGG | + | chr3.2:59057676-59057695 | None:intergenic | 50.0% | |
| ! | CTGGTTGTTAGGTGCTGTCA+TGG | + | chr3.2:59057076-59057095 | None:intergenic | 50.0% |
| ! | GAGCCCTTGTTACTTCCTCA+TGG | - | chr3.2:59057792-59057811 | MS.gene049610:CDS | 50.0% |
| ! | GTTGATCGCATTGGTCGAAG+TGG | - | chr3.2:59057374-59057393 | MS.gene049610:CDS | 50.0% |
| ! | GTTGCAGAAGAAGAGGTGTG+TGG | + | chr3.2:59057871-59057890 | None:intergenic | 50.0% |
| ! | TGGAGACTCACCGCCTTTTA+CGG | - | chr3.2:59057497-59057516 | MS.gene049610:CDS | 50.0% |
| ! | TTGGCTTATCCGCGGTTTTC+AGG | - | chr3.2:59057664-59057683 | MS.gene049610:CDS | 50.0% |
| ! | TTGTTAGGTGCTGTCATGGC+AGG | + | chr3.2:59057072-59057091 | None:intergenic | 50.0% |
| !! | TATCGGTACTGATGGGTCCA+AGG | - | chr3.2:59057754-59057773 | MS.gene049610:CDS | 50.0% |
| AAACCGCGGATAAGCCAAGG+AGG | + | chr3.2:59057662-59057681 | None:intergenic | 55.0% | |
| AACCGCGGATAAGCCAAGGA+GGG | + | chr3.2:59057661-59057680 | None:intergenic | 55.0% | |
| AACTGCTGAGATGGCGAAGG+AGG | + | chr3.2:59057559-59057578 | None:intergenic | 55.0% | |
| ACAACGCTAGACTCACCACC+TGG | + | chr3.2:59056589-59056608 | None:intergenic | 55.0% | |
| AGGACCCCATTCACGGCAAT+TGG | - | chr3.2:59057477-59057496 | MS.gene049610:CDS | 55.0% | |
| CTAGCAGGATGAGAGACGGA+GGG | - | chr3.2:59056764-59056783 | MS.gene049610:intron | 55.0% | |
| CTGTCACCCTCAGACAAACG+GGG | - | chr3.2:59057623-59057642 | MS.gene049610:CDS | 55.0% | |
| GGGAAGACGTCGTGCATCTT+GGG | - | chr3.2:59057532-59057551 | MS.gene049610:CDS | 55.0% | |
| ! | GATCGCATTGGTCGAAGTGG+AGG | - | chr3.2:59057377-59057396 | MS.gene049610:CDS | 55.0% |
| ! | TTGGTGACTGTAACGGCTGC+CGG | + | chr3.2:59056805-59056824 | None:intergenic | 55.0% |
| !! | CAGCTCTGGACCCCAAAATC+TGG | + | chr3.2:59056710-59056729 | None:intergenic | 55.0% |
| ACAATGGCGGCGATGCTAGC+AGG | - | chr3.2:59056749-59056768 | MS.gene049610:intron | 60.0% | |
| ATAAGCCAAGGAGGGCGGTC+AGG | + | chr3.2:59057653-59057672 | None:intergenic | 60.0% | |
| CATCACTCAGAGGGAGACGG+TGG | + | chr3.2:59056366-59056385 | None:intergenic | 60.0% | |
| CGGGAAGACGTCGTGCATCT+TGG | - | chr3.2:59057531-59057550 | MS.gene049610:CDS | 60.0% | |
| GCTAGCAGGATGAGAGACGG+AGG | - | chr3.2:59056763-59056782 | MS.gene049610:intron | 60.0% | |
| TAAGCCAAGGAGGGCGGTCA+GGG | + | chr3.2:59057652-59057671 | None:intergenic | 60.0% | |
| TCACCCTCAGACAAACGGGG+AGG | - | chr3.2:59057626-59057645 | MS.gene049610:CDS | 60.0% | |
| TCTTGGAACTGCCGAGGCCT+TGG | - | chr3.2:59057212-59057231 | MS.gene049610:intron | 60.0% | |
| TTCTTCTCGACGCGCAGCTC+TGG | + | chr3.2:59056724-59056743 | None:intergenic | 60.0% | |
| AGGGCCTCCCCGTTTGTCTG+AGG | + | chr3.2:59057633-59057652 | None:intergenic | 65.0% | |
| CGCCCTCCTTGGCTTATCCG+CGG | - | chr3.2:59057656-59057675 | MS.gene049610:CDS | 65.0% | |
| CGCGGATAAGCCAAGGAGGG+CGG | + | chr3.2:59057658-59057677 | None:intergenic | 65.0% | |
| GGGCCTCCCCGTTTGTCTGA+GGG | + | chr3.2:59057632-59057651 | None:intergenic | 65.0% | |
| TCATTGCCCTCGGCAGGCCT+GGG | + | chr3.2:59057184-59057203 | None:intergenic | 65.0% | |
| TTCATTGCCCTCGGCAGGCC+TGG | + | chr3.2:59057185-59057204 | None:intergenic | 65.0% | |
| ATCGGCAGAGCCTGGCTCCC+AGG | - | chr3.2:59057164-59057183 | MS.gene049610:intron | 70.0% | |
| CTGGCTCCCAGGCCTGCCGA+GGG | - | chr3.2:59057175-59057194 | MS.gene049610:intron | 75.0% | |
| GAGGCCCTGACCGCCCTCCT+TGG | - | chr3.2:59057645-59057664 | MS.gene049610:CDS | 75.0% | |
| ! | CCTCGGCAGGCCTGGGAGCC+AGG | + | chr3.2:59057177-59057196 | None:intergenic | 80.0% |
| ! | CCTGGCTCCCAGGCCTGCCG+AGG | - | chr3.2:59057174-59057193 | MS.gene049610:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 59056352 | 59057894 | 59056352 | ID=MS.gene049610 |
| chr3.2 | mRNA | 59056352 | 59057894 | 59056352 | ID=MS.gene049610.t1;Parent=MS.gene049610 |
| chr3.2 | exon | 59057248 | 59057894 | 59057248 | ID=MS.gene049610.t1.exon1;Parent=MS.gene049610.t1 |
| chr3.2 | CDS | 59057248 | 59057894 | 59057248 | ID=cds.MS.gene049610.t1;Parent=MS.gene049610.t1 |
| chr3.2 | exon | 59056352 | 59056466 | 59056352 | ID=MS.gene049610.t1.exon2;Parent=MS.gene049610.t1 |
| chr3.2 | CDS | 59056352 | 59056466 | 59056352 | ID=cds.MS.gene049610.t1;Parent=MS.gene049610.t1 |
| Gene Sequence |
| Protein sequence |
