AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022929


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022929.t1 MTR_3g053920 52.303 304 79 3 1 304 1 238 6.41e-105 310
MS.gene022929.t1 MTR_2g061500 74.419 129 33 0 1 129 1 129 9.63e-69 213
MS.gene022929.t1 MTR_7g011710 84.706 85 13 0 55 139 1 85 6.44e-47 157
MS.gene022929.t1 MTR_4g103530 68.000 100 30 1 55 154 1 98 5.20e-43 148
MS.gene022929.t1 MTR_6g033215 34.503 171 110 1 31 199 124 294 5.97e-34 127
MS.gene022929.t1 MTR_0010s0370 32.386 176 117 1 4 177 2 177 2.36e-26 104
MS.gene022929.t1 MTR_0010s0350 32.386 176 117 1 4 177 2 177 2.36e-26 104
MS.gene022929.t1 MTR_1g036720 32.692 104 68 1 11 112 7 110 3.64e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022929.t1 AT2G17920 25.352 213 153 3 8 216 9 219 3.75e-18 84.3
MS.gene022929.t1 AT5G36228 27.461 193 136 2 36 226 39 229 4.59e-17 82.0
MS.gene022929.t1 AT2G41590 26.829 164 116 2 55 216 58 219 5.18e-16 79.0
MS.gene022929.t1 AT3G57587 28.667 150 99 4 71 216 74 219 5.89e-16 78.6
MS.gene022929.t1 AT3G31430 27.174 184 124 4 36 215 134 311 3.73e-14 73.2
MS.gene022929.t1 AT2G02103 26.220 164 117 2 55 216 58 219 1.04e-13 72.4
MS.gene022929.t1 AT2G13450 25.683 183 132 2 35 215 38 218 1.08e-13 72.0
MS.gene022929.t1 AT5G25200 25.610 164 118 2 55 216 58 219 1.09e-13 72.0
MS.gene022929.t1 AT5G18636 25.610 164 118 2 55 216 58 219 1.14e-13 72.0
MS.gene022929.t1 AT3G47920 26.000 150 103 4 71 216 3 148 3.62e-12 67.0
MS.gene022929.t1 AT4G02000 27.206 136 95 2 83 216 6 139 1.79e-11 65.1

Find 112 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATGACGGCGTTCGTAAT+TGG 0.151505 7.4:+47577123 MS.gene022929:CDS
CAGACTCAGTGGCGAGGTTT+AGG 0.233947 7.4:-47576512 None:intergenic
ATCCTTAAGCCATTTGTTAT+TGG 0.253429 7.4:-47577189 None:intergenic
AGCAGCAGGCATGGGAGCTT+GGG 0.266517 7.4:-47577243 None:intergenic
TTTGGCTGATCGTGAGATTC+AGG 0.308864 7.4:+47576575 MS.gene022929:CDS
TTTGGCTGATTACAACAAAA+AGG 0.311916 7.4:-47576843 None:intergenic
CAGCAGCAGGCATGGGAGCT+TGG 0.315778 7.4:-47577244 None:intergenic
AGACTCAGTGGCGAGGTTTA+GGG 0.329947 7.4:-47576511 None:intergenic
AAACCGGTTGCTTCTCGTAT+TGG 0.332821 7.4:+47577158 MS.gene022929:CDS
CCCTCAAGTCTCAATATTGC+TGG 0.350835 7.4:+47576462 MS.gene022929:CDS
TGATGACGGCGTTCGTAATT+GGG 0.361931 7.4:+47577124 MS.gene022929:CDS
CCAAATGTTGGTCAGGGTAT+AGG 0.371467 7.4:+47576861 MS.gene022929:CDS
ACCTGAACCATATGGACATC+TGG 0.375036 7.4:+47576802 MS.gene022929:CDS
CAAGCTCCCATGCCTGCTGC+TGG 0.379709 7.4:+47577245 MS.gene022929:CDS
GACATCTGGGTTCAGGTTCA+TGG 0.384445 7.4:+47576816 MS.gene022929:CDS
AGCCATACGCTCGCTGAAAT+AGG 0.391985 7.4:-47576601 None:intergenic
CCCAGATGTCCATATGGTTC+AGG 0.402215 7.4:-47576803 None:intergenic
CCTATACCCTGACCAACATT+TGG 0.404583 7.4:-47576861 None:intergenic
CCATATGGACATCTGGGTTC+AGG 0.407479 7.4:+47576809 MS.gene022929:CDS
TTGCCCGGACTTGTTCGAAT+TGG 0.408985 7.4:+47577097 MS.gene022929:CDS
TAATCAGCCAAATGTTGGTC+AGG 0.412014 7.4:+47576854 MS.gene022929:CDS
CTGTTTGGTAGGACGTGTTT+TGG 0.412271 7.4:+47576557 MS.gene022929:CDS
CACCATCCTCGATCACTGTT+TGG 0.415170 7.4:+47576542 MS.gene022929:CDS
GAGGATGACCAGGATGTTAC+GGG 0.426442 7.4:+47577533 MS.gene022929:CDS
ATGGCTCGTGCTTGGAAGCC+AGG 0.426942 7.4:+47576618 MS.gene022929:CDS
AAGTGCTGTGGATGGTATTA+CGG 0.434613 7.4:-47576917 None:intergenic
GCAGGTAAACCGAGCACCAC+TGG 0.435384 7.4:-47577485 None:intergenic
TGAAAGTTGCGGCCAGCAGC+AGG 0.439396 7.4:-47577257 None:intergenic
TGCCAATAACAAATGGCTTA+AGG 0.440251 7.4:+47577187 MS.gene022929:CDS
TTGCGGCCAGCAGCAGGCAT+GGG 0.441899 7.4:-47577251 None:intergenic
TGAGGATGACCAGGATGTTA+CGG 0.444088 7.4:+47577532 MS.gene022929:CDS
ACAATAGAGACTCGCTTGCC+TGG 0.445919 7.4:-47576636 None:intergenic
ATCTGTCGACCTGAACCATA+TGG 0.449199 7.4:+47576794 MS.gene022929:CDS
GCTTCCAATTCGAACAAGTC+CGG 0.452234 7.4:-47577101 None:intergenic
GAAGCAACCGGTTTCAGATC+AGG 0.453087 7.4:-47577149 None:intergenic
GTCTCTATTGTCAAAACTGA+TGG 0.462232 7.4:+47576648 MS.gene022929:CDS
CAGGGTATAGGTAGCTATCT+AGG 0.468939 7.4:+47576873 MS.gene022929:CDS
TCAGATTCCTCACTTGTAAA+CGG 0.473482 7.4:-47577512 None:intergenic
CCTGAACCCAGATGTCCATA+TGG 0.477535 7.4:-47576809 None:intergenic
GTTGCGGCCAGCAGCAGGCA+TGG 0.478318 7.4:-47577252 None:intergenic
CCGGGCAAACCTTGTCTGAA+TGG 0.485324 7.4:-47577082 None:intergenic
CCAGCAATATTGAGACTTGA+GGG 0.485345 7.4:-47576462 None:intergenic
TGTTACAGGTGCGGACTGCT+TGG 0.488132 7.4:+47577059 MS.gene022929:CDS
TGCCTATTTCAGCGAGCGTA+TGG 0.489265 7.4:+47576599 MS.gene022929:CDS
GCTGCCCGTGTTCTTGATGA+TGG 0.490201 7.4:+47576708 MS.gene022929:CDS
CCATTCAGACAAGGTTTGCC+CGG 0.499540 7.4:+47577082 MS.gene022929:CDS
GTCATGGACCGTATACAACC+TGG 0.499758 7.4:+47576759 MS.gene022929:CDS
GTTCAGCTGCCAATAACAAA+TGG 0.501013 7.4:+47577180 MS.gene022929:CDS
TGGTTCAGGTCGACAGATGT+AGG 0.502239 7.4:-47576789 None:intergenic
GCGAGCGTATGGCTCGTGCT+TGG 0.503834 7.4:+47576610 MS.gene022929:CDS
TGGAAAGTCCGTGTTAGTAC+TGG 0.506120 7.4:+47576990 MS.gene022929:CDS
AGGTAAAAGATGCACTTGAC+AGG 0.509394 7.4:-47577417 None:intergenic
GTTTGTCTCGGCACAACAGA+TGG 0.513246 7.4:-47577218 None:intergenic
GCTGGCCGCAACTTTCATCC+AGG 0.513777 7.4:+47577263 MS.gene022929:CDS
ACTAGCAACATGCTTCACTT+TGG 0.515126 7.4:-47577384 None:intergenic
GAAAATTATCATACAGCCAT+GGG 0.515399 7.4:-47576731 None:intergenic
TTGGGGACCTGATCTGAAAC+CGG 0.517910 7.4:+47577142 MS.gene022929:CDS
GGACAACCCCAGGTTGTATA+CGG 0.519072 7.4:-47576767 None:intergenic
ACAGGTTGCCCAGTGGTGCT+CGG 0.520634 7.4:+47577476 MS.gene022929:CDS
TCACTTGTAAACGGAGCAGC+AGG 0.527702 7.4:-47577503 None:intergenic
AAATTTAAGTATGAGAAACT+TGG 0.529182 7.4:+47577029 MS.gene022929:CDS
TGGTTTAACCATTGCTGAAG+AGG 0.530085 7.4:+47576482 MS.gene022929:CDS
CTTCCAATTCGAACAAGTCC+GGG 0.531082 7.4:-47577100 None:intergenic
TCAGCTTCCACACTCATCAC+AGG 0.531993 7.4:+47577458 MS.gene022929:CDS
TTCGAATTGGAAGCTGATGA+CGG 0.535228 7.4:+47577110 MS.gene022929:CDS
GGAGCTTGGGGAGTTTGTCT+CGG 0.539891 7.4:-47577230 None:intergenic
TGAAAATTATCATACAGCCA+TGG 0.541083 7.4:-47576732 None:intergenic
TGAGGAATCTGAGGATGACC+AGG 0.548864 7.4:+47577523 MS.gene022929:CDS
GGTTTAACCATTGCTGAAGA+GGG 0.548896 7.4:+47576483 MS.gene022929:CDS
GAACCAATACGAGAAGCAAC+CGG 0.551481 7.4:-47577161 None:intergenic
GCAGCAGGCATGGGAGCTTG+GGG 0.551902 7.4:-47577242 None:intergenic
TGTTGTAATCAGCCAAATGT+TGG 0.554828 7.4:+47576849 MS.gene022929:CDS
TCTCTATTGTCAAAACTGAT+GGG 0.556196 7.4:+47576649 MS.gene022929:CDS
GTTCTGAACCCGTAACATCC+TGG 0.558247 7.4:-47577541 None:intergenic
GGTTAAACCCTCTTCAGCAA+TGG 0.558439 7.4:-47576490 None:intergenic
ACCAGCAATATTGAGACTTG+AGG 0.558584 7.4:-47576463 None:intergenic
TTGAGACTTGAGGGATCCAT+AGG 0.568944 7.4:-47576453 None:intergenic
GGTTCAGGTCGACAGATGTA+GGG 0.573327 7.4:-47576788 None:intergenic
ATCCTCGATCACTGTTTGGT+AGG 0.585067 7.4:+47576546 MS.gene022929:CDS
CAGGTAAACCGAGCACCACT+GGG 0.586382 7.4:-47577484 None:intergenic
TCATGGACCGTATACAACCT+GGG 0.587245 7.4:+47576760 MS.gene022929:CDS
ACCGCACTAGCAGCACCACC+TGG 0.589399 7.4:-47577281 None:intergenic
TGCTGCTCCGTTTACAAGTG+AGG 0.594642 7.4:+47577505 MS.gene022929:CDS
TTTGTCTCGGCACAACAGAT+GGG 0.598784 7.4:-47577217 None:intergenic
CCTGAACCATATGGACATCT+GGG 0.599548 7.4:+47576803 MS.gene022929:CDS
CAGAACTTAAGAAGAGGACG+AGG 0.599784 7.4:+47577558 MS.gene022929:CDS
GATGACGGCGTTCGTAATTG+GGG 0.605460 7.4:+47577125 MS.gene022929:CDS
GTGTTCTTGATGATGGCCCA+TGG 0.605740 7.4:+47576715 MS.gene022929:CDS
CGGGTTCAGAACTTAAGAAG+AGG 0.609884 7.4:+47577552 MS.gene022929:CDS
TACCAAACAGTGATCGAGGA+TGG 0.611265 7.4:-47576544 None:intergenic
TCCAGGTGGTGCTGCTAGTG+CGG 0.614412 7.4:+47577280 MS.gene022929:CDS
CGTAATCACCAGTACTAACA+CGG 0.615539 7.4:-47576998 None:intergenic
ACTGCTTGGCCATTCAGACA+AGG 0.615646 7.4:+47577073 MS.gene022929:CDS
CACCACCTGGATGAAAGTTG+CGG 0.616021 7.4:-47577268 None:intergenic
CTCTATTGTCAAAACTGATG+GGG 0.617557 7.4:+47576650 MS.gene022929:CDS
ACAGATGTAGGGACAACCCC+AGG 0.618679 7.4:-47576777 None:intergenic
GGCCGCAACTTTCATCCAGG+TGG 0.619748 7.4:+47577266 MS.gene022929:CDS
ATGGGCCATCATCAAGAACA+CGG 0.622255 7.4:-47576713 None:intergenic
AAAGATGCACTTGACAGGTA+CGG 0.627868 7.4:-47577412 None:intergenic
CAACATGCTTCACTTTGGCG+AGG 0.630950 7.4:-47577379 None:intergenic
TCGCATATAAGTGCTGTGGA+TGG 0.638243 7.4:-47576925 None:intergenic
CTCGGCACAACAGATGGGAT+AGG 0.642910 7.4:-47577212 None:intergenic
AATCAGCCAAATGTTGGTCA+GGG 0.647271 7.4:+47576855 MS.gene022929:CDS
GTTTACAAGTGAGGAATCTG+AGG 0.651895 7.4:+47577514 MS.gene022929:CDS
TCAATCGCATATAAGTGCTG+TGG 0.657243 7.4:-47576929 None:intergenic
TGGGCCATCATCAAGAACAC+GGG 0.657924 7.4:-47576712 None:intergenic
GGTGTTAGTTTCAGACTCAG+TGG 0.662728 7.4:-47576523 None:intergenic
GTCCTACCAAACAGTGATCG+AGG 0.664033 7.4:-47576548 None:intergenic
CATGGACCGTATACAACCTG+GGG 0.669644 7.4:+47576761 MS.gene022929:CDS
TAGTTTCAGACTCAGTGGCG+AGG 0.677757 7.4:-47576518 None:intergenic
TGGGCAACCTGTGATGAGTG+TGG 0.688147 7.4:-47577465 None:intergenic
ACTCATCACAGGTTGCCCAG+TGG 0.753003 7.4:+47577469 MS.gene022929:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAAGTATGAGAAACT+TGG + chr7.4:47577029-47577048 MS.gene022929:CDS 20.0%
!!! TGATAATTTTCATATTGTCA+TGG + chr7.4:47576743-47576762 MS.gene022929:CDS 20.0%
!!! AACTTGGTATTTTTTGTTAC+AGG + chr7.4:47577045-47577064 MS.gene022929:CDS 25.0%
GAAAATTATCATACAGCCAT+GGG - chr7.4:47576734-47576753 None:intergenic 30.0%
TCTCTATTGTCAAAACTGAT+GGG + chr7.4:47576649-47576668 MS.gene022929:CDS 30.0%
TGAAAATTATCATACAGCCA+TGG - chr7.4:47576735-47576754 None:intergenic 30.0%
TTTGGCTGATTACAACAAAA+AGG - chr7.4:47576846-47576865 None:intergenic 30.0%
! TACGGTCATCATAGATTTTA+AGG - chr7.4:47576902-47576921 None:intergenic 30.0%
! TTTTCAGTTCCACCATAAAA+TGG + chr7.4:47576683-47576702 MS.gene022929:CDS 30.0%
!! ATCCTTAAGCCATTTGTTAT+TGG - chr7.4:47577192-47577211 None:intergenic 30.0%
!! TTTTATGGTGGAACTGAAAA+AGG - chr7.4:47576683-47576702 None:intergenic 30.0%
CTCTATTGTCAAAACTGATG+GGG + chr7.4:47576650-47576669 MS.gene022929:CDS 35.0%
GTCTCTATTGTCAAAACTGA+TGG + chr7.4:47576648-47576667 MS.gene022929:CDS 35.0%
TCAGATTCCTCACTTGTAAA+CGG - chr7.4:47577515-47577534 None:intergenic 35.0%
TGCCAATAACAAATGGCTTA+AGG + chr7.4:47577187-47577206 MS.gene022929:CDS 35.0%
TGTTGTAATCAGCCAAATGT+TGG + chr7.4:47576849-47576868 MS.gene022929:CDS 35.0%
!!! ACTTTCCACTCTTTTTTCAG+TGG - chr7.4:47576978-47576997 None:intergenic 35.0%
!!! CTTTCCACTCTTTTTTCAGT+GGG - chr7.4:47576977-47576996 None:intergenic 35.0%
!!! GGTATTTTTTGTTACAGGTG+CGG + chr7.4:47577050-47577069 MS.gene022929:CDS 35.0%
AAAGATGCACTTGACAGGTA+CGG - chr7.4:47577415-47577434 None:intergenic 40.0%
AATCAGCCAAATGTTGGTCA+GGG + chr7.4:47576855-47576874 MS.gene022929:CDS 40.0%
ACCAGCAATATTGAGACTTG+AGG - chr7.4:47576466-47576485 None:intergenic 40.0%
ACTAGCAACATGCTTCACTT+TGG - chr7.4:47577387-47577406 None:intergenic 40.0%
AGGTAAAAGATGCACTTGAC+AGG - chr7.4:47577420-47577439 None:intergenic 40.0%
CCAGCAATATTGAGACTTGA+GGG - chr7.4:47576465-47576484 None:intergenic 40.0%
CGTAATCACCAGTACTAACA+CGG - chr7.4:47577001-47577020 None:intergenic 40.0%
GGTGGAACTGAAAAAGGAAA+CGG - chr7.4:47576677-47576696 None:intergenic 40.0%
GGTTTAACCATTGCTGAAGA+GGG + chr7.4:47576483-47576502 MS.gene022929:CDS 40.0%
GTTCAGCTGCCAATAACAAA+TGG + chr7.4:47577180-47577199 MS.gene022929:CDS 40.0%
GTTTACAAGTGAGGAATCTG+AGG + chr7.4:47577514-47577533 MS.gene022929:CDS 40.0%
TAATCAGCCAAATGTTGGTC+AGG + chr7.4:47576854-47576873 MS.gene022929:CDS 40.0%
TGGTTTAACCATTGCTGAAG+AGG + chr7.4:47576482-47576501 MS.gene022929:CDS 40.0%
TTCGAATTGGAAGCTGATGA+CGG + chr7.4:47577110-47577129 MS.gene022929:CDS 40.0%
! AAGTGCTGTGGATGGTATTA+CGG - chr7.4:47576920-47576939 None:intergenic 40.0%
! TCAATCGCATATAAGTGCTG+TGG - chr7.4:47576932-47576951 None:intergenic 40.0%
!!! CTTTTACCTTCTGTTTCTGC+AGG + chr7.4:47577431-47577450 MS.gene022929:intron 40.0%
AAACCGGTTGCTTCTCGTAT+TGG + chr7.4:47577158-47577177 MS.gene022929:CDS 45.0%
ACCTGAACCATATGGACATC+TGG + chr7.4:47576802-47576821 MS.gene022929:CDS 45.0%
ATCCTCGATCACTGTTTGGT+AGG + chr7.4:47576546-47576565 MS.gene022929:CDS 45.0%
ATCTGTCGACCTGAACCATA+TGG + chr7.4:47576794-47576813 MS.gene022929:CDS 45.0%
ATGGGCCATCATCAAGAACA+CGG - chr7.4:47576716-47576735 None:intergenic 45.0%
CAGAACTTAAGAAGAGGACG+AGG + chr7.4:47577558-47577577 MS.gene022929:CDS 45.0%
CAGGGTATAGGTAGCTATCT+AGG + chr7.4:47576873-47576892 MS.gene022929:CDS 45.0%
CCAAATGTTGGTCAGGGTAT+AGG + chr7.4:47576861-47576880 MS.gene022929:CDS 45.0%
CCCTCAAGTCTCAATATTGC+TGG + chr7.4:47576462-47576481 MS.gene022929:CDS 45.0%
CCTATACCCTGACCAACATT+TGG - chr7.4:47576864-47576883 None:intergenic 45.0%
CCTGAACCATATGGACATCT+GGG + chr7.4:47576803-47576822 MS.gene022929:CDS 45.0%
CGGGTTCAGAACTTAAGAAG+AGG + chr7.4:47577552-47577571 MS.gene022929:CDS 45.0%
CTGTCCCACTGAAAAAAGAG+TGG + chr7.4:47576970-47576989 MS.gene022929:CDS 45.0%
CTTCCAATTCGAACAAGTCC+GGG - chr7.4:47577103-47577122 None:intergenic 45.0%
GAAAGTCCTGCAGAAACAGA+AGG - chr7.4:47577440-47577459 None:intergenic 45.0%
GAACCAATACGAGAAGCAAC+CGG - chr7.4:47577164-47577183 None:intergenic 45.0%
GCTTCCAATTCGAACAAGTC+CGG - chr7.4:47577104-47577123 None:intergenic 45.0%
GGTTAAACCCTCTTCAGCAA+TGG - chr7.4:47576493-47576512 None:intergenic 45.0%
TACCAAACAGTGATCGAGGA+TGG - chr7.4:47576547-47576566 None:intergenic 45.0%
TCATGGACCGTATACAACCT+GGG + chr7.4:47576760-47576779 MS.gene022929:CDS 45.0%
TGAGGATGACCAGGATGTTA+CGG + chr7.4:47577532-47577551 MS.gene022929:CDS 45.0%
TGGAAAGTCCGTGTTAGTAC+TGG + chr7.4:47576990-47577009 MS.gene022929:CDS 45.0%
TTTGGCTGATCGTGAGATTC+AGG + chr7.4:47576575-47576594 MS.gene022929:CDS 45.0%
TTTGTCTCGGCACAACAGAT+GGG - chr7.4:47577220-47577239 None:intergenic 45.0%
! CTGTTTGGTAGGACGTGTTT+TGG + chr7.4:47576557-47576576 MS.gene022929:CDS 45.0%
! GGTGTTAGTTTCAGACTCAG+TGG - chr7.4:47576526-47576545 None:intergenic 45.0%
! TCGCATATAAGTGCTGTGGA+TGG - chr7.4:47576928-47576947 None:intergenic 45.0%
!! TGATGACGGCGTTCGTAATT+GGG + chr7.4:47577124-47577143 MS.gene022929:CDS 45.0%
ACAATAGAGACTCGCTTGCC+TGG - chr7.4:47576639-47576658 None:intergenic 50.0%
ACTGCTTGGCCATTCAGACA+AGG + chr7.4:47577073-47577092 MS.gene022929:CDS 50.0%
AGACTCAGTGGCGAGGTTTA+GGG - chr7.4:47576514-47576533 None:intergenic 50.0%
AGCCATACGCTCGCTGAAAT+AGG - chr7.4:47576604-47576623 None:intergenic 50.0%
CAACATGCTTCACTTTGGCG+AGG - chr7.4:47577382-47577401 None:intergenic 50.0%
CACCACCTGGATGAAAGTTG+CGG - chr7.4:47577271-47577290 None:intergenic 50.0%
CACCATCCTCGATCACTGTT+TGG + chr7.4:47576542-47576561 MS.gene022929:CDS 50.0%
CATGGACCGTATACAACCTG+GGG + chr7.4:47576761-47576780 MS.gene022929:CDS 50.0%
CCATATGGACATCTGGGTTC+AGG + chr7.4:47576809-47576828 MS.gene022929:CDS 50.0%
CCATTCAGACAAGGTTTGCC+CGG + chr7.4:47577082-47577101 MS.gene022929:CDS 50.0%
CCCAGATGTCCATATGGTTC+AGG - chr7.4:47576806-47576825 None:intergenic 50.0%
CCTGAACCCAGATGTCCATA+TGG - chr7.4:47576812-47576831 None:intergenic 50.0%
GAGGATGACCAGGATGTTAC+GGG + chr7.4:47577533-47577552 MS.gene022929:CDS 50.0%
GGACAACCCCAGGTTGTATA+CGG - chr7.4:47576770-47576789 None:intergenic 50.0%
GGTTCAGGTCGACAGATGTA+GGG - chr7.4:47576791-47576810 None:intergenic 50.0%
GTCATGGACCGTATACAACC+TGG + chr7.4:47576759-47576778 MS.gene022929:CDS 50.0%
GTCCTACCAAACAGTGATCG+AGG - chr7.4:47576551-47576570 None:intergenic 50.0%
GTTTGTCTCGGCACAACAGA+TGG - chr7.4:47577221-47577240 None:intergenic 50.0%
TAGTTTCAGACTCAGTGGCG+AGG - chr7.4:47576521-47576540 None:intergenic 50.0%
TCACTTGTAAACGGAGCAGC+AGG - chr7.4:47577506-47577525 None:intergenic 50.0%
TCAGCTTCCACACTCATCAC+AGG + chr7.4:47577458-47577477 MS.gene022929:CDS 50.0%
TGAGGAATCTGAGGATGACC+AGG + chr7.4:47577523-47577542 MS.gene022929:CDS 50.0%
TGCCTATTTCAGCGAGCGTA+TGG + chr7.4:47576599-47576618 MS.gene022929:CDS 50.0%
TGCTGCTCCGTTTACAAGTG+AGG + chr7.4:47577505-47577524 MS.gene022929:CDS 50.0%
TGGGCCATCATCAAGAACAC+GGG - chr7.4:47576715-47576734 None:intergenic 50.0%
TGGTTCAGGTCGACAGATGT+AGG - chr7.4:47576792-47576811 None:intergenic 50.0%
! CACGGGCAGCATCCATTTTA+TGG - chr7.4:47576698-47576717 None:intergenic 50.0%
! GAAGCAACCGGTTTCAGATC+AGG - chr7.4:47577152-47577171 None:intergenic 50.0%
! GACATCTGGGTTCAGGTTCA+TGG + chr7.4:47576816-47576835 MS.gene022929:CDS 50.0%
! GATGACGGCGTTCGTAATTG+GGG + chr7.4:47577125-47577144 MS.gene022929:CDS 50.0%
! GGGCAGCATCCATTTTATGG+TGG - chr7.4:47576695-47576714 None:intergenic 50.0%
! GTTCTGAACCCGTAACATCC+TGG - chr7.4:47577544-47577563 None:intergenic 50.0%
! TTGCCCGGACTTGTTCGAAT+TGG + chr7.4:47577097-47577116 MS.gene022929:CDS 50.0%
! TTGGGGACCTGATCTGAAAC+CGG + chr7.4:47577142-47577161 MS.gene022929:CDS 50.0%
!! CTGATGACGGCGTTCGTAAT+TGG + chr7.4:47577123-47577142 MS.gene022929:CDS 50.0%
!! GTGTTCTTGATGATGGCCCA+TGG + chr7.4:47576715-47576734 MS.gene022929:CDS 50.0%
ACAGATGTAGGGACAACCCC+AGG - chr7.4:47576780-47576799 None:intergenic 55.0%
ACTCATCACAGGTTGCCCAG+TGG + chr7.4:47577469-47577488 MS.gene022929:CDS 55.0%
CAGACTCAGTGGCGAGGTTT+AGG - chr7.4:47576515-47576534 None:intergenic 55.0%
CAGGTAAACCGAGCACCACT+GGG - chr7.4:47577487-47577506 None:intergenic 55.0%
CCGGGCAAACCTTGTCTGAA+TGG - chr7.4:47577085-47577104 None:intergenic 55.0%
CTCGGCACAACAGATGGGAT+AGG - chr7.4:47577215-47577234 None:intergenic 55.0%
GCTGCCCGTGTTCTTGATGA+TGG + chr7.4:47576708-47576727 MS.gene022929:CDS 55.0%
GGAGCTTGGGGAGTTTGTCT+CGG - chr7.4:47577233-47577252 None:intergenic 55.0%
TGGGCAACCTGTGATGAGTG+TGG - chr7.4:47577468-47577487 None:intergenic 55.0%
! TGTTACAGGTGCGGACTGCT+TGG + chr7.4:47577059-47577078 MS.gene022929:CDS 55.0%
ACAGGTTGCCCAGTGGTGCT+CGG + chr7.4:47577476-47577495 MS.gene022929:CDS 60.0%
AGCAGCAGGCATGGGAGCTT+GGG - chr7.4:47577246-47577265 None:intergenic 60.0%
ATGGCTCGTGCTTGGAAGCC+AGG + chr7.4:47576618-47576637 MS.gene022929:CDS 60.0%
GCAGGTAAACCGAGCACCAC+TGG - chr7.4:47577488-47577507 None:intergenic 60.0%
GCTGGCCGCAACTTTCATCC+AGG + chr7.4:47577263-47577282 MS.gene022929:CDS 60.0%
GGCCGCAACTTTCATCCAGG+TGG + chr7.4:47577266-47577285 MS.gene022929:CDS 60.0%
TGAAAGTTGCGGCCAGCAGC+AGG - chr7.4:47577260-47577279 None:intergenic 60.0%
!! TCCAGGTGGTGCTGCTAGTG+CGG + chr7.4:47577280-47577299 MS.gene022929:CDS 60.0%
ACCGCACTAGCAGCACCACC+TGG - chr7.4:47577284-47577303 None:intergenic 65.0%
CAAGCTCCCATGCCTGCTGC+TGG + chr7.4:47577245-47577264 MS.gene022929:CDS 65.0%
CAGCAGCAGGCATGGGAGCT+TGG - chr7.4:47577247-47577266 None:intergenic 65.0%
GCAGCAGGCATGGGAGCTTG+GGG - chr7.4:47577245-47577264 None:intergenic 65.0%
GCGAGCGTATGGCTCGTGCT+TGG + chr7.4:47576610-47576629 MS.gene022929:CDS 65.0%
TTGCGGCCAGCAGCAGGCAT+GGG - chr7.4:47577254-47577273 None:intergenic 65.0%
GTTGCGGCCAGCAGCAGGCA+TGG - chr7.4:47577255-47577274 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 47576456 47577584 47576456 ID=MS.gene022929
chr7.4 mRNA 47576456 47577584 47576456 ID=MS.gene022929.t1;Parent=MS.gene022929
chr7.4 exon 47576456 47577424 47576456 ID=MS.gene022929.t1.exon1;Parent=MS.gene022929.t1
chr7.4 CDS 47576456 47577424 47576456 ID=cds.MS.gene022929.t1;Parent=MS.gene022929.t1
chr7.4 exon 47577453 47577584 47577453 ID=MS.gene022929.t1.exon2;Parent=MS.gene022929.t1
chr7.4 CDS 47577453 47577584 47577453 ID=cds.MS.gene022929.t1;Parent=MS.gene022929.t1
Gene Sequence

>MS.gene022929

ATGGATCCCTCAAGTCTCAATATTGCTGGTTTAACCATTGCTGAAGAGGGTTTAACCCTAAACCTCGCCACTGAGTCTGAAACTAACACCATCCTCGATCACTGTTTGGTAGGACGTGTTTTGGCTGATCGTGAGATTCAGGCTGCCTATTTCAGCGAGCGTATGGCTCGTGCTTGGAAGCCAGGCAAGCGAGTCTCTATTGTCAAAACTGATGGGGACCGTTTCCTTTTTCAGTTCCACCATAAAATGGATGCTGCCCGTGTTCTTGATGATGGCCCATGGCTGTATGATAATTTTCATATTGTCATGGACCGTATACAACCTGGGGTTGTCCCTACATCTGTCGACCTGAACCATATGGACATCTGGGTTCAGGTTCATGGTCTTCCTTTTTGTTGTAATCAGCCAAATGTTGGTCAGGGTATAGGTAGCTATCTAGGTGTCCTTAAAATCTATGATGACCGTAATACCATCCACAGCACTTATATGCGATTGAAAGTTCGCATTGATGTTACTGTCCCACTGAAAAAAGAGTGGAAAGTCCGTGTTAGTACTGGTGATTACGTTACTGTCAAATTTAAGTATGAGAAACTTGGTATTTTTTGTTACAGGTGCGGACTGCTTGGCCATTCAGACAAGGTTTGCCCGGACTTGTTCGAATTGGAAGCTGATGACGGCGTTCGTAATTGGGGACCTGATCTGAAACCGGTTGCTTCTCGTATTGGTTCAGCTGCCAATAACAAATGGCTTAAGGATCCTATCCCATCTGTTGTGCCGAGACAAACTCCCCAAGCTCCCATGCCTGCTGCTGGCCGCAACTTTCATCCAGGTGGTGCTGCTAGTGCGGTGACTTTCAATGATCGTATGCTAGCTGTTGATTCTCAGATTGCTGCTCTTAAAAATGATCTTCTTGCTGCTCAAAACCTCGCCAAAGTGAAGCATGTTGCTAGTGACAACCGTACCTGTCAAGTGCATCTTTTACCTTCTGTTTCTGCAGGACTTTCAGCTTCCACACTCATCACAGGTTGCCCAGTGGTGCTCGGTTTACCTGCTGCTCCGTTTACAAGTGAGGAATCTGAGGATGACCAGGATGTTACGGGTTCAGAACTTAAGAAGAGGACGAGGATGA

Protein sequence

>MS.gene022929.t1

MDPSSLNIAGLTIAEEGLTLNLATESETNTILDHCLVGRVLADREIQAAYFSERMARAWKPGKRVSIVKTDGDRFLFQFHHKMDAARVLDDGPWLYDNFHIVMDRIQPGVVPTSVDLNHMDIWVQVHGLPFCCNQPNVGQGIGSYLGVLKIYDDRNTIHSTYMRLKVRIDVTVPLKKEWKVRVSTGDYVTVKFKYEKLGIFCYRCGLLGHSDKVCPDLFELEADDGVRNWGPDLKPVASRIGSAANNKWLKDPIPSVVPRQTPQAPMPAAGRNFHPGGAASAVTFNDRMLAVDSQIAALKNDLLAAQNLAKVKHVASDNRTCQDFQLPHSSQVAQWCSVYLLLRLQVRNLRMTRMLRVQNLRRGRG