AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62249

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62249.t1 MTR_0042s0130 36.275 204 127 2 428 631 81 281 1.92e-33 132
MS.gene62249.t1 MTR_6g009010 35.784 204 112 3 428 631 65 249 1.10e-32 127
MS.gene62249.t1 MTR_2g055450 35.751 193 121 2 430 622 100 289 6.00e-27 114
MS.gene62249.t1 MTR_1g100687 31.518 257 138 9 456 705 6 231 1.44e-26 108
MS.gene62249.t1 MTR_2g018005 35.714 168 105 3 428 594 64 229 9.58e-26 106
MS.gene62249.t1 MTR_0010s0370 28.472 144 102 1 35 177 34 177 6.16e-22 94.4
MS.gene62249.t1 MTR_0010s0350 28.472 144 102 1 35 177 34 177 6.16e-22 94.4
MS.gene62249.t1 MTR_2g078880 34.568 162 90 2 428 589 41 186 8.53e-21 91.7
MS.gene62249.t1 MTR_6g034215 29.148 223 133 5 409 631 49 246 1.01e-20 94.4
MS.gene62249.t1 MTR_8g470880 32.927 164 108 1 454 617 362 523 2.10e-20 95.9
MS.gene62249.t1 MTR_6g034715 34.091 132 87 0 464 595 5 136 2.54e-20 89.4
MS.gene62249.t1 MTR_1g051330 28.502 207 136 4 446 644 215 417 2.94e-20 96.3
MS.gene62249.t1 MTR_0008s0210 36.735 147 51 3 48 187 5 116 5.79e-20 87.8
MS.gene62249.t1 MTR_4g020630 32.984 191 111 7 444 631 2 178 6.59e-20 94.4
MS.gene62249.t1 MTR_0008s0180 40.351 114 33 2 74 187 19 97 6.26e-19 84.3
MS.gene62249.t1 MTR_4g044433 35.088 114 73 1 428 541 35 147 7.53e-18 81.6
MS.gene62249.t1 MTR_6g033215 28.902 173 117 3 29 197 123 293 1.19e-17 84.7
MS.gene62249.t1 MTR_0111s0070 31.126 151 100 1 483 633 240 386 4.14e-15 79.3
MS.gene62249.t1 MTR_8g442690 27.083 192 129 2 446 630 21 208 6.67e-15 78.6
MS.gene62249.t1 MTR_6g046587 29.444 180 119 4 440 617 104 277 1.45e-14 75.1
MS.gene62249.t1 MTR_1g054775 26.493 268 175 8 410 671 601 852 3.51e-14 77.4
MS.gene62249.t1 MTR_6g045237 27.000 200 142 2 19 214 65 264 6.96e-14 75.1
MS.gene62249.t1 MTR_3g436680 36.364 99 62 1 537 634 2 100 7.65e-14 75.5
MS.gene62249.t1 MTR_3g044860 36.000 125 69 3 498 617 2 120 9.19e-14 73.2
MS.gene62249.t1 MTR_8g463110 27.861 201 137 5 506 703 119 314 8.47e-12 68.9
MS.gene62249.t1 MTR_0665s0030 33.333 117 78 0 481 597 79 195 1.44e-11 65.1
MS.gene62249.t1 MTR_0114s0080 36.957 92 58 0 497 588 33 124 1.96e-11 62.8
MS.gene62249.t1 MTR_5g058210 32.394 142 88 3 481 619 79 215 2.45e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62249.t1 AT3G31430 27.607 163 112 3 74 234 173 331 1.10e-12 70.5
MS.gene62249.t1 AT2G01050 28.481 158 108 3 58 214 103 256 2.36e-12 70.5

Find 213 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACTTCTTTGTTGGTTTC+TGG -0.025583 3.2:-61948756 None:intergenic
GTCTTTACCAATCACAAATT+TGG 0.140095 3.2:-61948701 None:intergenic
CCACTTCTTTGTTGGTTTCT+GGG 0.162955 3.2:-61948755 None:intergenic
TGGTCCTTCACTGGGGTTTA+TGG 0.165375 3.2:+61949293 MS.gene62249:CDS
GAAGCTTTGGTGACAGAATT+AGG 0.241493 3.2:+61948814 MS.gene62249:CDS
ATCTTCACATCTCTCATCTT+TGG 0.250394 3.2:-61949753 None:intergenic
TTGAGGTCTTGTACTTCTAC+TGG 0.253343 3.2:-61947914 None:intergenic
TTCCTTCTCCACTTCTTTGT+TGG 0.260270 3.2:-61948763 None:intergenic
CCCTGTTCTGTACTCTTTGA+AGG 0.267037 3.2:-61949852 None:intergenic
GTTAAGATGGAGAATAGTTC+TGG 0.274163 3.2:+61948478 MS.gene62249:CDS
CTTTGCGGTCTGAATGATTT+GGG 0.284865 3.2:+61949494 MS.gene62249:CDS
AACAGGAAGAGAACAGAAAA+AGG 0.291823 3.2:+61948616 MS.gene62249:CDS
AAATGTGATTCCTCTTCTTT+TGG 0.295412 3.2:-61949709 None:intergenic
ATTCTCGTCGAAGAGGGATT+TGG 0.295523 3.2:+61947958 MS.gene62249:CDS
TTCCAGAGGATCACAATAAA+TGG 0.299786 3.2:+61949318 MS.gene62249:CDS
AATTCTGTCACCAAAGCTTC+TGG 0.313884 3.2:-61948811 None:intergenic
TTAACCTCCCCAGTGATCTT+TGG 0.314230 3.2:-61948460 None:intergenic
ATTAATTGATGTTGCTGTTA+TGG 0.318787 3.2:+61948846 MS.gene62249:CDS
AGAAATGGAAAACTGGAAAA+AGG 0.326228 3.2:+61947724 None:intergenic
GAGCACCAACCCATTGTATC+AGG 0.356570 3.2:+61949798 MS.gene62249:CDS
ACTTTGCGGTCTGAATGATT+TGG 0.358042 3.2:+61949493 MS.gene62249:CDS
CTACCATTTGACCAAGTATA+AGG 0.360518 3.2:-61949530 None:intergenic
TTCCATTTATTGTGATCCTC+TGG 0.380538 3.2:-61949320 None:intergenic
CTGGTGGTCTGGCTTTGCTC+TGG 0.383800 3.2:+61949186 MS.gene62249:CDS
AAGAAGTGGAGAAGGAAGAA+GGG 0.384625 3.2:+61948769 MS.gene62249:CDS
CTGAATGATTTGGGCTTTGA+AGG 0.385992 3.2:+61949503 MS.gene62249:CDS
GCCACACTCTCTACTTCAAC+CGG 0.388200 3.2:-61948652 None:intergenic
CGAGGAGCAACCGTCAGATA+TGG 0.390838 3.2:+61948048 MS.gene62249:CDS
AGATGCATACTGGTGAGTTC+TGG 0.391082 3.2:+61948071 MS.gene62249:CDS
ACTCTCTGGTTGGAAAGCTT+TGG 0.392070 3.2:+61947825 MS.gene62249:CDS
GCACTCCCATATGAATTTGT+TGG 0.392588 3.2:-61949358 None:intergenic
TGTCCTCGCAATCCTTGATT+TGG 0.392791 3.2:-61948354 None:intergenic
GCAATTTCCAAATTTGTGAT+TGG 0.394736 3.2:+61948694 MS.gene62249:CDS
TCCCCTCTGCATAGATCCAT+TGG 0.397445 3.2:-61948877 None:intergenic
GAGGATATTGTTACATTCAC+TGG 0.400525 3.2:-61949215 None:intergenic
CTCTGTCAACCTCCTTACTT+TGG 0.403450 3.2:-61948534 None:intergenic
CAGATGGTGTGGAGGAATGT+GGG 0.405082 3.2:+61947786 MS.gene62249:CDS
ACACTTCATTTGCCGAGGTA+TGG 0.405697 3.2:+61949635 MS.gene62249:CDS
AAGGAGGTTGACAGAGAGAA+GGG 0.406882 3.2:+61948541 MS.gene62249:CDS
AGGGGTCATTCCAGAAGCTT+TGG 0.409235 3.2:+61948801 MS.gene62249:CDS
ATTGGTCCAACAAATTCATA+TGG 0.415632 3.2:+61949352 MS.gene62249:CDS
TAAGGATGAGGCAGAGTTTG+AGG 0.416277 3.2:+61948384 MS.gene62249:CDS
GTTGGTTTCTGGGCTTCACT+TGG 0.416674 3.2:-61948745 None:intergenic
TATCCTTATACTTGGTCAAA+TGG 0.418111 3.2:+61949527 MS.gene62249:CDS
ACCTTCAAAGAGTACAGAAC+AGG 0.420643 3.2:+61949851 MS.gene62249:CDS
TGAAGATTCGTCCGTTGAAA+GGG 0.428891 3.2:-61947856 None:intergenic
AACAGGTGATTGTCAATGCT+TGG 0.431931 3.2:+61947879 MS.gene62249:CDS
AAAGAAACTTGGTGATCTCC+TGG 0.434651 3.2:+61948141 MS.gene62249:CDS
TGAGATCTTTGCAAACTCTC+TGG 0.435011 3.2:+61947811 MS.gene62249:CDS
GATGCGAGCTTACAAAGCTT+TGG 0.435631 3.2:+61949949 MS.gene62249:CDS
TCTCCTTTGCCAAAGATCAC+TGG 0.435781 3.2:+61948451 MS.gene62249:CDS
TCGACAGGGCAGTTGCTTCA+TGG 0.438865 3.2:+61949455 MS.gene62249:CDS
GTGGTCTGGCTTTGCTCTGG+AGG 0.439781 3.2:+61949189 MS.gene62249:CDS
GGGCAACAATGGTCCTTCAC+TGG 0.449141 3.2:+61949284 MS.gene62249:CDS
CACTTCATTTGCCGAGGTAT+GGG 0.450168 3.2:+61949636 MS.gene62249:CDS
AAAGAAGTGGAGAAGGAAGA+AGG 0.450606 3.2:+61948768 MS.gene62249:CDS
TTTGTTGATGATTTGGAAGA+TGG 0.452646 3.2:+61949263 MS.gene62249:CDS
CAGAGAGAAGGGGAAGGATG+TGG 0.452826 3.2:+61948552 MS.gene62249:CDS
ATGGTCCTTGGAGCTTTGAT+AGG 0.454879 3.2:+61947996 MS.gene62249:CDS
CTCCTTTGCCAAAGATCACT+GGG 0.455465 3.2:+61948452 MS.gene62249:CDS
GGAGGTAATGCTAGATCGAC+AGG 0.455749 3.2:+61949440 MS.gene62249:CDS
GGCAACAATGGTCCTTCACT+GGG 0.458124 3.2:+61949285 MS.gene62249:CDS
GTCAAAGGAGGAGGAAGAAG+AGG 0.460649 3.2:+61947754 MS.gene62249:CDS
TAGCAAGGAAAGTAACAGAT+TGG 0.462196 3.2:+61948183 MS.gene62249:CDS
TGAGGTCTTGTACTTCTACT+GGG 0.465725 3.2:-61947913 None:intergenic
TTCATATGGGAGTGCAAGAT+AGG 0.466086 3.2:+61949366 MS.gene62249:CDS
GCGAGGATGCTCATCCGAAC+AGG 0.466175 3.2:+61948599 MS.gene62249:CDS
TGGTCTGGCTTTGCTCTGGA+GGG 0.467864 3.2:+61949190 MS.gene62249:CDS
TAAGGAAAGAGCTGGTGGTC+TGG 0.468166 3.2:+61949175 MS.gene62249:CDS
TTGGAGTTAGTTGTGAAGAA+TGG 0.468403 3.2:+61947977 MS.gene62249:CDS
AAGATTTAATCAAAGAAGCT+TGG 0.469601 3.2:+61949771 MS.gene62249:CDS
GTGATTCTAAAGCGCATCTC+AGG 0.470185 3.2:+61948025 MS.gene62249:CDS
TAAATGGAAGACATGGCAAT+TGG 0.470196 3.2:+61949334 MS.gene62249:CDS
ACTGTAATTTCCTGATACAA+TGG 0.471238 3.2:-61949808 None:intergenic
TGCTCAAAGATAACAATATG+TGG 0.472050 3.2:+61949909 MS.gene62249:CDS
GATCACTGGGGAGGTTAAGA+TGG 0.476181 3.2:+61948465 MS.gene62249:CDS
CCCCTCTGCATAGATCCATT+GGG 0.479405 3.2:-61948876 None:intergenic
TTGAAGGTTATCCTTATACT+TGG 0.480724 3.2:+61949519 MS.gene62249:CDS
GTTTCGATTCTCGTCGAAGA+GGG 0.482013 3.2:+61947952 MS.gene62249:CDS
ATCTTTGCAAACTCTCTGGT+TGG 0.483082 3.2:+61947815 MS.gene62249:CDS
ACTGTGGAGTGTAGTGGTTT+TGG 0.484216 3.2:+61949152 MS.gene62249:CDS
GCAAGATAGGTGGTTGTGTG+TGG 0.485187 3.2:+61949379 MS.gene62249:CDS
CAACGGACGAATCTTCAAAC+AGG 0.487605 3.2:+61947862 MS.gene62249:CDS
TAAGGAGGTTGACAGAGAGA+AGG 0.495666 3.2:+61948540 MS.gene62249:CDS
GCAGATGGTGTGTGGTGGAG+AGG 0.496535 3.2:+61950127 MS.gene62249:CDS
TTGAAGATTCGTCCGTTGAA+AGG 0.497019 3.2:-61947857 None:intergenic
AGCAAGGAAAGTAACAGATT+GGG 0.499126 3.2:+61948184 MS.gene62249:CDS
CTCGGAGGCTAGCCAAAGTA+AGG 0.499258 3.2:+61948522 MS.gene62249:CDS
ATGGTAAAGCAGACCAAAGA+AGG 0.500245 3.2:+61950074 MS.gene62249:intron
TCAGATATGGAGATGCATAC+TGG 0.500499 3.2:+61948061 MS.gene62249:CDS
CTGTAATTTCCTGATACAAT+GGG 0.500864 3.2:-61949807 None:intergenic
AACCAACAAAGAAGTGGAGA+AGG 0.505733 3.2:+61948761 MS.gene62249:CDS
AATGAGATGGCAAAGAAACT+TGG 0.507538 3.2:+61948130 MS.gene62249:CDS
TTAAGATGGAGAATAGTTCT+GGG 0.509059 3.2:+61948479 MS.gene62249:CDS
TCAAAGCAAATATAGATTTG+AGG 0.509472 3.2:+61948221 MS.gene62249:CDS
AAGAAACTTGGTGATCTCCT+GGG 0.509483 3.2:+61948142 MS.gene62249:CDS
CTTATACTTGGTCAAATGGT+AGG 0.510613 3.2:+61949531 MS.gene62249:CDS
GTGCAACAGAAGTTTGTTCT+CGG 0.510990 3.2:+61948504 MS.gene62249:CDS
GCTCGCAACCACTTGCCAAA+GGG 0.515081 3.2:-61948427 None:intergenic
TTGTTGATGATTTGGAAGAT+GGG 0.516514 3.2:+61949264 MS.gene62249:CDS
CAGATGGTGTGTGGTGGAGA+GGG 0.525480 3.2:+61950128 MS.gene62249:CDS
GCTTCCAACTCAAACAAAAG+AGG 0.525557 3.2:-61949671 None:intergenic
AATCAAGGATTGCGAGGACA+TGG 0.526201 3.2:+61948357 MS.gene62249:CDS
CTTCCAACTCAAACAAAAGA+GGG 0.529115 3.2:-61949670 None:intergenic
TTGCGAGGACATGGATGGTA+AGG 0.530899 3.2:+61948366 MS.gene62249:CDS
CCCAGAAACCAACAAAGAAG+TGG 0.535077 3.2:+61948755 MS.gene62249:CDS
TATGTGGTTCAAAGAATAAG+AGG 0.535649 3.2:-61949234 None:intergenic
GCAGATGGTGTGGAGGAATG+TGG 0.535776 3.2:+61947785 MS.gene62249:CDS
GGTAGCACTGTCAAAGGAGG+AGG 0.539008 3.2:+61947745 MS.gene62249:CDS
ATGACCGTTCCTCGTTTCAG+TGG 0.540350 3.2:-61948247 None:intergenic
GATAACAATATGTGGGCAGA+AGG 0.544866 3.2:+61949917 MS.gene62249:CDS
GAAAATAGGACACCAAATCA+AGG 0.545580 3.2:+61948342 MS.gene62249:CDS
TGGACCACCGACCCTTTCAA+CGG 0.548337 3.2:+61947845 MS.gene62249:CDS
GGAGGAAGAAGAGGGTTTCG+TGG 0.548578 3.2:+61947763 MS.gene62249:CDS
TAGTTGTGAAGAATGGTCCT+TGG 0.548690 3.2:+61947984 MS.gene62249:CDS
CGCTCGCAACCACTTGCCAA+AGG 0.550006 3.2:-61948428 None:intergenic
AGATGGTGTGGAGGAATGTG+GGG 0.554719 3.2:+61947787 MS.gene62249:CDS
GTTGAACAAATAGCTGAGAC+AGG 0.557272 3.2:+61948577 MS.gene62249:CDS
CAGGGCAGTTGCTTCATGGT+AGG 0.557497 3.2:+61949459 MS.gene62249:CDS
GGTTGACAGAGAGAAGGGGA+AGG 0.559185 3.2:+61948546 MS.gene62249:CDS
AAGAAATGCCCTTTGGCAAG+TGG 0.559752 3.2:+61948419 MS.gene62249:CDS
TAACAATATGTGGGCAGAAG+GGG 0.560379 3.2:+61949919 MS.gene62249:CDS
GAAGAGGGTTTCGTGGCAGA+TGG 0.560665 3.2:+61947770 MS.gene62249:CDS
AATCTATATTTGCTTTGACT+CGG 0.560723 3.2:-61948216 None:intergenic
TTAAGGGTGAAGTTTAAATG+TGG 0.562852 3.2:+61949113 MS.gene62249:intron
TCATTTGATCTCAGTTTCAG+TGG 0.565666 3.2:-61948112 None:intergenic
GCTTCATGGTAGGCGTGCGA+TGG 0.566283 3.2:+61949469 MS.gene62249:CDS
TCTTATTCTTTGAACCACAT+AGG 0.569412 3.2:+61949236 MS.gene62249:CDS
ATCTATGCAGAGGGGACCAA+AGG 0.570202 3.2:+61948884 MS.gene62249:CDS
GGGTTTCGTGGCAGATGGTG+TGG 0.571477 3.2:+61947775 MS.gene62249:CDS
AGAAGTGGAGAAGGAAGAAG+GGG 0.574941 3.2:+61948770 MS.gene62249:CDS
GGACATGGATGGTAAGGATG+AGG 0.575179 3.2:+61948372 MS.gene62249:CDS
ATTGATGTTGCTGTTATGGA+AGG 0.575180 3.2:+61948850 MS.gene62249:CDS
ATAACAATATGTGGGCAGAA+GGG 0.575317 3.2:+61949918 MS.gene62249:CDS
AAGAAGCTGCGGGACGCAGA+TGG 0.576193 3.2:+61950112 MS.gene62249:CDS
GGAACGGTCATCAAGTATCA+AGG 0.577998 3.2:+61948259 MS.gene62249:CDS
CCTGGGGAAGTTCGTAGAGG+TGG 0.579514 3.2:+61948159 MS.gene62249:CDS
GTAATGAGTACCAAAAGAAG+AGG 0.582401 3.2:+61949699 MS.gene62249:CDS
GTGCAGACTTGACAGAGGCT+TGG 0.586674 3.2:+61949574 MS.gene62249:CDS
ATTTGGAAGATGGGCAACAA+TGG 0.587569 3.2:+61949273 MS.gene62249:CDS
GAAACTGAGATCAAATGAGA+TGG 0.589489 3.2:+61948117 MS.gene62249:CDS
TTGGTCCAACAAATTCATAT+GGG 0.591561 3.2:+61949353 MS.gene62249:CDS
TCCCCAGTGATCTTTGGCAA+AGG 0.592356 3.2:-61948454 None:intergenic
TATTCTTTGAACCACATAGG+AGG 0.593398 3.2:+61949239 MS.gene62249:CDS
CCACCTCTACGAACTTCCCC+AGG 0.594988 3.2:-61948159 None:intergenic
TGGGGTTTATGGCTTTCCAG+AGG 0.596204 3.2:+61949304 MS.gene62249:CDS
CAAATGGTAGGTTGAGCGAT+GGG 0.596231 3.2:+61949543 MS.gene62249:CDS
ACCCAATGGATCTATGCAGA+GGG 0.596962 3.2:+61948875 MS.gene62249:CDS
GTTCGTAGAGGTGGATAGCA+AGG 0.597150 3.2:+61948168 MS.gene62249:CDS
AGGAGGTTGACAGAGAGAAG+GGG 0.600011 3.2:+61948542 MS.gene62249:CDS
GCTCAAAGATAACAATATGT+GGG 0.601152 3.2:+61949910 MS.gene62249:CDS
TCAAAACACTTCATTTGCCG+AGG 0.603245 3.2:+61949630 MS.gene62249:CDS
CAAGATAGGTGGTTGTGTGT+GGG 0.605859 3.2:+61949380 MS.gene62249:CDS
TGTTTCGATTCTCGTCGAAG+AGG 0.610144 3.2:+61947951 MS.gene62249:CDS
CAATTTAATGAGAACAAATG+AGG 0.611189 3.2:+61949985 MS.gene62249:CDS
AAAAGGGGTAGTAACGAGCC+CGG 0.612701 3.2:+61948633 MS.gene62249:CDS
TCAAAGGAGGAGGAAGAAGA+GGG 0.612941 3.2:+61947755 MS.gene62249:CDS
AGGCGTGCGATGGAACTTTG+CGG 0.617613 3.2:+61949479 MS.gene62249:CDS
CCTTCAAAGAGTACAGAACA+GGG 0.620656 3.2:+61949852 MS.gene62249:CDS
CATCAACAAAACCTCCTATG+TGG 0.622847 3.2:-61949250 None:intergenic
TCAAATGGTAGGTTGAGCGA+TGG 0.624700 3.2:+61949542 MS.gene62249:CDS
CCCGGTTGAAGTAGAGAGTG+TGG 0.625700 3.2:+61948651 MS.gene62249:CDS
AAACGCAATCAAGAAGCTGC+GGG 0.628247 3.2:+61950102 MS.gene62249:CDS
GGACAAACTGTGGAGTGTAG+TGG 0.628421 3.2:+61949146 MS.gene62249:CDS
TCGTCCGTTGAAAGGGTCGG+TGG 0.628646 3.2:-61947849 None:intergenic
ATCACAATAAATGGAAGACA+TGG 0.628711 3.2:+61949327 MS.gene62249:CDS
CAAACGCAATCAAGAAGCTG+CGG 0.628792 3.2:+61950101 MS.gene62249:CDS
TGCGGGACGCAGATGGTGTG+TGG 0.629831 3.2:+61950119 MS.gene62249:CDS
AAGGATTGCGAGGACATGGA+TGG 0.630731 3.2:+61948361 MS.gene62249:CDS
AGATGGTGTGTGGTGGAGAG+GGG 0.631512 3.2:+61950129 MS.gene62249:CDS
AGAAACTTGGTGATCTCCTG+GGG 0.632093 3.2:+61948143 MS.gene62249:CDS
TGTGATTGGTAAAGACGACA+AGG 0.632421 3.2:+61948708 MS.gene62249:CDS
GATTCGTCCGTTGAAAGGGT+CGG 0.633803 3.2:-61947852 None:intergenic
GACCCAATGGATCTATGCAG+AGG 0.637758 3.2:+61948874 MS.gene62249:CDS
TCTAAAGCGCATCTCAGGCG+AGG 0.638581 3.2:+61948030 MS.gene62249:CDS
GTATGCATCTCCATATCTGA+CGG 0.639983 3.2:-61948058 None:intergenic
CCACACTCTCTACTTCAACC+GGG 0.640489 3.2:-61948651 None:intergenic
TTTGGTAAGGAAAGAGCTGG+TGG 0.643600 3.2:+61949170 MS.gene62249:CDS
AGGTGATTGTCAATGCTTGG+AGG 0.647999 3.2:+61947882 MS.gene62249:CDS
AAAGCCATAAACCCCAGTGA+AGG 0.649455 3.2:-61949297 None:intergenic
ATATGGGAGTGCAAGATAGG+TGG 0.651442 3.2:+61949369 MS.gene62249:CDS
CTTGTTGCGAACGAGAAGCG+AGG 0.651574 3.2:+61949419 MS.gene62249:CDS
ACACCAAATCAAGGATTGCG+AGG 0.652058 3.2:+61948351 MS.gene62249:CDS
CAACAGAAGTTTGTTCTCGG+AGG 0.652860 3.2:+61948507 MS.gene62249:CDS
TTTGCCAAAGATCACTGGGG+AGG 0.657344 3.2:+61948456 MS.gene62249:CDS
AATTTCCTGATACAATGGGT+TGG 0.658087 3.2:-61949803 None:intergenic
AAAGGTAGCACTGTCAAAGG+AGG 0.658642 3.2:+61947742 MS.gene62249:CDS
TGTTATGGAAGGAGACCCAA+TGG 0.662684 3.2:+61948861 MS.gene62249:CDS
TTTCGTGGCAGATGGTGTGG+AGG 0.668130 3.2:+61947778 MS.gene62249:CDS
GGGACGCAGATGGTGTGTGG+TGG 0.668524 3.2:+61950122 MS.gene62249:CDS
GCATGATCAGACCCATACCT+CGG 0.671261 3.2:-61949647 None:intergenic
GCAGACACAAAATTACCAGA+GGG 0.671583 3.2:+61948928 MS.gene62249:CDS
GTGATTGGTAAAGACGACAA+GGG 0.671878 3.2:+61948709 MS.gene62249:CDS
AGACACAAAATTACCAGAGG+GGG 0.673417 3.2:+61948930 MS.gene62249:CDS
ATATTCCTATCAAAGCTCCA+AGG 0.674347 3.2:-61948001 None:intergenic
GGAGGCTAGCCAAAGTAAGG+AGG 0.674407 3.2:+61948525 MS.gene62249:CDS
GTTGCGAACGAGAAGCGAGG+AGG 0.677832 3.2:+61949422 MS.gene62249:CDS
TTCCAACTCAAACAAAAGAG+GGG 0.679609 3.2:-61949669 None:intergenic
TTGAGGAAGCCACTGAAACG+AGG 0.683544 3.2:+61948238 MS.gene62249:CDS
TGCAGACACAAAATTACCAG+AGG 0.686196 3.2:+61948927 MS.gene62249:CDS
ACAAATAGCTGAGACAGGCG+AGG 0.704973 3.2:+61948582 MS.gene62249:CDS
TCTCCTGGGGAAGTTCGTAG+AGG 0.705159 3.2:+61948156 MS.gene62249:CDS
GAAGCCACTGAAACGAGGAA+CGG 0.705887 3.2:+61948243 MS.gene62249:CDS
AAGGAGAAAATTGACAACGG+AGG 0.710358 3.2:+61948903 MS.gene62249:CDS
GCAACAATGGTCCTTCACTG+GGG 0.717999 3.2:+61949286 MS.gene62249:CDS
CCGCAAATAAAACAGAACGT+AGG 0.722365 3.2:-61948319 None:intergenic
CCAAAGGAGAAAATTGACAA+CGG 0.725849 3.2:+61948900 MS.gene62249:CDS
CCCAATGGATCTATGCAGAG+GGG 0.732017 3.2:+61948876 MS.gene62249:CDS
GAGGTAATGCTAGATCGACA+GGG 0.734438 3.2:+61949441 MS.gene62249:CDS
ATACAGTGCAGACTTGACAG+AGG 0.742400 3.2:+61949569 MS.gene62249:CDS
CTTCAAAGAGTACAGAACAG+GGG 0.754030 3.2:+61949853 MS.gene62249:CDS
TCCTTTGCCAAAGATCACTG+GGG 0.755668 3.2:+61948453 MS.gene62249:CDS
CAGACACAAAATTACCAGAG+GGG 0.768544 3.2:+61948929 MS.gene62249:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAGATTTTGAAATGTTAA+GGG + chr3.2:61949097-61949116 MS.gene62249:intron 15.0%
!!! TTAAAGATTTTGAAATGTTA+AGG + chr3.2:61949096-61949115 MS.gene62249:intron 15.0%
! AAGATTTAATCAAAGAAGCT+TGG + chr3.2:61949771-61949790 MS.gene62249:CDS 25.0%
! AATCTATATTTGCTTTGACT+CGG - chr3.2:61948219-61948238 None:intergenic 25.0%
! CAATTTAATGAGAACAAATG+AGG + chr3.2:61949985-61950004 MS.gene62249:CDS 25.0%
! GTTCATACTTGAAAAAGATT+CGG - chr3.2:61948294-61948313 None:intergenic 25.0%
! TCAAAGCAAATATAGATTTG+AGG + chr3.2:61948221-61948240 MS.gene62249:CDS 25.0%
! TCCATTAAGAAGACTAAATT+GGG - chr3.2:61949068-61949087 None:intergenic 25.0%
!! ATTAATTGATGTTGCTGTTA+TGG + chr3.2:61948846-61948865 MS.gene62249:CDS 25.0%
!! TCCAACTCAATATTTTCATT+GGG - chr3.2:61948980-61948999 None:intergenic 25.0%
!! TTCCAACTCAATATTTTCAT+TGG - chr3.2:61948981-61949000 None:intergenic 25.0%
!!! GAATCTTTTTCAAGTATGAA+CGG + chr3.2:61948293-61948312 MS.gene62249:CDS 25.0%
!!! GTTTAAATGTGGTTTTGTAT+CGG + chr3.2:61949124-61949143 MS.gene62249:intron 25.0%
!!! TTTAAATGTGGTTTTGTATC+GGG + chr3.2:61949125-61949144 MS.gene62249:CDS 25.0%
ACAGAAAAAGATTCTTGTTG+AGG - chr3.2:61947934-61947953 None:intergenic 30.0%
ACTGTAATTTCCTGATACAA+TGG - chr3.2:61949811-61949830 None:intergenic 30.0%
ATCACAATAAATGGAAGACA+TGG + chr3.2:61949327-61949346 MS.gene62249:CDS 30.0%
ATTGGTCCAACAAATTCATA+TGG + chr3.2:61949352-61949371 MS.gene62249:CDS 30.0%
CTCCATTAAGAAGACTAAAT+TGG - chr3.2:61949069-61949088 None:intergenic 30.0%
CTGTAATTTCCTGATACAAT+GGG - chr3.2:61949810-61949829 None:intergenic 30.0%
GCAATTTCCAAATTTGTGAT+TGG + chr3.2:61948694-61948713 MS.gene62249:CDS 30.0%
GCTCAAAGATAACAATATGT+GGG + chr3.2:61949910-61949929 MS.gene62249:CDS 30.0%
GTCTTTACCAATCACAAATT+TGG - chr3.2:61948704-61948723 None:intergenic 30.0%
TATCCTTATACTTGGTCAAA+TGG + chr3.2:61949527-61949546 MS.gene62249:CDS 30.0%
TATGTGGTTCAAAGAATAAG+AGG - chr3.2:61949237-61949256 None:intergenic 30.0%
TCCCAATGAAAATATTGAGT+TGG + chr3.2:61948976-61948995 MS.gene62249:intron 30.0%
TCTTATTCTTTGAACCACAT+AGG + chr3.2:61949236-61949255 MS.gene62249:CDS 30.0%
TGCTCAAAGATAACAATATG+TGG + chr3.2:61949909-61949928 MS.gene62249:CDS 30.0%
TTAAGATGGAGAATAGTTCT+GGG + chr3.2:61948479-61948498 MS.gene62249:CDS 30.0%
TTAAGGGTGAAGTTTAAATG+TGG + chr3.2:61949113-61949132 MS.gene62249:intron 30.0%
TTGAAGGTTATCCTTATACT+TGG + chr3.2:61949519-61949538 MS.gene62249:CDS 30.0%
TTGGTCCAACAAATTCATAT+GGG + chr3.2:61949353-61949372 MS.gene62249:CDS 30.0%
! AAATGTGATTCCTCTTCTTT+TGG - chr3.2:61949712-61949731 None:intergenic 30.0%
! AATATTTTCATTGGGATAGG+AGG - chr3.2:61948972-61948991 None:intergenic 30.0%
! CTAAATTGGGATTTTCCAAA+CGG - chr3.2:61949055-61949074 None:intergenic 30.0%
! CTCAATATTTTCATTGGGAT+AGG - chr3.2:61948975-61948994 None:intergenic 30.0%
! TCCCAATTTAGTCTTCTTAA+TGG + chr3.2:61949064-61949083 MS.gene62249:intron 30.0%
! TCTTTTGGTACTCATTACAA+CGG - chr3.2:61949697-61949716 None:intergenic 30.0%
! TTTTCAGATTTGAAGAAGCT+TGG + chr3.2:61949729-61949748 MS.gene62249:CDS 30.0%
!! TTGTTGATGATTTGGAAGAT+GGG + chr3.2:61949264-61949283 MS.gene62249:CDS 30.0%
!! TTTGTTGATGATTTGGAAGA+TGG + chr3.2:61949263-61949282 MS.gene62249:CDS 30.0%
!!! TGTTTTATTTGCGGGAAAAT+AGG + chr3.2:61948328-61948347 MS.gene62249:CDS 30.0%
AACAGGAAGAGAACAGAAAA+AGG + chr3.2:61948616-61948635 MS.gene62249:CDS 35.0%
AATGAGATGGCAAAGAAACT+TGG + chr3.2:61948130-61948149 MS.gene62249:CDS 35.0%
AATTTCCTGATACAATGGGT+TGG - chr3.2:61949806-61949825 None:intergenic 35.0%
ACAGGAAGAGAACAGAAAAA+GGG + chr3.2:61948617-61948636 MS.gene62249:CDS 35.0%
AGAAACACAAAGTTCTTCCA+TGG + chr3.2:61950055-61950074 MS.gene62249:intron 35.0%
AGCAAGGAAAGTAACAGATT+GGG + chr3.2:61948184-61948203 MS.gene62249:CDS 35.0%
ATAACAATATGTGGGCAGAA+GGG + chr3.2:61949918-61949937 MS.gene62249:CDS 35.0%
ATATTCCTATCAAAGCTCCA+AGG - chr3.2:61948004-61948023 None:intergenic 35.0%
ATCTTCACATCTCTCATCTT+TGG - chr3.2:61949756-61949775 None:intergenic 35.0%
CCAAAGGAGAAAATTGACAA+CGG + chr3.2:61948900-61948919 MS.gene62249:CDS 35.0%
CTACCATTTGACCAAGTATA+AGG - chr3.2:61949533-61949552 None:intergenic 35.0%
CTTATACTTGGTCAAATGGT+AGG + chr3.2:61949531-61949550 MS.gene62249:CDS 35.0%
CTTCCAACTCAAACAAAAGA+GGG - chr3.2:61949673-61949692 None:intergenic 35.0%
GAAAATAGGACACCAAATCA+AGG + chr3.2:61948342-61948361 MS.gene62249:CDS 35.0%
GAAACTGAGATCAAATGAGA+TGG + chr3.2:61948117-61948136 MS.gene62249:CDS 35.0%
GAAGAAAAAGAAATGCCCTT+TGG + chr3.2:61948412-61948431 MS.gene62249:CDS 35.0%
GAGGATATTGTTACATTCAC+TGG - chr3.2:61949218-61949237 None:intergenic 35.0%
GTAATGAGTACCAAAAGAAG+AGG + chr3.2:61949699-61949718 MS.gene62249:CDS 35.0%
GTTAAGATGGAGAATAGTTC+TGG + chr3.2:61948478-61948497 MS.gene62249:CDS 35.0%
TAAATGGAAGACATGGCAAT+TGG + chr3.2:61949334-61949353 MS.gene62249:CDS 35.0%
TAGCAAGGAAAGTAACAGAT+TGG + chr3.2:61948183-61948202 MS.gene62249:CDS 35.0%
TATTCTTTGAACCACATAGG+AGG + chr3.2:61949239-61949258 MS.gene62249:CDS 35.0%
TCATTTGATCTCAGTTTCAG+TGG - chr3.2:61948115-61948134 None:intergenic 35.0%
TTCCAACTCAAACAAAAGAG+GGG - chr3.2:61949672-61949691 None:intergenic 35.0%
TTCCAGAGGATCACAATAAA+TGG + chr3.2:61949318-61949337 MS.gene62249:CDS 35.0%
TTCCATTTATTGTGATCCTC+TGG - chr3.2:61949323-61949342 None:intergenic 35.0%
TTGGAGTTAGTTGTGAAGAA+TGG + chr3.2:61947977-61947996 MS.gene62249:CDS 35.0%
! ATTGATGTTGCTGTTATGGA+AGG + chr3.2:61948850-61948869 MS.gene62249:CDS 35.0%
! CTTTTGGTACTCATTACAAC+GGG - chr3.2:61949696-61949715 None:intergenic 35.0%
! TTTTCTGTTCTCTTCCTGTT+CGG - chr3.2:61948616-61948635 None:intergenic 35.0%
!! AAATATTGAGTTGGAACTGC+AGG + chr3.2:61948985-61949004 MS.gene62249:intron 35.0%
!! AATATTGAGTTGGAACTGCA+GGG + chr3.2:61948986-61949005 MS.gene62249:intron 35.0%
!! ACAAAGCTTTGGAAAAACAG+CGG + chr3.2:61949960-61949979 MS.gene62249:CDS 35.0%
!! TTGCGTTTGTTTTCCTTCTT+TGG - chr3.2:61950090-61950109 None:intergenic 35.0%
!!! AGGAGGTTTTGTTGATGATT+TGG + chr3.2:61949256-61949275 MS.gene62249:CDS 35.0%
!!! CCTACGTTCTGTTTTATTTG+CGG + chr3.2:61948319-61948338 MS.gene62249:CDS 35.0%
!!! CTACGTTCTGTTTTATTTGC+GGG + chr3.2:61948320-61948339 MS.gene62249:CDS 35.0%
!!! GGCAAATGAAGTGTTTTGAT+AGG - chr3.2:61949629-61949648 None:intergenic 35.0%
AAAGAAGTGGAGAAGGAAGA+AGG + chr3.2:61948768-61948787 MS.gene62249:CDS 40.0%
AACAGGTGATTGTCAATGCT+TGG + chr3.2:61947879-61947898 MS.gene62249:CDS 40.0%
AACCAACAAAGAAGTGGAGA+AGG + chr3.2:61948761-61948780 MS.gene62249:CDS 40.0%
AAGAAGTGGAGAAGGAAGAA+GGG + chr3.2:61948769-61948788 MS.gene62249:CDS 40.0%
AAGGAGAAAATTGACAACGG+AGG + chr3.2:61948903-61948922 MS.gene62249:CDS 40.0%
AATTCTGTCACCAAAGCTTC+TGG - chr3.2:61948814-61948833 None:intergenic 40.0%
ACTTTGCGGTCTGAATGATT+TGG + chr3.2:61949493-61949512 MS.gene62249:CDS 40.0%
AGACACAAAATTACCAGAGG+GGG + chr3.2:61948930-61948949 MS.gene62249:CDS 40.0%
ATCTTTGCAAACTCTCTGGT+TGG + chr3.2:61947815-61947834 MS.gene62249:CDS 40.0%
ATGGTAAAGCAGACCAAAGA+AGG + chr3.2:61950074-61950093 MS.gene62249:intron 40.0%
ATTTGGAAGATGGGCAACAA+TGG + chr3.2:61949273-61949292 MS.gene62249:CDS 40.0%
CAGACACAAAATTACCAGAG+GGG + chr3.2:61948929-61948948 MS.gene62249:CDS 40.0%
CAGGAAGAGAACAGAAAAAG+GGG + chr3.2:61948618-61948637 MS.gene62249:CDS 40.0%
CATCAACAAAACCTCCTATG+TGG - chr3.2:61949253-61949272 None:intergenic 40.0%
CCGCAAATAAAACAGAACGT+AGG - chr3.2:61948322-61948341 None:intergenic 40.0%
CTTTGCGGTCTGAATGATTT+GGG + chr3.2:61949494-61949513 MS.gene62249:CDS 40.0%
GAAAAAGGTAGCACTGTCAA+AGG + chr3.2:61947739-61947758 MS.gene62249:CDS 40.0%
GATAACAATATGTGGGCAGA+AGG + chr3.2:61949917-61949936 MS.gene62249:CDS 40.0%
GCACTCCCATATGAATTTGT+TGG - chr3.2:61949361-61949380 None:intergenic 40.0%
GCAGACACAAAATTACCAGA+GGG + chr3.2:61948928-61948947 MS.gene62249:CDS 40.0%
GCTTCCAACTCAAACAAAAG+AGG - chr3.2:61949674-61949693 None:intergenic 40.0%
GTATGCATCTCCATATCTGA+CGG - chr3.2:61948061-61948080 None:intergenic 40.0%
GTGATTGGTAAAGACGACAA+GGG + chr3.2:61948709-61948728 MS.gene62249:CDS 40.0%
GTTGAACAAATAGCTGAGAC+AGG + chr3.2:61948577-61948596 MS.gene62249:CDS 40.0%
TAACAATATGTGGGCAGAAG+GGG + chr3.2:61949919-61949938 MS.gene62249:CDS 40.0%
TAGTTGTGAAGAATGGTCCT+TGG + chr3.2:61947984-61948003 MS.gene62249:CDS 40.0%
TCAAAACACTTCATTTGCCG+AGG + chr3.2:61949630-61949649 MS.gene62249:CDS 40.0%
TCAGATATGGAGATGCATAC+TGG + chr3.2:61948061-61948080 MS.gene62249:CDS 40.0%
TGAAGATTCGTCCGTTGAAA+GGG - chr3.2:61947859-61947878 None:intergenic 40.0%
TGAGAACAAATGAGGTGATG+TGG + chr3.2:61949993-61950012 MS.gene62249:intron 40.0%
TGAGATCTTTGCAAACTCTC+TGG + chr3.2:61947811-61947830 MS.gene62249:CDS 40.0%
TGCAGACACAAAATTACCAG+AGG + chr3.2:61948927-61948946 MS.gene62249:CDS 40.0%
TGTGATTGGTAAAGACGACA+AGG + chr3.2:61948708-61948727 MS.gene62249:CDS 40.0%
TTCCTTCTCCACTTCTTTGT+TGG - chr3.2:61948766-61948785 None:intergenic 40.0%
TTCTTTGGTCTGCTTTACCA+TGG - chr3.2:61950075-61950094 None:intergenic 40.0%
TTGAAGATTCGTCCGTTGAA+AGG - chr3.2:61947860-61947879 None:intergenic 40.0%
! AAAGAAACTTGGTGATCTCC+TGG + chr3.2:61948141-61948160 MS.gene62249:CDS 40.0%
! AAGAAACTTGGTGATCTCCT+GGG + chr3.2:61948142-61948161 MS.gene62249:CDS 40.0%
! ACCTTCAAAGAGTACAGAAC+AGG + chr3.2:61949851-61949870 MS.gene62249:CDS 40.0%
! CCGTTGTCAATTTTCTCCTT+TGG - chr3.2:61948903-61948922 None:intergenic 40.0%
! CCTTCAAAGAGTACAGAACA+GGG + chr3.2:61949852-61949871 MS.gene62249:CDS 40.0%
! CTGAATGATTTGGGCTTTGA+AGG + chr3.2:61949503-61949522 MS.gene62249:CDS 40.0%
! CTTCAAAGAGTACAGAACAG+GGG + chr3.2:61949853-61949872 MS.gene62249:CDS 40.0%
! GAAGCTTTGGTGACAGAATT+AGG + chr3.2:61948814-61948833 MS.gene62249:CDS 40.0%
! GTGCAACAGAAGTTTGTTCT+CGG + chr3.2:61948504-61948523 MS.gene62249:CDS 40.0%
! TGAGGTCTTGTACTTCTACT+GGG - chr3.2:61947916-61947935 None:intergenic 40.0%
! TTCATATGGGAGTGCAAGAT+AGG + chr3.2:61949366-61949385 MS.gene62249:CDS 40.0%
! TTGAGGTCTTGTACTTCTAC+TGG - chr3.2:61947917-61947936 None:intergenic 40.0%
! TTTTGTATCGGGACAAACTG+TGG + chr3.2:61949136-61949155 MS.gene62249:CDS 40.0%
!! ATATTGAGTTGGAACTGCAG+GGG + chr3.2:61948987-61949006 MS.gene62249:intron 40.0%
!! CAAAGCTTTGGAAAAACAGC+GGG + chr3.2:61949961-61949980 MS.gene62249:CDS 40.0%
!! CCACTTCTTTGTTGGTTTCT+GGG - chr3.2:61948758-61948777 None:intergenic 40.0%
!! TCCACTTCTTTGTTGGTTTC+TGG - chr3.2:61948759-61948778 None:intergenic 40.0%
AAACGCAATCAAGAAGCTGC+GGG + chr3.2:61950102-61950121 MS.gene62249:CDS 45.0%
AAAGCCATAAACCCCAGTGA+AGG - chr3.2:61949300-61949319 None:intergenic 45.0%
AAAGGTAGCACTGTCAAAGG+AGG + chr3.2:61947742-61947761 MS.gene62249:CDS 45.0%
AAGAAATGCCCTTTGGCAAG+TGG + chr3.2:61948419-61948438 MS.gene62249:CDS 45.0%
AAGGAGGTTGACAGAGAGAA+GGG + chr3.2:61948541-61948560 MS.gene62249:CDS 45.0%
AATCAAGGATTGCGAGGACA+TGG + chr3.2:61948357-61948376 MS.gene62249:CDS 45.0%
ACACCAAATCAAGGATTGCG+AGG + chr3.2:61948351-61948370 MS.gene62249:CDS 45.0%
ACACTTCATTTGCCGAGGTA+TGG + chr3.2:61949635-61949654 MS.gene62249:CDS 45.0%
ACCCAATGGATCTATGCAGA+GGG + chr3.2:61948875-61948894 MS.gene62249:CDS 45.0%
ACTCTCTGGTTGGAAAGCTT+TGG + chr3.2:61947825-61947844 MS.gene62249:CDS 45.0%
AGAAGTGGAGAAGGAAGAAG+GGG + chr3.2:61948770-61948789 MS.gene62249:CDS 45.0%
AGATGCATACTGGTGAGTTC+TGG + chr3.2:61948071-61948090 MS.gene62249:CDS 45.0%
AGGAAGAAGGGGAGCAAAAA+AGG + chr3.2:61948781-61948800 MS.gene62249:CDS 45.0%
AGGTGATTGTCAATGCTTGG+AGG + chr3.2:61947882-61947901 MS.gene62249:CDS 45.0%
ATACAGTGCAGACTTGACAG+AGG + chr3.2:61949569-61949588 MS.gene62249:CDS 45.0%
ATGAGGTGATGTGGAGACAA+AGG + chr3.2:61950002-61950021 MS.gene62249:intron 45.0%
ATTCTCGTCGAAGAGGGATT+TGG + chr3.2:61947958-61947977 MS.gene62249:CDS 45.0%
CAAACGCAATCAAGAAGCTG+CGG + chr3.2:61950101-61950120 MS.gene62249:CDS 45.0%
CAACGGACGAATCTTCAAAC+AGG + chr3.2:61947862-61947881 MS.gene62249:CDS 45.0%
CAAGATAGGTGGTTGTGTGT+GGG + chr3.2:61949380-61949399 MS.gene62249:CDS 45.0%
CACTTCATTTGCCGAGGTAT+GGG + chr3.2:61949636-61949655 MS.gene62249:CDS 45.0%
CCCAGAAACCAACAAAGAAG+TGG + chr3.2:61948755-61948774 MS.gene62249:CDS 45.0%
CCCTGTTCTGTACTCTTTGA+AGG - chr3.2:61949855-61949874 None:intergenic 45.0%
CTCCTTTGCCAAAGATCACT+GGG + chr3.2:61948452-61948471 MS.gene62249:CDS 45.0%
CTCTGTCAACCTCCTTACTT+TGG - chr3.2:61948537-61948556 None:intergenic 45.0%
GAAGAAGGGGAGCAAAAAAG+GGG + chr3.2:61948783-61948802 MS.gene62249:CDS 45.0%
GAGGTAATGCTAGATCGACA+GGG + chr3.2:61949441-61949460 MS.gene62249:CDS 45.0%
GATGCGAGCTTACAAAGCTT+TGG + chr3.2:61949949-61949968 MS.gene62249:CDS 45.0%
GGAACGGTCATCAAGTATCA+AGG + chr3.2:61948259-61948278 MS.gene62249:CDS 45.0%
GGAAGAAGGGGAGCAAAAAA+GGG + chr3.2:61948782-61948801 MS.gene62249:CDS 45.0%
GTTTCGATTCTCGTCGAAGA+GGG + chr3.2:61947952-61947971 MS.gene62249:CDS 45.0%
TAAGGAGGTTGACAGAGAGA+AGG + chr3.2:61948540-61948559 MS.gene62249:CDS 45.0%
TAAGGATGAGGCAGAGTTTG+AGG + chr3.2:61948384-61948403 MS.gene62249:CDS 45.0%
TCAAAGGAGGAGGAAGAAGA+GGG + chr3.2:61947755-61947774 MS.gene62249:CDS 45.0%
TCCTTTGCCAAAGATCACTG+GGG + chr3.2:61948453-61948472 MS.gene62249:CDS 45.0%
TCTCCTTTGCCAAAGATCAC+TGG + chr3.2:61948451-61948470 MS.gene62249:CDS 45.0%
TGATGTGGAGACAAAGGAGT+CGG + chr3.2:61950008-61950027 MS.gene62249:intron 45.0%
TGTCCTCGCAATCCTTGATT+TGG - chr3.2:61948357-61948376 None:intergenic 45.0%
TGTTATGGAAGGAGACCCAA+TGG + chr3.2:61948861-61948880 MS.gene62249:CDS 45.0%
TGTTTCGATTCTCGTCGAAG+AGG + chr3.2:61947951-61947970 MS.gene62249:CDS 45.0%
TTAACCTCCCCAGTGATCTT+TGG - chr3.2:61948463-61948482 None:intergenic 45.0%
TTTGGTAAGGAAAGAGCTGG+TGG + chr3.2:61949170-61949189 MS.gene62249:CDS 45.0%
! AAAATTACCAGAGGGGGTGT+TGG + chr3.2:61948936-61948955 MS.gene62249:intron 45.0%
! ACTGTGGAGTGTAGTGGTTT+TGG + chr3.2:61949152-61949171 MS.gene62249:CDS 45.0%
! AGAAACTTGGTGATCTCCTG+GGG + chr3.2:61948143-61948162 MS.gene62249:CDS 45.0%
! ATATGGGAGTGCAAGATAGG+TGG + chr3.2:61949369-61949388 MS.gene62249:CDS 45.0%
! ATGGTCCTTGGAGCTTTGAT+AGG + chr3.2:61947996-61948015 MS.gene62249:CDS 45.0%
! CAAATGGTAGGTTGAGCGAT+GGG + chr3.2:61949543-61949562 MS.gene62249:CDS 45.0%
! CAACAGAAGTTTGTTCTCGG+AGG + chr3.2:61948507-61948526 MS.gene62249:CDS 45.0%
! TCAAATGGTAGGTTGAGCGA+TGG + chr3.2:61949542-61949561 MS.gene62249:CDS 45.0%
! TTCATTGGGATAGGAGGTGT+TGG - chr3.2:61948966-61948985 None:intergenic 45.0%
!! GGTTTTGGTAAGGAAAGAGC+TGG + chr3.2:61949167-61949186 MS.gene62249:CDS 45.0%
!! GTGATTCTAAAGCGCATCTC+AGG + chr3.2:61948025-61948044 MS.gene62249:CDS 45.0%
!! TATTGAGTTGGAACTGCAGG+GGG + chr3.2:61948988-61949007 MS.gene62249:intron 45.0%
!! TGCCCCTCTTTTGTTTGAGT+TGG + chr3.2:61949667-61949686 MS.gene62249:CDS 45.0%
!!! GGAGTGTAGTGGTTTTGGTA+AGG + chr3.2:61949157-61949176 MS.gene62249:CDS 45.0%
AAAAGGGGTAGTAACGAGCC+CGG + chr3.2:61948633-61948652 MS.gene62249:CDS 50.0%
AAGGATTGCGAGGACATGGA+TGG + chr3.2:61948361-61948380 MS.gene62249:CDS 50.0%
ACAAATAGCTGAGACAGGCG+AGG + chr3.2:61948582-61948601 MS.gene62249:CDS 50.0%
AGATGGTGTGGAGGAATGTG+GGG + chr3.2:61947787-61947806 MS.gene62249:CDS 50.0%
AGGAGGTTGACAGAGAGAAG+GGG + chr3.2:61948542-61948561 MS.gene62249:CDS 50.0%
AGGGGTCATTCCAGAAGCTT+TGG + chr3.2:61948801-61948820 MS.gene62249:CDS 50.0%
ATCTATGCAGAGGGGACCAA+AGG + chr3.2:61948884-61948903 MS.gene62249:CDS 50.0%
ATGACCGTTCCTCGTTTCAG+TGG - chr3.2:61948250-61948269 None:intergenic 50.0%
CAAACGGATGAGCCTTGACA+AGG - chr3.2:61949039-61949058 None:intergenic 50.0%
CAGATGGTGTGGAGGAATGT+GGG + chr3.2:61947786-61947805 MS.gene62249:CDS 50.0%
CCACACTCTCTACTTCAACC+GGG - chr3.2:61948654-61948673 None:intergenic 50.0%
CCCAATGGATCTATGCAGAG+GGG + chr3.2:61948876-61948895 MS.gene62249:CDS 50.0%
CCCCTCTGCATAGATCCATT+GGG - chr3.2:61948879-61948898 None:intergenic 50.0%
CTTGTCAAGGCTCATCCGTT+TGG + chr3.2:61949037-61949056 MS.gene62249:intron 50.0%
GAAGCCACTGAAACGAGGAA+CGG + chr3.2:61948243-61948262 MS.gene62249:CDS 50.0%
GACCCAATGGATCTATGCAG+AGG + chr3.2:61948874-61948893 MS.gene62249:CDS 50.0%
GAGCACCAACCCATTGTATC+AGG + chr3.2:61949798-61949817 MS.gene62249:CDS 50.0%
GATCACTGGGGAGGTTAAGA+TGG + chr3.2:61948465-61948484 MS.gene62249:CDS 50.0%
GATGTGGAGACAAAGGAGTC+GGG + chr3.2:61950009-61950028 MS.gene62249:intron 50.0%
GATTCGTCCGTTGAAAGGGT+CGG - chr3.2:61947855-61947874 None:intergenic 50.0%
GCAACAATGGTCCTTCACTG+GGG + chr3.2:61949286-61949305 MS.gene62249:CDS 50.0%
GCAAGATAGGTGGTTGTGTG+TGG + chr3.2:61949379-61949398 MS.gene62249:CDS 50.0%
GCATGATCAGACCCATACCT+CGG - chr3.2:61949650-61949669 None:intergenic 50.0%
GCCACACTCTCTACTTCAAC+CGG - chr3.2:61948655-61948674 None:intergenic 50.0%
GGACAAACTGTGGAGTGTAG+TGG + chr3.2:61949146-61949165 MS.gene62249:CDS 50.0%
GGACATGGATGGTAAGGATG+AGG + chr3.2:61948372-61948391 MS.gene62249:CDS 50.0%
GGAGGTAATGCTAGATCGAC+AGG + chr3.2:61949440-61949459 MS.gene62249:CDS 50.0%
GGCAACAATGGTCCTTCACT+GGG + chr3.2:61949285-61949304 MS.gene62249:CDS 50.0%
GTCAAAGGAGGAGGAAGAAG+AGG + chr3.2:61947754-61947773 MS.gene62249:CDS 50.0%
GTTCGTAGAGGTGGATAGCA+AGG + chr3.2:61948168-61948187 MS.gene62249:CDS 50.0%
TAAGGAAAGAGCTGGTGGTC+TGG + chr3.2:61949175-61949194 MS.gene62249:CDS 50.0%
TCCCCAGTGATCTTTGGCAA+AGG - chr3.2:61948457-61948476 None:intergenic 50.0%
TCCCCTCTGCATAGATCCAT+TGG - chr3.2:61948880-61948899 None:intergenic 50.0%
TGGGGTTTATGGCTTTCCAG+AGG + chr3.2:61949304-61949323 MS.gene62249:CDS 50.0%
TGGTCCTTCACTGGGGTTTA+TGG + chr3.2:61949293-61949312 MS.gene62249:CDS 50.0%
TTGAGGAAGCCACTGAAACG+AGG + chr3.2:61948238-61948257 MS.gene62249:CDS 50.0%
TTGCGAGGACATGGATGGTA+AGG + chr3.2:61948366-61948385 MS.gene62249:CDS 50.0%
TTTGCCAAAGATCACTGGGG+AGG + chr3.2:61948456-61948475 MS.gene62249:CDS 50.0%
! GTTGGTTTCTGGGCTTCACT+TGG - chr3.2:61948748-61948767 None:intergenic 50.0%
AGGCGTGCGATGGAACTTTG+CGG + chr3.2:61949479-61949498 MS.gene62249:CDS 55.0%
AGTTGGAACTGCAGGGGGTT+GGG + chr3.2:61948993-61949012 MS.gene62249:intron 55.0%
CAGAGAGAAGGGGAAGGATG+TGG + chr3.2:61948552-61948571 MS.gene62249:CDS 55.0%
CAGGGCAGTTGCTTCATGGT+AGG + chr3.2:61949459-61949478 MS.gene62249:CDS 55.0%
CCCGGTTGAAGTAGAGAGTG+TGG + chr3.2:61948651-61948670 MS.gene62249:CDS 55.0%
CGAGGAGCAACCGTCAGATA+TGG + chr3.2:61948048-61948067 MS.gene62249:CDS 55.0%
CGGGCTGTTTGGTTGAAGGA+TGG + chr3.2:61950028-61950047 MS.gene62249:intron 55.0%
CTTGTTGCGAACGAGAAGCG+AGG + chr3.2:61949419-61949438 MS.gene62249:CDS 55.0%
GAAGAGGGTTTCGTGGCAGA+TGG + chr3.2:61947770-61947789 MS.gene62249:CDS 55.0%
GACAAAGGAGTCGGGCTGTT+TGG + chr3.2:61950017-61950036 MS.gene62249:intron 55.0%
GAGTCGGGCTGTTTGGTTGA+AGG + chr3.2:61950024-61950043 MS.gene62249:intron 55.0%
GCAGATGGTGTGGAGGAATG+TGG + chr3.2:61947785-61947804 MS.gene62249:CDS 55.0%
GCTCGCAACCACTTGCCAAA+GGG - chr3.2:61948430-61948449 None:intergenic 55.0%
GGAGGAAGAAGAGGGTTTCG+TGG + chr3.2:61947763-61947782 MS.gene62249:CDS 55.0%
GGGCAACAATGGTCCTTCAC+TGG + chr3.2:61949284-61949303 MS.gene62249:CDS 55.0%
GGTAGCACTGTCAAAGGAGG+AGG + chr3.2:61947745-61947764 MS.gene62249:CDS 55.0%
GGTTGACAGAGAGAAGGGGA+AGG + chr3.2:61948546-61948565 MS.gene62249:CDS 55.0%
GTGCAGACTTGACAGAGGCT+TGG + chr3.2:61949574-61949593 MS.gene62249:CDS 55.0%
TCGACAGGGCAGTTGCTTCA+TGG + chr3.2:61949455-61949474 MS.gene62249:CDS 55.0%
TCTCCTGGGGAAGTTCGTAG+AGG + chr3.2:61948156-61948175 MS.gene62249:CDS 55.0%
TGGACCACCGACCCTTTCAA+CGG + chr3.2:61947845-61947864 MS.gene62249:CDS 55.0%
TTTCGTGGCAGATGGTGTGG+AGG + chr3.2:61947778-61947797 MS.gene62249:CDS 55.0%
! AGATGGTGTGTGGTGGAGAG+GGG + chr3.2:61950129-61950148 MS.gene62249:CDS 55.0%
! CAGATGGTGTGTGGTGGAGA+GGG + chr3.2:61950128-61950147 MS.gene62249:CDS 55.0%
! CTCGGAGGCTAGCCAAAGTA+AGG + chr3.2:61948522-61948541 MS.gene62249:CDS 55.0%
! GGAGGCTAGCCAAAGTAAGG+AGG + chr3.2:61948525-61948544 MS.gene62249:CDS 55.0%
! TCTAAAGCGCATCTCAGGCG+AGG + chr3.2:61948030-61948049 MS.gene62249:CDS 55.0%
! TGGCAGTTCGAGCCTTGTCA+AGG + chr3.2:61949024-61949043 MS.gene62249:intron 55.0%
!! TGGTCTGGCTTTGCTCTGGA+GGG + chr3.2:61949190-61949209 MS.gene62249:CDS 55.0%
AAGAAGCTGCGGGACGCAGA+TGG + chr3.2:61950112-61950131 MS.gene62249:CDS 60.0%
ACAAGGCTCGAACTGCCAGC+GGG - chr3.2:61949022-61949041 None:intergenic 60.0%
CCACCTCTACGAACTTCCCC+AGG - chr3.2:61948162-61948181 None:intergenic 60.0%
CCTGGGGAAGTTCGTAGAGG+TGG + chr3.2:61948159-61948178 MS.gene62249:CDS 60.0%
CGCTCGCAACCACTTGCCAA+AGG - chr3.2:61948431-61948450 None:intergenic 60.0%
GACAAGGCTCGAACTGCCAG+CGG - chr3.2:61949023-61949042 None:intergenic 60.0%
GAGTTGGAACTGCAGGGGGT+TGG + chr3.2:61948992-61949011 MS.gene62249:intron 60.0%
GCGAGGATGCTCATCCGAAC+AGG + chr3.2:61948599-61948618 MS.gene62249:CDS 60.0%
GCTTCATGGTAGGCGTGCGA+TGG + chr3.2:61949469-61949488 MS.gene62249:CDS 60.0%
GGGTTTCGTGGCAGATGGTG+TGG + chr3.2:61947775-61947794 MS.gene62249:CDS 60.0%
GTTGCGAACGAGAAGCGAGG+AGG + chr3.2:61949422-61949441 MS.gene62249:CDS 60.0%
GTTGGAACTGCAGGGGGTTG+GGG + chr3.2:61948994-61949013 MS.gene62249:intron 60.0%
TCGTCCGTTGAAAGGGTCGG+TGG - chr3.2:61947852-61947871 None:intergenic 60.0%
TGGTCATCCAACACCCCCTC+TGG - chr3.2:61948946-61948965 None:intergenic 60.0%
! GCAGATGGTGTGTGGTGGAG+AGG + chr3.2:61950127-61950146 MS.gene62249:CDS 60.0%
!! CTGGTGGTCTGGCTTTGCTC+TGG + chr3.2:61949186-61949205 MS.gene62249:CDS 60.0%
!! GTGGTCTGGCTTTGCTCTGG+AGG + chr3.2:61949189-61949208 MS.gene62249:CDS 60.0%
GGGACGCAGATGGTGTGTGG+TGG + chr3.2:61950122-61950141 MS.gene62249:CDS 65.0%
TGCGGGACGCAGATGGTGTG+TGG + chr3.2:61950119-61950138 MS.gene62249:CDS 65.0%
CAGGGGGTTGGGGAACCCGC+TGG + chr3.2:61949004-61949023 MS.gene62249:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 61947728 61950163 61947728 ID=MS.gene62249
chr3.2 mRNA 61947728 61950163 61947728 ID=MS.gene62249.t1;Parent=MS.gene62249
chr3.2 exon 61947728 61948951 61947728 ID=MS.gene62249.t1.exon1;Parent=MS.gene62249.t1
chr3.2 CDS 61947728 61948951 61947728 ID=cds.MS.gene62249.t1;Parent=MS.gene62249.t1
chr3.2 exon 61949125 61950006 61949125 ID=MS.gene62249.t1.exon2;Parent=MS.gene62249.t1
chr3.2 CDS 61949125 61950006 61949125 ID=cds.MS.gene62249.t1;Parent=MS.gene62249.t1
chr3.2 exon 61950086 61950163 61950086 ID=MS.gene62249.t1.exon3;Parent=MS.gene62249.t1
chr3.2 CDS 61950086 61950163 61950086 ID=cds.MS.gene62249.t1;Parent=MS.gene62249.t1
Gene Sequence

>MS.gene62249

ATGGAAAACTGGAAAAAGGTAGCACTGTCAAAGGAGGAGGAAGAAGAGGGTTTCGTGGCAGATGGTGTGGAGGAATGTGGGGATGAGATCTTTGCAAACTCTCTGGTTGGAAAGCTTTGGACCACCGACCCTTTCAACGGACGAATCTTCAAACAGGTGATTGTCAATGCTTGGAGGCTGAAGAACCCAGTAGAAGTACAAGACCTCAACAAGAATCTTTTTCTGTTTCGATTCTCGTCGAAGAGGGATTTGGAGTTAGTTGTGAAGAATGGTCCTTGGAGCTTTGATAGGAATATTGTGATTCTAAAGCGCATCTCAGGCGAGGAGCAACCGTCAGATATGGAGATGCATACTGGTGAGTTCTGGACTAGAATATACGATTTACCACTGAAACTGAGATCAAATGAGATGGCAAAGAAACTTGGTGATCTCCTGGGGAAGTTCGTAGAGGTGGATAGCAAGGAAAGTAACAGATTGGGTTGCTTTCTCCGAGTCAAAGCAAATATAGATTTGAGGAAGCCACTGAAACGAGGAACGGTCATCAAGTATCAAGGTAAAAATCTCCGAATCTTTTTCAAGTATGAACGGTTGCCTACGTTCTGTTTTATTTGCGGGAAAATAGGACACCAAATCAAGGATTGCGAGGACATGGATGGTAAGGATGAGGCAGAGTTTGAGGAATTAGAAGAAAAAGAAATGCCCTTTGGCAAGTGGTTGCGAGCGTCTCCTTTGCCAAAGATCACTGGGGAGGTTAAGATGGAGAATAGTTCTGGGTCGTGCAACAGAAGTTTGTTCTCGGAGGCTAGCCAAAGTAAGGAGGTTGACAGAGAGAAGGGGAAGGATGTGGTAGTTGAACAAATAGCTGAGACAGGCGAGGATGCTCATCCGAACAGGAAGAGAACAGAAAAAGGGGTAGTAACGAGCCCGGTTGAAGTAGAGAGTGTGGCTGAATCTTTAAGCGCAGTAGCAATTTCCAAATTTGTGATTGGTAAAGACGACAAGGGTTCTCACACTAAGCCAAGTGAAGCCCAGAAACCAACAAAGAAGTGGAGAAGGAAGAAGGGGAGCAAAAAAGGGGTCATTCCAGAAGCTTTGGTGACAGAATTAGGCAAAAGACAATTAATTGATGTTGCTGTTATGGAAGGAGACCCAATGGATCTATGCAGAGGGGACCAAAGGAGAAAATTGACAACGGAGGATGCAGACACAAAATTACCAGAGGGGGTGTTGGATGACCAACACCTCCTATCCCAATGAAAATATTGAGTTGGAACTGCAGGGGGTTGGGGAACCCGCTGGCAGTTCGAGCCTTGTCAAGGCTCATCCGTTTGGAAAATCCCAATTTAGTCTTCTTAATGGAGACTCGTCTTAAAGATTTTGAAATGTTAAGGGTGAAGTTTAAATGTGGTTTTGTATCGGGACAAACTGTGGAGTGTAGTGGTTTTGGTAAGGAAAGAGCTGGTGGTCTGGCTTTGCTCTGGAGGGAGCCAGTGAATGTAACAATATCCTCTTATTCTTTGAACCACATAGGAGGTTTTGTTGATGATTTGGAAGATGGGCAACAATGGTCCTTCACTGGGGTTTATGGCTTTCCAGAGGATCACAATAAATGGAAGACATGGCAATTGGTCCAACAAATTCATATGGGAGTGCAAGATAGGTGGTTGTGTGTGGGTGATTTTAATGACATTCTTGTTGCGAACGAGAAGCGAGGAGGTAATGCTAGATCGACAGGGCAGTTGCTTCATGGTAGGCGTGCGATGGAACTTTGCGGTCTGAATGATTTGGGCTTTGAAGGTTATCCTTATACTTGGTCAAATGGTAGGTTGAGCGATGGGAATATACAGTGCAGACTTGACAGAGGCTTGGCAACAGAGAGTTTTATCAATAGATTCTCACCTATCAAAACACTTCATTTGCCGAGGTATGGGTCTGATCATGCCCCTCTTTTGTTTGAGTTGGAAGCCCGTTGTAATGAGTACCAAAAGAAGAGGAATCACATTTTCAGATTTGAAGAAGCTTGGTCCAAAGATGAGAGATGTGAAGATTTAATCAAAGAAGCTTGGTTCAGAGCACCAACCCATTGTATCAGGAAATTACAGTCAGTTCAAGTGCTAGATGAAACCTTCAAAGAGTACAGAACAGGGGCTGTCATGAAAGAAATAAAAAGAATTGAAGACATGCTCAAAGATAACAATATGTGGGCAGAAGGGGAGAATGAGATGCGAGCTTACAAAGCTTTGGAAAAACAGCGGGACAATTTAATGAGAACAAATGAGGTGATGTGGAGACAAAGGAGTCGGGCTGTTTGGTTGAAGGATGGTGACAGAAACACAAAGTTCTTCCATGGTAAAGCAGACCAAAGAAGGAAAACAAACGCAATCAAGAAGCTGCGGGACGCAGATGGTGTGTGGTGGAGAGGGGATGAGCATGTAG
Protein sequence

>MS.gene62249.t1

MENWKKVALSKEEEEEGFVADGVEECGDEIFANSLVGKLWTTDPFNGRIFKQVIVNAWRLKNPVEVQDLNKNLFLFRFSSKRDLELVVKNGPWSFDRNIVILKRISGEEQPSDMEMHTGEFWTRIYDLPLKLRSNEMAKKLGDLLGKFVEVDSKESNRLGCFLRVKANIDLRKPLKRGTVIKYQGKNLRIFFKYERLPTFCFICGKIGHQIKDCEDMDGKDEAEFEELEEKEMPFGKWLRASPLPKITGEVKMENSSGSCNRSLFSEASQSKEVDREKGKDVVVEQIAETGEDAHPNRKRTEKGVVTSPVEVESVAESLSAVAISKFVIGKDDKGSHTKPSEAQKPTKKWRRKKGSKKGVIPEALVTELGKRQLIDVAVMEGDPMDLCRGDQRRKLTTEDADTKLPEGFKCGFVSGQTVECSGFGKERAGGLALLWREPVNVTISSYSLNHIGGFVDDLEDGQQWSFTGVYGFPEDHNKWKTWQLVQQIHMGVQDRWLCVGDFNDILVANEKRGGNARSTGQLLHGRRAMELCGLNDLGFEGYPYTWSNGRLSDGNIQCRLDRGLATESFINRFSPIKTLHLPRYGSDHAPLLFELEARCNEYQKKRNHIFRFEEAWSKDERCEDLIKEAWFRAPTHCIRKLQSVQVLDETFKEYRTGAVMKEIKRIEDMLKDNNMWAEGENEMRAYKALEKQRDNLMRTNETKEGKQTQSRSCGTQMVCGGEGMSM