Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34463.t1 | XP_024641609.1 | 65.3 | 369 | 18 | 1 | 1 | 259 | 4 | 372 | 3.10E-119 | 438 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34463.t1 | A0A392MB87 | 37.3 | 236 | 129 | 7 | 4 | 232 | 6 | 229 | 4.8e-29 | 137.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34463.t1 | MTR_1g036720 | 57.282 | 103 | 44 | 0 | 3 | 105 | 6 | 108 | 2.05e-37 | 128 |
MS.gene34463.t1 | MTR_0010s0370 | 49.565 | 115 | 57 | 1 | 4 | 117 | 7 | 121 | 1.23e-31 | 115 |
MS.gene34463.t1 | MTR_0010s0350 | 49.565 | 115 | 57 | 1 | 4 | 117 | 7 | 121 | 1.23e-31 | 115 |
MS.gene34463.t1 | MTR_2g061500 | 28.571 | 112 | 75 | 1 | 5 | 111 | 10 | 121 | 5.06e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 75 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGGTCAACTGTAACGTTTC+TGG | 0.166497 | 1.2:+75645703 | None:intergenic |
CAACGAAAATGGCAGAATTT+TGG | 0.190929 | 1.2:-75646354 | MS.gene34463:CDS |
CTTTGCGCAGGTGTGTTATC+TGG | 0.206826 | 1.2:+75646190 | None:intergenic |
TCTCTTCATGAGGTGATAAA+TGG | 0.229010 | 1.2:+75645558 | None:intergenic |
TCCTGAAGGACGAATTAAAT+TGG | 0.236101 | 1.2:+75645601 | None:intergenic |
ACCTCATGAAGAGACTTTAT+TGG | 0.263869 | 1.2:-75645549 | MS.gene34463:CDS |
GTCATCATGTGCCCTCTAAT+TGG | 0.284195 | 1.2:+75646376 | None:intergenic |
CAGATGATGGATTAAGATAC+TGG | 0.300286 | 1.2:-75645835 | MS.gene34463:CDS |
CCCAATTTAATTCGTCCTTC+AGG | 0.304710 | 1.2:-75645602 | MS.gene34463:CDS |
CGGTCACGTGCTGAATTAAT+TGG | 0.309753 | 1.2:-75645488 | MS.gene34463:CDS |
TTGATATTAACCCCTCTTCC+TGG | 0.311044 | 1.2:+75646328 | None:intergenic |
GCACATGATGACAACGAAAA+TGG | 0.363689 | 1.2:-75646365 | MS.gene34463:CDS |
CTTACTGATAAACCAATTAG+AGG | 0.375750 | 1.2:-75646388 | MS.gene34463:CDS |
GACACCAGTGCTTGTCTTGT+GGG | 0.387511 | 1.2:-75646418 | MS.gene34463:CDS |
GCAGAGGTTCTCGCTGGCTC+CGG | 0.388303 | 1.2:-75645775 | MS.gene34463:CDS |
GTTCCTCCTCTTCGTCACTT+AGG | 0.390268 | 1.2:+75646479 | None:intergenic |
TTCCTCCTCTTCGTCACTTA+GGG | 0.391799 | 1.2:+75646480 | None:intergenic |
AATTTGAATGTGAAAAGGTT+TGG | 0.399065 | 1.2:+75646295 | None:intergenic |
CTCTAATTGGTTTATCAGTA+AGG | 0.407046 | 1.2:+75646389 | None:intergenic |
CTGGCTCCGGGAGGAAGGCC+AGG | 0.433495 | 1.2:-75645762 | MS.gene34463:CDS |
CCTGAAGGACGAATTAAATT+GGG | 0.434007 | 1.2:+75645602 | None:intergenic |
CCTCTTCGTCACTTAGGGAT+AGG | 0.439494 | 1.2:+75646485 | None:intergenic |
GGAAGAATTTGAATGTGAAA+AGG | 0.442727 | 1.2:+75646290 | None:intergenic |
CAGAGGTTCTCGCTGGCTCC+GGG | 0.448953 | 1.2:-75645774 | MS.gene34463:CDS |
CTGGTGTCAGCAGTATTGTT+AGG | 0.455866 | 1.2:+75646433 | None:intergenic |
CTCTTCATGAGGTGATAAAT+GGG | 0.456893 | 1.2:+75645559 | None:intergenic |
TTAAATTGGGATTCTTCAGC+AGG | 0.458575 | 1.2:+75645615 | None:intergenic |
ACCACTCCTGGCCTTCCTCC+CGG | 0.465960 | 1.2:+75645756 | None:intergenic |
TTGTTAGGAATATCCTCAAT+TGG | 0.466496 | 1.2:+75646448 | None:intergenic |
GGAAAGTACTTCAACAATCC+AGG | 0.470097 | 1.2:-75645522 | MS.gene34463:CDS |
GTAACGTTTCTGGCCGCCCT+TGG | 0.476205 | 1.2:+75645713 | None:intergenic |
TTTGCGCAGGTGTGTTATCT+GGG | 0.479680 | 1.2:+75646191 | None:intergenic |
TCTCGCTGGCTCCGGGAGGA+AGG | 0.480967 | 1.2:-75645767 | MS.gene34463:CDS |
TCGTCACTTAGGGATAGGTT+TGG | 0.487764 | 1.2:+75646490 | None:intergenic |
CACCGTCAGCTTTGATGCCA+AGG | 0.495099 | 1.2:-75645730 | MS.gene34463:CDS |
TGACACCAGTGCTTGTCTTG+TGG | 0.497737 | 1.2:-75646419 | MS.gene34463:CDS |
TGAAGAGACTTTATTGGAGG+AGG | 0.502674 | 1.2:-75645543 | MS.gene34463:CDS |
GATTCTTCAGCAGGTCAGCT+AGG | 0.508161 | 1.2:+75645624 | None:intergenic |
AGGAAGAGGGGTTAATATCA+AGG | 0.509402 | 1.2:-75646326 | MS.gene34463:CDS |
TGAATCCTCACCTGTCAAAA+CGG | 0.511410 | 1.2:-75645651 | MS.gene34463:CDS |
CTGACGGTGGTAACCACTCC+TGG | 0.528085 | 1.2:+75645744 | None:intergenic |
TGGTTTGCATATCACGGAAG+TGG | 0.528304 | 1.2:+75646269 | None:intergenic |
TGTTATCTGGGAGAGTATTG+AGG | 0.534936 | 1.2:+75646203 | None:intergenic |
GGAGAGTATTGAGGATCAGT+AGG | 0.538423 | 1.2:+75646212 | None:intergenic |
TCATGAAGAGACTTTATTGG+AGG | 0.541631 | 1.2:-75645546 | MS.gene34463:CDS |
TGAGAATGGTTTGCATATCA+CGG | 0.559788 | 1.2:+75646263 | None:intergenic |
TATTCGGTAGACTCAGATGA+TGG | 0.559891 | 1.2:-75645848 | MS.gene34463:intron |
CAAAGCAGTAAGTGATGGTG+TGG | 0.561122 | 1.2:+75645430 | None:intergenic |
GGAACTCGAAATTCCAATTG+AGG | 0.564851 | 1.2:-75646461 | MS.gene34463:CDS |
ACCGTCAGCTTTGATGCCAA+GGG | 0.567009 | 1.2:-75645729 | MS.gene34463:CDS |
GCCCTTGGCATCAAAGCTGA+CGG | 0.567215 | 1.2:+75645728 | None:intergenic |
AGATGATGGATTAAGATACT+GGG | 0.567295 | 1.2:-75645834 | MS.gene34463:CDS |
TTACTGATAAACCAATTAGA+GGG | 0.570058 | 1.2:-75646387 | MS.gene34463:CDS |
ACTTAGGGATAGGTTTGGCA+TGG | 0.570217 | 1.2:+75646495 | None:intergenic |
TTTCCCCACAAGACAAGCAC+TGG | 0.571448 | 1.2:+75646414 | None:intergenic |
CAATCCAGGGTAATACAAAA+CGG | 0.573232 | 1.2:-75645508 | MS.gene34463:CDS |
TCCGGGAGGAAGGCCAGGAG+TGG | 0.581253 | 1.2:-75645757 | MS.gene34463:CDS |
TGTAGAGGCACACTTTGCGC+AGG | 0.583748 | 1.2:+75646178 | None:intergenic |
GTCTGTTTAATGCATCCTGA+AGG | 0.586022 | 1.2:+75645587 | None:intergenic |
TCCAATAAAGTCTCTTCATG+AGG | 0.602168 | 1.2:+75645548 | None:intergenic |
ACGAAGGCAGAGGTTCTCGC+TGG | 0.605120 | 1.2:-75645781 | MS.gene34463:CDS |
ACACCAGTGCTTGTCTTGTG+GGG | 0.607515 | 1.2:-75646417 | MS.gene34463:CDS |
GAAAGTACTTCAACAATCCA+GGG | 0.609461 | 1.2:-75645521 | MS.gene34463:CDS |
GTCAGCTTTGATGCCAAGGG+CGG | 0.618556 | 1.2:-75645726 | MS.gene34463:CDS |
ATCCCTAAGTGACGAAGAGG+AGG | 0.619327 | 1.2:-75646482 | MS.gene34463:CDS |
AAACTGAAGAACGAAGGCAG+AGG | 0.647380 | 1.2:-75645791 | MS.gene34463:CDS |
AGGTTCTCGCTGGCTCCGGG+AGG | 0.649071 | 1.2:-75645771 | MS.gene34463:CDS |
AAAGCAGTAAGTGATGGTGT+GGG | 0.661018 | 1.2:+75645431 | None:intergenic |
CCTATCCCTAAGTGACGAAG+AGG | 0.662777 | 1.2:-75646485 | MS.gene34463:CDS |
GATGATGGATTAAGATACTG+GGG | 0.666377 | 1.2:-75645833 | MS.gene34463:CDS |
CTTGGCATCAAAGCTGACGG+TGG | 0.696652 | 1.2:+75645731 | None:intergenic |
TGTTGCAAAGCAGTAAGTGA+TGG | 0.707455 | 1.2:+75645425 | None:intergenic |
AGGTTGTTGTCAAAGTACCA+AGG | 0.719247 | 1.2:+75646232 | None:intergenic |
AAGCAGTAAGTGATGGTGTG+GGG | 0.725643 | 1.2:+75645432 | None:intergenic |
ATGATGGATTAAGATACTGG+GGG | 0.736995 | 1.2:-75645832 | MS.gene34463:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AATTTGAATGTGAAAAGGTT+TGG | + | chr1.2:75645607-75645626 | None:intergenic | 25.0% |
! | TTACTGATAAACCAATTAGA+GGG | - | chr1.2:75645512-75645531 | MS.gene34463:CDS | 25.0% |
! | TTATTGTGACAAACTGTATT+CGG | - | chr1.2:75646035-75646054 | MS.gene34463:intron | 25.0% |
ATGCAAACCATTCTCAAAAA+AGG | - | chr1.2:75645643-75645662 | MS.gene34463:CDS | 30.0% | |
CTTACTGATAAACCAATTAG+AGG | - | chr1.2:75645511-75645530 | MS.gene34463:CDS | 30.0% | |
GGAAGAATTTGAATGTGAAA+AGG | + | chr1.2:75645612-75645631 | None:intergenic | 30.0% | |
TTGGAGTATGATGTCAAAAA+CGG | - | chr1.2:75645838-75645857 | MS.gene34463:CDS | 30.0% | |
TTGTTAGGAATATCCTCAAT+TGG | + | chr1.2:75645454-75645473 | None:intergenic | 30.0% | |
! | CATATATGATCTGAGATGAT+TGG | + | chr1.2:75645866-75645885 | None:intergenic | 30.0% |
! | CTCTAATTGGTTTATCAGTA+AGG | + | chr1.2:75645513-75645532 | None:intergenic | 30.0% |
! | CTTTTCTGTTACTGTTTATC+TGG | + | chr1.2:75646218-75646237 | None:intergenic | 30.0% |
!! | AGATGATGGATTAAGATACT+GGG | - | chr1.2:75646065-75646084 | MS.gene34463:intron | 30.0% |
!! | CTTTTGTCTTTTGAGTGATT+TGG | + | chr1.2:75645914-75645933 | None:intergenic | 30.0% |
AAATTCAAGTACGAACGTCT+AGG | - | chr1.2:75645970-75645989 | MS.gene34463:intron | 35.0% | |
ACCTCATGAAGAGACTTTAT+TGG | - | chr1.2:75646350-75646369 | MS.gene34463:CDS | 35.0% | |
ATCATGAATACGAACCCAAA+AGG | + | chr1.2:75645755-75645774 | None:intergenic | 35.0% | |
CAAAAGAAAATCAGACGTAC+AGG | - | chr1.2:75645928-75645947 | MS.gene34463:intron | 35.0% | |
CAATCCAGGGTAATACAAAA+CGG | - | chr1.2:75646391-75646410 | MS.gene34463:CDS | 35.0% | |
CCTGAAGGACGAATTAAATT+GGG | + | chr1.2:75646300-75646319 | None:intergenic | 35.0% | |
CTCTTCATGAGGTGATAAAT+GGG | + | chr1.2:75646343-75646362 | None:intergenic | 35.0% | |
GAATTTCATTGGCGAATTCT+TGG | - | chr1.2:75645819-75645838 | MS.gene34463:CDS | 35.0% | |
GGTAATTTCTGTTACTACTG+TGG | - | chr1.2:75645991-75646010 | MS.gene34463:intron | 35.0% | |
TCATGAAGAGACTTTATTGG+AGG | - | chr1.2:75646353-75646372 | MS.gene34463:CDS | 35.0% | |
TCATGAATACGAACCCAAAA+GGG | + | chr1.2:75645754-75645773 | None:intergenic | 35.0% | |
TCCAATAAAGTCTCTTCATG+AGG | + | chr1.2:75646354-75646373 | None:intergenic | 35.0% | |
TCCTGAAGGACGAATTAAAT+TGG | + | chr1.2:75646301-75646320 | None:intergenic | 35.0% | |
TCTCTTCATGAGGTGATAAA+TGG | + | chr1.2:75646344-75646363 | None:intergenic | 35.0% | |
TTAAATTGGGATTCTTCAGC+AGG | + | chr1.2:75646287-75646306 | None:intergenic | 35.0% | |
! | CAACGAAAATGGCAGAATTT+TGG | - | chr1.2:75645545-75645564 | MS.gene34463:CDS | 35.0% |
! | TCTACAATCAGTACCCTTTT+GGG | - | chr1.2:75645738-75645757 | MS.gene34463:CDS | 35.0% |
! | TGAGAATGGTTTGCATATCA+CGG | + | chr1.2:75645639-75645658 | None:intergenic | 35.0% |
!! | ATGATGGATTAAGATACTGG+GGG | - | chr1.2:75646067-75646086 | MS.gene34463:intron | 35.0% |
!! | CAGATGATGGATTAAGATAC+TGG | - | chr1.2:75646064-75646083 | MS.gene34463:intron | 35.0% |
!! | GAAAGTACTTCAACAATCCA+GGG | - | chr1.2:75646378-75646397 | MS.gene34463:CDS | 35.0% |
!! | GATGATGGATTAAGATACTG+GGG | - | chr1.2:75646066-75646085 | MS.gene34463:intron | 35.0% |
AAACACCTGGGGAATTTCAT+TGG | - | chr1.2:75645808-75645827 | MS.gene34463:CDS | 40.0% | |
AAGAAAATCAGACGTACAGG+AGG | - | chr1.2:75645931-75645950 | MS.gene34463:intron | 40.0% | |
AGAAAATCAGACGTACAGGA+GGG | - | chr1.2:75645932-75645951 | MS.gene34463:intron | 40.0% | |
AGGAAGAGGGGTTAATATCA+AGG | - | chr1.2:75645573-75645592 | MS.gene34463:CDS | 40.0% | |
CCATTCTCAAAAAAGGTCCT+TGG | - | chr1.2:75645650-75645669 | MS.gene34463:CDS | 40.0% | |
CCCAATTTAATTCGTCCTTC+AGG | - | chr1.2:75646297-75646316 | MS.gene34463:CDS | 40.0% | |
CGTATTCATGATGTTCCTGT+TGG | - | chr1.2:75645763-75645782 | MS.gene34463:CDS | 40.0% | |
CTTTCTGTCATAAAGCCAAC+AGG | + | chr1.2:75645781-75645800 | None:intergenic | 40.0% | |
GCACATGATGACAACGAAAA+TGG | - | chr1.2:75645534-75645553 | MS.gene34463:CDS | 40.0% | |
GCTTTATGACAGAAAGAGTG+GGG | - | chr1.2:75645785-75645804 | MS.gene34463:CDS | 40.0% | |
GGAACTCGAAATTCCAATTG+AGG | - | chr1.2:75645438-75645457 | MS.gene34463:CDS | 40.0% | |
GTCGAAAAACTGAAGAACGA+AGG | - | chr1.2:75646102-75646121 | MS.gene34463:intron | 40.0% | |
GTCTGTTTAATGCATCCTGA+AGG | + | chr1.2:75646315-75646334 | None:intergenic | 40.0% | |
TATTCGGTAGACTCAGATGA+TGG | - | chr1.2:75646051-75646070 | MS.gene34463:intron | 40.0% | |
TGAAGAGACTTTATTGGAGG+AGG | - | chr1.2:75646356-75646375 | MS.gene34463:CDS | 40.0% | |
TGAATCCTCACCTGTCAAAA+CGG | - | chr1.2:75646248-75646267 | MS.gene34463:CDS | 40.0% | |
TGTCACAATAATCCTCGATG+TGG | + | chr1.2:75646026-75646045 | None:intergenic | 40.0% | |
TGTTGCAAAGCAGTAAGTGA+TGG | + | chr1.2:75646477-75646496 | None:intergenic | 40.0% | |
TTGATATTAACCCCTCTTCC+TGG | + | chr1.2:75645574-75645593 | None:intergenic | 40.0% | |
! | AAAGCAGTAAGTGATGGTGT+GGG | + | chr1.2:75646471-75646490 | None:intergenic | 40.0% |
! | AGGTTGTTGTCAAAGTACCA+AGG | + | chr1.2:75645670-75645689 | None:intergenic | 40.0% |
! | CTCTACAATCAGTACCCTTT+TGG | - | chr1.2:75645737-75645756 | MS.gene34463:CDS | 40.0% |
! | GGCTTTATGACAGAAAGAGT+GGG | - | chr1.2:75645784-75645803 | MS.gene34463:CDS | 40.0% |
!! | AATTTTGGCATCCAGGAAGA+GGG | - | chr1.2:75645560-75645579 | MS.gene34463:CDS | 40.0% |
!! | CAAAAGGGTACTGATTGTAG+AGG | + | chr1.2:75645739-75645758 | None:intergenic | 40.0% |
!! | GGAAAGTACTTCAACAATCC+AGG | - | chr1.2:75646377-75646396 | MS.gene34463:CDS | 40.0% |
!! | TGGCTTTATGACAGAAAGAG+TGG | - | chr1.2:75645783-75645802 | MS.gene34463:CDS | 40.0% |
!! | TGTTATCTGGGAGAGTATTG+AGG | + | chr1.2:75645699-75645718 | None:intergenic | 40.0% |
!!! | CCAAGGACCTTTTTTGAGAA+TGG | + | chr1.2:75645653-75645672 | None:intergenic | 40.0% |
AAACTGAAGAACGAAGGCAG+AGG | - | chr1.2:75646108-75646127 | MS.gene34463:intron | 45.0% | |
ATTCGCCAATGAAATTCCCC+AGG | + | chr1.2:75645816-75645835 | None:intergenic | 45.0% | |
CGGTCACGTGCTGAATTAAT+TGG | - | chr1.2:75646411-75646430 | MS.gene34463:CDS | 45.0% | |
CTGGTCAACTGTAACGTTTC+TGG | + | chr1.2:75646199-75646218 | None:intergenic | 45.0% | |
GAAAATCAGACGTACAGGAG+GGG | - | chr1.2:75645933-75645952 | MS.gene34463:intron | 45.0% | |
GTCATCATGTGCCCTCTAAT+TGG | + | chr1.2:75645526-75645545 | None:intergenic | 45.0% | |
TCGTCACTTAGGGATAGGTT+TGG | + | chr1.2:75645412-75645431 | None:intergenic | 45.0% | |
TGTTACTACTGTGGAGCTCT+AGG | - | chr1.2:75646000-75646019 | MS.gene34463:intron | 45.0% | |
TTCCTCCTCTTCGTCACTTA+GGG | + | chr1.2:75645422-75645441 | None:intergenic | 45.0% | |
TTTGCGCAGGTGTGTTATCT+GGG | + | chr1.2:75645711-75645730 | None:intergenic | 45.0% | |
! | AAGCAGTAAGTGATGGTGTG+GGG | + | chr1.2:75646470-75646489 | None:intergenic | 45.0% |
! | CAAAGCAGTAAGTGATGGTG+TGG | + | chr1.2:75646472-75646491 | None:intergenic | 45.0% |
! | CTGGTGTCAGCAGTATTGTT+AGG | + | chr1.2:75645469-75645488 | None:intergenic | 45.0% |
! | GTGACCGTTTTGTATTACCC+TGG | + | chr1.2:75646398-75646417 | None:intergenic | 45.0% |
! | TGGTTTGCATATCACGGAAG+TGG | + | chr1.2:75645633-75645652 | None:intergenic | 45.0% |
!! | AGTTTTTCGACGCGTAACTC+AGG | + | chr1.2:75646093-75646112 | None:intergenic | 45.0% |
!! | ATGGCAGAATTTTGGCATCC+AGG | - | chr1.2:75645553-75645572 | MS.gene34463:CDS | 45.0% |
!! | ATTTTGGCATCCAGGAAGAG+GGG | - | chr1.2:75645561-75645580 | MS.gene34463:CDS | 45.0% |
!! | GAATTTTGGCATCCAGGAAG+AGG | - | chr1.2:75645559-75645578 | MS.gene34463:CDS | 45.0% |
!! | GGAGAGTATTGAGGATCAGT+AGG | + | chr1.2:75645690-75645709 | None:intergenic | 45.0% |
AAAGAGTGGGGAAACACCTG+GGG | - | chr1.2:75645797-75645816 | MS.gene34463:CDS | 50.0% | |
ACACCAGTGCTTGTCTTGTG+GGG | - | chr1.2:75645482-75645501 | MS.gene34463:CDS | 50.0% | |
AGAAAGAGTGGGGAAACACC+TGG | - | chr1.2:75645795-75645814 | MS.gene34463:CDS | 50.0% | |
ATCCCTAAGTGACGAAGAGG+AGG | - | chr1.2:75645417-75645436 | MS.gene34463:CDS | 50.0% | |
CCTATCCCTAAGTGACGAAG+AGG | - | chr1.2:75645414-75645433 | MS.gene34463:CDS | 50.0% | |
CCTCTTCGTCACTTAGGGAT+AGG | + | chr1.2:75645417-75645436 | None:intergenic | 50.0% | |
CTTTGCGCAGGTGTGTTATC+TGG | + | chr1.2:75645712-75645731 | None:intergenic | 50.0% | |
GAAAGAGTGGGGAAACACCT+GGG | - | chr1.2:75645796-75645815 | MS.gene34463:CDS | 50.0% | |
GACACCAGTGCTTGTCTTGT+GGG | - | chr1.2:75645481-75645500 | MS.gene34463:CDS | 50.0% | |
GATTCTTCAGCAGGTCAGCT+AGG | + | chr1.2:75646278-75646297 | None:intergenic | 50.0% | |
GTTCCTCCTCTTCGTCACTT+AGG | + | chr1.2:75645423-75645442 | None:intergenic | 50.0% | |
TGACACCAGTGCTTGTCTTG+TGG | - | chr1.2:75645480-75645499 | MS.gene34463:CDS | 50.0% | |
TTTCCCCACAAGACAAGCAC+TGG | + | chr1.2:75645488-75645507 | None:intergenic | 50.0% | |
! | ACCGTCAGCTTTGATGCCAA+GGG | - | chr1.2:75646170-75646189 | MS.gene34463:intron | 50.0% |
CTTGGCATCAAAGCTGACGG+TGG | + | chr1.2:75646171-75646190 | None:intergenic | 55.0% | |
GCCCTTGGCATCAAAGCTGA+CGG | + | chr1.2:75646174-75646193 | None:intergenic | 55.0% | |
! | CACCGTCAGCTTTGATGCCA+AGG | - | chr1.2:75646169-75646188 | MS.gene34463:intron | 55.0% |
! | GTCAGCTTTGATGCCAAGGG+CGG | - | chr1.2:75646173-75646192 | MS.gene34463:intron | 55.0% |
! | TGTAGAGGCACACTTTGCGC+AGG | + | chr1.2:75645724-75645743 | None:intergenic | 55.0% |
!! | GCTAGGCTGACCGTTTTGAC+AGG | + | chr1.2:75646261-75646280 | None:intergenic | 55.0% |
!! | GCTGACCGTTTTGACAGGTG+AGG | + | chr1.2:75646256-75646275 | None:intergenic | 55.0% |
ACGAAGGCAGAGGTTCTCGC+TGG | - | chr1.2:75646118-75646137 | MS.gene34463:intron | 60.0% | |
CTGACGGTGGTAACCACTCC+TGG | + | chr1.2:75646158-75646177 | None:intergenic | 60.0% | |
!! | GTAACGTTTCTGGCCGCCCT+TGG | + | chr1.2:75646189-75646208 | None:intergenic | 60.0% |
!! | TGGAGCTCTAGGCCACATCG+AGG | - | chr1.2:75646011-75646030 | MS.gene34463:intron | 60.0% |
! | ACCACTCCTGGCCTTCCTCC+CGG | + | chr1.2:75646146-75646165 | None:intergenic | 65.0% |
!! | CAGAGGTTCTCGCTGGCTCC+GGG | - | chr1.2:75646125-75646144 | MS.gene34463:intron | 65.0% |
!! | GCAGAGGTTCTCGCTGGCTC+CGG | - | chr1.2:75646124-75646143 | MS.gene34463:intron | 65.0% |
TCCGGGAGGAAGGCCAGGAG+TGG | - | chr1.2:75646142-75646161 | MS.gene34463:intron | 70.0% | |
!! | AGGTTCTCGCTGGCTCCGGG+AGG | - | chr1.2:75646128-75646147 | MS.gene34463:intron | 70.0% |
!! | TCTCGCTGGCTCCGGGAGGA+AGG | - | chr1.2:75646132-75646151 | MS.gene34463:intron | 70.0% |
CTGGCTCCGGGAGGAAGGCC+AGG | - | chr1.2:75646137-75646156 | MS.gene34463:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 75645406 | 75646515 | 75645406 | ID=MS.gene34463 |
chr1.2 | mRNA | 75645406 | 75646515 | 75645406 | ID=MS.gene34463.t1;Parent=MS.gene34463 |
chr1.2 | exon | 75646191 | 75646515 | 75646191 | ID=MS.gene34463.t1.exon1;Parent=MS.gene34463.t1 |
chr1.2 | CDS | 75646191 | 75646515 | 75646191 | ID=cds.MS.gene34463.t1;Parent=MS.gene34463.t1 |
chr1.2 | exon | 75645406 | 75645860 | 75645406 | ID=MS.gene34463.t1.exon2;Parent=MS.gene34463.t1 |
chr1.2 | CDS | 75645406 | 75645860 | 75645406 | ID=cds.MS.gene34463.t1;Parent=MS.gene34463.t1 |
Gene Sequence |
Protein sequence |